Query 006588
Match_columns 639
No_of_seqs 260 out of 3997
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.2E-41 1.8E-45 365.6 22.4 316 30-371 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.7E-33 5.8E-38 338.6 30.2 317 21-369 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 7.3E-34 2.5E-38 312.7 20.5 284 29-362 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.4E-32 1.2E-36 300.7 27.3 309 22-366 119-449 (591)
5 4fcg_A Uncharacterized protein 99.8 3.9E-21 1.3E-25 195.4 14.0 217 373-608 88-313 (328)
6 4fcg_A Uncharacterized protein 99.8 1.2E-21 4E-26 199.3 9.2 219 388-639 80-308 (328)
7 1ogq_A PGIP-2, polygalacturona 99.8 9.8E-22 3.4E-26 198.6 8.5 202 388-608 75-280 (313)
8 1ogq_A PGIP-2, polygalacturona 99.8 8.2E-21 2.8E-25 191.8 9.9 220 389-639 50-275 (313)
9 3rgz_A Protein brassinosteroid 99.8 1.5E-20 5.3E-25 213.5 12.5 222 389-639 418-711 (768)
10 3rgz_A Protein brassinosteroid 99.8 4E-20 1.4E-24 210.0 10.1 223 388-639 393-687 (768)
11 2z66_A Variable lymphocyte rec 99.8 2.2E-19 7.4E-24 181.0 12.0 227 385-639 24-255 (306)
12 3zyj_A Leucine-rich repeat-con 99.8 8.5E-19 2.9E-23 186.1 12.3 224 385-639 60-286 (440)
13 3zyi_A Leucine-rich repeat-con 99.8 6.8E-19 2.3E-23 187.5 11.5 224 385-639 71-297 (452)
14 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.3E-23 173.5 11.9 208 385-609 28-238 (285)
15 3v47_A TOLL-like receptor 5B a 99.8 8.4E-19 2.9E-23 187.2 10.9 142 387-533 28-174 (455)
16 1ozn_A Reticulon 4 receptor; N 99.8 8.8E-19 3E-23 174.6 10.1 217 392-639 14-232 (285)
17 2qen_A Walker-type ATPase; unk 99.8 2.3E-17 8E-22 169.4 20.4 297 22-363 7-349 (350)
18 4eco_A Uncharacterized protein 99.8 9.6E-19 3.3E-23 194.1 10.3 203 387-609 247-470 (636)
19 4eco_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 198.1 6.1 205 389-609 81-390 (636)
20 2z80_A TOLL-like receptor 2, v 99.7 4.8E-19 1.6E-23 182.3 4.6 231 385-639 48-308 (353)
21 2z62_A TOLL-like receptor 4, v 99.7 6.5E-18 2.2E-22 167.5 11.6 213 383-609 22-237 (276)
22 4ecn_A Leucine-rich repeat pro 99.7 3.1E-18 1.1E-22 193.6 10.3 181 388-582 447-661 (876)
23 2fna_A Conserved hypothetical 99.7 1.3E-16 4.4E-21 164.3 21.5 295 22-362 8-356 (357)
24 1xku_A Decorin; proteoglycan, 99.7 1.8E-17 6.1E-22 168.8 14.6 203 386-609 49-276 (330)
25 2ft3_A Biglycan; proteoglycan, 99.7 2.4E-17 8.1E-22 168.1 15.2 175 385-576 50-228 (332)
26 2z66_A Variable lymphocyte rec 99.7 2.2E-18 7.5E-23 173.7 6.6 216 393-639 11-230 (306)
27 2o6q_A Variable lymphocyte rec 99.7 1.9E-17 6.4E-22 163.5 12.9 197 392-607 19-216 (270)
28 2id5_A Lingo-1, leucine rich r 99.7 5.8E-18 2E-22 181.8 10.0 233 385-639 28-279 (477)
29 3t6q_A CD180 antigen; protein- 99.7 1.1E-17 3.8E-22 185.3 12.5 207 388-608 277-488 (606)
30 3v47_A TOLL-like receptor 5B a 99.7 7.8E-18 2.7E-22 179.7 10.6 88 388-480 78-168 (455)
31 4ecn_A Leucine-rich repeat pro 99.7 5.4E-17 1.8E-21 183.6 17.4 147 387-543 489-650 (876)
32 1w5s_A Origin recognition comp 99.7 1.5E-16 5.1E-21 167.4 19.7 305 25-343 20-373 (412)
33 3o6n_A APL1; leucine-rich repe 99.7 4.8E-18 1.6E-22 177.4 8.1 130 389-524 45-176 (390)
34 2z7x_B TOLL-like receptor 1, v 99.7 3.2E-17 1.1E-21 178.1 13.1 137 385-533 17-160 (520)
35 1p9a_G Platelet glycoprotein I 99.7 4.6E-17 1.6E-21 162.1 12.9 198 389-608 10-207 (290)
36 3oja_B Anopheles plasmodium-re 99.7 2.9E-17 1E-21 181.1 12.1 200 387-609 97-337 (597)
37 2id5_A Lingo-1, leucine rich r 99.7 9E-18 3.1E-22 180.3 7.4 226 389-639 56-303 (477)
38 3t6q_A CD180 antigen; protein- 99.7 3E-17 1E-21 181.8 11.7 219 375-609 287-513 (606)
39 3vq2_A TLR4, TOLL-like recepto 99.7 3.6E-17 1.2E-21 181.1 12.3 181 385-576 28-215 (606)
40 3j0a_A TOLL-like receptor 5; m 99.7 6.1E-17 2.1E-21 185.8 14.6 182 387-577 22-216 (844)
41 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.6E-22 172.2 7.4 197 394-610 36-236 (353)
42 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-17 1.1E-21 181.7 11.5 206 389-609 307-534 (606)
43 3o6n_A APL1; leucine-rich repe 99.7 4.7E-17 1.6E-21 169.8 12.1 236 366-639 69-346 (390)
44 3oja_B Anopheles plasmodium-re 99.7 1.6E-17 5.3E-22 183.3 8.9 131 389-525 51-183 (597)
45 3zyj_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 174.0 10.8 203 387-608 86-291 (440)
46 1xku_A Decorin; proteoglycan, 99.7 3E-16 1E-20 159.7 17.5 225 389-639 100-326 (330)
47 3zyi_A Leucine-rich repeat-con 99.7 3.3E-17 1.1E-21 174.4 10.7 203 387-608 97-302 (452)
48 1p9a_G Platelet glycoprotein I 99.7 5.5E-17 1.9E-21 161.6 10.6 180 408-609 6-185 (290)
49 2ft3_A Biglycan; proteoglycan, 99.7 6.4E-17 2.2E-21 164.9 10.9 194 390-608 34-229 (332)
50 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.5E-21 157.5 12.2 195 388-609 40-235 (272)
51 2o6q_A Variable lymphocyte rec 99.7 2.7E-16 9.1E-21 155.2 14.3 185 385-580 33-220 (270)
52 3rfs_A Internalin B, repeat mo 99.7 2.8E-16 9.6E-21 155.1 13.5 179 387-583 61-240 (272)
53 2z62_A TOLL-like receptor 4, v 99.7 4.8E-17 1.6E-21 161.2 7.7 208 400-639 18-231 (276)
54 1wwl_A Monocyte differentiatio 99.7 1.6E-16 5.6E-21 160.2 11.5 199 388-609 94-309 (312)
55 1wwl_A Monocyte differentiatio 99.7 6.5E-18 2.2E-22 170.5 1.1 215 391-639 65-303 (312)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.9E-16 6.5E-21 173.5 12.3 129 385-525 48-181 (562)
57 1ziw_A TOLL-like receptor 3; i 99.7 1.2E-16 4.1E-21 179.5 10.9 169 385-563 21-193 (680)
58 2z63_A TOLL-like receptor 4, v 99.7 1.3E-16 4.4E-21 175.4 10.9 149 385-539 24-175 (570)
59 1h6u_A Internalin H; cell adhe 99.7 4.6E-16 1.6E-20 156.5 14.0 190 389-609 41-230 (308)
60 4fmz_A Internalin; leucine ric 99.7 7.3E-16 2.5E-20 158.1 15.1 210 386-639 63-272 (347)
61 2z81_A CD282 antigen, TOLL-lik 99.7 5.5E-17 1.9E-21 177.4 6.9 183 386-579 23-210 (549)
62 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.8E-21 153.1 11.1 179 390-580 15-194 (251)
63 4glp_A Monocyte differentiatio 99.7 6.5E-16 2.2E-20 155.7 13.9 202 389-609 91-307 (310)
64 3oja_A Leucine-rich immune mol 99.7 7.8E-17 2.7E-21 172.6 7.4 139 390-543 35-175 (487)
65 2z63_A TOLL-like receptor 4, v 99.7 1.9E-16 6.5E-21 174.0 10.6 185 409-609 344-531 (570)
66 4fmz_A Internalin; leucine ric 99.6 1.4E-15 4.7E-20 156.0 15.7 226 369-639 69-294 (347)
67 2xwt_C Thyrotropin receptor; s 99.6 1.8E-16 6.1E-21 153.4 8.1 197 387-606 29-236 (239)
68 1h6u_A Internalin H; cell adhe 99.6 5.9E-16 2E-20 155.7 11.2 188 408-639 37-224 (308)
69 1ziw_A TOLL-like receptor 3; i 99.6 5.6E-16 1.9E-20 174.0 11.5 115 491-609 224-342 (680)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.9E-16 1.3E-20 171.1 9.9 141 391-544 33-176 (562)
71 3j0a_A TOLL-like receptor 5; m 99.6 4.7E-16 1.6E-20 178.5 10.8 143 387-535 46-196 (844)
72 2z81_A CD282 antigen, TOLL-lik 99.6 1.5E-16 5.1E-21 174.0 6.2 195 397-610 13-210 (549)
73 3bz5_A Internalin-J, INLJ; leu 99.6 2.4E-15 8.2E-20 159.6 14.6 185 387-609 62-246 (457)
74 3m19_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 147.7 11.4 178 412-609 14-192 (251)
75 3o53_A Protein LRIM1, AGAP0063 99.6 2.2E-16 7.4E-21 159.7 4.9 191 388-608 57-249 (317)
76 1o6v_A Internalin A; bacterial 99.6 5.3E-15 1.8E-19 158.0 15.7 189 389-608 177-365 (466)
77 2v1u_A Cell division control p 99.6 4.5E-14 1.6E-18 147.0 22.0 301 24-343 16-353 (387)
78 2ast_B S-phase kinase-associat 99.6 3.2E-16 1.1E-20 159.9 5.5 179 388-575 92-282 (336)
79 3oja_A Leucine-rich immune mol 99.6 2.5E-16 8.4E-21 168.8 4.6 185 397-609 15-204 (487)
80 2xwt_C Thyrotropin receptor; s 99.6 7.9E-16 2.7E-20 148.9 7.6 192 396-609 18-218 (239)
81 2z7x_B TOLL-like receptor 1, v 99.6 5E-15 1.7E-19 160.7 14.5 157 439-609 321-481 (520)
82 1fnn_A CDC6P, cell division co 99.6 6.9E-14 2.4E-18 145.7 22.6 300 25-343 15-353 (389)
83 1o6v_A Internalin A; bacterial 99.6 1.3E-14 4.4E-19 155.0 17.0 172 408-609 173-344 (466)
84 2ca6_A RAN GTPase-activating p 99.6 2.8E-16 9.7E-21 163.6 3.5 211 389-608 32-286 (386)
85 2qby_B CDC6 homolog 3, cell di 99.6 7E-14 2.4E-18 145.4 21.6 297 25-343 18-341 (384)
86 3bz5_A Internalin-J, INLJ; leu 99.6 7.9E-15 2.7E-19 155.6 13.7 197 389-609 127-331 (457)
87 2o6s_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 138.6 9.9 171 394-583 12-183 (208)
88 4glp_A Monocyte differentiatio 99.6 1.8E-15 6.1E-20 152.5 5.5 216 390-639 65-301 (310)
89 1h6t_A Internalin B; cell adhe 99.6 1.2E-14 4.3E-19 144.6 11.5 168 389-578 46-213 (291)
90 4b8c_D Glucose-repressible alc 99.5 2.2E-15 7.6E-20 168.8 5.5 184 390-582 174-358 (727)
91 3o53_A Protein LRIM1, AGAP0063 99.5 2.8E-15 9.7E-20 151.5 5.4 209 389-639 34-244 (317)
92 4ezg_A Putative uncharacterize 99.5 1.1E-14 3.9E-19 136.0 9.1 151 409-607 41-192 (197)
93 1m9s_A Internalin B; cell inva 99.5 4.7E-15 1.6E-19 162.1 7.1 170 388-579 42-211 (605)
94 2ast_B S-phase kinase-associat 99.5 2.5E-16 8.4E-21 160.8 -3.7 203 389-606 70-282 (336)
95 2o6s_A Variable lymphocyte rec 99.5 2.6E-14 8.8E-19 134.9 10.4 165 385-566 24-190 (208)
96 2qby_A CDC6 homolog 1, cell di 99.5 2.6E-13 8.8E-18 141.1 19.0 298 23-342 16-349 (386)
97 2ca6_A RAN GTPase-activating p 99.5 1.4E-15 4.9E-20 158.3 1.5 222 398-639 18-281 (386)
98 3goz_A Leucine-rich repeat-con 99.5 2.7E-15 9.1E-20 154.7 3.0 234 389-639 22-291 (362)
99 4g8a_A TOLL-like receptor 4; l 99.5 2.4E-14 8.1E-19 159.3 10.8 186 383-575 46-234 (635)
100 1h6t_A Internalin B; cell adhe 99.5 8.3E-14 2.8E-18 138.6 12.6 141 388-544 67-207 (291)
101 3g06_A SSPH2 (leucine-rich rep 99.5 1.1E-13 3.9E-18 151.3 14.4 79 388-483 80-158 (622)
102 4ezg_A Putative uncharacterize 99.5 9.2E-14 3.2E-18 129.8 11.1 144 388-543 43-187 (197)
103 2v9t_B SLIT homolog 2 protein 99.5 4.3E-14 1.5E-18 134.5 8.8 142 394-543 16-158 (220)
104 3cvr_A Invasion plasmid antige 99.5 9E-14 3.1E-18 150.2 12.1 127 390-543 60-186 (571)
105 2v9t_B SLIT homolog 2 protein 99.5 1.7E-13 5.8E-18 130.3 12.1 132 442-578 32-165 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 8.4E-14 2.9E-18 132.5 9.9 144 393-543 15-159 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.4E-18 131.2 11.1 153 415-580 14-168 (220)
108 1njg_A DNA polymerase III subu 99.5 8.9E-13 3E-17 127.6 16.8 202 23-240 19-231 (250)
109 3goz_A Leucine-rich repeat-con 99.5 2.8E-14 9.6E-19 147.0 6.1 228 395-639 4-260 (362)
110 1jl5_A Outer protein YOPM; leu 99.5 3.6E-14 1.2E-18 150.4 7.0 165 389-578 11-208 (454)
111 1m9s_A Internalin B; cell inva 99.5 8E-14 2.7E-18 152.3 9.8 143 386-544 62-204 (605)
112 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.8E-18 130.8 11.2 141 394-543 24-165 (229)
113 4g8a_A TOLL-like receptor 4; l 99.5 1.2E-13 4E-18 153.7 10.9 161 400-572 42-204 (635)
114 1z7x_W Ribonuclease inhibitor; 99.5 1.4E-14 4.9E-19 154.5 3.2 179 389-576 28-238 (461)
115 3e6j_A Variable lymphocyte rec 99.4 3E-13 1E-17 129.6 11.5 139 385-529 36-175 (229)
116 1dce_A Protein (RAB geranylger 99.4 1E-14 3.5E-19 158.5 1.3 178 409-609 346-546 (567)
117 4ay9_X Follicle-stimulating ho 99.4 1E-13 3.6E-18 142.0 8.8 194 374-578 17-215 (350)
118 3g06_A SSPH2 (leucine-rich rep 99.4 3.6E-13 1.2E-17 147.4 13.3 138 370-531 44-198 (622)
119 4b8c_D Glucose-repressible alc 99.4 2E-14 6.9E-19 161.1 2.9 192 396-609 208-404 (727)
120 2chg_A Replication factor C sm 99.4 2.5E-12 8.7E-17 122.5 16.8 190 22-237 12-204 (226)
121 1z7x_W Ribonuclease inhibitor; 99.4 1.8E-14 6E-19 153.9 0.6 190 411-609 198-411 (461)
122 2xot_A Amphoterin-induced prot 99.4 8.8E-14 3E-18 143.2 5.8 85 440-524 62-147 (361)
123 1jl5_A Outer protein YOPM; leu 99.4 2.2E-12 7.5E-17 136.7 16.4 159 389-577 111-269 (454)
124 1xeu_A Internalin C; cellular 99.4 7E-13 2.4E-17 129.8 10.2 140 389-545 41-180 (263)
125 2ell_A Acidic leucine-rich nuc 99.4 6.8E-13 2.3E-17 120.5 9.3 132 440-577 22-159 (168)
126 2je0_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 119.8 6.9 127 441-572 16-147 (149)
127 1xeu_A Internalin C; cellular 99.4 1.7E-12 5.7E-17 127.1 12.2 161 396-579 26-186 (263)
128 2ell_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 121.2 7.6 133 389-531 24-164 (168)
129 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4.2E-17 121.5 10.0 101 443-543 30-132 (192)
130 2xot_A Amphoterin-induced prot 99.4 5.2E-13 1.8E-17 137.4 7.6 174 415-608 21-201 (361)
131 4ay9_X Follicle-stimulating ho 99.3 1E-12 3.5E-17 134.6 8.1 201 393-612 13-218 (350)
132 3cvr_A Invasion plasmid antige 99.3 9.5E-13 3.3E-17 142.2 7.9 163 387-582 78-247 (571)
133 1dce_A Protein (RAB geranylger 99.3 1E-13 3.6E-18 150.5 -0.1 202 388-603 348-567 (567)
134 1w8a_A SLIT protein; signaling 99.3 1.4E-12 4.8E-17 121.1 7.4 131 392-530 11-143 (192)
135 2wfh_A SLIT homolog 2 protein 99.3 6.8E-12 2.3E-16 116.5 10.8 101 442-543 31-132 (193)
136 2je0_A Acidic leucine-rich nuc 99.3 1.5E-12 5.1E-17 115.6 5.9 125 412-543 17-146 (149)
137 1sxj_B Activator 1 37 kDa subu 99.3 2.1E-11 7.1E-16 123.4 13.5 191 22-238 16-211 (323)
138 3ogk_B Coronatine-insensitive 99.2 3.9E-12 1.3E-16 140.2 5.8 155 438-604 188-350 (592)
139 2o6r_A Variable lymphocyte rec 99.2 1.5E-11 5.1E-16 112.6 8.4 129 392-529 10-140 (177)
140 2wfh_A SLIT homolog 2 protein 99.2 2.4E-11 8.2E-16 112.8 9.6 125 392-526 13-139 (193)
141 1a9n_A U2A', U2A'; complex (nu 99.2 1.6E-11 5.6E-16 112.2 8.2 127 440-576 17-151 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 112.5 6.3 127 408-545 15-148 (176)
143 1ds9_A Outer arm dynein; leuci 99.2 8E-14 2.7E-18 130.4 -9.3 134 461-602 43-180 (198)
144 3ogk_B Coronatine-insensitive 99.2 2.5E-12 8.5E-17 141.8 0.6 153 388-544 163-325 (592)
145 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 106.8 10.6 84 442-525 28-112 (177)
146 3te6_A Regulatory protein SIR3 99.2 5.2E-10 1.8E-14 110.6 15.9 175 26-204 19-212 (318)
147 2p1m_B Transport inhibitor res 99.2 1.2E-11 4.1E-16 136.4 4.5 132 388-523 104-245 (594)
148 1ds9_A Outer arm dynein; leuci 99.1 2.6E-13 9E-18 126.9 -8.2 125 438-571 44-180 (198)
149 1iqp_A RFCS; clamp loader, ext 99.1 2.3E-10 7.8E-15 115.9 12.9 191 21-238 19-213 (327)
150 1jr3_A DNA polymerase III subu 99.1 7.4E-10 2.5E-14 114.4 15.7 197 25-237 14-221 (373)
151 1hqc_A RUVB; extended AAA-ATPa 99.1 4.7E-10 1.6E-14 113.4 11.8 185 24-240 9-214 (324)
152 2chq_A Replication factor C sm 99.0 1E-09 3.5E-14 110.6 12.7 185 23-236 13-203 (319)
153 1jbk_A CLPB protein; beta barr 99.0 3.7E-09 1.3E-13 97.8 12.6 156 23-199 18-194 (195)
154 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 98.7 8.9 98 443-543 10-108 (170)
155 2r9u_A Variable lymphocyte rec 98.9 7.8E-10 2.7E-14 100.6 6.6 102 415-526 15-118 (174)
156 1sxj_D Activator 1 41 kDa subu 98.9 1.1E-08 3.7E-13 104.7 15.3 198 22-235 32-233 (353)
157 2r9u_A Variable lymphocyte rec 98.9 2.1E-09 7.3E-14 97.6 8.5 96 444-543 14-111 (174)
158 3g39_A Variable lymphocyte rec 98.9 4.5E-09 1.5E-13 95.1 10.5 107 413-528 10-117 (170)
159 3bos_A Putative DNA replicatio 98.9 4.4E-09 1.5E-13 101.1 11.1 177 25-238 26-218 (242)
160 2p1m_B Transport inhibitor res 98.9 1.1E-10 3.9E-15 128.5 -0.8 209 388-606 155-407 (594)
161 3sb4_A Hypothetical leucine ri 98.8 2.3E-09 7.9E-14 108.5 5.9 216 388-638 48-327 (329)
162 3pfi_A Holliday junction ATP-d 98.8 1.3E-07 4.5E-12 95.9 18.7 186 20-238 22-228 (338)
163 3sb4_A Hypothetical leucine ri 98.8 4.5E-09 1.5E-13 106.4 7.0 171 411-602 100-327 (329)
164 1sxj_A Activator 1 95 kDa subu 98.8 1.6E-08 5.6E-13 108.5 11.5 201 22-236 34-252 (516)
165 1sxj_E Activator 1 40 kDa subu 98.8 2.1E-08 7.3E-13 102.5 11.2 198 23-237 10-237 (354)
166 2qz4_A Paraplegin; AAA+, SPG7, 98.7 2.9E-07 1E-11 89.6 17.5 192 24-238 3-223 (262)
167 3h4m_A Proteasome-activating n 98.7 1.2E-07 4.1E-12 93.7 14.3 190 23-237 13-231 (285)
168 3u61_B DNA polymerase accessor 98.7 6.3E-08 2.2E-12 97.6 12.3 183 21-233 20-212 (324)
169 3uk6_A RUVB-like 2; hexameric 98.7 2.6E-07 8.7E-12 95.0 17.1 200 26-237 43-303 (368)
170 3pvs_A Replication-associated 98.7 1.2E-07 4.1E-12 99.2 14.7 183 23-236 22-214 (447)
171 3un9_A NLR family member X1; l 98.7 6.6E-10 2.2E-14 114.1 -2.7 158 411-577 71-251 (372)
172 1a5t_A Delta prime, HOLB; zinc 98.7 2.1E-07 7.1E-12 94.0 15.1 184 32-236 7-204 (334)
173 2z4s_A Chromosomal replication 98.7 1.7E-07 5.8E-12 98.2 13.8 162 54-236 130-305 (440)
174 2p65_A Hypothetical protein PF 98.6 6.7E-08 2.3E-12 88.6 8.6 49 23-77 18-66 (187)
175 3un9_A NLR family member X1; l 98.6 2.5E-09 8.5E-14 109.8 -1.4 150 389-543 72-245 (372)
176 1sxj_C Activator 1 40 kDa subu 98.6 2.7E-07 9.4E-12 93.5 13.6 184 23-233 21-208 (340)
177 3eie_A Vacuolar protein sortin 98.6 4.3E-07 1.5E-11 91.2 14.7 196 20-240 11-231 (322)
178 2ifg_A High affinity nerve gro 98.6 5.7E-08 1.9E-12 99.0 8.1 95 445-543 11-109 (347)
179 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.9E-12 96.7 9.9 92 432-526 23-116 (347)
180 3syl_A Protein CBBX; photosynt 98.6 6.7E-07 2.3E-11 89.4 14.9 160 28-205 32-219 (309)
181 1l8q_A Chromosomal replication 98.6 7.5E-07 2.6E-11 89.7 15.3 181 25-233 9-204 (324)
182 3n70_A Transport activator; si 98.5 9.9E-08 3.4E-12 83.6 5.9 114 28-172 2-115 (145)
183 2qp9_X Vacuolar protein sortin 98.5 6.9E-07 2.3E-11 90.9 12.5 194 22-239 46-263 (355)
184 1d2n_A N-ethylmaleimide-sensit 98.5 1.5E-06 5E-11 85.1 14.4 173 26-229 32-229 (272)
185 1xwi_A SKD1 protein; VPS4B, AA 98.5 1.8E-06 6.3E-11 86.4 15.1 195 23-240 8-226 (322)
186 3b9p_A CG5977-PA, isoform A; A 98.5 2.7E-06 9.2E-11 84.4 15.6 193 22-238 16-234 (297)
187 3d8b_A Fidgetin-like protein 1 98.4 2E-06 6.8E-11 87.6 13.8 192 24-239 81-297 (357)
188 3vfd_A Spastin; ATPase, microt 98.4 2.3E-06 7.9E-11 88.4 13.8 193 22-238 110-327 (389)
189 2gno_A DNA polymerase III, gam 98.4 1.3E-06 4.6E-11 86.3 11.3 149 31-203 1-152 (305)
190 3cf0_A Transitional endoplasmi 98.4 2.2E-06 7.7E-11 85.0 12.8 185 23-232 11-223 (301)
191 4b4t_J 26S protease regulatory 98.3 8.2E-06 2.8E-10 82.6 15.5 184 22-230 143-354 (405)
192 1qvr_A CLPB protein; coiled co 98.3 2.2E-06 7.7E-11 97.7 12.7 158 23-202 166-344 (854)
193 2zan_A Vacuolar protein sortin 98.3 1E-05 3.5E-10 84.8 16.1 195 22-239 129-347 (444)
194 3ec2_A DNA replication protein 98.3 1.5E-06 5.3E-11 79.1 8.7 121 32-172 19-142 (180)
195 3co5_A Putative two-component 98.3 3.5E-07 1.2E-11 79.8 3.7 112 26-172 3-115 (143)
196 4fcw_A Chaperone protein CLPB; 98.3 2.8E-06 9.4E-11 84.9 10.8 168 27-203 17-229 (311)
197 3hu3_A Transitional endoplasmi 98.3 3E-06 1E-10 89.5 11.3 187 26-237 203-415 (489)
198 4fdw_A Leucine rich hypothetic 98.2 2.1E-06 7.3E-11 88.8 9.2 192 391-609 159-358 (401)
199 4b4t_L 26S protease subunit RP 98.2 1.5E-05 5E-10 82.2 15.2 185 21-230 175-387 (437)
200 2ra8_A Uncharacterized protein 98.2 3.2E-07 1.1E-11 93.3 2.7 163 406-576 133-318 (362)
201 3pxg_A Negative regulator of g 98.2 1.9E-06 6.4E-11 91.1 8.6 146 26-203 179-338 (468)
202 2w58_A DNAI, primosome compone 98.2 2.4E-06 8.3E-11 79.4 8.3 128 25-172 23-158 (202)
203 4fdw_A Leucine rich hypothetic 98.2 1.9E-06 6.6E-11 89.1 7.9 195 389-607 180-381 (401)
204 1lv7_A FTSH; alpha/beta domain 98.2 1E-05 3.4E-10 78.4 12.4 190 22-236 7-224 (257)
205 2ra8_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 91.7 3.2 163 438-609 135-320 (362)
206 4b4t_H 26S protease regulatory 98.2 3.9E-05 1.3E-09 78.8 16.2 184 22-230 204-415 (467)
207 2c9o_A RUVB-like 1; hexameric 98.1 2.7E-05 9.1E-10 82.1 14.8 94 135-233 297-406 (456)
208 1ofh_A ATP-dependent HSL prote 98.1 3.1E-05 1.1E-09 77.1 14.5 155 27-201 15-213 (310)
209 4b4t_I 26S protease regulatory 98.1 2.5E-05 8.7E-10 79.3 13.5 184 21-230 176-388 (437)
210 1r6b_X CLPA protein; AAA+, N-t 98.1 1.8E-05 6E-10 89.4 13.7 159 25-203 184-362 (758)
211 4b4t_K 26S protease regulatory 98.1 1.5E-05 5.2E-10 81.9 11.8 184 22-230 167-379 (428)
212 2bjv_A PSP operon transcriptio 98.1 6.3E-06 2.2E-10 80.2 8.6 132 27-172 6-150 (265)
213 1in4_A RUVB, holliday junction 98.1 0.00031 1.1E-08 70.6 21.0 180 24-236 22-222 (334)
214 1ojl_A Transcriptional regulat 98.1 4.5E-06 1.5E-10 82.8 6.6 159 27-200 2-187 (304)
215 4b4t_M 26S protease regulatory 98.0 1.3E-05 4.5E-10 82.4 10.1 184 21-230 175-387 (434)
216 3pxi_A Negative regulator of g 98.0 7.4E-06 2.5E-10 92.3 8.9 146 26-203 179-338 (758)
217 1io0_A Tropomodulin; LRR prote 98.0 5.5E-06 1.9E-10 75.7 6.3 118 406-525 30-163 (185)
218 2r62_A Cell division protease 98.0 2.4E-06 8.2E-11 83.4 4.1 184 23-231 7-219 (268)
219 3rw6_A Nuclear RNA export fact 98.0 1.3E-05 4.4E-10 77.2 8.7 80 439-519 167-257 (267)
220 2ce7_A Cell division protein F 98.0 5.8E-05 2E-09 78.9 13.9 182 24-230 13-221 (476)
221 3cf2_A TER ATPase, transitiona 98.0 4.7E-05 1.6E-09 84.3 13.5 185 22-231 199-408 (806)
222 3pxi_A Negative regulator of g 97.9 2.2E-05 7.4E-10 88.5 9.6 156 27-203 491-675 (758)
223 2kjq_A DNAA-related protein; s 97.9 7.8E-06 2.7E-10 71.6 4.6 87 54-172 36-124 (149)
224 3t15_A Ribulose bisphosphate c 97.9 0.00012 4E-09 72.1 13.1 134 52-204 34-199 (293)
225 1io0_A Tropomodulin; LRR prote 97.8 9.6E-06 3.3E-10 74.1 4.1 95 432-526 26-136 (185)
226 2qgz_A Helicase loader, putati 97.7 2.7E-05 9.1E-10 77.3 5.5 63 26-93 123-190 (308)
227 1r6b_X CLPA protein; AAA+, N-t 97.7 6E-05 2E-09 85.0 9.1 165 26-203 457-666 (758)
228 3rw6_A Nuclear RNA export fact 97.7 3.7E-05 1.3E-09 73.9 5.6 79 463-543 167-257 (267)
229 3m6a_A ATP-dependent protease 97.7 0.00014 4.6E-09 78.2 10.5 165 27-203 81-266 (543)
230 3e4g_A ATP synthase subunit S, 97.7 2.6E-05 8.9E-10 69.5 3.9 84 412-501 61-151 (176)
231 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00061 2.1E-08 71.7 14.9 183 22-230 26-236 (499)
232 2r44_A Uncharacterized protein 97.6 6.9E-05 2.3E-09 75.4 7.0 154 25-204 25-199 (331)
233 2cvh_A DNA repair and recombin 97.6 0.00021 7.1E-09 67.0 9.9 87 53-145 19-117 (220)
234 1qvr_A CLPB protein; coiled co 97.5 0.00014 4.8E-09 82.9 8.6 135 28-172 559-710 (854)
235 1ypw_A Transitional endoplasmi 97.5 0.00026 9E-09 79.7 10.4 162 23-204 200-386 (806)
236 1ixz_A ATP-dependent metallopr 97.5 0.00076 2.6E-08 64.8 12.4 183 23-230 12-221 (254)
237 1g5t_A COB(I)alamin adenosyltr 97.4 0.00033 1.1E-08 63.3 7.7 119 53-173 27-163 (196)
238 1iy2_A ATP-dependent metallopr 97.4 0.0025 8.6E-08 62.0 14.2 184 22-230 35-245 (278)
239 1jr3_D DNA polymerase III, del 97.3 0.003 1E-07 63.6 15.0 158 53-236 17-184 (343)
240 3cf2_A TER ATPase, transitiona 97.3 0.00017 5.9E-09 79.9 6.0 184 21-229 471-682 (806)
241 1g8p_A Magnesium-chelatase 38 97.3 0.00018 6.3E-09 72.8 5.6 49 22-76 19-67 (350)
242 2x8a_A Nuclear valosin-contain 97.3 0.0032 1.1E-07 61.0 13.8 160 23-204 6-192 (274)
243 1um8_A ATP-dependent CLP prote 97.3 0.0014 4.7E-08 67.1 11.7 50 27-76 21-94 (376)
244 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00079 2.7E-08 70.9 9.8 43 27-77 22-64 (500)
245 3e4g_A ATP synthase subunit S, 97.2 0.0002 6.9E-09 63.8 4.2 83 442-524 61-150 (176)
246 3io5_A Recombination and repai 97.2 0.0017 6E-08 63.1 11.1 83 56-145 30-123 (333)
247 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00015 5.1E-09 70.9 3.3 71 53-145 122-194 (331)
248 2b8t_A Thymidine kinase; deoxy 97.2 0.0003 1E-08 65.6 5.3 113 53-173 11-126 (223)
249 1n0w_A DNA repair protein RAD5 97.2 0.00062 2.1E-08 64.8 7.6 104 37-145 11-131 (243)
250 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00092 3.2E-08 63.1 7.6 116 53-173 22-168 (235)
251 3hr8_A Protein RECA; alpha and 97.1 0.0012 4.2E-08 66.1 8.5 99 36-145 46-151 (356)
252 1xp8_A RECA protein, recombina 96.9 0.0028 9.6E-08 64.0 9.2 100 35-145 58-164 (366)
253 1v5w_A DMC1, meiotic recombina 96.8 0.0046 1.6E-07 62.1 9.9 69 37-110 109-181 (343)
254 4fs7_A Uncharacterized protein 96.7 0.0023 8E-08 65.8 7.7 127 462-606 249-376 (394)
255 2zr9_A Protein RECA, recombina 96.7 0.0037 1.3E-07 62.8 8.5 99 36-145 46-151 (349)
256 2z43_A DNA repair and recombin 96.7 0.0034 1.2E-07 62.6 8.2 69 37-110 94-166 (324)
257 2i1q_A DNA repair and recombin 96.7 0.0034 1.2E-07 62.6 7.9 70 36-110 84-167 (322)
258 1u94_A RECA protein, recombina 96.6 0.0042 1.4E-07 62.4 7.8 98 36-144 48-152 (356)
259 2dr3_A UPF0273 protein PH0284; 96.5 0.0056 1.9E-07 58.2 8.2 41 53-95 22-62 (247)
260 1ye8_A Protein THEP1, hypothet 96.5 0.0093 3.2E-07 53.5 9.0 22 56-77 2-23 (178)
261 1pzn_A RAD51, DNA repair and r 96.5 0.0036 1.2E-07 63.0 6.9 102 38-144 119-242 (349)
262 4gt6_A Cell surface protein; l 96.5 0.013 4.5E-07 60.1 11.1 124 484-638 260-384 (394)
263 1cr0_A DNA primase/helicase; R 96.4 0.0063 2.2E-07 59.8 7.9 39 53-93 34-73 (296)
264 1rz3_A Hypothetical protein rb 96.4 0.0053 1.8E-07 56.4 6.6 43 31-76 2-44 (201)
265 3upu_A ATP-dependent DNA helic 96.2 0.0043 1.5E-07 65.2 5.7 23 55-77 46-68 (459)
266 2orw_A Thymidine kinase; TMTK, 96.1 0.0014 4.7E-08 59.4 0.9 105 55-172 4-112 (184)
267 3bh0_A DNAB-like replicative h 96.0 0.034 1.2E-06 55.0 11.0 65 35-108 54-118 (315)
268 4a1f_A DNAB helicase, replicat 96.0 0.019 6.4E-07 57.0 9.0 71 30-109 27-97 (338)
269 1mv5_A LMRA, multidrug resista 96.0 0.029 9.8E-07 53.1 10.0 24 53-76 27-50 (243)
270 1nlf_A Regulatory protein REPA 96.0 0.0073 2.5E-07 58.7 5.8 118 53-173 29-181 (279)
271 1vma_A Cell division protein F 96.0 0.017 6E-07 56.6 8.5 110 33-144 81-197 (306)
272 3lda_A DNA repair protein RAD5 96.0 0.0099 3.4E-07 60.7 6.8 70 36-110 164-237 (400)
273 4fs7_A Uncharacterized protein 95.9 0.017 5.9E-07 59.2 8.7 145 437-601 248-393 (394)
274 3tqc_A Pantothenate kinase; bi 95.9 0.018 6.2E-07 56.7 8.3 45 30-76 70-114 (321)
275 3hws_A ATP-dependent CLP prote 95.8 0.0056 1.9E-07 62.1 4.4 50 28-77 16-74 (363)
276 4a74_A DNA repair and recombin 95.8 0.024 8.2E-07 53.0 8.5 45 53-97 24-72 (231)
277 2px0_A Flagellar biosynthesis 95.8 0.019 6.6E-07 56.1 7.9 87 53-142 104-191 (296)
278 3ice_A Transcription terminati 95.8 0.011 3.8E-07 59.0 6.1 41 53-95 173-215 (422)
279 3cmu_A Protein RECA, recombina 95.7 0.016 5.4E-07 70.2 7.9 96 37-143 1413-1515(2050)
280 3c8u_A Fructokinase; YP_612366 95.7 0.0076 2.6E-07 55.7 4.2 40 34-77 6-45 (208)
281 2ff7_A Alpha-hemolysin translo 95.6 0.018 6.2E-07 54.7 6.8 24 53-76 34-57 (247)
282 1qhx_A CPT, protein (chloramph 95.6 0.0052 1.8E-07 55.1 2.8 22 55-76 4-25 (178)
283 1tue_A Replication protein E1; 95.6 0.0061 2.1E-07 55.3 3.1 43 30-77 39-81 (212)
284 3dm5_A SRP54, signal recogniti 95.6 0.074 2.5E-06 54.6 11.5 39 53-93 99-137 (443)
285 1gvn_B Zeta; postsegregational 95.6 0.01 3.4E-07 57.9 4.8 26 51-76 30-55 (287)
286 1zp6_A Hypothetical protein AT 95.5 0.0072 2.5E-07 54.9 3.2 24 53-76 8-31 (191)
287 3e70_C DPA, signal recognition 95.4 0.07 2.4E-06 52.8 10.4 57 52-110 127-184 (328)
288 1sky_E F1-ATPase, F1-ATP synth 95.4 0.043 1.5E-06 56.6 8.9 50 55-106 152-203 (473)
289 2yvu_A Probable adenylyl-sulfa 95.4 0.015 5.1E-07 52.5 5.0 26 52-77 11-36 (186)
290 1ly1_A Polynucleotide kinase; 95.4 0.008 2.7E-07 53.9 3.1 23 54-76 2-24 (181)
291 3kl4_A SRP54, signal recogniti 95.3 0.055 1.9E-06 55.6 9.6 90 53-144 96-190 (433)
292 3kb2_A SPBC2 prophage-derived 95.3 0.0075 2.6E-07 53.6 2.6 22 55-76 2-23 (173)
293 3lw7_A Adenylate kinase relate 95.2 0.0085 2.9E-07 53.4 2.9 20 55-74 2-21 (179)
294 4akg_A Glutathione S-transfera 95.2 0.16 5.3E-06 63.9 14.7 140 54-203 1267-1431(2695)
295 2q6t_A DNAB replication FORK h 95.2 0.055 1.9E-06 56.3 9.3 65 36-108 187-251 (444)
296 1q57_A DNA primase/helicase; d 95.2 0.056 1.9E-06 57.3 9.5 52 53-108 241-293 (503)
297 1nks_A Adenylate kinase; therm 95.2 0.015 5.1E-07 52.8 4.3 23 55-77 2-24 (194)
298 4h09_A Hypothetical leucine ri 95.1 0.052 1.8E-06 55.2 8.9 127 406-543 211-339 (379)
299 3uie_A Adenylyl-sulfate kinase 95.1 0.012 4E-07 54.1 3.5 25 53-77 24-48 (200)
300 1kgd_A CASK, peripheral plasma 95.1 0.0093 3.2E-07 53.7 2.8 23 54-76 5-27 (180)
301 3tlx_A Adenylate kinase 2; str 95.1 0.016 5.4E-07 55.0 4.5 42 31-76 10-51 (243)
302 3tau_A Guanylate kinase, GMP k 95.1 0.0096 3.3E-07 55.0 2.9 24 53-76 7-30 (208)
303 3vaa_A Shikimate kinase, SK; s 95.1 0.0094 3.2E-07 54.6 2.8 23 54-76 25-47 (199)
304 1odf_A YGR205W, hypothetical 3 95.1 0.02 6.9E-07 55.7 5.3 27 51-77 28-54 (290)
305 2rhm_A Putative kinase; P-loop 95.1 0.012 3.9E-07 53.6 3.3 24 53-76 4-27 (193)
306 3jvv_A Twitching mobility prot 95.0 0.0092 3.1E-07 60.0 2.6 111 53-175 122-233 (356)
307 3trf_A Shikimate kinase, SK; a 95.0 0.01 3.4E-07 53.6 2.7 23 54-76 5-27 (185)
308 1zu4_A FTSY; GTPase, signal re 95.0 0.098 3.4E-06 51.6 10.0 41 52-94 103-143 (320)
309 1kag_A SKI, shikimate kinase I 95.0 0.0087 3E-07 53.3 2.2 22 55-76 5-26 (173)
310 2r6a_A DNAB helicase, replicat 95.0 0.072 2.5E-06 55.6 9.4 51 53-106 202-252 (454)
311 1ex7_A Guanylate kinase; subst 94.9 0.0092 3.1E-07 53.8 2.1 22 55-76 2-23 (186)
312 4gp7_A Metallophosphoesterase; 94.9 0.013 4.4E-07 52.2 3.0 24 53-76 8-31 (171)
313 3bgw_A DNAB-like replicative h 94.9 0.12 4.1E-06 53.6 10.7 64 36-108 184-247 (444)
314 4eun_A Thermoresistant glucoki 94.8 0.012 4.2E-07 53.9 2.8 35 53-94 28-62 (200)
315 4h09_A Hypothetical leucine ri 94.8 0.082 2.8E-06 53.7 9.3 127 438-573 213-341 (379)
316 2r2a_A Uncharacterized protein 94.8 0.021 7.3E-07 52.0 4.3 21 55-75 6-26 (199)
317 3t61_A Gluconokinase; PSI-biol 94.8 0.01 3.5E-07 54.5 2.2 23 54-76 18-40 (202)
318 3tr0_A Guanylate kinase, GMP k 94.8 0.013 4.5E-07 53.8 2.9 23 54-76 7-29 (205)
319 1knq_A Gluconate kinase; ALFA/ 94.8 0.017 5.8E-07 51.5 3.5 24 53-76 7-30 (175)
320 1j8m_F SRP54, signal recogniti 94.8 0.13 4.6E-06 50.0 10.2 90 54-145 98-192 (297)
321 2ga8_A Hypothetical 39.9 kDa p 94.8 0.021 7.3E-07 56.6 4.4 46 30-77 2-47 (359)
322 2j37_W Signal recognition part 94.8 0.2 7E-06 52.5 12.1 56 37-94 81-139 (504)
323 3umf_A Adenylate kinase; rossm 94.7 0.014 4.8E-07 54.0 2.9 26 51-76 26-51 (217)
324 3zvl_A Bifunctional polynucleo 94.7 0.075 2.6E-06 54.7 8.7 25 52-76 256-280 (416)
325 2plr_A DTMP kinase, probable t 94.7 0.032 1.1E-06 51.4 5.3 24 54-77 4-27 (213)
326 1nn5_A Similar to deoxythymidy 94.7 0.02 6.9E-07 52.9 4.0 24 54-77 9-32 (215)
327 3asz_A Uridine kinase; cytidin 94.7 0.016 5.4E-07 53.6 3.2 25 52-76 4-28 (211)
328 2ze6_A Isopentenyl transferase 94.7 0.016 5.3E-07 55.4 3.1 22 55-76 2-23 (253)
329 3a00_A Guanylate kinase, GMP k 94.6 0.012 3.9E-07 53.4 2.0 22 55-76 2-23 (186)
330 3ney_A 55 kDa erythrocyte memb 94.6 0.015 5.2E-07 52.8 2.8 24 53-76 18-41 (197)
331 3dzd_A Transcriptional regulat 94.6 0.12 4E-06 52.3 9.7 160 27-199 129-312 (368)
332 1y63_A LMAJ004144AAA protein; 94.6 0.016 5.4E-07 52.3 2.9 24 53-76 9-32 (184)
333 1kht_A Adenylate kinase; phosp 94.6 0.014 4.9E-07 52.8 2.6 22 55-76 4-25 (192)
334 3iij_A Coilin-interacting nucl 94.6 0.013 4.6E-07 52.5 2.3 23 54-76 11-33 (180)
335 2qor_A Guanylate kinase; phosp 94.6 0.013 4.3E-07 54.0 2.2 24 53-76 11-34 (204)
336 2z0h_A DTMP kinase, thymidylat 94.6 0.045 1.5E-06 49.7 6.0 22 56-77 2-23 (197)
337 1ukz_A Uridylate kinase; trans 94.6 0.019 6.6E-07 52.6 3.5 25 52-76 13-37 (203)
338 2qt1_A Nicotinamide riboside k 94.6 0.019 6.5E-07 52.9 3.4 24 53-76 20-43 (207)
339 2j41_A Guanylate kinase; GMP, 94.6 0.016 5.5E-07 53.3 2.9 24 53-76 5-28 (207)
340 1tev_A UMP-CMP kinase; ploop, 94.5 0.018 6.1E-07 52.3 3.1 23 54-76 3-25 (196)
341 3cm0_A Adenylate kinase; ATP-b 94.5 0.02 6.7E-07 51.7 3.3 23 54-76 4-26 (186)
342 1pgv_A TMD-1, tropomodulin TMD 94.5 0.068 2.3E-06 48.3 6.8 86 438-523 66-167 (197)
343 2p5t_B PEZT; postsegregational 94.5 0.028 9.5E-07 53.7 4.5 26 51-76 29-54 (253)
344 2pbr_A DTMP kinase, thymidylat 94.5 0.052 1.8E-06 49.1 6.2 21 56-76 2-22 (195)
345 2bdt_A BH3686; alpha-beta prot 94.5 0.019 6.4E-07 52.0 3.1 22 55-76 3-24 (189)
346 3e1s_A Exodeoxyribonuclease V, 94.5 0.033 1.1E-06 59.9 5.5 105 54-171 204-314 (574)
347 3llm_A ATP-dependent RNA helic 94.5 0.15 5.2E-06 47.8 9.5 23 54-76 76-98 (235)
348 3cmu_A Protein RECA, recombina 94.5 0.059 2E-06 65.3 7.9 102 33-145 365-473 (2050)
349 2c95_A Adenylate kinase 1; tra 94.4 0.018 6E-07 52.4 2.8 24 53-76 8-31 (196)
350 4gt6_A Cell surface protein; l 94.4 0.05 1.7E-06 55.7 6.5 101 438-543 261-363 (394)
351 3b5x_A Lipid A export ATP-bind 94.4 0.18 6E-06 54.5 11.1 24 53-76 368-391 (582)
352 3fwy_A Light-independent proto 94.4 0.039 1.3E-06 54.3 5.3 42 52-95 46-87 (314)
353 3l0o_A Transcription terminati 94.4 0.018 6.3E-07 57.3 2.9 53 35-94 161-215 (427)
354 1xjc_A MOBB protein homolog; s 94.4 0.03 1E-06 49.4 4.0 25 53-77 3-27 (169)
355 2ck3_D ATP synthase subunit be 94.4 0.14 4.9E-06 52.6 9.5 65 38-108 142-207 (482)
356 2pt7_A CAG-ALFA; ATPase, prote 94.3 0.046 1.6E-06 54.3 5.8 104 55-173 172-275 (330)
357 1lvg_A Guanylate kinase, GMP k 94.3 0.015 5.1E-07 53.2 2.1 23 54-76 4-26 (198)
358 2hf9_A Probable hydrogenase ni 94.3 0.031 1E-06 52.2 4.3 41 31-77 21-61 (226)
359 3k1j_A LON protease, ATP-depen 94.3 0.02 6.7E-07 62.4 3.3 42 27-76 41-82 (604)
360 3rfe_A Platelet glycoprotein I 94.3 0.066 2.3E-06 45.0 5.9 53 446-500 12-66 (130)
361 3hjn_A DTMP kinase, thymidylat 94.3 0.094 3.2E-06 47.7 7.4 50 56-107 2-51 (197)
362 1uf9_A TT1252 protein; P-loop, 94.3 0.023 7.9E-07 52.0 3.2 25 52-76 6-30 (203)
363 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.022 7.6E-07 54.6 3.2 24 54-77 4-27 (260)
364 1ls1_A Signal recognition part 94.3 0.095 3.2E-06 51.1 7.8 90 53-144 97-191 (295)
365 2cdn_A Adenylate kinase; phosp 94.3 0.022 7.5E-07 52.2 3.0 24 53-76 19-42 (201)
366 2ffh_A Protein (FFH); SRP54, s 94.3 0.11 3.9E-06 53.1 8.6 40 53-94 97-136 (425)
367 1ny5_A Transcriptional regulat 94.3 0.06 2E-06 54.9 6.6 134 27-172 137-281 (387)
368 3cmw_A Protein RECA, recombina 94.3 0.057 1.9E-06 64.6 7.1 99 36-145 368-473 (1706)
369 1zuh_A Shikimate kinase; alpha 94.2 0.02 6.9E-07 50.7 2.7 24 53-76 6-29 (168)
370 1aky_A Adenylate kinase; ATP:A 94.2 0.02 7E-07 53.2 2.8 24 53-76 3-26 (220)
371 1g41_A Heat shock protein HSLU 94.2 0.027 9.1E-07 58.0 3.8 51 26-76 14-72 (444)
372 1qf9_A UMP/CMP kinase, protein 94.2 0.027 9.2E-07 51.0 3.5 24 53-76 5-28 (194)
373 1s96_A Guanylate kinase, GMP k 94.2 0.021 7.1E-07 53.1 2.8 24 53-76 15-38 (219)
374 1jjv_A Dephospho-COA kinase; P 94.2 0.025 8.6E-07 52.0 3.2 22 55-76 3-24 (206)
375 2j9r_A Thymidine kinase; TK1, 94.1 0.053 1.8E-06 49.6 5.2 111 53-174 27-139 (214)
376 1via_A Shikimate kinase; struc 94.1 0.021 7.3E-07 50.9 2.6 21 56-76 6-26 (175)
377 3rfe_A Platelet glycoprotein I 94.1 0.08 2.7E-06 44.5 6.0 55 469-526 11-68 (130)
378 2bwj_A Adenylate kinase 5; pho 94.1 0.021 7.1E-07 52.1 2.6 23 54-76 12-34 (199)
379 1htw_A HI0065; nucleotide-bind 94.1 0.03 1E-06 49.0 3.4 24 53-76 32-55 (158)
380 3cmw_A Protein RECA, recombina 94.1 0.055 1.9E-06 64.7 6.5 86 52-144 1429-1520(1706)
381 2r8r_A Sensor protein; KDPD, P 94.1 0.063 2.2E-06 49.5 5.6 43 53-97 5-47 (228)
382 2wwf_A Thymidilate kinase, put 94.0 0.023 7.9E-07 52.4 2.7 25 53-77 9-33 (212)
383 2vli_A Antibiotic resistance p 94.0 0.017 5.8E-07 51.9 1.7 23 54-76 5-27 (183)
384 1sq5_A Pantothenate kinase; P- 94.0 0.051 1.7E-06 53.5 5.3 24 53-76 79-102 (308)
385 1uj2_A Uridine-cytidine kinase 94.0 0.027 9.3E-07 53.7 3.2 25 52-76 20-44 (252)
386 3end_A Light-independent proto 94.0 0.06 2.1E-06 53.0 5.8 46 51-98 38-83 (307)
387 2jeo_A Uridine-cytidine kinase 94.0 0.029 9.8E-07 53.3 3.3 24 53-76 24-47 (245)
388 1znw_A Guanylate kinase, GMP k 94.0 0.025 8.6E-07 52.1 2.8 24 53-76 19-42 (207)
389 1pgv_A TMD-1, tropomodulin TMD 94.0 0.067 2.3E-06 48.4 5.5 92 432-523 31-136 (197)
390 1e6c_A Shikimate kinase; phosp 93.9 0.02 6.9E-07 50.8 2.1 22 55-76 3-24 (173)
391 2jaq_A Deoxyguanosine kinase; 93.9 0.026 8.8E-07 51.7 2.8 21 56-76 2-22 (205)
392 2if2_A Dephospho-COA kinase; a 93.9 0.026 8.8E-07 51.8 2.8 21 56-76 3-23 (204)
393 1z6g_A Guanylate kinase; struc 93.9 0.021 7.3E-07 53.1 2.2 24 53-76 22-45 (218)
394 2bbw_A Adenylate kinase 4, AK4 93.9 0.025 8.6E-07 53.7 2.8 23 54-76 27-49 (246)
395 1cke_A CK, MSSA, protein (cyti 93.8 0.027 9.4E-07 52.6 2.9 22 55-76 6-27 (227)
396 3aez_A Pantothenate kinase; tr 93.8 0.031 1.1E-06 55.1 3.3 25 52-76 88-112 (312)
397 2iyv_A Shikimate kinase, SK; t 93.8 0.027 9.1E-07 50.7 2.6 22 55-76 3-24 (184)
398 2pez_A Bifunctional 3'-phospho 93.8 0.033 1.1E-06 49.8 3.2 25 53-77 4-28 (179)
399 2pt5_A Shikimate kinase, SK; a 93.8 0.03 1E-06 49.5 2.8 21 56-76 2-22 (168)
400 1tf7_A KAIC; homohexamer, hexa 93.8 0.037 1.3E-06 59.0 4.1 40 53-94 280-319 (525)
401 2wsm_A Hydrogenase expression/ 93.8 0.04 1.4E-06 51.2 3.8 43 29-77 11-53 (221)
402 1zd8_A GTP:AMP phosphotransfer 93.7 0.027 9.3E-07 52.7 2.6 24 53-76 6-29 (227)
403 4b3f_X DNA-binding protein smu 93.7 0.14 4.6E-06 56.2 8.6 63 33-106 192-254 (646)
404 1u0j_A DNA replication protein 93.7 0.045 1.5E-06 52.0 4.1 37 36-76 90-126 (267)
405 2v54_A DTMP kinase, thymidylat 93.7 0.032 1.1E-06 51.1 2.9 23 54-76 4-26 (204)
406 3fb4_A Adenylate kinase; psych 93.6 0.032 1.1E-06 51.7 2.9 21 56-76 2-22 (216)
407 2ehv_A Hypothetical protein PH 93.6 0.044 1.5E-06 52.0 3.9 41 53-94 29-69 (251)
408 3a8t_A Adenylate isopentenyltr 93.6 0.039 1.3E-06 54.4 3.5 24 53-76 39-62 (339)
409 2qmh_A HPR kinase/phosphorylas 93.6 0.036 1.2E-06 49.9 3.0 24 54-77 34-57 (205)
410 2yhs_A FTSY, cell division pro 93.6 0.17 5.9E-06 52.5 8.4 41 52-95 291-331 (503)
411 1fx0_B ATP synthase beta chain 93.6 0.083 2.9E-06 54.6 6.0 65 38-108 154-219 (498)
412 2f6r_A COA synthase, bifunctio 93.5 0.037 1.3E-06 53.7 3.3 23 53-75 74-96 (281)
413 2fz4_A DNA repair protein RAD2 93.5 0.33 1.1E-05 45.5 9.8 122 30-171 93-227 (237)
414 3dl0_A Adenylate kinase; phosp 93.5 0.034 1.2E-06 51.5 2.9 21 56-76 2-22 (216)
415 2grj_A Dephospho-COA kinase; T 93.5 0.042 1.4E-06 49.8 3.4 24 53-76 11-34 (192)
416 1m7g_A Adenylylsulfate kinase; 93.5 0.041 1.4E-06 50.8 3.4 25 53-77 24-48 (211)
417 2ged_A SR-beta, signal recogni 93.5 0.05 1.7E-06 49.1 3.9 25 52-76 46-70 (193)
418 2zts_A Putative uncharacterize 93.5 0.047 1.6E-06 51.7 3.9 42 53-95 29-70 (251)
419 2xxa_A Signal recognition part 93.5 0.3 1E-05 50.2 10.1 59 35-95 78-140 (433)
420 1zak_A Adenylate kinase; ATP:A 93.4 0.029 1E-06 52.3 2.2 24 53-76 4-27 (222)
421 3foz_A TRNA delta(2)-isopenten 93.3 0.045 1.5E-06 53.1 3.4 24 53-76 9-32 (316)
422 2eyu_A Twitching motility prot 93.3 0.065 2.2E-06 51.3 4.5 24 53-76 24-47 (261)
423 3p32_A Probable GTPase RV1496/ 93.3 0.12 4.2E-06 51.9 6.8 26 52-77 77-102 (355)
424 4e22_A Cytidylate kinase; P-lo 93.3 0.038 1.3E-06 52.7 2.8 24 53-76 26-49 (252)
425 3lnc_A Guanylate kinase, GMP k 93.3 0.024 8.3E-07 53.2 1.4 23 53-75 26-48 (231)
426 1vht_A Dephospho-COA kinase; s 93.2 0.046 1.6E-06 50.7 3.3 22 54-75 4-25 (218)
427 4eaq_A DTMP kinase, thymidylat 93.2 0.076 2.6E-06 49.7 4.8 25 53-77 25-49 (229)
428 3exa_A TRNA delta(2)-isopenten 93.2 0.045 1.5E-06 53.2 3.2 23 54-76 3-25 (322)
429 3crm_A TRNA delta(2)-isopenten 93.2 0.047 1.6E-06 53.6 3.3 23 54-76 5-27 (323)
430 1rj9_A FTSY, signal recognitio 93.1 0.059 2E-06 52.8 3.9 25 53-77 101-125 (304)
431 3b60_A Lipid A export ATP-bind 93.1 0.14 4.7E-06 55.4 7.2 24 53-76 368-391 (582)
432 1xx6_A Thymidine kinase; NESG, 93.0 0.023 7.8E-07 51.4 0.8 110 53-173 7-118 (191)
433 1a7j_A Phosphoribulokinase; tr 93.0 0.025 8.7E-07 55.1 1.2 24 53-76 4-27 (290)
434 3d3q_A TRNA delta(2)-isopenten 92.9 0.05 1.7E-06 53.8 3.1 22 55-76 8-29 (340)
435 3f9v_A Minichromosome maintena 92.9 0.042 1.4E-06 59.4 2.8 51 27-77 295-350 (595)
436 4edh_A DTMP kinase, thymidylat 92.9 0.16 5.5E-06 46.7 6.4 24 54-77 6-29 (213)
437 1gtv_A TMK, thymidylate kinase 92.9 0.025 8.5E-07 52.3 0.8 22 56-77 2-23 (214)
438 3tif_A Uncharacterized ABC tra 92.8 0.049 1.7E-06 51.2 2.8 24 53-76 30-53 (235)
439 3qf4_A ABC transporter, ATP-bi 92.8 0.26 8.9E-06 53.2 8.9 24 53-76 368-391 (587)
440 3ld9_A DTMP kinase, thymidylat 92.8 0.16 5.3E-06 47.1 6.1 27 51-77 18-44 (223)
441 1w36_D RECD, exodeoxyribonucle 92.8 0.17 5.6E-06 55.0 7.3 46 54-99 164-210 (608)
442 3sr0_A Adenylate kinase; phosp 92.8 0.046 1.6E-06 50.2 2.4 75 56-144 2-85 (206)
443 3b9q_A Chloroplast SRP recepto 92.7 0.084 2.9E-06 51.6 4.4 26 52-77 98-123 (302)
444 1np6_A Molybdopterin-guanine d 92.7 0.096 3.3E-06 46.5 4.4 25 53-77 5-29 (174)
445 2og2_A Putative signal recogni 92.7 0.14 4.7E-06 51.3 6.0 26 52-77 155-180 (359)
446 3r20_A Cytidylate kinase; stru 92.6 0.052 1.8E-06 50.7 2.7 23 54-76 9-31 (233)
447 2onk_A Molybdate/tungstate ABC 92.6 0.054 1.8E-06 51.1 2.8 23 53-76 24-46 (240)
448 1e4v_A Adenylate kinase; trans 92.6 0.055 1.9E-06 50.0 2.8 21 56-76 2-22 (214)
449 3be4_A Adenylate kinase; malar 92.6 0.048 1.7E-06 50.6 2.4 22 55-76 6-27 (217)
450 3ake_A Cytidylate kinase; CMP 92.6 0.057 2E-06 49.5 2.9 21 56-76 4-24 (208)
451 1ltq_A Polynucleotide kinase; 92.6 0.059 2E-06 52.8 3.1 22 55-76 3-24 (301)
452 3iqw_A Tail-anchored protein t 92.5 0.12 4.2E-06 51.2 5.4 48 52-101 14-61 (334)
453 2xb4_A Adenylate kinase; ATP-b 92.5 0.058 2E-06 50.3 2.8 21 56-76 2-22 (223)
454 2cbz_A Multidrug resistance-as 92.5 0.058 2E-06 50.8 2.8 25 53-77 30-54 (237)
455 2pcj_A ABC transporter, lipopr 92.5 0.05 1.7E-06 50.7 2.4 24 53-76 29-52 (224)
456 3io3_A DEHA2D07832P; chaperone 92.5 0.12 4.3E-06 51.5 5.3 46 53-100 17-64 (348)
457 1ak2_A Adenylate kinase isoenz 92.4 0.061 2.1E-06 50.5 2.9 23 54-76 16-38 (233)
458 2f1r_A Molybdopterin-guanine d 92.4 0.039 1.3E-06 48.9 1.4 23 55-77 3-25 (171)
459 1svm_A Large T antigen; AAA+ f 92.3 0.062 2.1E-06 54.3 2.9 24 53-76 168-191 (377)
460 2i3b_A HCR-ntpase, human cance 92.3 0.054 1.8E-06 48.9 2.3 23 56-78 3-25 (189)
461 2zej_A Dardarin, leucine-rich 92.3 0.066 2.3E-06 48.0 2.9 22 56-77 4-25 (184)
462 2ck3_A ATP synthase subunit al 92.3 0.18 6.3E-06 52.2 6.4 87 54-142 162-271 (510)
463 2wji_A Ferrous iron transport 92.3 0.086 2.9E-06 46.3 3.5 24 54-77 3-26 (165)
464 1cp2_A CP2, nitrogenase iron p 92.3 0.13 4.4E-06 49.3 5.1 41 55-97 2-42 (269)
465 4a82_A Cystic fibrosis transme 92.2 0.15 5E-06 55.1 6.0 24 53-76 366-389 (578)
466 1b0u_A Histidine permease; ABC 92.2 0.065 2.2E-06 51.3 2.8 24 53-76 31-54 (262)
467 3v9p_A DTMP kinase, thymidylat 92.2 0.16 5.5E-06 47.2 5.4 25 53-77 24-48 (227)
468 2v9p_A Replication protein E1; 92.2 0.064 2.2E-06 52.3 2.7 24 53-76 125-148 (305)
469 2vp4_A Deoxynucleoside kinase; 92.1 0.082 2.8E-06 49.5 3.4 26 51-76 17-42 (230)
470 3nwj_A ATSK2; P loop, shikimat 92.1 0.052 1.8E-06 51.4 2.0 23 54-76 48-70 (250)
471 1ypw_A Transitional endoplasmi 92.1 0.067 2.3E-06 60.1 3.1 57 21-77 471-534 (806)
472 2olj_A Amino acid ABC transpor 92.1 0.07 2.4E-06 51.0 2.8 24 53-76 49-72 (263)
473 2yl4_A ATP-binding cassette SU 92.0 0.15 5E-06 55.3 5.7 24 53-76 369-392 (595)
474 2afh_E Nitrogenase iron protei 92.0 0.15 5.1E-06 49.5 5.3 41 55-97 3-43 (289)
475 3b85_A Phosphate starvation-in 92.0 0.06 2.1E-06 49.5 2.2 24 54-77 22-45 (208)
476 2gk6_A Regulator of nonsense t 92.0 0.27 9.1E-06 53.6 7.7 50 55-106 196-245 (624)
477 2xau_A PRE-mRNA-splicing facto 91.9 0.67 2.3E-05 51.7 10.9 23 54-76 109-131 (773)
478 3lv8_A DTMP kinase, thymidylat 91.9 0.2 6.9E-06 46.9 5.7 24 54-77 27-50 (236)
479 3eph_A TRNA isopentenyltransfe 91.8 0.081 2.8E-06 53.4 3.1 23 54-76 2-24 (409)
480 2ghi_A Transport protein; mult 91.8 0.077 2.6E-06 50.7 2.8 24 53-76 45-68 (260)
481 1sgw_A Putative ABC transporte 91.8 0.058 2E-06 49.8 1.9 24 53-76 34-57 (214)
482 2qe7_A ATP synthase subunit al 91.8 0.29 9.7E-06 50.7 7.2 84 53-142 161-263 (502)
483 1ji0_A ABC transporter; ATP bi 91.8 0.07 2.4E-06 50.3 2.5 24 53-76 31-54 (240)
484 1vpl_A ABC transporter, ATP-bi 91.8 0.078 2.7E-06 50.5 2.8 24 53-76 40-63 (256)
485 3gfo_A Cobalt import ATP-bindi 91.8 0.082 2.8E-06 50.9 3.0 24 53-76 33-56 (275)
486 1p5z_B DCK, deoxycytidine kina 91.8 0.074 2.5E-06 51.0 2.7 25 53-77 23-47 (263)
487 1g6h_A High-affinity branched- 91.8 0.07 2.4E-06 50.9 2.5 24 53-76 32-55 (257)
488 2pze_A Cystic fibrosis transme 91.8 0.071 2.4E-06 49.9 2.4 24 53-76 33-56 (229)
489 4g1u_C Hemin import ATP-bindin 91.7 0.07 2.4E-06 51.2 2.4 24 53-76 36-59 (266)
490 2r9v_A ATP synthase subunit al 91.7 0.19 6.6E-06 52.0 5.8 83 54-142 175-276 (515)
491 2ixe_A Antigen peptide transpo 91.7 0.081 2.8E-06 50.9 2.8 24 53-76 44-67 (271)
492 1g8f_A Sulfate adenylyltransfe 91.7 0.13 4.5E-06 54.0 4.6 46 28-77 373-418 (511)
493 1oix_A RAS-related protein RAB 91.6 0.1 3.5E-06 47.1 3.3 23 54-76 29-51 (191)
494 1yrb_A ATP(GTP)binding protein 91.6 0.19 6.4E-06 47.9 5.4 27 51-77 11-37 (262)
495 2zu0_C Probable ATP-dependent 91.6 0.081 2.8E-06 50.8 2.7 24 53-76 45-68 (267)
496 1tq4_A IIGP1, interferon-induc 91.6 0.098 3.3E-06 53.4 3.4 24 53-76 68-91 (413)
497 3tqf_A HPR(Ser) kinase; transf 91.5 0.1 3.5E-06 45.7 3.0 23 54-76 16-38 (181)
498 2yz2_A Putative ABC transporte 91.5 0.088 3E-06 50.5 2.8 24 53-76 32-55 (266)
499 4tmk_A Protein (thymidylate ki 91.5 0.25 8.7E-06 45.4 5.9 52 55-107 4-55 (213)
500 1q3t_A Cytidylate kinase; nucl 91.5 0.091 3.1E-06 49.4 2.9 25 52-76 14-38 (236)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.2e-41 Score=365.60 Aligned_cols=316 Identities=19% Similarity=0.257 Sum_probs=245.2
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC--hhhHHhcCCceEEEEeCCCC--chHHHHHHH
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN--HDEVKRQFDKILWVCVSETF--DEFRIAKAM 105 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 105 (639)
|||++++++|.++|.... .+..++|+|+|+||+||||||+++++ +.+...+|+.++||++++.. +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 499999999999997543 33579999999999999999999996 45788999999999998875 788999999
Q ss_pred HHHccCCCC-------CcccHHHHHHHHHHhcCCc-eEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHHh
Q 006588 106 LEALTGSTS-------NLDALQSLLISIDESIAGK-RFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIAS 177 (639)
Q Consensus 106 l~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~~ 177 (639)
+.+++.... ...+.+.+...+.+.+.++ ++||||||+|+.++. .++. .+||+||||||++.+..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-------~~~~-~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-------RWAQ-ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-------HHHH-HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-------cccc-cCCCEEEEEcCCHHHHH
Confidence 999976521 1234566788899999996 999999999985322 1221 27899999999998877
Q ss_pred hhc-ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHcCc
Q 006588 178 MMR-STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEEEWKRILNSD 256 (639)
Q Consensus 178 ~~~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~ 256 (639)
.++ ....+++++|+.++|++||.+.++.... .+...+.+.+|+++|+|+||||+++|+.++.+ .. .|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 654 3357999999999999999999865432 34566779999999999999999999999765 22 233333321
Q ss_pred ccchhhccccchhhHHhhhhCCchhhHHHHh-----------hhccCCCCCccChHHHHHHHHHc--CCCCCcC-cccHH
Q 006588 257 LWKVEEIEKGFLTPLWLSYNDLPSRVKRCFS-----------YCAVFPKDYNIEKDKLITLWMAQ--GYLSAEE-DEELE 322 (639)
Q Consensus 257 ~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~-----------~la~f~~~~~i~~~~l~~~w~~~--g~~~~~~-~~~~~ 322 (639)
.... ....+..++..||+.|+.+.+.||. +||+||+++.++ +..|+++ |++.... ....+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 1111 2356778888889988888888888 999999999988 7899999 8887665 44566
Q ss_pred HHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHHHHhccccee
Q 006588 323 TIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQFVSENECL 371 (639)
Q Consensus 323 ~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~~~~~~~~~ 371 (639)
++++ ++++|+++||++....+ ...+|.||+++|+||+.++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 6666 99999999999976543 334799999999999998877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.7e-33 Score=338.63 Aligned_cols=317 Identities=20% Similarity=0.274 Sum_probs=243.9
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH-HhcC-CceEEEEeCCCC--
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV-KRQF-DKILWVCVSETF-- 96 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~-- 96 (639)
..|..+..||||++++++|.++|.... +..++|+|+|+||+||||||++++++... ..+| +.++|+++++..
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 355667789999999999999997543 36799999999999999999999997543 4446 678899998744
Q ss_pred chHHHHHHHHHHccCCCC----CcccHHHHHHHHHHhcCCc--eEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEc
Q 006588 97 DEFRIAKAMLEALTGSTS----NLDALQSLLISIDESIAGK--RFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITT 170 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~~--~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTs 170 (639)
.....+..++..+..... .....+++.+.++..+.++ |+||||||+|+.. .+....++++|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------~~~~~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------VLKAFDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------HHTTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------HHHhhcCCCEEEEEc
Confidence 334456677777765431 2356788888888888877 9999999998752 233346799999999
Q ss_pred cchHHHhh-hcccceEECCC-CCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCC-CCHH
Q 006588 171 RNESIASM-MRSTDVISIKE-LAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSK-KTEE 247 (639)
Q Consensus 171 r~~~~~~~-~~~~~~~~l~~-l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~ 247 (639)
|++.+... ......+++.. |+.+||++||...+..... ...+.+.+|+++|+|+||||+++|++++.. ....
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~-----~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~ 339 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE-----DLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWA 339 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCST-----TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHH
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChh-----hCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHH
Confidence 99987743 34567899996 9999999999988853322 122348999999999999999999999876 3333
Q ss_pred HHHHHHcCcccc-hhh----ccccchhhHHhhhhCCchhhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcCcccHH
Q 006588 248 EWKRILNSDLWK-VEE----IEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEEDEELE 322 (639)
Q Consensus 248 ~~~~~l~~~~~~-~~~----~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~ 322 (639)
++...+...... +.. ....+..++..||+.|++++|.||++||+||+++.|+...++..|.++ .
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~ 408 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------T 408 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------H
T ss_pred HHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------H
Confidence 333333322211 111 113588999999999999999999999999999999999999999433 3
Q ss_pred HHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHHHHhcccc
Q 006588 323 TIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQFVSENE 369 (639)
Q Consensus 323 ~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~~~~~~~ 369 (639)
+.++.+++.|+++||++... ++...+|+||+++|+|++.++.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 56788899999999998643 344457999999999999887665
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.3e-34 Score=312.72 Aligned_cols=284 Identities=18% Similarity=0.211 Sum_probs=219.7
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCc-eEEEEeCCCCchHHHHHHHHH
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDK-ILWVCVSETFDEFRIAKAMLE 107 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~il~ 107 (639)
.|||++++++|.++|.... +.++|+|+|+||+||||||++++++.+...+|+. ++|+++++..+...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997432 4789999999999999999999987678889975 999999998888888888777
Q ss_pred HccCCC-------C----CcccHHHHHHHHHHhc---CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 108 ALTGST-------S----NLDALQSLLISIDESI---AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 108 ~l~~~~-------~----~~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.+.... . ...+.++....+...+ .++++||||||+|+.+ .|. .++ +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~e--qLe----~f~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWN----AFN---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHH--HHH----HHH---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHH--HHH----hhC---CCeEEEEeccCh
Confidence 543210 0 0123455566666654 6899999999998832 222 222 689999999998
Q ss_pred HHHhhhcccceEECC------CCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCC-CCH
Q 006588 174 SIASMMRSTDVISIK------ELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSK-KTE 246 (639)
Q Consensus 174 ~~~~~~~~~~~~~l~------~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~ 246 (639)
.+...+.....+.++ +|+.+||++||.+..... . . +... +.|+|+||||+++|++++.+ ...
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-~-e------eL~~---eICgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-P-Q------DLPR---EVLTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-T-T------THHH---HHCCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-H-H------HHHH---HHhCCCHHHHHHHHHHHhCCCCCH
Confidence 877543333345555 899999999999985322 1 1 1123 34999999999999999877 467
Q ss_pred HHHHHHHcCcccchhhccccchhhHHhhhhCCchhh-HHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcCcccHHHHH
Q 006588 247 EEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRV-KRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEEDEELETIG 325 (639)
Q Consensus 247 ~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~-~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~ 325 (639)
+.|... ....+..+++.||+.|+++. |.||++||+||+++.|+...+...|.++| ++.+
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 888752 13468899999999999999 99999999999999999999999997765 1247
Q ss_pred HHHHHHHHhccCccccccccCCceeeEEechhHHHHH
Q 006588 326 EEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLA 362 (639)
Q Consensus 326 ~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~ 362 (639)
..+++.|+++||++.. +...+|+||+++++++
T Consensus 405 e~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHh
Confidence 7889999999999873 1223699999998855
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=300.68 Aligned_cols=309 Identities=20% Similarity=0.287 Sum_probs=228.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH-HhcC-CceEEEEeCCCCchH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV-KRQF-DKILWVCVSETFDEF 99 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~ 99 (639)
.|..+..||||++++++|.++|.... ++.++|+|+|+||+||||||.+++++... ...| +.++|++++.. +..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chH
Confidence 45667789999999999999997542 36789999999999999999999997655 7889 58999999765 233
Q ss_pred HHHHH---HHHHccCC----CCCcccHHHHHHHHHHhcCC--ceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEc
Q 006588 100 RIAKA---MLEALTGS----TSNLDALQSLLISIDESIAG--KRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITT 170 (639)
Q Consensus 100 ~~~~~---il~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTs 170 (639)
.+... ++..+... .....+.+.....+...+.+ +++||||||+|+.. .+....++++|||||
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~---------~l~~l~~~~~ilvTs 264 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW---------VLKAFDSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH---------HHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH---------HHHHhcCCCeEEEEC
Confidence 33333 34444421 11234566677777776655 78999999998632 223346789999999
Q ss_pred cchHHHhhhcccceEEC---CCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHH
Q 006588 171 RNESIASMMRSTDVISI---KELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEE 247 (639)
Q Consensus 171 r~~~~~~~~~~~~~~~l---~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 247 (639)
|++.+..... ...+++ ++|+.+|+.+||...++.... ...+.+.+|++.|+|+|+||.++|.+++... .
T Consensus 265 R~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~-----~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~ 336 (591)
T 1z6t_A 265 RDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--N 336 (591)
T ss_dssp SCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGG-----GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--T
T ss_pred CCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcc-----cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--h
Confidence 9987665432 233444 589999999999998863211 1123478999999999999999999998663 2
Q ss_pred HHHHHHcC---cccc-hh----hccccchhhHHhhhhCCchhhHHHHhhhccCCCCCccChHHHHHHHHHcCCCCCcCcc
Q 006588 248 EWKRILNS---DLWK-VE----EIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPKDYNIEKDKLITLWMAQGYLSAEEDE 319 (639)
Q Consensus 248 ~~~~~l~~---~~~~-~~----~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~~w~~~g~~~~~~~~ 319 (639)
.|...+.. .... .. .....+..++..||+.|+++.|.||.++|+|++++.++...+...|..+
T Consensus 337 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------- 407 (591)
T 1z6t_A 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------- 407 (591)
T ss_dssp CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------
T ss_pred hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC---------
Confidence 45544432 1111 11 1123678899999999999999999999999999999999999988432
Q ss_pred cHHHHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHHHHhc
Q 006588 320 ELETIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQFVS 366 (639)
Q Consensus 320 ~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~~~~ 366 (639)
.+.+..+++.|+++||++.... +...+|.||+++++|++...
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhh
Confidence 2346778999999999985432 33447999999999998874
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.9e-21 Score=195.39 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=186.2
Q ss_pred EecCCcccccccccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCC
Q 006588 373 LEINGSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSL 452 (639)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 452 (639)
........++..-.....++.+.+.++.+..+|..+.++++|+.|++.+|.+. .+|.. +..+++|++|++++|
T Consensus 88 L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~------~lp~~-l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 88 LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR------ALPAS-IASLNRLRELSIRAC 160 (328)
T ss_dssp EESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC------CCCGG-GGGCTTCCEEEEEEE
T ss_pred ccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc------cCcHH-HhcCcCCCEEECCCC
Confidence 33344444443333457899999999999999999999999999999998853 45555 788999999999998
Q ss_pred CCCCcccccccc---------cCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCC
Q 006588 453 YLPSEIPRNIKK---------LIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDT 523 (639)
Q Consensus 453 ~~~~~~p~~~~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n 523 (639)
.+.+.+|..+.. +++|++|++++|.++.+|..++.+++|+.|++++|. ...+|..+..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCC
Confidence 888888877654 999999999999999999999999999999999999 4468888999999999999999
Q ss_pred CccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEE
Q 006588 524 DSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTL 603 (639)
Q Consensus 524 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l 603 (639)
.+.+.+|..++.+++|++|+ ..++.+.+.+|..+..+++|+.|++++|...+.+|. .+.++++|+.+++
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~----L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-------~l~~L~~L~~l~l 308 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLI----LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-------LIAQLPANCIILV 308 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEE----CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-------GGGGSCTTCEEEC
T ss_pred cchhhhHHHhcCCCCCCEEE----CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-------HHhhccCceEEeC
Confidence 99999999999999999998 556667788999999999999999999998888776 4888999999999
Q ss_pred EeccC
Q 006588 604 KFDEK 608 (639)
Q Consensus 604 ~~~~~ 608 (639)
..+..
T Consensus 309 ~~~~~ 313 (328)
T 4fcg_A 309 PPHLQ 313 (328)
T ss_dssp CGGGS
T ss_pred CHHHH
Confidence 86653
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.2e-21 Score=199.30 Aligned_cols=219 Identities=20% Similarity=0.198 Sum_probs=185.6
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
...++.+.+.++.+..+|..+.++++|+.|++.+|.+. .+|.. +..+++|++|++++|.+. .+|..++++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~------~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM------ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC------CCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc------chhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcC
Confidence 36789999999999999999999999999999998853 45554 788999999999999965 88999999999
Q ss_pred CcEEeccCCCCc-ccchhhhc---------CCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCc
Q 006588 468 LRYLNLSGQKIE-KLPEALCE---------LYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLK 537 (639)
Q Consensus 468 L~~L~l~~~~l~-~lp~~i~~---------l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 537 (639)
|++|++++|.+. .+|..+.. +++|++|++++|.+ ..+|..++.+++|++|++++|.+. .+|..++.++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~ 229 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCC-cCchhhccCC
Confidence 999999997644 88877654 99999999999984 489999999999999999999765 5787899999
Q ss_pred CCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCC
Q 006588 538 SLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRK 617 (639)
Q Consensus 538 ~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 617 (639)
+|++|+ ..++.+.+.+|..+..+++|+.|++++|...+.+|. .+.++++|+.|+|+.|...
T Consensus 230 ~L~~L~----Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-------~~~~l~~L~~L~L~~n~~~-------- 290 (328)
T 4fcg_A 230 KLEELD----LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-------DIHRLTQLEKLDLRGCVNL-------- 290 (328)
T ss_dssp TCCEEE----CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-------TGGGCTTCCEEECTTCTTC--------
T ss_pred CCCEEE----CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-------hhhcCCCCCEEeCCCCCch--------
Confidence 999998 556667888999999999999999999988777665 4788999999999998744
Q ss_pred cccHHHHhhcCCCCCCCcceeC
Q 006588 618 NEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 618 ~~~~~~~~~~l~~~~~L~~L~l 639 (639)
..+++.+..+++|+.+.+
T Consensus 291 ----~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 291 ----SRLPSLIAQLPANCIILV 308 (328)
T ss_dssp ----CCCCGGGGGSCTTCEEEC
T ss_pred ----hhccHHHhhccCceEEeC
Confidence 244566666777776643
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=9.8e-22 Score=198.60 Aligned_cols=202 Identities=18% Similarity=0.241 Sum_probs=119.5
Q ss_pred CCceEEEEEEe-ccc-CcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 388 DEKVRHLMLII-GKE-STFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 388 ~~~~~~l~l~~-~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
...++.+.+.+ +.+ ..+|..+.++++|+.|++.+|.+ .+.+|.. +..+++|++|++++|.+.+.+|..+..+
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-----~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-----SGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-----EEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-----CCcCCHH-HhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 45566666663 444 24555566666666666655553 3333333 5556666666666666555566666666
Q ss_pred CCCcEEeccCCCCc-ccchhhhcCC-CccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 466 IHLRYLNLSGQKIE-KLPEALCELY-NLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 466 ~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|++|++++|.++ .+|..++.++ +|+.|++++|.+.+.+|..+..++ |+.|++++|.+.+..|..+..+++|+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 66666666666666 5666666665 666666666665555666666555 66666666665555566666666666665
Q ss_pred ceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 544 EVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
...+.+.+.+|. +..+++|+.|++++|.+.+.+|. .+..+++|+.|+|+.|.+
T Consensus 228 ----L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 228 ----LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-------GLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ----CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-------GGGGCTTCCEEECCSSEE
T ss_pred ----CCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-------HHhcCcCCCEEECcCCcc
Confidence 334444444444 55666666666666665444443 355667777777776654
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=8.2e-21 Score=191.82 Aligned_cols=220 Identities=20% Similarity=0.224 Sum_probs=183.2
Q ss_pred CceEEEEEEecccC---cccccccCCCCccEEEeec-cccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccc
Q 006588 389 EKVRHLMLIIGKES---TFPISTCRTKRIRSLLIEC-RRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKK 464 (639)
Q Consensus 389 ~~~~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 464 (639)
.+++.+.+.++.+. .+|..+.++++|+.|++.+ |.+ .+.+|.. +..+++|++|++++|.+.+.+|..+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-----~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-----VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-----ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-----cccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 57999999999886 5889999999999999984 654 5556655 788999999999999977789999999
Q ss_pred cCCCcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcc-cCceeecCCCCccccccccCCCCcCCccc
Q 006588 465 LIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLI-NMKYLLNRDTDSVRYMPVGIARLKSLRTL 542 (639)
Q Consensus 465 l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 542 (639)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..+. |++|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 999999999999999 7889999999999999999997778999999998 999999999988888998888876 8888
Q ss_pred cceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHH
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQ 622 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 622 (639)
+ ...+.+.+..|..+..+++|+.|++++|.+.+.++. +..+++|+.|+|+.|.+..
T Consensus 203 ~----Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~l~~L~~L~Ls~N~l~~------------ 258 (313)
T 1ogq_A 203 D----LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--------VGLSKNLNGLDLRNNRIYG------------ 258 (313)
T ss_dssp E----CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--------CCCCTTCCEEECCSSCCEE------------
T ss_pred E----CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--------ccccCCCCEEECcCCcccC------------
Confidence 7 555667777888999999999999999987544333 5667899999999887542
Q ss_pred HHhhcCCCCCCCcceeC
Q 006588 623 LLLEALRPPPYLKELAI 639 (639)
Q Consensus 623 ~~~~~l~~~~~L~~L~l 639 (639)
.....+..+++|+.|+|
T Consensus 259 ~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CCCGGGGGCTTCCEEEC
T ss_pred cCChHHhcCcCCCEEEC
Confidence 22344455666766654
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=1.5e-20 Score=213.45 Aligned_cols=222 Identities=21% Similarity=0.263 Sum_probs=131.6
Q ss_pred CceEEEEEEecccC-cccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKES-TFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
..++.+.+.++.+. .+|..+.++++|+.|.+.+|.+ .+.+|.. +..+++|+.|++++|.+.+.+|..+.++++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l-----~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML-----EGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC-----CSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc-----cCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 44555555555442 3455555555555555544443 3334433 556666666666666666666666666666
Q ss_pred CcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCC-----------
Q 006588 468 LRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIAR----------- 535 (639)
Q Consensus 468 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~----------- 535 (639)
|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 666777666666 56666666667777777666666666666666666666666666665555543322
Q ss_pred -----------------------------------------------------------CcCCccccceEecCCCccCCC
Q 006588 536 -----------------------------------------------------------LKSLRTLEEVRVSGRGCLDGR 556 (639)
Q Consensus 536 -----------------------------------------------------------l~~L~~L~~~~~~~~~~~~~~ 556 (639)
+++|+.|+ .+.|.+.+.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld----Ls~N~l~g~ 647 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD----MSYNMLSGY 647 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE----CCSSCCBSC
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE----CcCCccccc
Confidence 23333333 334456666
Q ss_pred ccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCcc
Q 006588 557 KACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKE 636 (639)
Q Consensus 557 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 636 (639)
+|..++.+++|+.|++++|.+.+.+|. .+.++++|+.|+|+.|.++ ...+..+..+++|+.
T Consensus 648 ip~~l~~l~~L~~L~Ls~N~l~g~ip~-------~l~~L~~L~~LdLs~N~l~------------g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 648 IPKEIGSMPYLFILNLGHNDISGSIPD-------EVGDLRGLNILDLSSNKLD------------GRIPQAMSALTMLTE 708 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCE------------ECCCGGGGGCCCCSE
T ss_pred CCHHHhccccCCEEeCcCCccCCCCCh-------HHhCCCCCCEEECCCCccc------------CcCChHHhCCCCCCE
Confidence 676677777777777777766666554 3566667777777766643 123344455556665
Q ss_pred eeC
Q 006588 637 LAI 639 (639)
Q Consensus 637 L~l 639 (639)
|+|
T Consensus 709 L~l 711 (768)
T 3rgz_A 709 IDL 711 (768)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=4e-20 Score=210.01 Aligned_cols=223 Identities=20% Similarity=0.264 Sum_probs=187.5
Q ss_pred CCceEEEEEEecccC-cccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccC
Q 006588 388 DEKVRHLMLIIGKES-TFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLI 466 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 466 (639)
...++.+.+.++.+. .+|..+.++++|+.|++.+|.+ .+.+|.. +..+++|+.|++++|.+.+.+|..+..++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-----~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-----SGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE-----ESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc-----cCcccHH-HhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 467899999999885 6888899999999998888775 4455555 78899999999999998889999999999
Q ss_pred CCcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccce
Q 006588 467 HLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEV 545 (639)
Q Consensus 467 ~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~ 545 (639)
+|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|.+++.+++|++|++++|.+.+.+|..++.+++|+.|++.
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 9999999999999 788899999999999999999888999999999999999999999989999999999999998843
Q ss_pred EecCCCccCC----------------------------------------------------------------------
Q 006588 546 RVSGRGCLDG---------------------------------------------------------------------- 555 (639)
Q Consensus 546 ~~~~~~~~~~---------------------------------------------------------------------- 555 (639)
.|.+.+
T Consensus 547 ----~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 547 ----TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp ----SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred ----CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 333333
Q ss_pred CccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCc
Q 006588 556 RKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLK 635 (639)
Q Consensus 556 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 635 (639)
.+|..+..+++|+.|++++|.+.+.+|. .+.++++|+.|+|+.|.++ ...+..+..+++|+
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~Ls~N~l~------------g~ip~~l~~L~~L~ 683 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPK-------EIGSMPYLFILNLGHNDIS------------GSIPDEVGDLRGLN 683 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCG-------GGGGCTTCCEEECCSSCCC------------SCCCGGGGGCTTCC
T ss_pred cCchhhhccccccEEECcCCcccccCCH-------HHhccccCCEEeCcCCccC------------CCCChHHhCCCCCC
Confidence 3344556678899999999998877776 4788999999999999865 23455666778888
Q ss_pred ceeC
Q 006588 636 ELAI 639 (639)
Q Consensus 636 ~L~l 639 (639)
.|+|
T Consensus 684 ~LdL 687 (768)
T 3rgz_A 684 ILDL 687 (768)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=2.2e-19 Score=181.03 Aligned_cols=227 Identities=17% Similarity=0.137 Sum_probs=182.2
Q ss_pred ccCCCceEEEEEEecccCccccc-ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPIS-TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..+|.. +.++++|+.|++.+|.+.. .+..+.. +..+++|++|++++|. ...+|..+.
T Consensus 24 ~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~-~~~~~~L~~L~Ls~n~-i~~l~~~~~ 98 (306)
T 2z66_A 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQS-DFGTTSLKYLDLSFNG-VITMSSNFL 98 (306)
T ss_dssp SCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEEEHH-HHSCSCCCEEECCSCS-EEEEEEEEE
T ss_pred CCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCcccc-cccccccCEEECCCCc-cccChhhcC
Confidence 34557899999999999888865 6899999999998887531 1222344 5679999999999999 456787899
Q ss_pred ccCCCcEEeccCCCCcccch--hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccc-cccccCCCCcCCc
Q 006588 464 KLIHLRYLNLSGQKIEKLPE--ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVR-YMPVGIARLKSLR 540 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~ 540 (639)
.+++|++|++++|.++.++. .+..+++|++|++++|.+....|..+..+++|++|++++|.+.+ ..|..+..+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 99999999999999998764 78899999999999999777778888999999999999998766 5788899999999
Q ss_pred cccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCccc
Q 006588 541 TLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNED 620 (639)
Q Consensus 541 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 620 (639)
+|+ ...+.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|+|++|.+..
T Consensus 179 ~L~----Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~---------- 237 (306)
T 2z66_A 179 FLD----LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-------PYKCLNSLQVLDYSLNHIMT---------- 237 (306)
T ss_dssp EEE----CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-------GGTTCTTCCEEECTTSCCCB----------
T ss_pred EEE----CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-------hccCcccCCEeECCCCCCcc----------
Confidence 998 556667777788899999999999999986543222 36778999999999987552
Q ss_pred HHHHhhcCCCC-CCCcceeC
Q 006588 621 DQLLLEALRPP-PYLKELAI 639 (639)
Q Consensus 621 ~~~~~~~l~~~-~~L~~L~l 639 (639)
.....+..+ ++|+.|+|
T Consensus 238 --~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 238 --SKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp --CSSSSCCCCCTTCCEEEC
T ss_pred --cCHHHHHhhhccCCEEEc
Confidence 123344444 47777764
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=8.5e-19 Score=186.09 Aligned_cols=224 Identities=19% Similarity=0.201 Sum_probs=176.8
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..++ ..+.++++|+.|++.+|.+. .+++..|.++++|++|++++|.+....+..|.
T Consensus 60 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 60 DGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC------EECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred CCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC------ccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 455688999999999997765 77899999999988888742 44445588999999999999996655566789
Q ss_pred ccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccch-hhhhcccCceeecCCCCccccccccCCCCcCCcc
Q 006588 464 KLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPE-GIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRT 541 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 541 (639)
.+++|++|++++|.++.+|. .+..+++|+.|++++|+....+|. .+.++++|++|++++|.+ ..+|. +..+++|++
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~ 211 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDE 211 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSCCC-CTTCSSCCE
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccccc-cCCCcccCE
Confidence 99999999999999998776 678999999999999776777765 578899999999999964 46664 777888888
Q ss_pred ccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccH
Q 006588 542 LEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDD 621 (639)
Q Consensus 542 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 621 (639)
|+ ..+|.+.+..|..|..+++|+.|++++|.+....+ ..+.++++|+.|+|+.|.++..
T Consensus 212 L~----Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~---------- 270 (440)
T 3zyj_A 212 LD----LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-------NAFDNLQSLVEINLAHNNLTLL---------- 270 (440)
T ss_dssp EE----CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-------TSSTTCTTCCEEECTTSCCCCC----------
T ss_pred EE----CCCCccCccChhhhccCccCCEEECCCCceeEECh-------hhhcCCCCCCEEECCCCCCCcc----------
Confidence 87 55566777778889999999999999887643333 3477888999999998875521
Q ss_pred HHHhhcCCCCCCCcceeC
Q 006588 622 QLLLEALRPPPYLKELAI 639 (639)
Q Consensus 622 ~~~~~~l~~~~~L~~L~l 639 (639)
..+.+..+++|+.|+|
T Consensus 271 --~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 271 --PHDLFTPLHHLERIHL 286 (440)
T ss_dssp --CTTTTSSCTTCCEEEC
T ss_pred --ChhHhccccCCCEEEc
Confidence 1233455677777764
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.8e-19 Score=187.54 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=177.1
Q ss_pred ccCCCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.|.+.++.+..+ +..+.++++|+.|++.+|.+. .+++..+.++++|++|++++|.+....+..+.
T Consensus 71 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 71 QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC------CcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 45567899999999999776 577899999999988888742 44444588899999999999996655566788
Q ss_pred ccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccch-hhhhcccCceeecCCCCccccccccCCCCcCCcc
Q 006588 464 KLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPE-GIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRT 541 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 541 (639)
++++|++|++++|.++.+|. .+..+++|+.|++++|+..+.+|. .+.++++|++|++++|.+. .+| .+..+++|++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEE 222 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccE
Confidence 89999999999999998876 678999999999999777777775 4788999999999999754 455 4778888888
Q ss_pred ccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccH
Q 006588 542 LEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDD 621 (639)
Q Consensus 542 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 621 (639)
|+ ..+|.+.+..|..|..+++|+.|++++|.+....+. .+..+++|+.|+|+.|.+...
T Consensus 223 L~----Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~---------- 281 (452)
T 3zyi_A 223 LE----MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-------AFDGLASLVELNLAHNNLSSL---------- 281 (452)
T ss_dssp EE----CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-------TTTTCTTCCEEECCSSCCSCC----------
T ss_pred EE----CcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-------HhcCCCCCCEEECCCCcCCcc----------
Confidence 87 556667777788899999999999998886443332 477888999999998875521
Q ss_pred HHHhhcCCCCCCCcceeC
Q 006588 622 QLLLEALRPPPYLKELAI 639 (639)
Q Consensus 622 ~~~~~~l~~~~~L~~L~l 639 (639)
..+.+..+++|+.|+|
T Consensus 282 --~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 282 --PHDLFTPLRYLVELHL 297 (452)
T ss_dssp --CTTSSTTCTTCCEEEC
T ss_pred --ChHHhccccCCCEEEc
Confidence 1233455677777764
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.3e-18 Score=173.46 Aligned_cols=208 Identities=18% Similarity=0.113 Sum_probs=169.8
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCC-CCCcccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLY-LPSEIPRNI 462 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~ 462 (639)
......++.+.+.++.+..++ ..+.++++|+.|++.+|.+. .+++..+..+++|++|++++|. +....|..+
T Consensus 28 ~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA------RIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc------eeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 345689999999999998877 56899999999998888742 3433447889999999999997 555557889
Q ss_pred cccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcc
Q 006588 463 KKLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRT 541 (639)
Q Consensus 463 ~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 541 (639)
..+++|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 9999999999999999976 557889999999999999955444455889999999999999765544456888999999
Q ss_pred ccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 542 LEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 542 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
|+ ..++.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+|+.|.+.
T Consensus 182 L~----l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 182 LL----LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-------EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EE----CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-------HHHTTCTTCCEEECCSSCEE
T ss_pred EE----CCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-------HHcccCcccCEEeccCCCcc
Confidence 98 55566777778899999999999999998654222 24678899999999988754
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=8.4e-19 Score=187.18 Aligned_cols=142 Identities=18% Similarity=0.117 Sum_probs=97.8
Q ss_pred CCCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 387 LDEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
..++++.+.+.++.+..+ |..+.++++|+.|++.+|.+ .+.+++..+..+++|++|++++|.+.+..|..++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-----~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-----GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-----TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-----cceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 447788888888877665 56778888888887776653 334545456777888888888887665567777777
Q ss_pred CCCcEEeccCCCCcc-cchh--hhcCCCccEEecCCCCCccccchh-hhhcccCceeecCCCCccccccccC
Q 006588 466 IHLRYLNLSGQKIEK-LPEA--LCELYNLEKLDICSCSCLKELPEG-IGKLINMKYLLNRDTDSVRYMPVGI 533 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~ 533 (639)
++|++|++++|.++. .|.. ++.+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..|..+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 777777777777763 3433 667777777777777755555554 5677777777777776555444433
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=8.8e-19 Score=174.61 Aligned_cols=217 Identities=18% Similarity=0.150 Sum_probs=171.7
Q ss_pred EEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEE
Q 006588 392 RHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYL 471 (639)
Q Consensus 392 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 471 (639)
..+......+..+|..+ .++|+.|.+.+|.+ ..+++..+..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRI------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcC------CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 45556666777788654 57999998888874 34555557889999999999999776668889999999999
Q ss_pred eccCCC-Cccc-chhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecC
Q 006588 472 NLSGQK-IEKL-PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSG 549 (639)
Q Consensus 472 ~l~~~~-l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~ 549 (639)
++++|. ++.+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..++.+++|++|+ ..
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~ 161 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF----LH 161 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----CC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE----CC
Confidence 999997 8877 66889999999999999997666677789999999999999987655555688899999998 44
Q ss_pred CCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCC
Q 006588 550 RGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALR 629 (639)
Q Consensus 550 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 629 (639)
++.+....+..+..+++|+.|++++|.+.+..+. .+..+++|+.|+|+.|.+.. . ..+.+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~l~~---------~---~~~~~~ 222 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-------AFRDLGRLMTLYLFANNLSA---------L---PTEALA 222 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEECCSSCCSC---------C---CHHHHT
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHh-------HccCcccccEeeCCCCcCCc---------C---CHHHcc
Confidence 5556655566789999999999999986544333 47788999999999997652 1 123345
Q ss_pred CCCCCcceeC
Q 006588 630 PPPYLKELAI 639 (639)
Q Consensus 630 ~~~~L~~L~l 639 (639)
.+++|+.|+|
T Consensus 223 ~l~~L~~L~l 232 (285)
T 1ozn_A 223 PLRALQYLRL 232 (285)
T ss_dssp TCTTCCEEEC
T ss_pred cCcccCEEec
Confidence 6778887765
No 17
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.76 E-value=2.3e-17 Score=169.44 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=180.9
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-----
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF----- 96 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~----- 96 (639)
++..+..||||++++++|.+++.. + ++++|+|++|+|||+|++++++.. .++|+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER-------PGILIDCRELYAERGH 71 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEEHHHHHHTTTC
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEEeecccccccC
Confidence 445566799999999999999862 1 689999999999999999987631 27888876443
Q ss_pred -chHHHHHHHHHHccC-----------------CCC-CcccHHHHHHHHHHhcCC-ceEEEEEeCCCCCCc------cCc
Q 006588 97 -DEFRIAKAMLEALTG-----------------STS-NLDALQSLLISIDESIAG-KRFLLVLDDVWDGDY------IKW 150 (639)
Q Consensus 97 -~~~~~~~~il~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~-~~~LlvlDd~~~~~~------~~~ 150 (639)
+...++..+...+.. ... .....++....+...... ++++|||||+++.+. ..+
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 151 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKEL 151 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhH
Confidence 566677777665542 000 113455556666554432 389999999988643 112
Q ss_pred hhhhHhhhcCCCCcEEEEEccchHH-Hhh----------hcc-cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHH
Q 006588 151 EPFYHCLKKGLHGSKILITTRNESI-ASM----------MRS-TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQI 218 (639)
Q Consensus 151 ~~l~~~l~~~~~~~~ilvTsr~~~~-~~~----------~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~ 218 (639)
..++..+....++.++|+|++.... ... .+. ...+++.+|+.+|+.+++............ .+.
T Consensus 152 ~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~----~~~ 227 (350)
T 2qen_A 152 LALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP----ENE 227 (350)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHH
T ss_pred HHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHH
Confidence 2222222222246789999886543 211 111 347999999999999999876532221111 124
Q ss_pred HHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHcCcccchhhccccchhhHHhhhhCC---chhhHHHHhhhccCCCC
Q 006588 219 GQRIARKCKGLPLAAKTMGGLMSSKKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDL---PSRVKRCFSYCAVFPKD 295 (639)
Q Consensus 219 ~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L---~~~~~~~l~~la~f~~~ 295 (639)
+..+++.|+|+|+++..++..+....+...+..... +.....+...+..+ ++..+.++..+|+ . .
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~ 295 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-Y 295 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-C
Confidence 789999999999999998875432112222221110 00111122222233 6788889999988 2 2
Q ss_pred CccChHHHHHHHHHcCCCCCcCcccHHHHHHHHHHHHHhccCccccccccCCceeeEEechhHHHHHH
Q 006588 296 YNIEKDKLITLWMAQGYLSAEEDEELETIGEEYFGILASRSFFQEFEKSYDNRIIKCKMHDMVHDLAQ 363 (639)
Q Consensus 296 ~~i~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~~H~li~~~~~ 363 (639)
++...+....... . .. . .......+++.|++.++|.... + .+...|++++++.+
T Consensus 296 --~~~~~l~~~~~~~-~-~~---~-~~~~~~~~l~~L~~~gli~~~~----~--~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 --NRWSLIRDYLAVK-G-TK---I-PEPRLYALLENLKKMNWIVEED----N--TYKIADPVVATVLR 349 (350)
T ss_dssp --CSHHHHHHHHHHT-T-CC---C-CHHHHHHHHHHHHHTTSEEEET----T--EEEESSHHHHHHHT
T ss_pred --CCHHHHHHHHHHH-h-CC---C-CHHHHHHHHHHHHhCCCEEecC----C--EEEEecHHHHHHHc
Confidence 3444444332211 0 01 1 1234567799999999997642 1 13345889998874
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=9.6e-19 Score=194.14 Aligned_cols=203 Identities=13% Similarity=0.185 Sum_probs=123.6
Q ss_pred CCCceEEEEEEeccc-CcccccccCCCCccEEEeeccccCCCCchh-hhHHHHHhhC------CceeEEecCCCCCCCcc
Q 006588 387 LDEKVRHLMLIIGKE-STFPISTCRTKRIRSLLIECRRFDHSSLNG-EILEELFREL------TSLRALDFPSLYLPSEI 458 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~l------~~L~~L~l~~n~~~~~~ 458 (639)
....++.+.+.++.+ ..+|..+.++++|+.|++.+|.. +.+ .+|.. +..+ ++|+.|++++|.+. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~----l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~-~i 320 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG----ISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK-TF 320 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT----SCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS-SC
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC----CccccchHH-HHhhhccccCCCCCEEECCCCcCC-cc
Confidence 345666666666654 44666666666666665555540 244 45554 3433 66677777766644 56
Q ss_pred cc--cccccCCCcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhccc-CceeecCCCCccccccccCC
Q 006588 459 PR--NIKKLIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLIN-MKYLLNRDTDSVRYMPVGIA 534 (639)
Q Consensus 459 p~--~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~-L~~L~l~~n~~~~~~p~~~~ 534 (639)
|. .++++++|++|++++|.++ .+| .++.+++|+.|++++|. ...+|..+..+++ |++|++++|.+. .+|..+.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 65 6666666777777777666 666 66666667777776666 3366666666666 777777776544 6666555
Q ss_pred CCc--CCccccceEecCCCccCCCccCCcc-------cccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEe
Q 006588 535 RLK--SLRTLEEVRVSGRGCLDGRKACRLE-------SLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKF 605 (639)
Q Consensus 535 ~l~--~L~~L~~~~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 605 (639)
.++ +|++|+ ...+.+.+..|..+. .+++|+.|++++|.+. .++. ..+..+++|+.|+|+.
T Consensus 398 ~~~l~~L~~L~----Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~------~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 398 AKSVSVMSAID----FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK------ELFSTGSPLSSINLMG 466 (636)
T ss_dssp TTCSSCEEEEE----CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT------HHHHTTCCCSEEECCS
T ss_pred hcccCccCEEE----CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH------HHHccCCCCCEEECCC
Confidence 433 566665 444555666666665 6667777777776654 2222 1234567777777777
Q ss_pred ccCC
Q 006588 606 DEKE 609 (639)
Q Consensus 606 ~~~~ 609 (639)
|.+.
T Consensus 467 N~l~ 470 (636)
T 4eco_A 467 NMLT 470 (636)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7643
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=3.1e-19 Score=198.09 Aligned_cols=205 Identities=16% Similarity=0.155 Sum_probs=143.7
Q ss_pred CceEEEEEEeccc-CcccccccCCCCccEEEeeccccC------------------------------------------
Q 006588 389 EKVRHLMLIIGKE-STFPISTCRTKRIRSLLIECRRFD------------------------------------------ 425 (639)
Q Consensus 389 ~~~~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~------------------------------------------ 425 (639)
.++..+.+.++.+ ..+|..++++++|+.|++++|.+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4677777777766 357777888888888888777530
Q ss_pred -------------------------------CCCchhhhHHHHHhhCCceeEEecCCCCCCCc-----------------
Q 006588 426 -------------------------------HSSLNGEILEELFRELTSLRALDFPSLYLPSE----------------- 457 (639)
Q Consensus 426 -------------------------------~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------- 457 (639)
.+.+.+ +|+. +..+++|++|++++|.+.+.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 223444 5554 67788888888888886664
Q ss_pred cccccc--ccCCCcEEeccCCCCc-ccchhhhcCCCccEEecCCCC-Ccc-ccchhhhhc------ccCceeecCCCCcc
Q 006588 458 IPRNIK--KLIHLRYLNLSGQKIE-KLPEALCELYNLEKLDICSCS-CLK-ELPEGIGKL------INMKYLLNRDTDSV 526 (639)
Q Consensus 458 ~p~~~~--~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~l~~n~~~ 526 (639)
+|..++ ++++|++|++++|.+. .+|..++.+++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 777777 7888888888888765 677778888888888888887 666 677777776 77888888888655
Q ss_pred ccccc--cCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccC-cceEEE
Q 006588 527 RYMPV--GIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKY-LFSLTL 603 (639)
Q Consensus 527 ~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~-L~~L~l 603 (639)
.+|. .++.+++|++|+ ..++.+.|.+| .++.+++|+.|++++|.+. .+|. .+.++++ |+.|++
T Consensus 319 -~ip~~~~l~~l~~L~~L~----L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~-------~l~~l~~~L~~L~L 384 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLE----CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA-------NFCGFTEQVENLSF 384 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEE----CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCT-------TSEEECTTCCEEEC
T ss_pred -ccCchhhhccCCCCCEEe----CcCCcCccchh-hhCCCCCCCEEECCCCccc-cccH-------hhhhhcccCcEEEc
Confidence 7777 677777777776 44555666667 6777777777777777643 2222 3555666 677777
Q ss_pred EeccCC
Q 006588 604 KFDEKE 609 (639)
Q Consensus 604 ~~~~~~ 609 (639)
+.|.+.
T Consensus 385 s~N~l~ 390 (636)
T 4eco_A 385 AHNKLK 390 (636)
T ss_dssp CSSCCS
T ss_pred cCCcCc
Confidence 666544
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=4.8e-19 Score=182.30 Aligned_cols=231 Identities=18% Similarity=0.170 Sum_probs=171.5
Q ss_pred ccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
....+.++.+.+.++.+..+|. .+.++++|+.|++.+|.+. .+++..+..+++|++|++++|.+.+..+..++
T Consensus 48 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp TTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred ccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 3455789999999999988775 7899999999988888742 34444478899999999999996554445588
Q ss_pred ccCCCcEEeccCCCCcccch--hhhcCCCccEEecCCCCCcccc-chhhhhcccCceeecCCCCccccccccCCCCcCCc
Q 006588 464 KLIHLRYLNLSGQKIEKLPE--ALCELYNLEKLDICSCSCLKEL-PEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLR 540 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 540 (639)
++++|++|++++|.++.+|. .+..+++|++|++++|.....+ |..+.++++|++|++++|.+.+..|..++.+++|+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 99999999999999998887 6889999999999998545555 56788999999999999988777788899999999
Q ss_pred cccceEecCCCccCCCccC-CcccccCCCcCCceeeeCcCCCCChhh------------------------hcccccccc
Q 006588 541 TLEEVRVSGRGCLDGRKAC-RLESLKNLEHLQICGIRGLGDVSDVGE------------------------AKRLELDKK 595 (639)
Q Consensus 541 ~L~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~------------------------~~~~~l~~~ 595 (639)
+|++. .+.+. .+|. .+..+++|+.|++++|.+.+....... .+...+..+
T Consensus 202 ~L~l~----~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 202 HLILH----MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp EEEEE----CSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred eecCC----CCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 88743 33332 2333 345688999999998886543221000 112235667
Q ss_pred cCcceEEEEeccCCcCCCCCCCcccHHHHhhc-CCCCCCCcceeC
Q 006588 596 KYLFSLTLKFDEKEKRGGERRKNEDDQLLLEA-LRPPPYLKELAI 639 (639)
Q Consensus 596 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l 639 (639)
++|+.|+|+.|.+.. +... +..+++|++|+|
T Consensus 277 ~~L~~L~Ls~N~l~~-------------i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 277 SGLLELEFSRNQLKS-------------VPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp TTCCEEECCSSCCCC-------------CCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCCCCc-------------cCHHHHhcCCCCCEEEe
Confidence 888888888887542 2222 356677777764
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=6.5e-18 Score=167.45 Aligned_cols=213 Identities=14% Similarity=0.081 Sum_probs=168.1
Q ss_pred ccccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccc
Q 006588 383 VKKSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRN 461 (639)
Q Consensus 383 ~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 461 (639)
.+......++.+.+.++.+..++. .+.++++|+.|++.+|.+ ..+++..+..+++|++|++++|.+.+..+..
T Consensus 22 ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred cCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC------CccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 334556789999999999987775 789999999999888874 2445545788999999999999977666788
Q ss_pred ccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCccccccccCCCCcCC
Q 006588 462 IKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSL 539 (639)
Q Consensus 462 ~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 539 (639)
+.++++|++|++++|.++.++. .++.+++|++|++++|.+.. .+|..+..+++|++|++++|.+.+..+..+..+.+|
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 9999999999999999997766 68999999999999999655 378899999999999999998776666778778888
Q ss_pred ccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 540 RTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
+.|.+.-....+.+.+..+..+ ...+|+.|++++|.+.+..+. .+..+++|+.|+|+.|.+.
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDG-------IFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTT-------TTTTCCSCCEEECCSSCBC
T ss_pred cccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHh-------HhcccccccEEEccCCccc
Confidence 8554222244454554444444 445899999999986533222 4678899999999988755
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=3.1e-18 Score=193.64 Aligned_cols=181 Identities=10% Similarity=0.096 Sum_probs=100.3
Q ss_pred CCceEEEEEEecccCc------------------cccccc--CCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEE
Q 006588 388 DEKVRHLMLIIGKEST------------------FPISTC--RTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRAL 447 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L 447 (639)
...++.|.+.++.+.. +|..++ ++++|+.|.+.+|.+ .+.+|.. +..+++|+.|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l-----~~~iP~~-l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN-----MTQLPDF-LYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT-----CCSCCGG-GGGCSSCCEE
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC-----CccChHH-HhCCCCCCEE
Confidence 3556666666666654 566555 666666665555543 3444433 5556666666
Q ss_pred ecCCCC-CCC-cccccccccC-------CCcEEeccCCCCcccch--hhhcCCCccEEecCCCCCccccchhhhhcccCc
Q 006588 448 DFPSLY-LPS-EIPRNIKKLI-------HLRYLNLSGQKIEKLPE--ALCELYNLEKLDICSCSCLKELPEGIGKLINMK 516 (639)
Q Consensus 448 ~l~~n~-~~~-~~p~~~~~l~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 516 (639)
++++|. +.+ .+|..++++. +|+.|++++|.++.+|. .++.+++|+.|++++|.+. .+| .++.+++|+
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLT 598 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEES
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcce
Confidence 666665 444 4555444444 66666666666666665 5666666666666666533 555 456666666
Q ss_pred eeecCCCCccccccccCCCCcC-CccccceEecCCCccCCCccCCcccccC--CCcCCceeeeCcCCCC
Q 006588 517 YLLNRDTDSVRYMPVGIARLKS-LRTLEEVRVSGRGCLDGRKACRLESLKN--LEHLQICGIRGLGDVS 582 (639)
Q Consensus 517 ~L~l~~n~~~~~~p~~~~~l~~-L~~L~~~~~~~~~~~~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~ 582 (639)
.|++++|.+. .+|..+..+++ |++|+ ..+|.+. .+|..+..++. |+.|++++|.+.+.+|
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~----Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLG----FSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEE----CCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred EEECcCCccc-cchHHHhhccccCCEEE----CcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 6666666543 55555555555 65555 2233333 34554444432 5555555555544333
No 23
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=1.3e-16 Score=164.32 Aligned_cols=295 Identities=12% Similarity=0.089 Sum_probs=177.2
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC-----C
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET-----F 96 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~ 96 (639)
++..+..||||++++++|.+ +. . ++++|+|++|+|||+|++++++. .. ...+|+++... .
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~---~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LN---LPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HT---CCEEEEEGGGGTTCSCC
T ss_pred CCCCHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cC---CCEEEEEchhhccccCC
Confidence 33455679999999999999 74 1 58999999999999999999773 22 23688888653 3
Q ss_pred chHHHHHHHHHHccC-------------CC-----C-----------CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc
Q 006588 97 DEFRIAKAMLEALTG-------------ST-----S-----------NLDALQSLLISIDESIAGKRFLLVLDDVWDGDY 147 (639)
Q Consensus 97 ~~~~~~~~il~~l~~-------------~~-----~-----------~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~ 147 (639)
+...++..+.+.+.. .. + ......+....+.+... ++++|||||+++.+.
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVK 151 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGG
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhc
Confidence 445555555443310 00 0 11245556665655433 499999999988543
Q ss_pred ---cCchhhhHhhhcCCCCcEEEEEccchHH-Hhh---------h-cc-cceEECCCCCHHHHHHHHHHHhhCCCCchhh
Q 006588 148 ---IKWEPFYHCLKKGLHGSKILITTRNESI-ASM---------M-RS-TDVISIKELAEEECWALFKQLAFFGRSTEEC 212 (639)
Q Consensus 148 ---~~~~~l~~~l~~~~~~~~ilvTsr~~~~-~~~---------~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~ 212 (639)
.++..++..+.....+.++|+|++.... ... . +. ...+.+.+|+.+|+.+++............
T Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~- 230 (357)
T 2fna_A 152 LRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK- 230 (357)
T ss_dssp CTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-
T ss_pred cCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 2333333333332346789999987543 211 1 12 358999999999999999875421111111
Q ss_pred hHHHHHHHHHHHHcCCchhHHHHHHhhhcCCCCHHHHHHHHcCcccchhhccccchhhHHhhh---hCCchhhHHHHhhh
Q 006588 213 EKLEQIGQRIARKCKGLPLAAKTMGGLMSSKKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSY---NDLPSRVKRCFSYC 289 (639)
Q Consensus 213 ~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~---~~L~~~~~~~l~~l 289 (639)
. ...|++.|+|+|+++..++..+........|...... . ....+..-+...+ ..+++..+.++..+
T Consensus 231 -~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 231 -D----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLE---Y---AKKLILKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp -C----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHH---H---HHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred -c----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHH---H---HHHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 1 2789999999999999998765432233333321110 0 0000111122111 16788899999999
Q ss_pred ccCCCCCccChHHHHHHHH-HcCCCCCcCcccHHHHHHHHHHHHHhccCccccccccCCceeeEE-echhHHHHH
Q 006588 290 AVFPKDYNIEKDKLITLWM-AQGYLSAEEDEELETIGEEYFGILASRSFFQEFEKSYDNRIIKCK-MHDMVHDLA 362 (639)
Q Consensus 290 a~f~~~~~i~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~~~~~~~~~~~-~H~li~~~~ 362 (639)
|+ .. +...+....- ..|. .........+++.|++.++|.... + .|. .|++++++.
T Consensus 300 a~-g~----~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK-CG----KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp TT-CB----CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred Hc-CC----CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 98 21 3444432110 1120 011234567799999999997542 1 244 588998875
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.8e-17 Score=168.83 Aligned_cols=203 Identities=16% Similarity=0.196 Sum_probs=112.5
Q ss_pred cCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccc
Q 006588 386 SLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKK 464 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 464 (639)
.....++.+.+.++.+..++. .+.++++|+.|++.+|.+. .+++..+..+++|++|++++|.+ ..+|..+.
T Consensus 49 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~- 120 (330)
T 1xku_A 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS------KISPGAFAPLVKLERLYLSKNQL-KELPEKMP- 120 (330)
T ss_dssp SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC-
T ss_pred cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC------eeCHHHhcCCCCCCEEECCCCcC-CccChhhc-
Confidence 344677778888777766654 5777888888877776642 23233366777788888877773 34554432
Q ss_pred cCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCc--cccchhhhhcccCceeecCCCC-----------------
Q 006588 465 LIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCL--KELPEGIGKLINMKYLLNRDTD----------------- 524 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~n~----------------- 524 (639)
++|+.|++++|.++.++. .+..+++|+.|++++|.+. +..|..+.++++|++|++++|.
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEEC
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEEC
Confidence 466666666666665543 3556666666666666542 1344445555555555555553
Q ss_pred ----ccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcce
Q 006588 525 ----SVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFS 600 (639)
Q Consensus 525 ----~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~ 600 (639)
+.+..|..+..+++|++|+ ...+.+.+..+..+..+++|+.|++++|.+. .+|. .+..+++|+.
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~----Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-------~l~~l~~L~~ 267 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLG----LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG-------GLADHKYIQV 267 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEE----CCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT-------TTTTCSSCCE
T ss_pred CCCcCCccCHHHhcCCCCCCEEE----CCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh-------hhccCCCcCE
Confidence 3333344444445555554 2233333333444555555555555555432 2221 2445555666
Q ss_pred EEEEeccCC
Q 006588 601 LTLKFDEKE 609 (639)
Q Consensus 601 L~l~~~~~~ 609 (639)
|+|+.|.++
T Consensus 268 L~l~~N~i~ 276 (330)
T 1xku_A 268 VYLHNNNIS 276 (330)
T ss_dssp EECCSSCCC
T ss_pred EECCCCcCC
Confidence 666555543
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=2.4e-17 Score=168.08 Aligned_cols=175 Identities=19% Similarity=0.234 Sum_probs=112.9
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
....+.++.+.+.++.+..++ ..+.++++|+.|.+.+|.+ . .+++..+..+++|++|++++|.+ ..+|..+.
T Consensus 50 ~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----~-~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~ 122 (332)
T 2ft3_A 50 KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-----S-KIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP 122 (332)
T ss_dssp SCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-----C-EECGGGSTTCTTCCEEECCSSCC-CSCCSSCC
T ss_pred CCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-----C-ccCHhHhhCcCCCCEEECCCCcC-CccCcccc
Confidence 344578899999999887765 5788999999998887774 2 33333478889999999999984 46665544
Q ss_pred ccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCc--cccchhhhhcccCceeecCCCCccccccccCCCCcCCc
Q 006588 464 KLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCL--KELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLR 540 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~--~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 540 (639)
++|++|++++|.++.+|. .+..+++|+.|++++|.+. +..|..+..+ +|++|++++|.+ ..+|..+. ++|+
T Consensus 123 --~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l~~~~~--~~L~ 196 (332)
T 2ft3_A 123 --SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP--ETLN 196 (332)
T ss_dssp --TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SSCCSSSC--SSCS
T ss_pred --ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC-CccCcccc--CCCC
Confidence 688888888888887765 4778888888888888753 2445545555 555555555543 23443332 3444
Q ss_pred cccceEecCCCccCCCccCCcccccCCCcCCceeee
Q 006588 541 TLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIR 576 (639)
Q Consensus 541 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 576 (639)
+|+ ...+.+....+..+..+++|+.|++++|.
T Consensus 197 ~L~----l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 197 ELH----LDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CCB----CCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred EEE----CCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 444 22333333334444444555555554444
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2.2e-18 Score=173.65 Aligned_cols=216 Identities=17% Similarity=0.110 Sum_probs=170.5
Q ss_pred EEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCc--ccccccccCCCcE
Q 006588 393 HLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSE--IPRNIKKLIHLRY 470 (639)
Q Consensus 393 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~ 470 (639)
.+......+..+|..+. ++|+.|.+.+|.+ ..+|+.++..+++|++|++++|.+... .|..+..+++|++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKL------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCcc------CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 45666667788887554 7999998888874 356666678999999999999996532 3667778999999
Q ss_pred EeccCCCCcccchhhhcCCCccEEecCCCCCccccc-hhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecC
Q 006588 471 LNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELP-EGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSG 549 (639)
Q Consensus 471 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~ 549 (639)
|++++|.++.+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|..+..+++|++|+ ..
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~----l~ 158 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK----MA 158 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE----CT
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE----CC
Confidence 999999999999999999999999999998444333 4688999999999999988777888888999999998 44
Q ss_pred CCccCC-CccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcC
Q 006588 550 RGCLDG-RKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEAL 628 (639)
Q Consensus 550 ~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 628 (639)
.+.+.+ ..|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+|+.|.+.... ...+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~------------~~~~ 219 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-------TAFNSLSSLQVLNMSHNNFFSLD------------TFPY 219 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTSCCSBCC------------SGGG
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCH-------HHhcCCCCCCEEECCCCccCccC------------hhhc
Confidence 454544 578889999999999999998644333 24778899999999999865311 1234
Q ss_pred CCCCCCcceeC
Q 006588 629 RPPPYLKELAI 639 (639)
Q Consensus 629 ~~~~~L~~L~l 639 (639)
..+++|+.|+|
T Consensus 220 ~~l~~L~~L~L 230 (306)
T 2z66_A 220 KCLNSLQVLDY 230 (306)
T ss_dssp TTCTTCCEEEC
T ss_pred cCcccCCEeEC
Confidence 55778887765
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.9e-17 Score=163.48 Aligned_cols=197 Identities=19% Similarity=0.162 Sum_probs=94.9
Q ss_pred EEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEE
Q 006588 392 RHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYL 471 (639)
Q Consensus 392 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 471 (639)
+.+.+.++.+..+|..+. ++|+.|.+.+|.+. .+++..+..+++|++|++++|.+....+..|.++++|++|
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLS------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCS------CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCC------eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 344444444555554333 45555555555432 2232224555555555555555333333334555555555
Q ss_pred eccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCC
Q 006588 472 NLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGR 550 (639)
Q Consensus 472 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~ 550 (639)
++++|.++.+|. .+..+++|++|++++|.+....|..+..+++|++|++++|.+....+..+..+++|++|+ ..+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~----L~~ 166 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR----LYN 166 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----CCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE----ecC
Confidence 555555555443 235555555555555553333333345555555555555543332222345555555554 333
Q ss_pred CccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEecc
Q 006588 551 GCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDE 607 (639)
Q Consensus 551 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 607 (639)
+.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|+|+.|.
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCH-------HHhccccCCCEEEecCCC
Confidence 33444444445555555555555554332111 124445555556555554
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=5.8e-18 Score=181.77 Aligned_cols=233 Identities=18% Similarity=0.162 Sum_probs=149.4
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.|.+.++.+..++ ..+.++++|+.|++.+|.+ . .+++..+..+++|++|++++|.+....+..|.
T Consensus 28 ~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-----~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-----S-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-----C-EECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-----C-EeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 345577888888888887664 5788888888887777764 2 33333377788888888888885544445577
Q ss_pred ccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccc
Q 006588 464 KLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTL 542 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 542 (639)
++++|++|++++|.++.+ |..+..+++|+.|++++|.+....|..+.++++|+.|++++|.+....+..+..+++|+.|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 788888888888888754 4567788888888888887665556667778888888888886554444456677777777
Q ss_pred cceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCCh-----------------hhhcccccccccCcceEEEEe
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDV-----------------GEAKRLELDKKKYLFSLTLKF 605 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----------------~~~~~~~l~~~~~L~~L~l~~ 605 (639)
++ ..+.+.+..+..+..+++|+.|++++|...+.++.. .......+..+++|+.|+|+.
T Consensus 182 ~l----~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 182 RL----RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EE----ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred eC----CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 63 233344444556666777777777665544333220 011111245556666666666
Q ss_pred ccCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 606 DEKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
|.+.. .....+..+++|+.|+|
T Consensus 258 n~l~~------------~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 258 NPIST------------IEGSMLHELLRLQEIQL 279 (477)
T ss_dssp SCCCE------------ECTTSCTTCTTCCEEEC
T ss_pred CcCCc------------cChhhccccccCCEEEC
Confidence 65331 11233455677777654
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=1.1e-17 Score=185.32 Aligned_cols=207 Identities=20% Similarity=0.170 Sum_probs=146.4
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccc-cccccC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPR-NIKKLI 466 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~ 466 (639)
...++.+.+.++.+..+|..+..+++|+.|.+.+|.+ . .+++..+..+++|++|++++|.+.+.+|. .+.+++
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-----~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-----E-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-----S-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-----C-cCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 4678888888888888888888899999998887764 2 33333477788888888888886656654 477788
Q ss_pred CCcEEeccCCCCccc---chhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccccc-CCCCcCCccc
Q 006588 467 HLRYLNLSGQKIEKL---PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVG-IARLKSLRTL 542 (639)
Q Consensus 467 ~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L 542 (639)
+|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 888888888888754 556778888888888888766666777778888888888888766555543 6777777777
Q ss_pred cceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
+ ..++.+.+..|..+..+++|+.|++++|.+.+.... ....+..+++|+.|+|++|.+
T Consensus 431 ~----l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 431 N----LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ----KTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp E----CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC----SSCGGGGCTTCCEEECTTSCC
T ss_pred E----CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc----cchhhccCCCccEEECCCCcc
Confidence 7 445556666677777788888888877765431100 011244555566666655543
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=7.8e-18 Score=179.66 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHH-HHHhhCCceeEEecCCCCCCCccccc-ccc
Q 006588 388 DEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILE-ELFRELTSLRALDFPSLYLPSEIPRN-IKK 464 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~ 464 (639)
...++.+.+.++.+..+ |..+.++++|+.|++.+|.+ .+.++. ..+..+++|++|++++|.+.+..|.. +.+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL-----DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC-----BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC-----CccccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 35677777777766554 56677777777776666653 333222 22566777777777777765555554 666
Q ss_pred cCCCcEEeccCCCCcc
Q 006588 465 LIHLRYLNLSGQKIEK 480 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~ 480 (639)
+++|++|++++|.++.
T Consensus 153 l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCCEEECTTCCBSC
T ss_pred CCcccEEeCCCCcccc
Confidence 7777777777776663
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=5.4e-17 Score=183.58 Aligned_cols=147 Identities=17% Similarity=0.256 Sum_probs=124.6
Q ss_pred CCCceEEEEEEeccc-CcccccccCCCCccEEEeeccc-cCCCCchh-hhHHHHHhhCC-------ceeEEecCCCCCCC
Q 006588 387 LDEKVRHLMLIIGKE-STFPISTCRTKRIRSLLIECRR-FDHSSLNG-EILEELFRELT-------SLRALDFPSLYLPS 456 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~-~~~~~~~~~l~-------~L~~L~l~~n~~~~ 456 (639)
....++.|.+.++.+ ..+|..+.++++|+.|.+.+|+ + .+ .+|.. +..+. +|+.|++++|.+.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-----sg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-----SAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-----CHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-----ccccchHH-HHhhhhcccccCCccEEEeeCCcCC-
Confidence 468899999999975 6789999999999999887775 4 66 67766 45554 9999999999966
Q ss_pred cccc--cccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhccc-CceeecCCCCccccccccC
Q 006588 457 EIPR--NIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLIN-MKYLLNRDTDSVRYMPVGI 533 (639)
Q Consensus 457 ~~p~--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~-L~~L~l~~n~~~~~~p~~~ 533 (639)
.+|. .++++++|+.|++++|.++.+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 8888 8999999999999999999998 8999999999999999955 89988999998 999999999755 788777
Q ss_pred CCCcC--Ccccc
Q 006588 534 ARLKS--LRTLE 543 (639)
Q Consensus 534 ~~l~~--L~~L~ 543 (639)
..++. |+.|+
T Consensus 639 ~~~~~~~L~~L~ 650 (876)
T 4ecn_A 639 NAKSVYVMGSVD 650 (876)
T ss_dssp CTTCSSCEEEEE
T ss_pred hccccCCCCEEE
Confidence 65543 66665
No 32
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.72 E-value=1.5e-16 Score=167.39 Aligned_cols=305 Identities=14% Similarity=0.033 Sum_probs=180.6
Q ss_pred CCCCcccchhhHHHHHHHH-hccCCcCCCCeEEEEE--EcCCCChHHHHHHHhcChhhHHh---cC-CceEEEEeCCCCc
Q 006588 25 DEEEICGRVGERNALVSML-LCESSEQQKGLHIISI--VGMGGIGKTTLAQLACNHDEVKR---QF-DKILWVCVSETFD 97 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L-~~~~~~~~~~~~~v~i--~G~~GiGKTtLa~~~~~~~~~~~---~f-~~~~wv~~~~~~~ 97 (639)
.+..|+||++++++|.+.+ .....+.....+.++| +|++|+|||+||+.+++...... .+ ..++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4578999999999999998 5332100024567888 99999999999999988432210 12 3468888877788
Q ss_pred hHHHHHHHHHHccCCCCC-cccHHHHHHHHHHhcC--CceEEEEEeCCCCCCc------cCchhhhHhhhcC---C--CC
Q 006588 98 EFRIAKAMLEALTGSTSN-LDALQSLLISIDESIA--GKRFLLVLDDVWDGDY------IKWEPFYHCLKKG---L--HG 163 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~~------~~~~~l~~~l~~~---~--~~ 163 (639)
..+++..++..++..... ..+..+....+...+. +++++|||||+++... ..+..+...+... . ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999998764321 2234455555555543 6799999999987532 2222233333322 2 34
Q ss_pred cEEEEEccchHHHhhh--------c-ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcC------C
Q 006588 164 SKILITTRNESIASMM--------R-STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCK------G 228 (639)
Q Consensus 164 ~~ilvTsr~~~~~~~~--------~-~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 228 (639)
..+|+||+........ . ....+.+.+++.+++.++|...+....... .-..+.+..|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCC
Confidence 5578788755432111 1 122499999999999999976542111100 001234788999999 9
Q ss_pred chhHHHHHHhhhc------CC--CCHHHHHHHHcCcccchhhccccc-hhhHHhhhhCCchhhHHHHhhhccCC--CCCc
Q 006588 229 LPLAAKTMGGLMS------SK--KTEEEWKRILNSDLWKVEEIEKGF-LTPLWLSYNDLPSRVKRCFSYCAVFP--KDYN 297 (639)
Q Consensus 229 ~Plal~~~~~~l~------~~--~~~~~~~~~l~~~~~~~~~~~~~l-~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~ 297 (639)
+|..+..++.... +. ...+.+...+.. .. ...+...+..|+...+.++..++.+. ....
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~----------~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE----------NEAASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH----------C------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----------HhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 9976555543221 11 122333322211 01 23355567889999999999888753 2234
Q ss_pred cChHHHHHHHHHc--CCCCCcCcccHHHHHHHHHHHHHhccCcccccc
Q 006588 298 IEKDKLITLWMAQ--GYLSAEEDEELETIGEEYFGILASRSFFQEFEK 343 (639)
Q Consensus 298 i~~~~l~~~w~~~--g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~ 343 (639)
++...+...+... ... .... ........+++.|++.++|.....
T Consensus 328 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~L~~~gli~~~~~ 373 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMY-NVKP-RGYTQYHIYLKHLTSLGLVDAKPS 373 (412)
T ss_dssp BCHHHHHHHHHHHHHHHS-CCCC-CCHHHHHHHHHHHHHTTSEEEECC
T ss_pred ccHHHHHHHHHHHHHhhc-CCCC-CCHHHHHHHHHHHHhCCCEEeecc
Confidence 4554444333110 000 0111 112335567999999999976543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.72 E-value=4.8e-18 Score=177.39 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=59.1
Q ss_pred CceEEEEEEecccCccccc-ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKESTFPIS-TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
..++.+.+.++.+..+|.. +..+++|+.|.+.+|.+ ..+++..+..+++|++|++++|.+.+..|..++++++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcc------cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3445555555544444433 34455555554444432 1222222444555555555555543333444444555
Q ss_pred CcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCC
Q 006588 468 LRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTD 524 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~ 524 (639)
|++|++++|.++.+|.. +..+++|++|++++|.+....|..+..+++|++|++++|.
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 55555555555544443 2444555555555544333333334444444444444443
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=178.06 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=102.9
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
....+.++.+.+.++.+..++ ..+..+++|+.|++++|.+ . .+++..+..+++|++|++++|.+. .+|..
T Consensus 17 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-----~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-----Q-YLDISVFKFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp CSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC-----C-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred ccccccccEEECCCCcccccChhhccccccccEEecCCCcc-----C-CcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence 334488999999999887766 6789999999998888874 3 343444888999999999999954 67765
Q ss_pred ccCCCcEEeccCCCCcc--cchhhhcCCCccEEecCCCCCccccchhhhhcccC--ceeecCCCCc--cccccccC
Q 006588 464 KLIHLRYLNLSGQKIEK--LPEALCELYNLEKLDICSCSCLKELPEGIGKLINM--KYLLNRDTDS--VRYMPVGI 533 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~n~~--~~~~p~~~ 533 (639)
.+++|++|++++|.++. +|..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .+..|..+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc
Confidence 78999999999999985 57889999999999999888543 234555555 6666666655 33444433
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=4.6e-17 Score=162.13 Aligned_cols=198 Identities=16% Similarity=0.060 Sum_probs=142.7
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+..+.+..+|..+. ++++.|.+.+|.+ ..+++..+..+++|+.|++++|.+. .++.. +.+++|
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l------~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L 79 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLL------YTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVL 79 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCC------SEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcC------CccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcC
Confidence 567777777777777876664 6888887777764 2333444778888888888888844 44432 678888
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
++|++++|.++.+|..+..+++|++|++++|.+....|..+..+++|++|++++|.+....+..|..+++|+.|+ .
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~----L 155 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS----L 155 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE----C
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE----C
Confidence 888888888888888888888888888888885544445678888888888888876554444567778888887 4
Q ss_pred CCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 549 GRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
.+|.+....+..+..+++|+.|++++|.+. .+|. .+..+.+|+.|+|+.|.+
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-------~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-------GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-------TTTTTCCCSEEECCSCCB
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-------hhcccccCCeEEeCCCCc
Confidence 555566555566778888888888888754 3333 244556788888886654
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.9e-17 Score=181.09 Aligned_cols=200 Identities=13% Similarity=0.105 Sum_probs=135.3
Q ss_pred CCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 387 LDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
....++.|.+.++.+..+| ..+..+++|+.|++.+|.+. .+|+.++..+++|++|++++|.+.+..|..++++
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 170 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC
Confidence 4467888888888776665 34678888888877777642 4555556778888888888888766667778888
Q ss_pred CCCcEEeccCCCCcccchhhhcCC----------------------------------------CccEEecCCCCCcccc
Q 006588 466 IHLRYLNLSGQKIEKLPEALCELY----------------------------------------NLEKLDICSCSCLKEL 505 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~lp~~i~~l~----------------------------------------~L~~L~l~~~~~~~~l 505 (639)
++|++|++++|.++.++ ++.++ +|+.|++++|.+.+
T Consensus 171 ~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 171 TSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp TTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--
T ss_pred CcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--
Confidence 88888888888877553 12222 24444444444222
Q ss_pred chhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChh
Q 006588 506 PEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVG 585 (639)
Q Consensus 506 p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 585 (639)
+..+..+++|+.|++++|.+.+..|..++.+++|++|+ ..+|.+.+ +|..+..+++|+.|++++|.+. .+|.
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~-- 318 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY----ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-- 318 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE----CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG--
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE----CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCc--
Confidence 24467778888888888877777777777788888777 33343433 4666677788888888887754 2222
Q ss_pred hhcccccccccCcceEEEEeccCC
Q 006588 586 EAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 586 ~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.+..+++|+.|+|+.|.+.
T Consensus 319 -----~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 319 -----NQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp -----GHHHHTTCSEEECCSSCCC
T ss_pred -----ccccCCCCCEEECCCCCCC
Confidence 2456678888888877754
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=9e-18 Score=180.27 Aligned_cols=226 Identities=19% Similarity=0.143 Sum_probs=118.3
Q ss_pred CceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
..++.|.+.++.+..+ |..+.++++|+.|++.+|.+. .+++..+..+++|++|++++|.+.+..|..+.++++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC------ccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 4455555555555443 344555555555555544421 233333444555555555555544444444555555
Q ss_pred CcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 468 LRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 468 L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
|+.|++++|.++.+ |..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++..
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 55555555555433 23444555555555555542222222344445555555555443333333344444444443221
Q ss_pred e--------------------cCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 547 V--------------------SGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 547 ~--------------------~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
+ ..++.+....+..+..+++|+.|++++|.+.... ...+..+++|+.|+|+.|
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-------GSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-------TTSCTTCTTCCEEECCSS
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-------hhhccccccCCEEECCCC
Confidence 1 2223333333345778888899988888754322 234778899999999999
Q ss_pred cCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 607 EKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
.+.. .....+..+++|+.|+|
T Consensus 283 ~l~~------------~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 283 QLAV------------VEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCSE------------ECTTTBTTCTTCCEEEC
T ss_pred ccce------------ECHHHhcCcccCCEEEC
Confidence 7552 12345567788888875
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=3e-17 Score=181.82 Aligned_cols=219 Identities=20% Similarity=0.118 Sum_probs=130.9
Q ss_pred cCCcccccccccCCCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCC
Q 006588 375 INGSEELNVKKSLDEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLY 453 (639)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 453 (639)
.+.....+..-.....++.+.+.++.+..+ |..+..+++|+.|.+.+|.+ .+.+++..+..+++|+.|++++|.
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK-----RLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS-----CCBCCSSTTTTCTTCCEEECCSSC
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc-----ccccchhhhhccCcCCEEECCCCc
Confidence 333333333333446777888877777654 45677778888887766653 334444445667777777777777
Q ss_pred CCCcc--cccccccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchh-hhhcccCceeecCCCCccccc
Q 006588 454 LPSEI--PRNIKKLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEG-IGKLINMKYLLNRDTDSVRYM 529 (639)
Q Consensus 454 ~~~~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~ 529 (639)
+.+.. |..+.++++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.+..
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 54443 55566677777777777776643 445666777777777777654444433 566677777777777665555
Q ss_pred cccCCCCcCCccccceEecCCCccCC---CccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 530 PVGIARLKSLRTLEEVRVSGRGCLDG---RKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 530 p~~~~~l~~L~~L~~~~~~~~~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
|..++.+++|++|+ ..++.+.+ ..+..+..+++|+.|++++|.+.+..+. .+..+++|+.|+|+.|
T Consensus 442 ~~~~~~l~~L~~L~----L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 442 EQLFDGLPALQHLN----LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-------AFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTTTTTCTTCCEEE----CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-------TTTTCTTCCEEECCSS
T ss_pred HHHHhCCCCCCEEE----CCCCCCCccccccchhhccCCCccEEECCCCccCccChh-------hhccccCCCEEECCCC
Confidence 66666666666666 33333332 1223456666666666666654332222 3555666666666666
Q ss_pred cCC
Q 006588 607 EKE 609 (639)
Q Consensus 607 ~~~ 609 (639)
.+.
T Consensus 511 ~l~ 513 (606)
T 3t6q_A 511 RLT 513 (606)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=3.6e-17 Score=181.13 Aligned_cols=181 Identities=15% Similarity=0.129 Sum_probs=140.8
Q ss_pred ccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..++. .+.++++|+.|++.+|.+ ..+++..|..+++|++|++++|.+.+..|..|+
T Consensus 28 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp TTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc------cccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4556889999999999977664 889999999998888874 244454588999999999999997777789999
Q ss_pred ccCCCcEEeccCCCCcccc-hhhhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCccccccccCCCCcCCc-
Q 006588 464 KLIHLRYLNLSGQKIEKLP-EALCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLR- 540 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~- 540 (639)
++++|++|++++|.++.+| ..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..++.+.+|+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 9999999999999999776 678999999999999999654 6799999999999999999987777777777766665
Q ss_pred ---cccceEecCCCccCCCccCCcccccCCCcCCceeee
Q 006588 541 ---TLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIR 576 (639)
Q Consensus 541 ---~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 576 (639)
+|+ ...+.+....+..+... +|+.|++++|.
T Consensus 182 ~l~~L~----l~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 215 (606)
T 3vq2_A 182 VNLSLD----MSLNPIDFIQDQAFQGI-KLHELTLRGNF 215 (606)
T ss_dssp CCCEEE----CTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred ccceee----ccCCCcceeCcccccCc-eeeeeeccCCc
Confidence 343 33333333333333332 56666666554
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=185.81 Aligned_cols=182 Identities=21% Similarity=0.170 Sum_probs=144.6
Q ss_pred CCCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 387 LDEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
.+..++.|.+.++.+..+ |..+.++++|+.|++++|.. .+.+++..+..+++|++|++++|.+.+..|..|+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 668999999999999765 67899999999998888743 556655558999999999999999777779999999
Q ss_pred CCCcEEeccCCCCcc-cchh--hhcCCCccEEecCCCCCccccc-hhhhhcccCceeecCCCCccccccccCCCC--cCC
Q 006588 466 IHLRYLNLSGQKIEK-LPEA--LCELYNLEKLDICSCSCLKELP-EGIGKLINMKYLLNRDTDSVRYMPVGIARL--KSL 539 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l--~~L 539 (639)
++|++|+|++|.++. +|.. ++.+++|++|++++|.+.+..| ..++++++|++|++++|.+.+..|..+..+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 999999999999984 5654 8899999999999999665544 568999999999999998877777777666 677
Q ss_pred ccccceEecCCCccCCCccCCcccccC------CCcCCceeeeC
Q 006588 540 RTLEEVRVSGRGCLDGRKACRLESLKN------LEHLQICGIRG 577 (639)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~~~~~l~~------L~~L~l~~n~~ 577 (639)
+.|+ ...+.+.+..|..+..+++ |+.|++++|.+
T Consensus 177 ~~L~----L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 177 SFFS----LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CCCE----ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred ceEE----CCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 7776 3344455555555555444 66666666643
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=172.22 Aligned_cols=197 Identities=20% Similarity=0.184 Sum_probs=157.8
Q ss_pred EEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEec
Q 006588 394 LMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNL 473 (639)
Q Consensus 394 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 473 (639)
....++.+..+|..+. ++|+.|++.+|.+ ..+++..+..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRI------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCcC------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4455667788887665 5999998888874 3455545889999999999999977666788999999999999
Q ss_pred cCCCCcccchh-hhcCCCccEEecCCCCCccccch--hhhhcccCceeecCCCCccccc-cccCCCCcCCccccceEecC
Q 006588 474 SGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPE--GIGKLINMKYLLNRDTDSVRYM-PVGIARLKSLRTLEEVRVSG 549 (639)
Q Consensus 474 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~~~~~~~ 549 (639)
++|.++.+|.. ++.+++|++|++++|. ...+|. .+..+++|++|++++|.....+ |..++.+++|++|++ .
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l----~ 182 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI----D 182 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE----E
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC----C
Confidence 99999999876 8899999999999998 556776 6889999999999999544444 567888999999984 3
Q ss_pred CCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCc
Q 006588 550 RGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEK 610 (639)
Q Consensus 550 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 610 (639)
.+.+.+..|..+..+++|+.|++++|.+. .++ ...+..+++|+.|+++.|.+..
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~------~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL------EIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCST-THH------HHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccc-cch------hhhhhhcccccEEECCCCcccc
Confidence 44456667889999999999999999752 222 2234567899999999998764
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.70 E-value=3.1e-17 Score=181.66 Aligned_cols=206 Identities=19% Similarity=0.121 Sum_probs=128.5
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeecccc-----------------CCCCchhh--hHHHHHhhCCceeEEec
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRF-----------------DHSSLNGE--ILEELFRELTSLRALDF 449 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l-----------------~~~~~~~~--~~~~~~~~l~~L~~L~l 449 (639)
..++.+.+.++.+..+| .+ .+++|+.|.+.+|.. +.+.+.+. ++.. +..+++|+.|++
T Consensus 307 ~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L~L 383 (606)
T 3vq2_A 307 FKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS-DLGTNSLRHLDL 383 (606)
T ss_dssp CCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHH-HHCCSCCCEEEC
T ss_pred ccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhh-hccCCcccEeEC
Confidence 45666666666665555 33 555555555555421 11111211 1222 566677777777
Q ss_pred CCCCCCCcccccccccCCCcEEeccCCCCcccch--hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccc
Q 006588 450 PSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE--ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVR 527 (639)
Q Consensus 450 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~ 527 (639)
++|. ...+|..+..+++|+.|++++|.+...++ .+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+.+
T Consensus 384 ~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 384 SFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD 462 (606)
T ss_dssp CSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence 7776 33455666677777777777777764433 56677777777777777666666667777777777777776655
Q ss_pred -cccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 528 -YMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 528 -~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
.+|..++.+++|++|+ ..++.+.+..|..+..+++|+.|++++|.+.+..| ..+.++++|+.|+|++|
T Consensus 463 ~~~~~~~~~l~~L~~L~----Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLD----LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-------SHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GEECSCCTTCTTCCEEE----CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-------GGTTTCTTCCEEECTTS
T ss_pred cchHHhhccCCCCCEEE----CCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-------HHccCCCcCCEEECCCC
Confidence 3566677777777776 44555566666677777777777777776543322 24666777777777777
Q ss_pred cCC
Q 006588 607 EKE 609 (639)
Q Consensus 607 ~~~ 609 (639)
.++
T Consensus 532 ~l~ 534 (606)
T 3vq2_A 532 RIE 534 (606)
T ss_dssp CCC
T ss_pred cCc
Confidence 643
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=4.7e-17 Score=169.84 Aligned_cols=236 Identities=15% Similarity=0.123 Sum_probs=150.0
Q ss_pred cccceeEEecCCcccccc-cccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCc
Q 006588 366 SENECLSLEINGSEELNV-KKSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTS 443 (639)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 443 (639)
..-+.+..........+. .-.....++.+.+.++.+..++ ..+.++++|+.|++.+|.+. .+|+.++..+++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~l~~~~~~~l~~ 142 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------SLPRGIFHNTPK 142 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTT
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC------cCCHHHhcCCCC
Confidence 333444444444333322 1234567888888888876664 45778888888887777642 455555677888
Q ss_pred eeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCC----------------------------------
Q 006588 444 LRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELY---------------------------------- 489 (639)
Q Consensus 444 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~---------------------------------- 489 (639)
|++|++++|.+.+..|..+.++++|+.|++++|.++.++ ++.++
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~ 220 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeec
Confidence 888888888866666667888888888888888877543 12222
Q ss_pred ------CccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCccc
Q 006588 490 ------NLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLES 563 (639)
Q Consensus 490 ------~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~ 563 (639)
+|+.|++++|.+. .. ..+..+++|++|++++|.+.+..|..+..+++|++|++ .++.+.+ +|..+..
T Consensus 221 ~~~~~~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L----~~n~l~~-~~~~~~~ 293 (390)
T 3o6n_A 221 RGPVNVELTILKLQHNNLT-DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI----SNNRLVA-LNLYGQP 293 (390)
T ss_dssp ECCCCSSCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC----CSSCCCE-EECSSSC
T ss_pred cccccccccEEECCCCCCc-cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC----CCCcCcc-cCcccCC
Confidence 3444444444422 22 34677778888888888766666777777778887773 3333332 4555667
Q ss_pred ccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 564 LKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 564 l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
+++|+.|++++|.+. .++. .+..+++|+.|+|+.|.+... .+..+++|+.|+|
T Consensus 294 l~~L~~L~L~~n~l~-~~~~-------~~~~l~~L~~L~L~~N~i~~~---------------~~~~~~~L~~L~l 346 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVER-------NQPQFDRLENLYLDHNSIVTL---------------KLSTHHTLKNLTL 346 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGG-------GHHHHTTCSEEECCSSCCCCC---------------CCCTTCCCSEEEC
T ss_pred CCCCCEEECCCCcce-ecCc-------cccccCcCCEEECCCCcccee---------------CchhhccCCEEEc
Confidence 788888888887653 2222 245667888888887765420 2455677777654
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.6e-17 Score=183.28 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=64.8
Q ss_pred CceEEEEEEecccCccccc-ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKESTFPIS-TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
..++.+.+.++.+..+|.. +..+++|+.|++.+|.+ . .+++..+..+++|++|++++|.+.+..|..|+++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-----~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-----E-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-----C-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-----C-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 3445555555555444433 34455555555544442 1 222222455555555555555544444444555555
Q ss_pred CcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCc
Q 006588 468 LRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDS 525 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~ 525 (639)
|++|+|++|.++.+|.. ++.+++|++|++++|.+.+..|..+.++++|++|++++|.+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 55555555555555443 24555555555555554444444455555555555555543
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=174.01 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=167.7
Q ss_pred CCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 387 LDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
...+++.|.+.++.+..++ ..+.++++|+.|++.+|.+. .+++..+..+++|+.|++++|.+....+..|.++
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC------eeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 4478999999999987766 67899999999999888753 4555557889999999999999665555678899
Q ss_pred CCCcEEeccC-CCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 466 IHLRYLNLSG-QKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 466 ~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|+.|++++ +.++.++. .+..+++|++|++++|. +..+|. +..+++|+.|++++|.+.+..|..|..+++|++|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 9999999998 45666665 68899999999999998 667775 88999999999999988777788899999999998
Q ss_pred ceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 544 EVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
..++.+....+..|..+++|+.|++++|.+....+. .+..+++|+.|+|+.|.+
T Consensus 238 ----L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 238 ----MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-------LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ----CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-------TTSSCTTCCEEECCSSCE
T ss_pred ----CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh-------HhccccCCCEEEcCCCCc
Confidence 566667777788899999999999999986543332 467789999999987753
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=3e-16 Score=159.72 Aligned_cols=225 Identities=15% Similarity=0.076 Sum_probs=162.5
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCC--cccccccccC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPS--EIPRNIKKLI 466 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l~ 466 (639)
..++.+.+.++.+..+|..+. ++|+.|.+.+|.+ ..+++..+..+++|+.|++++|.+.. ..+..+.+++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCC------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred CCCCEEECCCCcCCccChhhc--ccccEEECCCCcc------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 456666666666655554443 5666665555553 34566668899999999999999643 5677889999
Q ss_pred CCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 467 HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
+|++|++++|.++.+|..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 172 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--- 246 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH--- 246 (330)
T ss_dssp TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE---
T ss_pred CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE---
Confidence 99999999999999987664 8999999999997766678899999999999999987766666788899999998
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhh
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLE 626 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 626 (639)
..++.+. .+|..+..+++|+.|++++|.+....+.... ..........|+.|+++.|.+.. ..-...
T Consensus 247 -L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~-~~~~~~~~~~l~~l~l~~N~~~~----------~~i~~~ 313 (330)
T 1xku_A 247 -LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC-PPGYNTKKASYSGVSLFSNPVQY----------WEIQPS 313 (330)
T ss_dssp -CCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS-CSSCCTTSCCCSEEECCSSSSCG----------GGSCGG
T ss_pred -CCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC-CcccccccccccceEeecCcccc----------cccCcc
Confidence 4444444 6788899999999999999986543332111 01112235789999998876431 011124
Q ss_pred cCCCCCCCcceeC
Q 006588 627 ALRPPPYLKELAI 639 (639)
Q Consensus 627 ~l~~~~~L~~L~l 639 (639)
....+.+|+.++|
T Consensus 314 ~f~~~~~l~~l~L 326 (330)
T 1xku_A 314 TFRCVYVRAAVQL 326 (330)
T ss_dssp GGTTCCCGGGEEC
T ss_pred ccccccceeEEEe
Confidence 4555677777654
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=3.3e-17 Score=174.44 Aligned_cols=203 Identities=19% Similarity=0.187 Sum_probs=167.9
Q ss_pred CCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 387 LDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
....++.|.+.++.+..++ ..+.++++|+.|++.+|.+. .+++..+..+++|++|++++|.+....+..|.++
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 4578999999999987765 67899999999998888753 4555557889999999999999665555678899
Q ss_pred CCCcEEeccC-CCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 466 IHLRYLNLSG-QKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 466 ~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|+.|++++ +.++.+|. .+..+++|++|++++|. ...+|. +..+++|+.|++++|.+.+..|..|..+++|++|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 9999999998 55777765 58899999999999998 556675 88999999999999998887788899999999998
Q ss_pred ceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 544 EVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
..++.+.+..+..+..+++|+.|++++|.+....+. .+..+++|+.|+|+.|.+
T Consensus 249 ----L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 249 ----VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD-------LFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ----CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-------SSTTCTTCCEEECCSSCE
T ss_pred ----eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH-------HhccccCCCEEEccCCCc
Confidence 566667777888899999999999999986533332 467789999999997753
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=5.5e-17 Score=161.57 Aligned_cols=180 Identities=17% Similarity=0.063 Sum_probs=149.7
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhc
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCE 487 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 487 (639)
+.++++++.+.+.++.+. .+|+.+ .++++.|++++|.+.+..|..+.++++|++|++++|.++.++.. +.
T Consensus 6 ~~~l~~l~~l~~~~~~l~------~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT------ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GT 75 (290)
T ss_dssp EECSTTCCEEECTTSCCS------SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SC
T ss_pred ccccCCccEEECCCCCCC------cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CC
Confidence 567889999988877743 455432 36899999999997777778899999999999999999988765 88
Q ss_pred CCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCC
Q 006588 488 LYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNL 567 (639)
Q Consensus 488 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L 567 (639)
+++|++|++++|. +..+|..+..+++|++|++++|.+.+..|..|..+++|++|+ ..+|.+....+..+..+++|
T Consensus 76 l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY----LKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE----CTTSCCCCCCTTTTTTCTTC
T ss_pred CCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE----CCCCCCCccChhhcccccCC
Confidence 9999999999998 668898899999999999999987665557789999999998 55666777777778999999
Q ss_pred CcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 568 EHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 568 ~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
+.|++++|.+... +. ..+..+++|+.|+|+.|.+.
T Consensus 151 ~~L~L~~N~l~~l-~~------~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 151 EKLSLANNNLTEL-PA------GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CEEECTTSCCSCC-CT------TTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCcc-CH------HHhcCcCCCCEEECCCCcCC
Confidence 9999999986532 22 24677899999999999865
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=6.4e-17 Score=164.88 Aligned_cols=194 Identities=18% Similarity=0.146 Sum_probs=147.6
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
.++.+.+.++.+..+|..+. ++|+.|++.+|.+ ..+++..+..+++|++|++++|.+.+..|..++++++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDI------SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcC------CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 46778888888888887664 7999998888874 244454488999999999999997776788899999999
Q ss_pred EEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcc--ccccccCCCCcCCccccceEe
Q 006588 470 YLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSV--RYMPVGIARLKSLRTLEEVRV 547 (639)
Q Consensus 470 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~~~~~ 547 (639)
+|++++|.++.+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+. +..|..+..+ +|++|+
T Consensus 106 ~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~---- 178 (332)
T 2ft3_A 106 KLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR---- 178 (332)
T ss_dssp EEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB----
T ss_pred EEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE----
Confidence 99999999999998765 89999999999955444455889999999999999874 3567777777 888888
Q ss_pred cCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 548 SGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
...+.+.. +|..+. ++|+.|++++|.+....+. .+..+++|+.|+|+.|.+
T Consensus 179 l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~-------~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 179 ISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELE-------DLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp CCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTT-------SSTTCTTCSCCBCCSSCC
T ss_pred CcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHH-------HhcCCCCCCEEECCCCcC
Confidence 33443443 455443 7899999999986544322 244455555555555543
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.3e-16 Score=157.50 Aligned_cols=195 Identities=16% Similarity=0.105 Sum_probs=154.0
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
.+.++.+.+.++.+..++ .+..+++|+.|++.+|.+.. ++ .+..+++|++|++++|.+.+..+..+.++++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~------~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD------IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC------CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC------ch--hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 467888988888887766 58889999999888887532 22 2788999999999999977666677888999
Q ss_pred CcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 468 LRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
|++|++++|.++.+|.. ++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--- 187 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR--- 187 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE---
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE---
Confidence 99999999999977664 68899999999999985544444568899999999999987665555578888999888
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
..+|.+.+..+..+..+++|+.|++.+|.+. +.+++|+.|++..|.++
T Consensus 188 -L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 188 -LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp -CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------------CCTTTTHHHHHHHHHTG
T ss_pred -CCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------------ccCcHHHHHHHHHHhCC
Confidence 5556677777777899999999999988753 33556777777666543
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=2.7e-16 Score=155.16 Aligned_cols=185 Identities=22% Similarity=0.247 Sum_probs=153.2
Q ss_pred ccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.|.+.++.+..++. .+.++++|+.|.+.+|.+. .+++..+..+++|++|++++|.+....+..+.
T Consensus 33 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------TLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 3455789999999999988774 7899999999999888753 55666678899999999999997666667788
Q ss_pred ccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccch-hhhhcccCceeecCCCCccccccccCCCCcCCcc
Q 006588 464 KLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPE-GIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRT 541 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 541 (639)
++++|++|++++|.++.+|. .+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+....+..|..+++|++
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 99999999999999997765 5789999999999999854 5554 4789999999999999866555556888999999
Q ss_pred ccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCC
Q 006588 542 LEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGD 580 (639)
Q Consensus 542 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 580 (639)
|+ ..++.+....+..+..+++|+.|++.+|.+...
T Consensus 186 L~----L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 186 LK----LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp EE----CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred EE----CCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 98 455566666666789999999999999986544
No 52
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=2.8e-16 Score=155.14 Aligned_cols=179 Identities=21% Similarity=0.164 Sum_probs=124.3
Q ss_pred CCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccC
Q 006588 387 LDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLI 466 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 466 (639)
..+.++.+.+.++.+..++ .+.++++|+.|.+.+|.+. .+++..+..+++|++|++++|.+.+..+..+++++
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQ------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCC------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccC------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 3567788888877776654 6777888888877777642 34444467778888888888886655566677788
Q ss_pred CCcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccce
Q 006588 467 HLRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEV 545 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~ 545 (639)
+|++|++++|.++.+|.. ++.+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+++|++|+
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-- 211 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW-- 211 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE--
Confidence 888888888888866654 57788888888888875544444457778888888888876665555567777777776
Q ss_pred EecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCC
Q 006588 546 RVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSD 583 (639)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 583 (639)
..+|.+ .+.+++|+.|++..|.+.+.+|.
T Consensus 212 --l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 212 --LHDNPW-------DCTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp --CCSSCB-------CCCTTTTHHHHHHHHHTGGGBBC
T ss_pred --ccCCCc-------cccCcHHHHHHHHHHhCCCcccC
Confidence 344422 24456777777777777666665
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=4.8e-17 Score=161.15 Aligned_cols=208 Identities=17% Similarity=0.103 Sum_probs=157.5
Q ss_pred ccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCc
Q 006588 400 KESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIE 479 (639)
Q Consensus 400 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~ 479 (639)
.+..+|..+. ++|+.|++.+|.+ ..+++..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCC------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CccccCCCCC--CCccEEECCCCcc------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3456776554 5899998888874 2344444788999999999999966656668899999999999999999
Q ss_pred ccc-hhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccc-cccccCCCCcCCccccceEecCCCccCCCc
Q 006588 480 KLP-EALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVR-YMPVGIARLKSLRTLEEVRVSGRGCLDGRK 557 (639)
Q Consensus 480 ~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~ 557 (639)
.++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. .+|..++.+++|++|+ ..++.+.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~----Ls~N~l~~~~ 165 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD----LSSNKIQSIY 165 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE----CCSSCCCEEC
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE----CCCCCCCcCC
Confidence 766 578999999999999999655555568999999999999998765 3688899999999998 5555566666
Q ss_pred cCCcccccCCC----cCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCC
Q 006588 558 ACRLESLKNLE----HLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPY 633 (639)
Q Consensus 558 ~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 633 (639)
+..+..+++|+ .|++++|.+....+. .....+|+.|+|+.|.+..+ ....+..+++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~--------~~~~~~L~~L~L~~n~l~~~------------~~~~~~~l~~ 225 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--------AFKEIRLKELALDTNQLKSV------------PDGIFDRLTS 225 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTT--------SSCSCCEEEEECCSSCCSCC------------CTTTTTTCCS
T ss_pred HHHhhhhhhccccceeeecCCCcccccCcc--------ccCCCcccEEECCCCceeec------------CHhHhccccc
Confidence 77788888888 677788875432222 22234899999999986521 1123456777
Q ss_pred CcceeC
Q 006588 634 LKELAI 639 (639)
Q Consensus 634 L~~L~l 639 (639)
|+.|+|
T Consensus 226 L~~L~l 231 (276)
T 2z62_A 226 LQKIWL 231 (276)
T ss_dssp CCEEEC
T ss_pred ccEEEc
Confidence 777764
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=160.24 Aligned_cols=199 Identities=15% Similarity=0.031 Sum_probs=157.4
Q ss_pred CCceEEEEEEecccC-cccccc--cCCCCccEEEeeccccCCCCchhhhHHHHHhhC-----CceeEEecCCCCCCCccc
Q 006588 388 DEKVRHLMLIIGKES-TFPIST--CRTKRIRSLLIECRRFDHSSLNGEILEELFREL-----TSLRALDFPSLYLPSEIP 459 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~-~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p 459 (639)
...++.+.+.++.+. .+|..+ ..+++|+.|++.+|.+.. +|.. +..+ ++|++|++++|.+.+..|
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT------RDAW-LAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS------SSSH-HHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc------hhHH-HHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 478999999999986 678776 899999999999988632 2322 4445 899999999999877777
Q ss_pred ccccccCCCcEEeccCCCCcc---cchhh--hcCCCccEEecCCCCCcc--ccchh-hhhcccCceeecCCCCcccccc-
Q 006588 460 RNIKKLIHLRYLNLSGQKIEK---LPEAL--CELYNLEKLDICSCSCLK--ELPEG-IGKLINMKYLLNRDTDSVRYMP- 530 (639)
Q Consensus 460 ~~~~~l~~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~~~--~lp~~-~~~l~~L~~L~l~~n~~~~~~p- 530 (639)
..++++++|++|++++|++.. +|..+ +.+++|++|++++|.+.. .++.. +..+++|++|++++|.+.+..|
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 246 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence 899999999999999999763 45555 899999999999998542 33333 3577999999999998777665
Q ss_pred ccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 531 VGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 531 ~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
..+..+++|++|+ ..+|.++ .+|..+. ++|+.|++++|.+.+. |. +..+++|+.|+|+.|.++
T Consensus 247 ~~~~~l~~L~~L~----Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--------~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 247 PSCDWPSQLNSLN----LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--------PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCCCCCTTCCEEE----CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--------TTTSCEEEEEECTTCTTT
T ss_pred hhhhhcCCCCEEE----CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--------HhhCCCCCEEeccCCCCC
Confidence 4466688899988 5555555 6677676 8999999999986443 32 667899999999988755
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=6.5e-18 Score=170.51 Aligned_cols=215 Identities=16% Similarity=0.158 Sum_probs=161.1
Q ss_pred eEEEEEEecccCc--cccccc-------CCCCccEEEeeccccCCCCchhhhHHHHH-hhCCceeEEecCCCCCCCcccc
Q 006588 391 VRHLMLIIGKEST--FPISTC-------RTKRIRSLLIECRRFDHSSLNGEILEELF-RELTSLRALDFPSLYLPSEIPR 460 (639)
Q Consensus 391 ~~~l~l~~~~~~~--~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~ 460 (639)
++.+.+.++.+.. +|..+. ++++|+.|++.+|.+ .+.+|..++ ..+++|++|++++|.+.+. |.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~ 138 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-----TGTAPPPLLEATGPDLNILNLRNVSWATR-DA 138 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-----BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-----cchhHHHHHHhcCCCccEEEccCCCCcch-hH
Confidence 5555555555532 444444 799999999999886 445555532 7899999999999997666 88
Q ss_pred ccccc-----CCCcEEeccCCCCcccc-hhhhcCCCccEEecCCCCCccc--cchhh--hhcccCceeecCCCCccc--c
Q 006588 461 NIKKL-----IHLRYLNLSGQKIEKLP-EALCELYNLEKLDICSCSCLKE--LPEGI--GKLINMKYLLNRDTDSVR--Y 528 (639)
Q Consensus 461 ~~~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--lp~~~--~~l~~L~~L~l~~n~~~~--~ 528 (639)
.++.+ ++|++|++++|.++.++ ..++.+++|++|++++|.+.+. +|..+ ..+++|++|++++|.+.+ .
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 78777 89999999999999776 6889999999999999997665 34455 889999999999997652 3
Q ss_pred cccc-CCCCcCCccccceEecCCCccCCCcc-CCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 529 MPVG-IARLKSLRTLEEVRVSGRGCLDGRKA-CRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 529 ~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
++.. +..+++|++|+ ...|.+.+..| ..+..+++|+.|++++|.+. .+|. .+. ++|+.|+|++|
T Consensus 219 ~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-------~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 219 VCSALAAARVQLQGLD----LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-------GLP--AKLSVLDLSYN 284 (312)
T ss_dssp HHHHHHHTTCCCSEEE----CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-------SCC--SEEEEEECCSS
T ss_pred HHHHHHhcCCCCCEEE----CCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh-------hcc--CCceEEECCCC
Confidence 3322 35678899988 55666666665 45677899999999999865 4443 122 78999999999
Q ss_pred cCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 607 EKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
.+.. ...+..+++|+.|+|
T Consensus 285 ~l~~--------------~p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 285 RLDR--------------NPSPDELPQVGNLSL 303 (312)
T ss_dssp CCCS--------------CCCTTTSCEEEEEEC
T ss_pred CCCC--------------ChhHhhCCCCCEEec
Confidence 8652 122556778887764
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.66 E-value=1.9e-16 Score=173.50 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=97.5
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..++ ..+.++++|+.|++.+|.+ . .+++..+..+++|++|++++|.+ ..+|..
T Consensus 48 ~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-----~-~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-- 118 (562)
T 3a79_B 48 KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI-----R-SLDFHVFLFNQDLEYLDVSHNRL-QNISCC-- 118 (562)
T ss_dssp TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC-----C-EECTTTTTTCTTCCEEECTTSCC-CEECSC--
T ss_pred CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC-----C-cCCHHHhCCCCCCCEEECCCCcC-CccCcc--
Confidence 344578999999999887776 6789999999998888874 2 34444478899999999999994 467765
Q ss_pred ccCCCcEEeccCCCCcccc--hhhhcCCCccEEecCCCCCccccchhhhhcccC--ceeecCCCCc
Q 006588 464 KLIHLRYLNLSGQKIEKLP--EALCELYNLEKLDICSCSCLKELPEGIGKLINM--KYLLNRDTDS 525 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L--~~L~l~~n~~ 525 (639)
.+++|++|++++|.++.+| ..++.+++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 7889999999999998654 6888999999999988875431 23444444 6666666654
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.66 E-value=1.2e-16 Score=179.49 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=123.2
Q ss_pred ccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..+|. .+.++++|++|++.+|.+ . .+++..+..+++|++|++++|.+.+..+..|+
T Consensus 21 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-----S-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC-----C-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc-----C-ccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 3455789999999998877764 588999999998887764 2 33444478899999999999985544445688
Q ss_pred ccCCCcEEeccCCCCcccc-hhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCC--CCcCCc
Q 006588 464 KLIHLRYLNLSGQKIEKLP-EALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIA--RLKSLR 540 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~ 540 (639)
++++|++|++++|.++.+| ..++.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 8999999999999988776 4688899999999999887666677778888888888888876555444332 345666
Q ss_pred cccceEecCCCccCCCccCCccc
Q 006588 541 TLEEVRVSGRGCLDGRKACRLES 563 (639)
Q Consensus 541 ~L~~~~~~~~~~~~~~~~~~~~~ 563 (639)
+|+ ...+.+.+..|..+..
T Consensus 175 ~L~----L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 175 KLE----LSSNQIKEFSPGCFHA 193 (680)
T ss_dssp EEE----CTTCCCCCBCTTGGGG
T ss_pred EEE----CCCCcccccChhhhhh
Confidence 666 3333344444444433
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=175.35 Aligned_cols=149 Identities=16% Similarity=0.147 Sum_probs=119.7
Q ss_pred ccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..++ ..+.++++|+.|++.+|.+ ..+++..+..+++|++|++++|.+....|..|+
T Consensus 24 ~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC------CccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 345678999999999887765 5788999999998888774 244555578899999999999996666667888
Q ss_pred ccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCccccccccCCCCcCC
Q 006588 464 KLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSL 539 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 539 (639)
++++|++|++++|.++.+|. .++.+++|++|++++|.+.. .+|..++++++|++|++++|.+.+..|..++.+.+|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 89999999999999888775 68889999999999988655 478888999999999999997766666666666666
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=4.6e-16 Score=156.48 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=132.3
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
+.++.+.+.++.+..+| .+..+++|+.|++.+|.+. .+++ +..+++|++|++++|.+. .++ .+..+++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~------~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L 109 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT------DLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSI 109 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC------CCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTC
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC------CChh--HccCCCCCEEEccCCcCC-Cch-hhcCCCCC
Confidence 56777777777777666 5777888888877777642 2333 677888888888888843 344 47778888
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
+.|++++|.++.+|. +..+++|+.|++++|. ...+|. +..+++|++|++++|.+. .+|. +..+++|+.|+ .
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~----l 180 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLK----A 180 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEE----C
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEE----C
Confidence 888888888887764 7788888888888887 444554 777888888888888654 3444 66777777777 3
Q ss_pred CCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 549 GRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.++.+....+ +..+++|+.|++++|.+.+.. .+..+++|+.|+++.|.++
T Consensus 181 ~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVS---------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---------GGTTCTTCCEEEEEEEEEE
T ss_pred CCCccCcChh--hcCCCCCCEEEccCCccCccc---------cccCCCCCCEEEccCCeee
Confidence 3343443333 777888888888887653221 1567788888888877754
No 60
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=7.3e-16 Score=158.10 Aligned_cols=210 Identities=18% Similarity=0.190 Sum_probs=154.2
Q ss_pred cCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 386 SLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
...++++.+.+.++.+..++. +..+++|+.|.+.+|.+. .++ . +..+++|++|++++|.+. .++. +..+
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~------~~~-~-~~~l~~L~~L~l~~n~i~-~~~~-~~~l 131 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT------DIS-A-LQNLTNLRELYLNEDNIS-DISP-LANL 131 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------CCG-G-GTTCTTCSEEECTTSCCC-CCGG-GTTC
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc------Cch-H-HcCCCcCCEEECcCCccc-Cchh-hccC
Confidence 345788889888888877776 888899999988887753 222 2 778889999999998854 4444 7788
Q ss_pred CCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccce
Q 006588 466 IHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEV 545 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~ 545 (639)
++|+.|++++|.....+..+..+++|++|++++|. ...++. +..+++|+.|++++|.+. .++. +..+++|+.|+
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~-- 205 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFT-- 205 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEE--
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccc-cccc-ccCCCccceee--
Confidence 88999999988655444558888999999999888 444554 788889999999998654 4444 66777777776
Q ss_pred EecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHh
Q 006588 546 RVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLL 625 (639)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 625 (639)
...+.+....+ +..+++|+.|++++|.+... +. +..+++|+.|+++.|.+.. +
T Consensus 206 --l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~--------~~~l~~L~~L~l~~n~l~~--------------~ 258 (347)
T 4fmz_A 206 --AYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP--------LANLSQLTWLEIGTNQISD--------------I 258 (347)
T ss_dssp --CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG--------GTTCTTCCEEECCSSCCCC--------------C
T ss_pred --cccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc--------hhcCCCCCEEECCCCccCC--------------C
Confidence 33333333333 78889999999998875321 11 6678999999999887552 2
Q ss_pred hcCCCCCCCcceeC
Q 006588 626 EALRPPPYLKELAI 639 (639)
Q Consensus 626 ~~l~~~~~L~~L~l 639 (639)
..+..+++|+.|++
T Consensus 259 ~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 259 NAVKDLTKLKMLNV 272 (347)
T ss_dssp GGGTTCTTCCEEEC
T ss_pred hhHhcCCCcCEEEc
Confidence 45677888888865
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=5.5e-17 Score=177.44 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=149.2
Q ss_pred cCCCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccc
Q 006588 386 SLDEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKK 464 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 464 (639)
...+.++.+.+.++.+..+ |..+.++++|+.|++.+|.+ . .+++..+..+++|++|++++|.+.+..|..+++
T Consensus 23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-----~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-----N-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC-----C-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc-----C-ccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 4457899999999998776 56799999999998888874 2 345445889999999999999977777777999
Q ss_pred cCCCcEEeccCCCCcc--cchhhhcCCCccEEecCCCCCccccc-hhhhhcccCceeecCCCCccccccccCCCCcCCcc
Q 006588 465 LIHLRYLNLSGQKIEK--LPEALCELYNLEKLDICSCSCLKELP-EGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRT 541 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 541 (639)
+++|++|++++|.++. .|..++.+++|++|++++|...+.+| ..+.++++|++|++++|.+.+..|..++.+++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999984 46789999999999999998677776 46899999999999999988888999998999988
Q ss_pred ccceEecCCCccCCCccCCc-ccccCCCcCCceeeeCcC
Q 006588 542 LEEVRVSGRGCLDGRKACRL-ESLKNLEHLQICGIRGLG 579 (639)
Q Consensus 542 L~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~ 579 (639)
|++.... . ..+|..+ ..+++|+.|++++|.+.+
T Consensus 177 L~l~~n~----~-~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 177 LTLHLSE----S-AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEECSB----S-TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred EecccCc----c-cccchhhHhhcccccEEEccCCcccc
Confidence 8743222 2 2234333 568899999998888654
No 62
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.9e-16 Score=153.13 Aligned_cols=179 Identities=17% Similarity=0.146 Sum_probs=134.4
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
..+.+.+.++.+..+|..+. ++++.|.+.+|.+. .+++..+..+++|++|++++|.+.+..+..+.++++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA------TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC------ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 34566777777778887665 58888887777743 33333477888999999999887776677788888999
Q ss_pred EEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 470 YLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 470 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
+|++++|.++.+|. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..++.+++|++|+ .
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----L 162 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS----L 162 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----C
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE----C
Confidence 99999999887764 467888999999988884433334467888999999998876544444678888888887 5
Q ss_pred CCCccCCCccCCcccccCCCcCCceeeeCcCC
Q 006588 549 GRGCLDGRKACRLESLKNLEHLQICGIRGLGD 580 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 580 (639)
.+|.+.+..+..+..+++|+.|++.+|.+...
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55666666677788888899999988887554
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=155.68 Aligned_cols=202 Identities=15% Similarity=0.055 Sum_probs=156.8
Q ss_pred CceEEEEEEecccC-cccccc--cCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 389 EKVRHLMLIIGKES-TFPIST--CRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 389 ~~~~~l~l~~~~~~-~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
..++.+.+.++.+. ..|..+ ..+++|+.|++++|.+.... ..++...+..+++|++|++++|.+.+..|..++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh--hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45899999999885 566666 89999999999999864211 11222335679999999999999877777889999
Q ss_pred CCCcEEeccCCCCcc---cch--hhhcCCCccEEecCCCCCccccchh----hhhcccCceeecCCCCccccccccCCCC
Q 006588 466 IHLRYLNLSGQKIEK---LPE--ALCELYNLEKLDICSCSCLKELPEG----IGKLINMKYLLNRDTDSVRYMPVGIARL 536 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~---lp~--~i~~l~~L~~L~l~~~~~~~~lp~~----~~~l~~L~~L~l~~n~~~~~~p~~~~~l 536 (639)
++|++|++++|++.. ++. .++.+++|++|++++|.+ ..+|.. +..+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 999999999999763 433 347899999999999984 444442 4788999999999999877778887776
Q ss_pred ---cCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 537 ---KSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 537 ---~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
++|++|+ ...|.+. .+|..+. ++|+.|++++|.+.+. +. +..+++|+.|+|+.|.+.
T Consensus 248 ~~~~~L~~L~----Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 248 MWSSALNSLN----LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCTTCCCEE----CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--------TTSCCCCSCEECSSTTTS
T ss_pred cCcCcCCEEE----CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--------hhhCCCccEEECcCCCCC
Confidence 5888887 4455555 5677664 7999999999986532 22 456799999999998765
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=7.8e-17 Score=172.64 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=66.0
Q ss_pred ceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 390 KVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
+++.|.+.++.+..++ ..+..+++|+.|++++|.+ .+..+ +..+++|++|++++|.+. .+| ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~~~~---l~~l~~L~~L~Ls~N~l~-~l~----~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----YETLD---LESLSTLRTLDLNNNYVQ-ELL----VGPSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-----EEEEE---CTTCTTCCEEECCSSEEE-EEE----ECTTC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-----CCCcc---cccCCCCCEEEecCCcCC-CCC----CCCCc
Confidence 5666666666665543 4566666666665555553 22222 555666666666666532 222 11344
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCC-CCcCCcccc
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIA-RLKSLRTLE 543 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~ 543 (639)
++|++++|.++.+|.. .+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4444444444433321 234444444444443333333344444444444444444433333332 344444443
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=174.01 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=112.7
Q ss_pred cCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch--hhh
Q 006588 409 CRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE--ALC 486 (639)
Q Consensus 409 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~--~i~ 486 (639)
..+++|+.|++.+|.+... +..+.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.++..+. .+.
T Consensus 344 ~~~~~L~~L~l~~n~l~~~---~~~~~~-~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFK---GCCSQS-DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CBCTTCCEEECCSSCCBEE---EEEEHH-HHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred ccCCCCCEEeCcCCccCcc---cccccc-ccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhh
Confidence 4455555555555443100 001222 556677777777777633 333336667777777777777664432 466
Q ss_pred cCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcc-ccccccCCCCcCCccccceEecCCCccCCCccCCccccc
Q 006588 487 ELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSV-RYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLK 565 (639)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~ 565 (639)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+. +.+|..++.+++|++|+ ..++.+.+..|..+..++
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~----l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD----LSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE----CTTSCCCEECTTTTTTCT
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE----CCCCccccCChhhhhccc
Confidence 6777777777777766666666677777777777777654 35666677777777776 444455555566677777
Q ss_pred CCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 566 NLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 566 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
+|+.|++++|.+.+..+. .+.++++|+.|+++.|.+.
T Consensus 495 ~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDG-------IFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECCSSCCSCCCTT-------TTTTCTTCCEEECCSSCBC
T ss_pred CCCEEeCCCCcCCCCCHH-------HhhcccCCcEEEecCCccc
Confidence 777777777765433222 3556677777777766543
No 66
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=1.4e-15 Score=156.02 Aligned_cols=226 Identities=17% Similarity=0.260 Sum_probs=174.3
Q ss_pred ceeEEecCCcccccccccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEe
Q 006588 369 ECLSLEINGSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALD 448 (639)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 448 (639)
+.+..........+. -.....++.+.+.++.+..++ .+.++++|+.|.+.+|.+. .+++ +..+++|+.|+
T Consensus 69 ~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~------~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 69 EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS------DISP--LANLTKMYSLN 138 (347)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCC------CCGG--GTTCTTCCEEE
T ss_pred cEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCccc------Cchh--hccCCceeEEE
Confidence 344444444444332 345678999999999888876 6899999999999888753 3333 78899999999
Q ss_pred cCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccc
Q 006588 449 FPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRY 528 (639)
Q Consensus 449 l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~ 528 (639)
+++|.....++. +..+++|++|++++|.+..++. +..+++|+.|++++|. ...++. +..+++|+.|++++|.+...
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~ 214 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQITDI 214 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCCCCC
Confidence 999986665554 8899999999999999998876 8899999999999998 555665 88999999999999976544
Q ss_pred ccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 529 MPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 529 ~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
.+ +..+++|++|+ ..++.+....+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+++.|.+
T Consensus 215 ~~--~~~~~~L~~L~----l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--------~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 215 TP--VANMTRLNSLK----IGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--------AVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp GG--GGGCTTCCEEE----CCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--------GGTTCTTCCEEECCSSCC
T ss_pred ch--hhcCCcCCEEE----ccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--------hHhcCCCcCEEEccCCcc
Confidence 33 77888999988 34444444333 8899999999999997543 21 367889999999999976
Q ss_pred CcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 609 EKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
.. +..+..+++|+.|+|
T Consensus 278 ~~--------------~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 278 SD--------------ISVLNNLSQLNSLFL 294 (347)
T ss_dssp CC--------------CGGGGGCTTCSEEEC
T ss_pred CC--------------ChhhcCCCCCCEEEC
Confidence 52 134566788888865
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.8e-16 Score=153.42 Aligned_cols=197 Identities=15% Similarity=0.167 Sum_probs=154.1
Q ss_pred CCCceEEEEEEecccCcccc-cccCCCCccEEEeeccc-cCCCCchhhhHHHHHhhCCceeEEecCC-CCCCCccccccc
Q 006588 387 LDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRR-FDHSSLNGEILEELFRELTSLRALDFPS-LYLPSEIPRNIK 463 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~ 463 (639)
....++.+.+.++.+..+|. .+..+++|+.|++.+|. + ..+++..+..+++|++|++++ |.+....+..|.
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l------~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL------QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC------CEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc------ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 55789999999999988875 68899999999998885 4 245554578899999999998 885554557788
Q ss_pred ccCCCcEEeccCCCCcccchhhhcCCCcc---EEecCCC-CCccccch-hhhhcccCc-eeecCCCCccccccccCCCCc
Q 006588 464 KLIHLRYLNLSGQKIEKLPEALCELYNLE---KLDICSC-SCLKELPE-GIGKLINMK-YLLNRDTDSVRYMPVGIARLK 537 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~-~~~~~lp~-~~~~l~~L~-~L~l~~n~~~~~~p~~~~~l~ 537 (639)
++++|++|++++|.++.+|. +..+++|+ +|++++| . ...+|. .+.++++|+ .|++++|.+. .+|......+
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~ 179 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcc-hhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC
Confidence 99999999999999999887 88888888 9999999 6 555554 588899999 9999999765 6776544447
Q ss_pred CCccccceEecCCC-ccCCCccCCcccc-cCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 538 SLRTLEEVRVSGRG-CLDGRKACRLESL-KNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 538 ~L~~L~~~~~~~~~-~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
+|++|+ ..++ .+....+..+..+ ++|+.|++++|.+. .++. ..+.+|+.|+++.+
T Consensus 180 ~L~~L~----L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~---------~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 KLDAVY----LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS---------KGLEHLKELIARNT 236 (239)
T ss_dssp EEEEEE----CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC---------TTCTTCSEEECTTC
T ss_pred CCCEEE----cCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh---------hHhccCceeeccCc
Confidence 888887 4444 3555556778888 99999999998764 3332 14578888888654
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=5.9e-16 Score=155.69 Aligned_cols=188 Identities=19% Similarity=0.262 Sum_probs=148.2
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhc
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCE 487 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 487 (639)
..++++|+.|.+.++.+. .++ . +..+++|++|++++|.+. .++. +..+++|++|++++|.++.++ .+..
T Consensus 37 ~~~l~~L~~L~l~~~~i~------~l~-~-~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT------TIE-G-VQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp HHHHHTCCEEECTTSCCC------CCT-T-GGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred HHHcCCcCEEEeeCCCcc------Cch-h-hhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 456889999998888753 233 2 788999999999999954 4554 899999999999999999886 6899
Q ss_pred CCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCC
Q 006588 488 LYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNL 567 (639)
Q Consensus 488 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L 567 (639)
+++|+.|++++|. ...+|. +..+++|++|++++|.+.+ +|. ++.+++|++|+ ...+.+....+ +..+++|
T Consensus 106 l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~----l~~n~l~~~~~--l~~l~~L 175 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS----IGNAQVSDLTP--LANLSKL 175 (308)
T ss_dssp CTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE----CCSSCCCCCGG--GTTCTTC
T ss_pred CCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE----ccCCcCCCChh--hcCCCCC
Confidence 9999999999999 555665 8999999999999997644 444 77888999988 44444444333 8899999
Q ss_pred CcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 568 EHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 568 ~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
+.|++++|.+.+ ++. +..+++|+.|+|+.|.+.. ...+..+++|+.|+|
T Consensus 176 ~~L~l~~n~l~~-~~~--------l~~l~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~l 224 (308)
T 1h6u_A 176 TTLKADDNKISD-ISP--------LASLPNLIEVHLKNNQISD--------------VSPLANTSNLFIVTL 224 (308)
T ss_dssp CEEECCSSCCCC-CGG--------GGGCTTCCEEECTTSCCCB--------------CGGGTTCTTCCEEEE
T ss_pred CEEECCCCccCc-Chh--------hcCCCCCCEEEccCCccCc--------------cccccCCCCCCEEEc
Confidence 999999998643 222 6788999999999998653 113567788887764
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=5.6e-16 Score=174.00 Aligned_cols=115 Identities=12% Similarity=0.000 Sum_probs=57.6
Q ss_pred ccEEecCCCCCccccchhhhhccc--CceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCC
Q 006588 491 LEKLDICSCSCLKELPEGIGKLIN--MKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLE 568 (639)
Q Consensus 491 L~~L~l~~~~~~~~lp~~~~~l~~--L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~ 568 (639)
|+.|++++|.+.+..|..+..++. |+.|++++|.+.+..|..++.+++|++|+ ...+.+.+..|..+..+++|+
T Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~----L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF----LEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE----CCSCCBSEECTTTTTTCTTCC
T ss_pred ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee----CCCCccCccChhhhcCCCCcc
Confidence 344444444433333444444433 66666666655555555566666666665 333444445555566666666
Q ss_pred cCCceeeeCcCCCC--ChhhhcccccccccCcceEEEEeccCC
Q 006588 569 HLQICGIRGLGDVS--DVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 569 ~L~l~~n~~~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.|++.+|...+.++ .........+..+++|+.|+++.|.+.
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 66665443222111 111111124556777777777776644
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=3.9e-16 Score=171.08 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=116.7
Q ss_pred eEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcE
Q 006588 391 VRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRY 470 (639)
Q Consensus 391 ~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 470 (639)
.+.+.+.++.+..+|..+. ++|+.|++++|.+. .+++..+..+++|++|++++|.+.+..|..|.++++|++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSIS------ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCC------CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCcc------ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 3788888899988997665 89999988888753 445445899999999999999977777888999999999
Q ss_pred EeccCCCCcccchhhhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCccccccccCCCCcCC--ccccc
Q 006588 471 LNLSGQKIEKLPEALCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSL--RTLEE 544 (639)
Q Consensus 471 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L--~~L~~ 544 (639)
|++++|.++.+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.. ..+..+++| ++|++
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILL 176 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEe
Confidence 99999999999987 89999999999999654 356789999999999999997654 234455555 66653
No 71
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=4.7e-16 Score=178.47 Aligned_cols=143 Identities=17% Similarity=0.167 Sum_probs=100.6
Q ss_pred CCCceEEEEEEeccc-Ccc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccc--c
Q 006588 387 LDEKVRHLMLIIGKE-STF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRN--I 462 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~-~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--~ 462 (639)
....++.|.+.++.. ..+ |..+.++++|+.|++.+|.+ . .+++..+.++++|++|++++|.+.+..|.. +
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l-----~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI-----Y-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC-----C-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC-----c-ccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 446788888888743 444 67788888888887777764 2 333333778888888888888876655544 7
Q ss_pred cccCCCcEEeccCCCCccc--chhhhcCCCccEEecCCCCCccccchhhhhc--ccCceeecCCCCccccccccCCC
Q 006588 463 KKLIHLRYLNLSGQKIEKL--PEALCELYNLEKLDICSCSCLKELPEGIGKL--INMKYLLNRDTDSVRYMPVGIAR 535 (639)
Q Consensus 463 ~~l~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~n~~~~~~p~~~~~ 535 (639)
+++++|++|++++|.++.+ +..++.+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+..|..++.
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 7888888888888888754 3467888888888888888666666666665 56666666666555555444433
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.5e-16 Score=174.03 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=156.4
Q ss_pred EecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCC
Q 006588 397 IIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQ 476 (639)
Q Consensus 397 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 476 (639)
..+.+..+|..+. ++|+.|++.+|.+ . .+++..+..+++|++|++++|.+.+..|..|+++++|++|++++|
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~l-----~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFNKI-----T-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSCC-----C-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCccccccccCC--CCccEEECcCCcc-----C-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3456677887664 7999998888874 2 333334789999999999999977777788999999999999999
Q ss_pred CCcccchh-hhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCcccccc-ccCCCCcCCccccceEecCCCcc
Q 006588 477 KIEKLPEA-LCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMP-VGIARLKSLRTLEEVRVSGRGCL 553 (639)
Q Consensus 477 ~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~ 553 (639)
.++.+|+. ++.+++|++|++++|.+.. ..|..+.++++|++|++++|...+.+| ..++.+++|++|++ ..+.+
T Consensus 85 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L----~~n~l 160 (549)
T 2z81_A 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI----KALSL 160 (549)
T ss_dssp CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE----EETTC
T ss_pred ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec----cCCcc
Confidence 99988765 9999999999999999654 467779999999999999998667776 56889999999983 44556
Q ss_pred CCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCc
Q 006588 554 DGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEK 610 (639)
Q Consensus 554 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 610 (639)
.+..|..+..+++|+.|++..|... .++ ...+..+++|+.|+++.|.+..
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~------~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESA-FLL------EIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBST-THH------HHHHHSTTTBSEEEEESCBCTT
T ss_pred cccChhhhhccccCceEecccCccc-ccc------hhhHhhcccccEEEccCCcccc
Confidence 6778899999999999999888742 111 1123457889999999887653
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=2.4e-15 Score=159.62 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=131.1
Q ss_pred CCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccC
Q 006588 387 LDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLI 466 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 466 (639)
....++.+.+.++.+..+| +..+++|+.|++.+|.+.. ++ +..+++|++|++++|.+.+ +| ++.++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~------~~---~~~l~~L~~L~L~~N~l~~-l~--~~~l~ 127 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN------LD---VTPLTKLTYLNCDTNKLTK-LD--VSQNP 127 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC------CC---CTTCTTCCEEECCSSCCSC-CC--CTTCT
T ss_pred ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce------ee---cCCCCcCCEEECCCCcCCe-ec--CCCCC
Confidence 4467778888887777665 7777888888777776532 22 5677788888888887544 44 67778
Q ss_pred CCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 467 HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
+|++|++++|.++.++ ++.+++|++|++++|...+.++ +..+++|++|++++|.+.+ +| ++.+++|+.|+
T Consensus 128 ~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~--- 197 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLN--- 197 (457)
T ss_dssp TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEE---
T ss_pred cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec--cccCCCCCEEE---
Confidence 8888888888887764 6778888888888886566663 6677888888888886544 55 66777777776
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
...+.+.+. .++.+++|+.|++++|.+.+ +| +..+++|+.|+++.|.+.
T Consensus 198 -l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---------~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 198 -CDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---------VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp -CCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---------CTTCTTCSEEECCSSCCS
T ss_pred -CcCCcCCee---ccccCCCCCEEECcCCcccc-cC---------ccccCCCCEEEeeCCcCC
Confidence 334444433 37778888888888887643 22 556788888888888755
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=1.6e-15 Score=147.74 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=143.3
Q ss_pred CCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCC
Q 006588 412 KRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYN 490 (639)
Q Consensus 412 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~ 490 (639)
.+.+.+++.++.+. .+|..+ ...++.|++++|.+.+..+..+.++++|++|++++|.++.++. .+..+++
T Consensus 14 ~~~~~l~~~~~~l~------~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQGKSLD------SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGGTEEECTTCCCS------SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCeEEecCCCCcc------ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc
Confidence 45677877776642 444432 3689999999999877778889999999999999999997665 5789999
Q ss_pred ccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcC
Q 006588 491 LEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHL 570 (639)
Q Consensus 491 L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L 570 (639)
|++|++++|.+....|..+..+++|++|++++|.+.+..+..+..+++|++|+ ..+|.+.+..+..+..+++|+.|
T Consensus 85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~----Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR----LNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----CCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE----CcCCcCCccCHHHcCcCcCCCEE
Confidence 99999999996655556678999999999999986655455578899999998 55666777777789999999999
Q ss_pred CceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 571 QICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 571 ~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
++++|.+.+..+. .+..+++|+.|+|+.|.+.
T Consensus 161 ~L~~N~l~~~~~~-------~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 161 SLSTNQLQSVPHG-------AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCSCCCTT-------TTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccCHH-------HHhCCCCCCEEEeeCCcee
Confidence 9999987544332 4778899999999999865
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=2.2e-16 Score=159.71 Aligned_cols=191 Identities=12% Similarity=-0.030 Sum_probs=116.9
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
...++.+.+.++.+...+. +..+++|+.|++.+|.+. .+ ..+++|++|++++|.+.+..+. .+++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~------~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~ 121 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ------EL-----LVGPSIETLHAANNNISRVSCS---RGQG 121 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE------EE-----EECTTCCEEECCSSCCSEEEEC---CCSS
T ss_pred CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc------cc-----cCCCCcCEEECCCCccCCcCcc---ccCC
Confidence 3556666666666554443 666666666666655532 11 1235666666666664333322 2566
Q ss_pred CcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhh-hhcccCceeecCCCCccccccccCCCCcCCccccce
Q 006588 468 LRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGI-GKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEV 545 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~ 545 (639)
|+.|++++|.++.+++ .++.+++|++|++++|.+....|..+ ..+++|++|++++|.+. .+|. ...+++|++|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~-- 197 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLD-- 197 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEE--
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEE--
Confidence 7777777777776544 66777788888888777555555555 36777888888887643 3343 23467777776
Q ss_pred EecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 546 RVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
..+|.+.+ +|..+..+++|+.|++++|.+. .++. .+..+++|+.|+|+.|.+
T Consensus 198 --Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~-------~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 198 --LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK-------ALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp --CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT-------TCCCCTTCCEEECTTCCC
T ss_pred --CCCCcCCc-chhhhcccCcccEEECcCCccc-chhh-------HhhcCCCCCEEEccCCCc
Confidence 33343443 3444777788888888777653 2222 356677788888877764
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=5.3e-15 Score=158.03 Aligned_cols=189 Identities=19% Similarity=0.209 Sum_probs=88.3
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+.++.+..++ .+.++++|+.|.+.+|.+. + +++ +..+++|+.|++++|.+.+ ++ .+..+++|
T Consensus 177 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~-----~-~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 245 (466)
T 1o6v_A 177 TTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQIS-----D-ITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNL 245 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-----C-CGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTC
T ss_pred CCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccc-----c-ccc--ccccCCCCEEECCCCCccc-ch-hhhcCCCC
Confidence 44555555555544443 2455555555555544431 1 111 3445555555555555322 22 34455555
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
+.|++++|.++.++. +..+++|+.|++++|.+ ..+|. +..+++|+.|++++|.+.+. +. ++.+++|+.|+ .
T Consensus 246 ~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~----L 316 (466)
T 1o6v_A 246 TDLDLANNQISNLAP-LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLT----L 316 (466)
T ss_dssp SEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEE----C
T ss_pred CEEECCCCccccchh-hhcCCCCCEEECCCCcc-Ccccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEE----C
Confidence 555555555554443 45555555555555552 22333 44555555555555543322 22 44445555554 2
Q ss_pred CCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 549 GRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
.++.+.+..| +..+++|+.|++++|.+.+. + .+.++++|+.|+++.|.+
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--------~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--------SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--------GGTTCTTCCEEECCSSCC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc-h--------hhccCCCCCEEeCCCCcc
Confidence 2233333333 44555555555555543221 1 244455555555555543
No 77
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.60 E-value=4.5e-14 Score=146.96 Aligned_cols=301 Identities=12% Similarity=0.017 Sum_probs=181.3
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH----hcCCceEEEEeCCCCchH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK----RQFDKILWVCVSETFDEF 99 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~ 99 (639)
..+..|+||+++++++.+++..... ....+.+.|+|++|+|||++|+.+++..... +.-..++|+++....+..
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 3457899999999999999865422 2356789999999999999999998843211 112457788988888899
Q ss_pred HHHHHHHHHccCCCCC-cccHHHHHHHHHHhc--CCceEEEEEeCCCCCCcc--CchhhhHhhhcC-----CCCcEEEEE
Q 006588 100 RIAKAMLEALTGSTSN-LDALQSLLISIDESI--AGKRFLLVLDDVWDGDYI--KWEPFYHCLKKG-----LHGSKILIT 169 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~--~~~~l~~~l~~~-----~~~~~ilvT 169 (639)
.++..++..++..... .....+....+...+ .+++++||||+++..... ....+...+... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999998764322 123445555555554 356899999999875332 222333323221 345678888
Q ss_pred ccchHHHh-----hhccc--ceEECCCCCHHHHHHHHHHHhhC--CCCchhhhHHHHHHHHHHHHcC---CchhHH-HHH
Q 006588 170 TRNESIAS-----MMRST--DVISIKELAEEECWALFKQLAFF--GRSTEECEKLEQIGQRIARKCK---GLPLAA-KTM 236 (639)
Q Consensus 170 sr~~~~~~-----~~~~~--~~~~l~~l~~~ea~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~ 236 (639)
|+...... ..... ..+.+.+++.++..+++...+.. ...... .+.++.+++.++ |.|..+ ..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD----PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC----SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 87652211 11122 47899999999999999887532 111111 122577888887 999433 222
Q ss_pred Hhh---hc--C--CCCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhccCCCC-CccChHHHHHHHH
Q 006588 237 GGL---MS--S--KKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPKD-YNIEKDKLITLWM 308 (639)
Q Consensus 237 ~~~---l~--~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~-~~i~~~~l~~~w~ 308 (639)
... .. + ....+.+...+... ....+..++..++...+..+..++.+..+ ..+...++.....
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 221 11 1 12344444444321 12246667889999888887777743222 2344443333221
Q ss_pred --HcCCCCCcCcccHHHHHHHHHHHHHhccCcccccc
Q 006588 309 --AQGYLSAEEDEELETIGEEYFGILASRSFFQEFEK 343 (639)
Q Consensus 309 --~~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~ 343 (639)
++..- .. .........+++.|...|++.....
T Consensus 320 ~~~~~~~--~~-~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 320 ELTSTLG--LE-HVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHHHHTT--CC-CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHhcC--CC-CCCHHHHHHHHHHHHhCCCeEEEee
Confidence 11110 11 1123455678999999999987543
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=3.2e-16 Score=159.94 Aligned_cols=179 Identities=17% Similarity=0.165 Sum_probs=111.6
Q ss_pred CCceEEEEEEecccCc--ccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCC-CCCC-ccccccc
Q 006588 388 DEKVRHLMLIIGKEST--FPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSL-YLPS-EIPRNIK 463 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~p~~~~ 463 (639)
..+++.+.+.++.+.. ++..+..+++|+.|.+.+|.+ .+..+.. +..+++|++|++++| .+.+ .++..+.
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-----~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-----SDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-----CHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc-----CHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 4567777777766542 556667777777776666553 4444444 566777777777777 4333 2555566
Q ss_pred ccCCCcEEeccCC-CCcc--cchhhhcCC-CccEEecCCCC--Cc-cccchhhhhcccCceeecCCCC-ccccccccCCC
Q 006588 464 KLIHLRYLNLSGQ-KIEK--LPEALCELY-NLEKLDICSCS--CL-KELPEGIGKLINMKYLLNRDTD-SVRYMPVGIAR 535 (639)
Q Consensus 464 ~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~--~~-~~lp~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~ 535 (639)
++++|+.|++++| .++. ++..+..++ +|++|++++|. +. ..+|..+..+++|++|++++|. +....+..+..
T Consensus 166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 7777777777777 6763 566667777 77777777773 22 4556666677777777777776 44455666666
Q ss_pred CcCCccccceEecCCCccCCCccCCcccccCCCcCCceee
Q 006588 536 LKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGI 575 (639)
Q Consensus 536 l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 575 (639)
+++|++|++..+. .+.......+..+++|+.|++.+|
T Consensus 246 l~~L~~L~l~~~~---~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCY---DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCT---TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCC---CCCHHHHHHHhcCCCCCEEeccCc
Confidence 7777777632221 111111124566777777777666
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=2.5e-16 Score=168.79 Aligned_cols=185 Identities=15% Similarity=0.078 Sum_probs=139.1
Q ss_pred EecccCcccccccCC----CCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEe
Q 006588 397 IIGKESTFPISTCRT----KRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLN 472 (639)
Q Consensus 397 ~~~~~~~~~~~~~~~----~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 472 (639)
.......+|..+..+ ++|+.|++.+|.+. .+++..+..+++|++|++++|.+.+..| ++.+++|++|+
T Consensus 15 ~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 86 (487)
T 3oja_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLS------QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (487)
T ss_dssp ESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCC------CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEE
T ss_pred ccCchhhhHHHHHHhcccCCCccEEEeeCCcCC------CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEE
Confidence 333334455555444 48999988888753 3444448899999999999999665555 88999999999
Q ss_pred ccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCc
Q 006588 473 LSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGC 552 (639)
Q Consensus 473 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~ 552 (639)
+++|.++.+|. .++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..|..++.+++|++|+ .++|.
T Consensus 87 Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~----Ls~N~ 155 (487)
T 3oja_A 87 LNNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD----LKLNE 155 (487)
T ss_dssp CCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE----CTTSC
T ss_pred ecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE----CCCCC
Confidence 99999997764 38999999999995554433 468999999999998888888899999999998 56666
Q ss_pred cCCCccCCcc-cccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 553 LDGRKACRLE-SLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 553 ~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
+.+..|..+. .+++|+.|++++|.+.+. +. ...+++|+.|+|++|.++
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~--------~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG--------QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC--------CCCCTTCCEEECCSSCCC
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccc-cc--------cccCCCCCEEECCCCCCC
Confidence 7777777775 788999999988875432 11 223556666666666544
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=7.9e-16 Score=148.85 Aligned_cols=192 Identities=14% Similarity=0.062 Sum_probs=145.9
Q ss_pred EEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCC-CCCcccccccccCCCcEEecc
Q 006588 396 LIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLY-LPSEIPRNIKKLIHLRYLNLS 474 (639)
Q Consensus 396 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~ 474 (639)
+....+..+|. +. ++|+.|.+.+|.+ ..+++..+..+++|++|++++|. +....+..|.++++|++|+++
T Consensus 18 v~c~~l~~ip~-~~--~~l~~L~l~~n~l------~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 18 VTCKDIQRIPS-LP--PSTQTLKLIETHL------RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp EEECSCSSCCC-CC--TTCCEEEEESCCC------SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred eEccCccccCC-CC--CcccEEEEeCCcc------eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence 34444677776 43 4899999999884 35566558889999999999997 444445578999999999999
Q ss_pred C-CCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCc---eeecCCC-CccccccccCCCCcCCc-cccceEe
Q 006588 475 G-QKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMK---YLLNRDT-DSVRYMPVGIARLKSLR-TLEEVRV 547 (639)
Q Consensus 475 ~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~---~L~l~~n-~~~~~~p~~~~~l~~L~-~L~~~~~ 547 (639)
+ |.++.+|. .+..+++|++|++++|. ...+|. +..+++|+ +|++++| .+....+..|..+++|+ +|+
T Consensus 89 ~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~---- 162 (239)
T 2xwt_C 89 NTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK---- 162 (239)
T ss_dssp EETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE----
T ss_pred CCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE----
Confidence 9 99998874 67899999999999998 455887 88889998 9999999 65444445588899999 887
Q ss_pred cCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccc-cCcceEEEEeccCC
Q 006588 548 SGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKK-KYLFSLTLKFDEKE 609 (639)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 609 (639)
...+.+. .+|......++|+.|++.+|.....++. ..+..+ ++|+.|+|+.|.+.
T Consensus 163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~------~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK------DAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECT------TTTTTCSBCCSEEECTTCCCC
T ss_pred cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCH------HHhhccccCCcEEECCCCccc
Confidence 4444454 4455443348999999999952223322 246777 89999999988754
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=160.71 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=121.8
Q ss_pred hhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcc---cchhhhcCCCccEEecCCCCCccccchh-hhhccc
Q 006588 439 RELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEK---LPEALCELYNLEKLDICSCSCLKELPEG-IGKLIN 514 (639)
Q Consensus 439 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 514 (639)
..+++|++|++++|.+.+..|..++++++|++|++++|.++. +|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567889999999998777788888888999999999998884 4567888899999999988866657765 677888
Q ss_pred CceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhccccccc
Q 006588 515 MKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDK 594 (639)
Q Consensus 515 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 594 (639)
|++|++++|.+.+..|..+. ++|++|+ ..+|.+. .+|..+..+++|+.|++++|.+. .+|.. .+..
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~----Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~------~~~~ 466 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLD----LHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG------IFDR 466 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEE----CCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTT------TTTT
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEE----CCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHH------Hhcc
Confidence 99999999987777776653 6788877 4444444 57777778899999999888764 34431 3667
Q ss_pred ccCcceEEEEeccCC
Q 006588 595 KKYLFSLTLKFDEKE 609 (639)
Q Consensus 595 ~~~L~~L~l~~~~~~ 609 (639)
+++|+.|+++.|.+.
T Consensus 467 l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CCcccEEECcCCCCc
Confidence 888999999888754
No 82
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=6.9e-14 Score=145.71 Aligned_cols=300 Identities=13% Similarity=0.046 Sum_probs=184.9
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-CCceEEEEeCCCCchHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-FDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 103 (639)
.+..++||+++++++.+++.....+..+..+.++|+|++|+|||||++.+++. .... -..++|+++....+...++.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHH
Confidence 34789999999999999997642210112348999999999999999999873 3333 24577888888888889999
Q ss_pred HHHHHccCCCCC-cccHHHHHHHHHHhc--CCceEEEEEeCCCCCCccCchhhhHhhhcCC----CCcEEEEEccchHHH
Q 006588 104 AMLEALTGSTSN-LDALQSLLISIDESI--AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL----HGSKILITTRNESIA 176 (639)
Q Consensus 104 ~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~----~~~~ilvTsr~~~~~ 176 (639)
.++..++..... .....+....+...+ .+++.+||||+++..+......+...+.... .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 999988654322 223444444444443 3568999999998875444555555554322 366788887765332
Q ss_pred hhhc-------ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHc---------CCchhHHHHHHhhh
Q 006588 177 SMMR-------STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKC---------KGLPLAAKTMGGLM 240 (639)
Q Consensus 177 ~~~~-------~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l 240 (639)
.... ....+.+.+++.++..+++...+....... .-..+.++.+++.+ .|.|..+..+....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 2211 123799999999999999988764211000 01123467888888 79886544443322
Q ss_pred c------CC--CCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhccCC---CCCccChHHHHHHHHH
Q 006588 241 S------SK--KTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFP---KDYNIEKDKLITLWMA 309 (639)
Q Consensus 241 ~------~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~---~~~~i~~~~l~~~w~~ 309 (639)
. +. ...+........ .....+...+..|+...+.++..++.+. .+..+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~----------~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKE----------VLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHH----------HSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHH----------HhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 11 222222222211 0122345567788888888888777653 2213445555444322
Q ss_pred ----cCCCCCcCcccHHHHHHHHHHHHHhccCcccccc
Q 006588 310 ----QGYLSAEEDEELETIGEEYFGILASRSFFQEFEK 343 (639)
Q Consensus 310 ----~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~~ 343 (639)
.|.. .. .......++..|.+.|+|.....
T Consensus 321 ~~~~~~~~----~~-~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGER----PR-VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTCC----CC-CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCCC----CC-CHHHHHHHHHHHHhCCCeEEeee
Confidence 1211 11 12345677999999999987654
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.59 E-value=1.3e-14 Score=155.03 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=113.1
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhc
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCE 487 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 487 (639)
+.++++|+.|++.+|.+.. ++. +..+++|++|++++|.+.+..| ++.+++|+.|++++|.++.++ .+..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~------~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~ 241 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSD------ISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLAS 241 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC------CGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGG
T ss_pred hccCCCCCEEECcCCcCCC------Chh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhc
Confidence 5666666666666665421 111 5667777777777777544433 566777777777777777664 5677
Q ss_pred CCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCC
Q 006588 488 LYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNL 567 (639)
Q Consensus 488 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L 567 (639)
+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.+ +|. +..+++|+.|+ ..++.+.+..+ +..+++|
T Consensus 242 l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~----L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 242 LTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLE----LNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp CTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEE----CCSSCCSCCGG--GGGCTTC
T ss_pred CCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEE----cCCCcccCchh--hcCCCCC
Confidence 7788888888777433 343 6777788888888876544 333 66677777776 33344444333 6778888
Q ss_pred CcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 568 EHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 568 ~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
+.|++++|.+.+..+ +..+++|+.|+++.|.+.
T Consensus 312 ~~L~L~~n~l~~~~~---------~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 312 TYLTLYFNNISDISP---------VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp SEEECCSSCCSCCGG---------GGGCTTCCEEECCSSCCC
T ss_pred CEEECcCCcCCCchh---------hccCccCCEeECCCCccC
Confidence 888888886543221 456788888888888755
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=2.8e-16 Score=163.63 Aligned_cols=211 Identities=16% Similarity=0.097 Sum_probs=106.8
Q ss_pred CceEEEEEEecccCc-----ccccccCCCCccEEEeeccccCCCCchhhhHHHH------HhhCCceeEEecCCCCCCC-
Q 006588 389 EKVRHLMLIIGKEST-----FPISTCRTKRIRSLLIECRRFDHSSLNGEILEEL------FRELTSLRALDFPSLYLPS- 456 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~------~~~l~~L~~L~l~~n~~~~- 456 (639)
..++.+.+.++.+.. ++..+..+++|+.|.+.+|.+. .+.+.+|..+ +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--ccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 345566665554432 2334556666666666554321 2233333332 3456666666666666544
Q ss_pred ---cccccccccCCCcEEeccCCCCcc-----cchhhhcC---------CCccEEecCCCCCc-cccc---hhhhhcccC
Q 006588 457 ---EIPRNIKKLIHLRYLNLSGQKIEK-----LPEALCEL---------YNLEKLDICSCSCL-KELP---EGIGKLINM 515 (639)
Q Consensus 457 ---~~p~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~~~-~~lp---~~~~~l~~L 515 (639)
.+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+. ..+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 245556666666666666666651 22223333 66666666666643 2333 244556666
Q ss_pred ceeecCCCCccc-----cccccCCCCcCCccccceEecCCCccC----CCccCCcccccCCCcCCceeeeCcCCCCChhh
Q 006588 516 KYLLNRDTDSVR-----YMPVGIARLKSLRTLEEVRVSGRGCLD----GRKACRLESLKNLEHLQICGIRGLGDVSDVGE 586 (639)
Q Consensus 516 ~~L~l~~n~~~~-----~~p~~~~~l~~L~~L~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 586 (639)
++|++++|.+.. ..|..+..+++|++|+ ...|.++ ..+|..+..+++|+.|++++|.+... ...
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~----Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~---~~~ 262 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD----LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR---GAA 262 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE----CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH---HHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE----CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh---hHH
Confidence 666666665431 2333455556666665 2233232 33455556666666666666653211 000
Q ss_pred hccccc--ccccCcceEEEEeccC
Q 006588 587 AKRLEL--DKKKYLFSLTLKFDEK 608 (639)
Q Consensus 587 ~~~~~l--~~~~~L~~L~l~~~~~ 608 (639)
.+...+ ..+++|+.|+|++|.+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHHhhccCCCeEEEECcCCcC
Confidence 111122 2256666666666653
No 85
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=7e-14 Score=145.41 Aligned_cols=297 Identities=13% Similarity=0.003 Sum_probs=181.5
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc------CCceEEEEeCCCC-c
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ------FDKILWVCVSETF-D 97 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~-~ 97 (639)
.+..|+||+++++++.+++..... ....+.+.|+|++|+|||++|+.+++....... ...++|+++.... +
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 347899999999999988875432 335679999999999999999999884322211 3467888887776 8
Q ss_pred hHHHHHHHHHHccCCCC--CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhh-hHhhhcCCCCcEEEEEccchH
Q 006588 98 EFRIAKAMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPF-YHCLKKGLHGSKILITTRNES 174 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l-~~~l~~~~~~~~ilvTsr~~~ 174 (639)
...++..++..+..... ...........+...+..++.+|||||++.......... ...+.....+..+|+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 88888999888843221 122345556666666676666999999977543321222 333333226778888988653
Q ss_pred HH----hhh--cccceEECCCCCHHHHHHHHHHHhhC-CCCchhhhHHHHHHHHHHHHcC---Cchh-HHHHHHhhh--c
Q 006588 175 IA----SMM--RSTDVISIKELAEEECWALFKQLAFF-GRSTEECEKLEQIGQRIARKCK---GLPL-AAKTMGGLM--S 241 (639)
Q Consensus 175 ~~----~~~--~~~~~~~l~~l~~~ea~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~ 241 (639)
.. ... .....+.+.+++.++..+++...+.. .....-. .+.++.+++.++ |.|. ++..+.... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 11 111 11238999999999999999987642 1111111 123567777777 9887 333332221 1
Q ss_pred -C--CCCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhccCCCC-CccChHHHHHHHHHcCCCCCcC
Q 006588 242 -S--KKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPKD-YNIEKDKLITLWMAQGYLSAEE 317 (639)
Q Consensus 242 -~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~-~~i~~~~l~~~w~~~g~~~~~~ 317 (639)
+ ....+.+...+... ....+..+++.|+..++.++..++. ... ..+. .......-..| ..
T Consensus 253 ~~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g----~~ 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK----QK 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT----CC
T ss_pred cCCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC----CC
Confidence 1 23455555544421 1134667788999888888877776 211 1111 11111111112 11
Q ss_pred cccHHHHHHHHHHHHHhccCcccccc
Q 006588 318 DEELETIGEEYFGILASRSFFQEFEK 343 (639)
Q Consensus 318 ~~~~~~~~~~~l~~L~~~sli~~~~~ 343 (639)
.. .......++..|...|+|.....
T Consensus 317 ~~-~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 317 PL-SYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CC-CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CC-CHHHHHHHHHHHHhCCCEEEEec
Confidence 11 22345677999999999987544
No 86
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=7.9e-15 Score=155.64 Aligned_cols=197 Identities=15% Similarity=0.094 Sum_probs=113.6
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+.++.+..++ +..+++|+.|.+..|.. .+.++ +..+++|+.|++++|.+.+ +| ++.+++|
T Consensus 127 ~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~-----~~~~~---~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L 193 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK-----ITKLD---VTPQTQLTTLDCSFNKITE-LD--VSQNKLL 193 (457)
T ss_dssp TTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSC-----CCCCC---CTTCTTCCEEECCSSCCCC-CC--CTTCTTC
T ss_pred CcCCEEECCCCccceec--cccCCcCCEEECCCCCc-----ccccc---cccCCcCCEEECCCCccce-ec--cccCCCC
Confidence 44555555555554442 45555555555444421 22221 4556666667776666433 44 5666677
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCc-------CCcc
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLK-------SLRT 541 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-------~L~~ 541 (639)
+.|++++|.++.++ ++.+++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+..+..+..+. +|+.
T Consensus 194 ~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 194 NRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 77777777776653 6677777777777777443 55 66777777777777765543322232222 2333
Q ss_pred ccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCCh-hhhcccccccccCcceEEEEeccCC
Q 006588 542 LEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDV-GEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 542 L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
|+ ..++.+.+.+| ++.+++|+.|++++|...+.++.. .......+.++++|+.|+++.|.++
T Consensus 269 L~----l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 269 ID----LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp CC----CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred EE----CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 33 22333444444 456788888888888765554421 1122234667778888888877755
No 87
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=7.5e-15 Score=138.65 Aligned_cols=171 Identities=21% Similarity=0.158 Sum_probs=106.9
Q ss_pred EEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEec
Q 006588 394 LMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNL 473 (639)
Q Consensus 394 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 473 (639)
+....+....+|..+ .++|+.|.+.+|.+. .+++..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 12 v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI--PAQTTYLDLETNSLK------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EECCSSCCSSCCSCC--CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EEecCCCccCCCCCC--CCCCcEEEcCCCccC------cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 344444455555443 347777776666642 334444566777777777777755444455667777777777
Q ss_pred cCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCc
Q 006588 474 SGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGC 552 (639)
Q Consensus 474 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~ 552 (639)
++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+ ...|.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~----l~~N~ 159 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW----LHDNP 159 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE----CCSCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE----ecCCC
Confidence 77777766654 56777777777777774433333456777777777777765544334466677777766 33331
Q ss_pred cCCCccCCcccccCCCcCCceeeeCcCCCCC
Q 006588 553 LDGRKACRLESLKNLEHLQICGIRGLGDVSD 583 (639)
Q Consensus 553 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 583 (639)
..+.+++|+.|++..|.+.+.+|.
T Consensus 160 -------~~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 160 -------WDCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp -------BCCCTTTTHHHHHHHHHCTTTBBC
T ss_pred -------eecCCCCHHHHHHHHHhCCceeec
Confidence 124556777777777777666665
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.8e-15 Score=152.49 Aligned_cols=216 Identities=16% Similarity=0.111 Sum_probs=154.2
Q ss_pred ceEEEEEEecccCc--cc--ccccCCCCccEEEeeccccCCCCchhhhHHHHH-hhCCceeEEecCCCCCCCccc----c
Q 006588 390 KVRHLMLIIGKEST--FP--ISTCRTKRIRSLLIECRRFDHSSLNGEILEELF-RELTSLRALDFPSLYLPSEIP----R 460 (639)
Q Consensus 390 ~~~~l~l~~~~~~~--~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p----~ 460 (639)
.++.+.+....+.. +. ..+..+++|+.|++.+|.+ .+..|..++ ..+++|++|++++|.+.+..+ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-----TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-----BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-----ccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 45666666654421 11 1123356799998888875 444444422 779999999999999776544 3
Q ss_pred cccccCCCcEEeccCCCCcccc-hhhhcCCCccEEecCCCCCccc--cch--hhhhcccCceeecCCCCcccccccc---
Q 006588 461 NIKKLIHLRYLNLSGQKIEKLP-EALCELYNLEKLDICSCSCLKE--LPE--GIGKLINMKYLLNRDTDSVRYMPVG--- 532 (639)
Q Consensus 461 ~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--lp~--~~~~l~~L~~L~l~~n~~~~~~p~~--- 532 (639)
.+..+++|++|++++|.++.++ ..++.+++|++|++++|.+.+. ++. .+..+++|++|++++|.+ ..+|..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~ 218 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAA 218 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHH
Confidence 4457899999999999999665 5788999999999999986542 332 246889999999999975 334432
Q ss_pred -CCCCcCCccccceEecCCCccCCCccCCcccc---cCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccC
Q 006588 533 -IARLKSLRTLEEVRVSGRGCLDGRKACRLESL---KNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEK 608 (639)
Q Consensus 533 -~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 608 (639)
++.+++|++|+ .+.|.+.+..|..+..+ ++|+.|++++|.+. .+|. .+ .++|+.|+|++|.+
T Consensus 219 l~~~l~~L~~L~----Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-------~~--~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 219 LAAAGVQPHSLD----LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-------GL--PAKLRVLDLSSNRL 284 (310)
T ss_dssp HHHHTCCCSSEE----CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-------CC--CSCCSCEECCSCCC
T ss_pred HHhcCCCCCEEE----CCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-------hh--cCCCCEEECCCCcC
Confidence 46678899988 66667777778777776 69999999999875 4443 12 27999999999986
Q ss_pred CcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 609 EKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
+. +.....+++|+.|+|
T Consensus 285 ~~--------------~~~~~~l~~L~~L~L 301 (310)
T 4glp_A 285 NR--------------APQPDELPEVDNLTL 301 (310)
T ss_dssp CS--------------CCCTTSCCCCSCEEC
T ss_pred CC--------------CchhhhCCCccEEEC
Confidence 52 122455688888765
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.2e-14 Score=144.64 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=123.6
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
+.++.+.+.++.+..++ .+..+++|+.|++.+|.+. .+++ +..+++|++|++++|.+. .+|. +..+++|
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~------~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L 114 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT------DIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKL 114 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC------CCGG--GTTCTTCCEEECCSSCCC-CGGG-GTTCTTC
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccC------CCcc--cccCCCCCEEECCCCcCC-CChh-hccCCCC
Confidence 56788888888877775 4788888888888877753 2333 678888888888888844 3444 7788888
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
++|++++|.++.++ .+..+++|+.|++++|.+ ..+ ..+..+++|++|++++|.+.+. +. +..+++|++|+ .
T Consensus 115 ~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~----L 185 (291)
T 1h6t_A 115 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLY----L 185 (291)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEE----C
T ss_pred CEEECCCCcCCCCh-hhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEE----C
Confidence 88888888888774 678888888888888884 444 4588888888888888875443 33 77778888877 3
Q ss_pred CCCccCCCccCCcccccCCCcCCceeeeCc
Q 006588 549 GRGCLDGRKACRLESLKNLEHLQICGIRGL 578 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 578 (639)
.+|.+.. ++ .+..+++|+.|++++|.+.
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 3333333 23 3778888888888888754
No 90
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.2e-15 Score=168.84 Aligned_cols=184 Identities=19% Similarity=0.170 Sum_probs=90.0
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
.+..+.+.++.....+..+.....|+.+.+....+..+.+. +++..+..+..|+.|+|++|.+ ..+|..+.++++|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQI-FNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCS
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCC-CCCChhhcCCCCCC
Confidence 45666666666655555555555555554444433333222 3455566777777777777774 36666666777777
Q ss_pred EEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecC
Q 006588 470 YLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSG 549 (639)
Q Consensus 470 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~ 549 (639)
+|+|++|.|+.+|..++.+++|++|+|++|.+. .+|..++.+++|++|++++|.+ ..+|..|+.+++|++|+ ..
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~----L~ 324 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLG----VE 324 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEE----CT
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEe----CC
Confidence 777777777777777777777777777777744 6677777777777777777753 46677777777777776 45
Q ss_pred CCccCCCccCCcccccC-CCcCCceeeeCcCCCC
Q 006588 550 RGCLDGRKACRLESLKN-LEHLQICGIRGLGDVS 582 (639)
Q Consensus 550 ~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~ 582 (639)
+|.+.+.+|..+..+.. +..|++.+|.+.+.+|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 55566666655544321 1224455555544443
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=2.8e-15 Score=151.48 Aligned_cols=209 Identities=14% Similarity=0.103 Sum_probs=158.5
Q ss_pred CceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 389 EKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
.+++.+.+.++.+..++ ..+.++++|+.|++.+|.+ .+. ++ +..+++|++|++++|.+. .++ .+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~~-~~--~~~l~~L~~L~Ls~n~l~-~l~----~~~~ 100 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----YET-LD--LESLSTLRTLDLNNNYVQ-ELL----VGPS 100 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-----EEE-EE--ETTCTTCCEEECCSSEEE-EEE----ECTT
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-----Ccc-hh--hhhcCCCCEEECcCCccc-ccc----CCCC
Confidence 57899999999887765 6788999999998887775 322 22 778999999999999843 333 3478
Q ss_pred CcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccC-CCCcCCccccceE
Q 006588 468 LRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGI-ARLKSLRTLEEVR 546 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~~~~ 546 (639)
|++|++++|.++.++.. .+++|+.|++++|.+....|..+..+++|++|++++|.+.+..|..+ ..+++|++|+
T Consensus 101 L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~--- 175 (317)
T 3o53_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN--- 175 (317)
T ss_dssp CCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE---
T ss_pred cCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE---
Confidence 99999999999877643 47889999999999666556678899999999999998777666665 4678899888
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhh
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLE 626 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 626 (639)
...+.+... + ....+++|+.|++++|.+.+..+ .+..+++|+.|+|++|.+. .+..
T Consensus 176 -L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~--------~~~~l~~L~~L~L~~N~l~-------------~l~~ 231 (317)
T 3o53_A 176 -LQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP--------EFQSAAGVTWISLRNNKLV-------------LIEK 231 (317)
T ss_dssp -CTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG--------GGGGGTTCSEEECTTSCCC-------------EECT
T ss_pred -CCCCcCccc-c-cccccccCCEEECCCCcCCcchh--------hhcccCcccEEECcCCccc-------------chhh
Confidence 444444333 2 23358999999999998643211 2677899999999998754 2345
Q ss_pred cCCCCCCCcceeC
Q 006588 627 ALRPPPYLKELAI 639 (639)
Q Consensus 627 ~l~~~~~L~~L~l 639 (639)
.+..+++|+.|+|
T Consensus 232 ~~~~l~~L~~L~l 244 (317)
T 3o53_A 232 ALRFSQNLEHFDL 244 (317)
T ss_dssp TCCCCTTCCEEEC
T ss_pred HhhcCCCCCEEEc
Confidence 5677888988875
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.1e-14 Score=136.04 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=79.8
Q ss_pred cCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcc-cchhhhc
Q 006588 409 CRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEK-LPEALCE 487 (639)
Q Consensus 409 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~-lp~~i~~ 487 (639)
.++++|+.|.+.+|.+. .++ . +..+++|++|++++|. ...+ ..+..+++|++|++++|.++. .|..++.
T Consensus 41 ~~l~~L~~L~l~~n~i~------~l~-~-l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT------DLT-G-IEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS------CCT-T-GGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCcc------ChH-H-HhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 44556666655555532 222 1 4555666666666664 2222 245555666666666666552 4555555
Q ss_pred CCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCC
Q 006588 488 LYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNL 567 (639)
Q Consensus 488 l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L 567 (639)
+++|++|++++|.+....|..+..+++|++|++++|..+..+| .+..+++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----------------------------~l~~l~~L 161 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-----------------------------PLKTLPEL 161 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----------------------------GGGGCSSC
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-----------------------------hhcCCCCC
Confidence 6666666666665444455555556666666666554233333 34455555
Q ss_pred CcCCceeeeCcCCCCChhhhcccccccccCcceEEEEecc
Q 006588 568 EHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDE 607 (639)
Q Consensus 568 ~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 607 (639)
+.|++++|.+.. ++ .+..+++|+.|+++.|.
T Consensus 162 ~~L~l~~n~i~~-~~--------~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR--------GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEECTTBCCCC-CT--------TGGGCSSCCEEEECBC-
T ss_pred CEEECCCCCCcC-hH--------HhccCCCCCEEEeeCcc
Confidence 566665555322 11 24556667777776665
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4.7e-15 Score=162.10 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=127.1
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
...++.|.+.++.+..++ .+..+++|+.|.+++|.+. .+++ +..+++|+.|+|++|.+. .+| .+..+++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~------~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~ 110 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT------DIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKK 110 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCC------CCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCC------CChh--hccCCCCCEEECcCCCCC-CCh-hhccCCC
Confidence 366777888888877776 5788889999988777753 2333 678888999999988854 344 5788888
Q ss_pred CcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEe
Q 006588 468 LRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRV 547 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~ 547 (639)
|+.|+|++|.++.++ .+..+++|+.|+|++|.+. .+ ..+..+++|+.|++++|.+.+..| +..+++|+.|+
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~---- 181 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY---- 181 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE----
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-Cc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE----
Confidence 999999999888764 5888888999999888844 44 458888889999998887655444 77788888887
Q ss_pred cCCCccCCCccCCcccccCCCcCCceeeeCcC
Q 006588 548 SGRGCLDGRKACRLESLKNLEHLQICGIRGLG 579 (639)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 579 (639)
..+|.+... ..+..+++|+.|++++|.+..
T Consensus 182 Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 182 LSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 333434432 357888888888888887644
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=2.5e-16 Score=160.85 Aligned_cols=203 Identities=17% Similarity=0.147 Sum_probs=162.8
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+.++.+...+..+..+++|+.|++.+|.+ .+...+..+..+++|++|++++|.+....+..++.+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l-----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI-----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEE-----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCc-----CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 678899999888877776788899999998887764 444344558899999999999999777788889999999
Q ss_pred cEEeccCC-CCc--ccchhhhcCCCccEEecCCC-CCccc-cchhhhhcc-cCceeecCCCC--cc-ccccccCCCCcCC
Q 006588 469 RYLNLSGQ-KIE--KLPEALCELYNLEKLDICSC-SCLKE-LPEGIGKLI-NMKYLLNRDTD--SV-RYMPVGIARLKSL 539 (639)
Q Consensus 469 ~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~-~~~~~-lp~~~~~l~-~L~~L~l~~n~--~~-~~~p~~~~~l~~L 539 (639)
++|++++| .++ .+|..+..+++|+.|++++| .+... +|..+..++ +|++|++++|. +. ..+|..+..+++|
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 99999999 688 47777899999999999999 75443 677789999 99999999994 33 5567777788999
Q ss_pred ccccceEecCCCc-cCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 540 RTLEEVRVSGRGC-LDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 540 ~~L~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
++|+ ...+. ++...+..+..+++|+.|++++|.. +. ......+.++++|+.|+|+.|
T Consensus 225 ~~L~----l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~---~~---~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 225 VHLD----LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD---II---PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SEEE----CTTCTTCCGGGGGGGGGCTTCCEEECTTCTT---CC---GGGGGGGGGCTTCCEEECTTS
T ss_pred CEEe----CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC---CC---HHHHHHHhcCCCCCEEeccCc
Confidence 9998 33333 4556677889999999999988852 11 111134678999999999977
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=2.6e-14 Score=134.94 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=134.4
Q ss_pred ccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
....+.++.+.+.++.+..++. .+..+++|+.|++.+|.+. .+++..+..+++|++|++++|.+.+..+..+.
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ------SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC------ccChhhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 3455789999999999988775 4689999999999888753 45555578899999999999997665566688
Q ss_pred ccCCCcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccc
Q 006588 464 KLIHLRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTL 542 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 542 (639)
++++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.. .+++|+.|
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L 170 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL 170 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHH
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHH
Confidence 999999999999999988765 6899999999999998554444447889999999999997543 35577887
Q ss_pred cceEecCCCccCCCccCCcccccC
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKN 566 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~ 566 (639)
. ...+.+.|.+|..++.++.
T Consensus 171 ~----~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 171 S----EWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp H----HHHHHCTTTBBCTTSSBCT
T ss_pred H----HHHHhCCceeeccCccccC
Confidence 7 4556678889998887764
No 96
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=2.6e-13 Score=141.14 Aligned_cols=298 Identities=13% Similarity=0.060 Sum_probs=175.7
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc---CCceEEEEeCCCCchH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ---FDKILWVCVSETFDEF 99 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~~~~ 99 (639)
...+..|+||+++++++.+++..... .+..+.++|+|++|+||||||+.+++. .... -..++|+++....+..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHH
Confidence 34457899999999999999875422 235678999999999999999999884 4333 3467788887777777
Q ss_pred HHHHHHHHHccCCCCC-cccHHHHHHHHHHhcC--CceEEEEEeCCCCCC----ccCchhhhHhhhc-CCCCcEEEEEcc
Q 006588 100 RIAKAMLEALTGSTSN-LDALQSLLISIDESIA--GKRFLLVLDDVWDGD----YIKWEPFYHCLKK-GLHGSKILITTR 171 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlvlDd~~~~~----~~~~~~l~~~l~~-~~~~~~ilvTsr 171 (639)
.++..++..++..... .....+....+...+. +++.+||||+++... ...+..+...+.. ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 8888888877543321 1224444444444433 458999999997642 1223334433432 234556778877
Q ss_pred chHHHhhh-----cc--cceEECCCCCHHHHHHHHHHHhhCCC-CchhhhHHHHHHHHHHHHcC---CchhHHHHHHhhh
Q 006588 172 NESIASMM-----RS--TDVISIKELAEEECWALFKQLAFFGR-STEECEKLEQIGQRIARKCK---GLPLAAKTMGGLM 240 (639)
Q Consensus 172 ~~~~~~~~-----~~--~~~~~l~~l~~~ea~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l 240 (639)
........ .. ...+.+.+++.++..+++...+.... ...-. .+..+.+++.++ |.|..+..+....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 65322111 11 24899999999999999987653111 01111 223566777777 9998443332221
Q ss_pred c------C--CCCHHHHHHHHcCcccchhhccccchhhHHhhhhCCchhhHHHHhhhccCCC-C-CccChHHHHHHH--H
Q 006588 241 S------S--KKTEEEWKRILNSDLWKVEEIEKGFLTPLWLSYNDLPSRVKRCFSYCAVFPK-D-YNIEKDKLITLW--M 308 (639)
Q Consensus 241 ~------~--~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~-~-~~i~~~~l~~~w--~ 308 (639)
. + ....+.....+... ....+...+..++...+.++..++.+.+ + ..+....+.... +
T Consensus 249 ~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~ 318 (386)
T 2qby_A 249 GEIAERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNI 318 (386)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHH
Confidence 1 1 12334444333211 1234666778898888888877775322 1 123333332211 1
Q ss_pred H--cCCCCCcCcccHHHHHHHHHHHHHhccCccccc
Q 006588 309 A--QGYLSAEEDEELETIGEEYFGILASRSFFQEFE 342 (639)
Q Consensus 309 ~--~g~~~~~~~~~~~~~~~~~l~~L~~~sli~~~~ 342 (639)
+ .|. . .........+++.|...|+|....
T Consensus 319 ~~~~g~-~----~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 319 CKKLGV-E----AVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHTC-C----CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHhcCC-C----CCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1 121 1 111234566799999999997653
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=1.4e-15 Score=158.33 Aligned_cols=222 Identities=15% Similarity=0.119 Sum_probs=156.6
Q ss_pred ecccCcccccccCCCCccEEEeeccccCCCCchhhhHH---HHHhhCCceeEEecCCCCCC---Ccccccc-------cc
Q 006588 398 IGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILE---ELFRELTSLRALDFPSLYLP---SEIPRNI-------KK 464 (639)
Q Consensus 398 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~~~---~~~p~~~-------~~ 464 (639)
......++..+..+++|+.|.+.+|.+ ....+. ..+..+++|++|++++|.+. +.+|..+ ..
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~ 92 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEE-----CHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCC-----CHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence 334456777888899999998888875 333222 22568999999999997632 3445444 68
Q ss_pred cCCCcEEeccCCCCcc-----cchhhhcCCCccEEecCCCCCccc----cchhhhhc---------ccCceeecCCCCcc
Q 006588 465 LIHLRYLNLSGQKIEK-----LPEALCELYNLEKLDICSCSCLKE----LPEGIGKL---------INMKYLLNRDTDSV 526 (639)
Q Consensus 465 l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~----lp~~~~~l---------~~L~~L~l~~n~~~ 526 (639)
+++|++|+|++|.++. +|..+..+++|++|+|++|.+... ++..+..+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 8999999999999985 778899999999999999996433 33334444 89999999999875
Q ss_pred -cccc---ccCCCCcCCccccceEecCCCccC--C---CccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccC
Q 006588 527 -RYMP---VGIARLKSLRTLEEVRVSGRGCLD--G---RKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKY 597 (639)
Q Consensus 527 -~~~p---~~~~~l~~L~~L~~~~~~~~~~~~--~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~ 597 (639)
..+| ..+..+++|++|+ ..++.+. + ..+..+..+++|+.|++++|.+... ....+...+..+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~----L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVK----MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---GSSALAIALKSWPN 245 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEE----CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---HHHHHHHHGGGCTT
T ss_pred cHHHHHHHHHHHhCCCcCEEE----CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---HHHHHHHHHccCCC
Confidence 3455 3566778888887 3333333 1 2344788999999999999985210 01223345778899
Q ss_pred cceEEEEeccCCcCCCCCCCcccHHHHhhcC--CCCCCCcceeC
Q 006588 598 LFSLTLKFDEKEKRGGERRKNEDDQLLLEAL--RPPPYLKELAI 639 (639)
Q Consensus 598 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l 639 (639)
|+.|+|++|.+.+ .....+...+ .++++|+.|+|
T Consensus 246 L~~L~L~~n~i~~--------~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 246 LRELGLNDCLLSA--------RGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp CCEEECTTCCCCH--------HHHHHHHHHHHTCSSCCCCEEEC
T ss_pred cCEEECCCCCCch--------hhHHHHHHHHhhccCCCeEEEEC
Confidence 9999999997652 1122244555 33677777764
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=2.7e-15 Score=154.71 Aligned_cols=234 Identities=16% Similarity=0.158 Sum_probs=118.3
Q ss_pred CceEEEEEEecccCccc-----ccccCCC-CccEEEeeccccCCCCchhhhHHH---HHhhC-CceeEEecCCCCCCCcc
Q 006588 389 EKVRHLMLIIGKESTFP-----ISTCRTK-RIRSLLIECRRFDHSSLNGEILEE---LFREL-TSLRALDFPSLYLPSEI 458 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~-----~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~---~~~~l-~~L~~L~l~~n~~~~~~ 458 (639)
..++.+.+.++.+...+ ..+..++ +|+.|++++|.+. +..+.. .+... ++|+.|++++|.+....
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-----FKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-----HHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 45667777776665544 4455666 6777766666542 211221 12222 67777777777754444
Q ss_pred cccccc----c-CCCcEEeccCCCCcccch-h----hhcC-CCccEEecCCCCCcc----ccchhhhhcc-cCceeecCC
Q 006588 459 PRNIKK----L-IHLRYLNLSGQKIEKLPE-A----LCEL-YNLEKLDICSCSCLK----ELPEGIGKLI-NMKYLLNRD 522 (639)
Q Consensus 459 p~~~~~----l-~~L~~L~l~~~~l~~lp~-~----i~~l-~~L~~L~l~~~~~~~----~lp~~~~~l~-~L~~L~l~~ 522 (639)
+..+.. + ++|+.|++++|.++..+. . +..+ ++|++|++++|.+.. .++..+..++ +|++|++++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 443332 2 567777777777664432 2 2222 467777777766442 3333344444 677777777
Q ss_pred CCccccccccC----CCC-cCCccccceEecCCCccCCC----ccCCccc-ccCCCcCCceeeeCcCCCCChhhhccccc
Q 006588 523 TDSVRYMPVGI----ARL-KSLRTLEEVRVSGRGCLDGR----KACRLES-LKNLEHLQICGIRGLGDVSDVGEAKRLEL 592 (639)
Q Consensus 523 n~~~~~~p~~~----~~l-~~L~~L~~~~~~~~~~~~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 592 (639)
|.+....+..+ ..+ ++|++|+ .+.|.+... ++..+.. .++|+.|++++|.+..... ..+...+
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~----Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~~ 249 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLD----LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL---ENLKLLK 249 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEE----CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH---HHHHHTT
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEE----CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH---HHHHHHH
Confidence 76544444322 223 3666665 333323221 2233333 2467777776665432211 1122234
Q ss_pred ccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 593 DKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 593 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
..+++|+.|+|++|.+.. ........+.+.+..+++|+.|++
T Consensus 250 ~~l~~L~~L~L~~n~l~~-----i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKN-----MSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp TTTTTCSEEEEEHHHHTT-----CCHHHHHHHHTTSTTCCEEEEECT
T ss_pred hcCCCccEEEeccCCccc-----cCHHHHHHHHHHhccCCceEEEec
Confidence 555667777777665321 111123334445555555655543
No 99
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=2.4e-14 Score=159.33 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=142.5
Q ss_pred ccccCCCceEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccc
Q 006588 383 VKKSLDEKVRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRN 461 (639)
Q Consensus 383 ~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~ 461 (639)
+|...+..++.|.+++|.+..+| ..|.++++|+.|++++|.+ ..+++..|.++++|++|+|++|.+.+..+..
T Consensus 46 vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i------~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI------QTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp CCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC------CEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred cCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC------CCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 44556789999999999998887 5799999999998888874 3566666899999999999999965555577
Q ss_pred ccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCcc-ccchhhhhcccCceeecCCCCccccccccCCCCcCC
Q 006588 462 IKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLK-ELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSL 539 (639)
Q Consensus 462 ~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 539 (639)
|.++.+|++|++++|.++.+|+ .++.+++|++|++++|.+.. .+|..+..+++|++|++++|.+.+..|..+..+.++
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 8999999999999999998876 58999999999999998644 467888999999999999998877777777777776
Q ss_pred ccccceEecCCCccCCCccCCcccccCCCcCCceee
Q 006588 540 RTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGI 575 (639)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 575 (639)
+.+........+.+....+..+.. ..+..+.+.+|
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n 234 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNN 234 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESC
T ss_pred hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcc
Confidence 655433334444333333332222 23344444444
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=8.3e-14 Score=138.65 Aligned_cols=141 Identities=20% Similarity=0.282 Sum_probs=78.2
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
...++.+.+.++.+..++. +.++++|+.|.+.+|.+. .++. +..+++|++|++++|.+.. + ..+..+++
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~------~~~~--l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~ 135 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK------DLSS--LKDLKKLKSLSLEHNGISD-I-NGLVHLPQ 135 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC------CGGG--GTTCTTCCEEECTTSCCCC-C-GGGGGCTT
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC------CChh--hccCCCCCEEECCCCcCCC-C-hhhcCCCC
Confidence 3556666666666655554 566666666655555532 1221 5556666666666666333 2 23555666
Q ss_pred CcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccc
Q 006588 468 LRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEE 544 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~ 544 (639)
|+.|++++|.++.+ +.++.+++|+.|++++|.+ ..++. +..+++|++|++++|.+. .+|. +..+++|+.|++
T Consensus 136 L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l 207 (291)
T 1h6t_A 136 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLEL 207 (291)
T ss_dssp CCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEE
T ss_pred CCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh-hcCCCccCEEECCCCcCC-CChh-hccCCCCCEEEC
Confidence 66666666666655 3556666666666666653 33333 556666666666666432 3332 555555655553
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.50 E-value=1.1e-13 Score=151.30 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=40.6
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
..+++.|.+.++.+..+|. .+++|+.|.+.+|.+. .+|. .+++|+.|++++|.+ ..+|.. +++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~------~l~~----~l~~L~~L~L~~N~l-~~lp~~---l~~ 142 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT------HLPA----LPSGLCKLWIFGNQL-TSLPVL---PPG 142 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC------CCCC----CCTTCCEEECCSSCC-SCCCCC---CTT
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC------CCCC----CCCCcCEEECCCCCC-CcCCCC---CCC
Confidence 3455555555555555553 4455555555555432 1221 345566666666653 234432 355
Q ss_pred CcEEeccCCCCcccch
Q 006588 468 LRYLNLSGQKIEKLPE 483 (639)
Q Consensus 468 L~~L~l~~~~l~~lp~ 483 (639)
|++|++++|.++.+|.
T Consensus 143 L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 143 LQELSVSDNQLASLPA 158 (622)
T ss_dssp CCEEECCSSCCSCCCC
T ss_pred CCEEECcCCcCCCcCC
Confidence 6666666666665543
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=9.2e-14 Score=129.84 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=121.1
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCC
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIH 467 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 467 (639)
...++.+.+.++.+..+| .+..+++|+.|.+.+|.+. .++ . +..+++|++|++++|.+.+..|..++.+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~------~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT------NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS------CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC------cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 367899999999999888 7999999999999988642 222 2 788999999999999977778888999999
Q ss_pred CcEEeccCCCCc-ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 468 LRYLNLSGQKIE-KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 468 L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
|++|++++|.++ ..|..++.+++|+.|++++|...+.+| .+..+++|++|++++|.+. .++ .+..+++|++|+
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEE
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEE
Confidence 999999999999 477889999999999999998677777 5999999999999999753 344 455666666665
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=4.3e-14 Score=134.52 Aligned_cols=142 Identities=19% Similarity=0.207 Sum_probs=88.0
Q ss_pred EEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEec
Q 006588 394 LMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNL 473 (639)
Q Consensus 394 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 473 (639)
+...++.+..+|..+. ++|+.|.+.+|.+ ..+++..+..+++|+.|++++|.+.+..|..|.++++|++|+|
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 4444455556665443 5667776666653 2334433566677777777777755555666677777777777
Q ss_pred cCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 474 SGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 474 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|.++.+|.. +..+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 77777766654 46677777777777765555555666677777777777765444444466666666665
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=9e-14 Score=150.23 Aligned_cols=127 Identities=23% Similarity=0.247 Sum_probs=63.0
Q ss_pred ceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 390 KVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 390 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
+++.+.+.++.+..+|..+. ++|+.|++++|.+. .+| ..+++|++|++++|.+.+ +|. +++ +|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~------~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI------SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS------CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc------ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence 34555555555555554332 45555555555432 223 224555555555555333 444 333 555
Q ss_pred EEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 470 YLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 470 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
+|++++|.++.+|. .+++|+.|++++|.+ ..+|. .+++|++|++++|.+.+ +|. +. ++|+.|+
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYINADNNQL-TMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALD 186 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEE
T ss_pred EEECCCCcCCCCCC---cCccccEEeCCCCcc-CcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEE
Confidence 55555555555554 455555555555552 23444 34555555555554332 444 33 4555554
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.7e-13 Score=130.33 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=102.9
Q ss_pred CceeEEecCCCCCCCcccccccccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchh-hhhcccCceee
Q 006588 442 TSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEG-IGKLINMKYLL 519 (639)
Q Consensus 442 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 519 (639)
++|+.|++++|.+.+..+..|..+++|++|+|++|.++.+ |..+..+++|++|+|++|.+ ..+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEE
Confidence 5788888888886555556788888888888888888865 66788888888888888884 455544 57788888888
Q ss_pred cCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCc
Q 006588 520 NRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGL 578 (639)
Q Consensus 520 l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 578 (639)
+++|.+.+..|..|..+++|++|+ ..+|.+.+..+..+..+++|+.|++.+|.+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLS----LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEE----CCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEE----CCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888887766677788888888887 5556666666777888888888888888753
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=8.4e-14 Score=132.49 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=70.7
Q ss_pred EEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEe
Q 006588 393 HLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLN 472 (639)
Q Consensus 393 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 472 (639)
.+.+.++.+..+|..+. +.++.|.+.+|.+. +..+...+..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~-----~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFT-----VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCC-----EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCC-----ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 44455555555554332 23345544444431 111222244555555555555554333334455555555555
Q ss_pred ccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 473 LSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 473 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
|++|.++.+|. .+..+++|++|+|++|.+.+..|..+..+++|++|++++|.+.+..|..|..+++|++|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 55555554443 245555555555555554444444455555555555555554444444455555555554
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=131.16 Aligned_cols=153 Identities=17% Similarity=0.110 Sum_probs=120.1
Q ss_pred cEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccc-ccccccCCCcEEeccCCCCcccch-hhhcCCCcc
Q 006588 415 RSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIP-RNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLE 492 (639)
Q Consensus 415 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~ 492 (639)
+.+++.++.+ ..+|..+ ...++.|++++|.+.+..| ..|.++++|++|++++|.++.++. .+..+++|+
T Consensus 14 ~~l~~s~n~l------~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 84 (220)
T 2v70_A 14 TTVDCSNQKL------NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84 (220)
T ss_dssp TEEECCSSCC------SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEeEeCCCCc------ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence 4677776663 2455432 3467899999999655434 457889999999999999997765 788999999
Q ss_pred EEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCc
Q 006588 493 KLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQI 572 (639)
Q Consensus 493 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 572 (639)
+|+|++|.+.+..|..+..+++|++|++++|.+.+..|..|..+++|++|+ ..+|.+.+..|..+..+++|+.|++
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~----L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS----LYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE----CTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE----CCCCcCCEECHHHhcCCCCCCEEEe
Confidence 999999986655556688899999999999987777788888888898887 5666777777888999999999999
Q ss_pred eeeeCcCC
Q 006588 573 CGIRGLGD 580 (639)
Q Consensus 573 ~~n~~~~~ 580 (639)
.+|.+...
T Consensus 161 ~~N~l~c~ 168 (220)
T 2v70_A 161 LANPFNCN 168 (220)
T ss_dssp CSCCEECS
T ss_pred cCcCCcCC
Confidence 88876543
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=8.9e-13 Score=127.62 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=124.3
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
|....+++||+++++.|.+++.... ..+.+.|+|++|+|||++|+.+++. ....+... ...+... ...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~-~~~~~~~----~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGIT-ATPCGVC----DNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSC-SSCCSCS----HHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCC-CCCCccc----HHH
Confidence 3334569999999999999997543 3458999999999999999999874 22221110 0000000 001
Q ss_pred HHHHHHcc-----CCCCCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 103 KAMLEALT-----GSTSNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 103 ~~il~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
..+..... .........+.....+... ..+++.+||+||++..+...+..+...+.....+..+|+||+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 11110000 0000011122222222211 23567999999998876666777777777766778888888764
Q ss_pred HH-H-hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 174 SI-A-SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 174 ~~-~-~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
.. . ........+++.+++.++..+++...+........ .+.++.|++.++|+|..+..+...+
T Consensus 167 ~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 167 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC----HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 31 1 11233568999999999999999887753322211 2336889999999999888776544
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.8e-14 Score=147.02 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=153.4
Q ss_pred EEEecccCc-ccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCC-ceeEEecCCCCCCCccccccccc-----CC
Q 006588 395 MLIIGKEST-FPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELT-SLRALDFPSLYLPSEIPRNIKKL-----IH 467 (639)
Q Consensus 395 ~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~l-----~~ 467 (639)
.+..+.+.. +|..+...++|+.|++++|.+..... ......+..++ +|+.|++++|.+....+..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 344555543 45555666679999888887532211 11114477888 99999999999777667667665 89
Q ss_pred CcEEeccCCCCcccc-hh----hhcC-CCccEEecCCCCCccccchhhhh-----cccCceeecCCCCccc----ccccc
Q 006588 468 LRYLNLSGQKIEKLP-EA----LCEL-YNLEKLDICSCSCLKELPEGIGK-----LINMKYLLNRDTDSVR----YMPVG 532 (639)
Q Consensus 468 L~~L~l~~~~l~~lp-~~----i~~l-~~L~~L~l~~~~~~~~lp~~~~~-----l~~L~~L~l~~n~~~~----~~p~~ 532 (639)
|+.|++++|.++..+ .. +..+ ++|+.|++++|.+....+..+.. .++|++|++++|.+.. .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999999544 33 4455 89999999999965544444433 2599999999998764 34444
Q ss_pred CCCCc-CCccccceEecCCCccCCCccCCcc----cc-cCCCcCCceeeeCcCCCCChhhhccccccc-ccCcceEEEEe
Q 006588 533 IARLK-SLRTLEEVRVSGRGCLDGRKACRLE----SL-KNLEHLQICGIRGLGDVSDVGEAKRLELDK-KKYLFSLTLKF 605 (639)
Q Consensus 533 ~~~l~-~L~~L~~~~~~~~~~~~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~ 605 (639)
+..++ +|++|+ ...+.+....+..+. .+ ++|+.|++++|.+.... ...+...+.. .++|+.|+|++
T Consensus 162 l~~~~~~L~~L~----Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 162 LAAIPANVNSLN----LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS---YAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHTSCTTCCEEE----CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---HHHHHHHHHHSCTTCCEEECCS
T ss_pred HhcCCccccEee----ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---HHHHHHHHhcCCCCceEEECcC
Confidence 45554 888888 445555555554443 34 69999999999854311 1112223444 46999999999
Q ss_pred ccCCcCCCCCCCcccHHHHhhcCCCCCCCcceeC
Q 006588 606 DEKEKRGGERRKNEDDQLLLEALRPPPYLKELAI 639 (639)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 639 (639)
|.+.+ .....+...+..+++|+.|+|
T Consensus 235 N~l~~--------~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 235 NCLHG--------PSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp SCCCC--------CCHHHHHHTTTTTTTCSEEEE
T ss_pred CCCCc--------HHHHHHHHHHhcCCCccEEEe
Confidence 98653 233444556677888888764
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=3.6e-14 Score=150.43 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=74.2
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCC--------------------------
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELT-------------------------- 442 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~-------------------------- 442 (639)
..++.+.+.++.+..+|..++++++|+.|++.+|.+ .+.+|.. ++.+.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~-----~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-----ERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------CCHHHHHHHHHHH-----HHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcc-----cccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 567777888887777887888888888887766654 3444433 23222
Q ss_pred -------ceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccC
Q 006588 443 -------SLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINM 515 (639)
Q Consensus 443 -------~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 515 (639)
+|+.|++++|.+.+ +|.. +.+|++|++++|.++.+|.. .++|++|++++|.+. .+| .++++++|
T Consensus 85 ~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L 155 (454)
T 1jl5_A 85 SLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFL 155 (454)
T ss_dssp CCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-CCTTCTTC
T ss_pred cCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-ccCCCCCC
Confidence 34444444444322 3321 23455555555554443321 146777777776633 366 36677777
Q ss_pred ceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCc
Q 006588 516 KYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGL 578 (639)
Q Consensus 516 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 578 (639)
++|++++|.+. .+|..+ .+|++|+ ...+.+.+ +| .++.+++|+.|++++|.+.
T Consensus 156 ~~L~l~~N~l~-~lp~~~---~~L~~L~----L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 156 KIIDVDNNSLK-KLPDLP---PSLEFIA----AGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CEEECCSSCCS-CCCCCC---TTCCEEE----CCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CEEECCCCcCc-ccCCCc---ccccEEE----CcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 77777777543 355433 3555555 22333333 34 4666666666666666543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=8e-14 Score=152.33 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=103.1
Q ss_pred cCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccccc
Q 006588 386 SLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKL 465 (639)
Q Consensus 386 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 465 (639)
.....++.|.|.++.+..++. +..+++|+.|.+.+|.+.. ++ . +..+++|+.|+|++|.+.. ++ .+..+
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------l~-~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l 130 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------LS-S-LKDLKKLKSLSLEHNGISD-IN-GLVHL 130 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------CT-T-STTCTTCCEEECTTSCCCC-CG-GGGGC
T ss_pred ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC------Ch-h-hccCCCCCEEEecCCCCCC-Cc-cccCC
Confidence 345678888888887777665 7788888888777777532 22 2 6778888888888888543 33 47778
Q ss_pred CCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccc
Q 006588 466 IHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEE 544 (639)
Q Consensus 466 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~ 544 (639)
++|+.|+|++|.++.+ ..++.+++|+.|+|++|.+.+ +++ +..+++|+.|++++|.+.+ +| .+..+++|+.|++
T Consensus 131 ~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L 204 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 204 (605)
T ss_dssp TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEC
T ss_pred CccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEc
Confidence 8888888888888877 567788888888888887444 433 7788888888888886543 44 4677777777773
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2e-13 Score=130.81 Aligned_cols=141 Identities=22% Similarity=0.276 Sum_probs=75.2
Q ss_pred EEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEec
Q 006588 394 LMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNL 473 (639)
Q Consensus 394 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 473 (639)
+....+.+..+|..+. ++|+.|++.+|.+. .+++..+..+++|+.|++++|.+....+..|.++++|++|+|
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQIT------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccC------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 3334444455554443 56666655555532 222223555666666666666643333344555666666666
Q ss_pred cCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 474 SGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 474 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|.++.+|.. +..+++|+.|++++|. +..+|..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 66666655443 4556666666666665 335565566666666666666654333223344555555554
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=1.2e-13 Score=153.66 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=127.0
Q ss_pred ccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCc
Q 006588 400 KESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIE 479 (639)
Q Consensus 400 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~ 479 (639)
.+..+|..++ ++++.|++++|.+ ..+++..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|+++
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CcCccCCCCC--cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 4467786654 4789998888874 3566666889999999999999965555667899999999999999999
Q ss_pred ccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccc-cccccCCCCcCCccccceEecCCCccCCCc
Q 006588 480 KLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVR-YMPVGIARLKSLRTLEEVRVSGRGCLDGRK 557 (639)
Q Consensus 480 ~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~ 557 (639)
.+|. .|.++++|++|++++|.+.+..+..++++++|++|++++|.+.. ..|..++.+++|++|+ ...+.+.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~----L~~N~l~~~~ 189 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD----LSSNKIQSIY 189 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE----CCSSCCCEEC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc----ccCccccccc
Confidence 8876 57899999999999998554434458999999999999997654 4677788899999998 5556667777
Q ss_pred cCCcccccCCCcCCc
Q 006588 558 ACRLESLKNLEHLQI 572 (639)
Q Consensus 558 ~~~~~~l~~L~~L~l 572 (639)
+..+..+.++..+..
T Consensus 190 ~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNL 204 (635)
T ss_dssp GGGGHHHHTCTTCCC
T ss_pred cccccchhhhhhhhh
Confidence 777877777765444
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=1.4e-14 Score=154.54 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=99.2
Q ss_pred CceEEEEEEecccC-----cccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCC----ceeEEecCCCCCCC---
Q 006588 389 EKVRHLMLIIGKES-----TFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELT----SLRALDFPSLYLPS--- 456 (639)
Q Consensus 389 ~~~~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~n~~~~--- 456 (639)
+.++.+.+.++.+. .++..+..+++|+.|++++|.+ ....+..+...++ +|++|++++|.+..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-----HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-----ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 45667777776654 3455566677777776665553 3333444444455 57777777777542
Q ss_pred -cccccccccCCCcEEeccCCCCccc-chhhh-----cCCCccEEecCCCCCcc----ccchhhhhcccCceeecCCCCc
Q 006588 457 -EIPRNIKKLIHLRYLNLSGQKIEKL-PEALC-----ELYNLEKLDICSCSCLK----ELPEGIGKLINMKYLLNRDTDS 525 (639)
Q Consensus 457 -~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~n~~ 525 (639)
.++..+..+++|+.|++++|.++.. +..+. ..++|++|++++|.+.. .++..+..+++|++|++++|.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 3466666777777777777776622 22221 24467777777766443 2344455566777777777654
Q ss_pred cccccccCC-----CCcCCccccceEecCCCccCCC----ccCCcccccCCCcCCceeee
Q 006588 526 VRYMPVGIA-----RLKSLRTLEEVRVSGRGCLDGR----KACRLESLKNLEHLQICGIR 576 (639)
Q Consensus 526 ~~~~p~~~~-----~l~~L~~L~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n~ 576 (639)
....+..+. ..++|++|+ ..++.+... ++..+..+++|+.|++++|.
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~----L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALK----LESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEE----CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred chHHHHHHHHHHhcCCCCceEEE----ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 433222221 133555555 222323221 24444555666666666654
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3e-13 Score=129.59 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=118.6
Q ss_pred ccCCCceEEEEEEecccCcc-cccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc
Q 006588 385 KSLDEKVRHLMLIIGKESTF-PISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK 463 (639)
Q Consensus 385 ~~~~~~~~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 463 (639)
......++.+.+.++.+..+ |..+..+++|+.|.+.+|.+ ..+++..+..+++|++|++++|.+.+..+..|.
T Consensus 36 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l------~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL------GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC------CCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 44568999999999999776 57789999999999988885 355666578899999999999997766667788
Q ss_pred ccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccc
Q 006588 464 KLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYM 529 (639)
Q Consensus 464 ~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~ 529 (639)
.+++|++|++++|.++.+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|++....
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999999999999999999999999999999999855443455889999999999999865443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1e-14 Score=158.47 Aligned_cols=178 Identities=14% Similarity=0.186 Sum_probs=92.7
Q ss_pred cCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCC-------------CCCcccccccccCCCcEEe-cc
Q 006588 409 CRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLY-------------LPSEIPRNIKKLIHLRYLN-LS 474 (639)
Q Consensus 409 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~p~~~~~l~~L~~L~-l~ 474 (639)
..+++|+.|+++.|. ...+|+. +..|++|+.|++++|. ..+..|..++++++|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls~n~------L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEK------STVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHH------HHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred ccCccceeccCChhh------HHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence 446666666666665 3355554 5666677777765553 2344455555555555555 44
Q ss_pred CCCCcccch------hhhc--CCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceE
Q 006588 475 GQKIEKLPE------ALCE--LYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVR 546 (639)
Q Consensus 475 ~~~l~~lp~------~i~~--l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 546 (639)
.|.+..++. .+.. ...|+.|++++|. +..+|. ++.+++|+.|++++|.+. .+|..++.+++|++|+
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~--- 492 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQ--- 492 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE---
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEE---
Confidence 443332221 1111 1235566666655 333554 556666666666666433 5555555555665555
Q ss_pred ecCCCccCCCccCCcccccCCCcCCceeeeCcCCC-CChhhhcccccccccCcceEEEEeccCC
Q 006588 547 VSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDV-SDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.++|.+++ +| .++.+++|+.|++++|.+.+.. |. .+..+++|+.|+|+.|.+.
T Consensus 493 -Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~-------~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 493 -ASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ-------PLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp -CCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG-------GGGGCTTCCEEECTTSGGG
T ss_pred -CCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH-------HHhcCCCCCEEEecCCcCC
Confidence 33333333 34 5555666666666665543332 22 2455556666666655543
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=1e-13 Score=141.99 Aligned_cols=194 Identities=16% Similarity=0.108 Sum_probs=135.6
Q ss_pred ecCCcccccccccCCCceEEEEEEecccCcccc-cccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeE-EecCC
Q 006588 374 EINGSEELNVKKSLDEKVRHLMLIIGKESTFPI-STCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRA-LDFPS 451 (639)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~ 451 (639)
...+...+| ......++.|.+.++.+..+|. .|.++++|+.|++++|.+ .+.+++..|.+++++.. +.+++
T Consensus 17 ~~~~Lt~iP--~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-----~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 17 QESKVTEIP--SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-----LEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp ESTTCCSCC--TTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-----CCEECTTSBCSCTTCCEEEEEEE
T ss_pred cCCCCCccC--cCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-----CCccChhHhhcchhhhhhhcccC
Confidence 333444443 3456789999999999999985 589999999999988874 34456555777877665 56667
Q ss_pred CCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccch-hhhhcc-cCceeecCCCCcccc
Q 006588 452 LYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPE-GIGKLI-NMKYLLNRDTDSVRY 528 (639)
Q Consensus 452 n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~-~L~~L~l~~n~~~~~ 528 (639)
|.+....|..|..+++|++|++++|.++.+|. .+....++..|++.++.....+|. .+..+. .++.|++++|.+ ..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QE 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cC
Confidence 88655567788899999999999999987765 344566777888766554666654 345553 578888888864 45
Q ss_pred ccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCc
Q 006588 529 MPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGL 578 (639)
Q Consensus 529 ~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 578 (639)
+|.......+|++|. ...++.+....+..|..+++|+.|++++|.+.
T Consensus 169 i~~~~f~~~~L~~l~---l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 IHNSAFNGTQLDELN---LSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTTSSTTEEEEEEE---CTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CChhhccccchhHHh---hccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 665555556666665 22334444444456788888888888888653
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=3.6e-13 Score=147.37 Aligned_cols=138 Identities=20% Similarity=0.244 Sum_probs=100.3
Q ss_pred eeEEecCCcccccccccCCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEec
Q 006588 370 CLSLEINGSEELNVKKSLDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDF 449 (639)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l 449 (639)
.+..........+ ....++++.|.+.++.+..+|. .+++|+.|++++|.+. .+|. .+++|++|++
T Consensus 44 ~L~ls~n~L~~lp--~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~------~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 44 VLNVGESGLTTLP--DCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT------SLPV----LPPGLLELSI 108 (622)
T ss_dssp EEECCSSCCSCCC--SCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS------CCCC----CCTTCCEEEE
T ss_pred EEEecCCCcCccC--hhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC------cCCC----CCCCCCEEEC
Confidence 3444445555443 3445899999999999998886 6899999999998853 3443 6899999999
Q ss_pred CCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchh---hhhc--------------
Q 006588 450 PSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEG---IGKL-------------- 512 (639)
Q Consensus 450 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~---~~~l-------------- 512 (639)
++|.+ ..+|. .+.+|+.|++++|.++.+|.. +++|++|++++|.+ ..+|.. +..+
T Consensus 109 s~N~l-~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 109 FSNPL-THLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp CSCCC-CCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred cCCcC-CCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCCccCCCCEEECCCCCCCCCcccC
Confidence 99994 44555 567899999999999999874 48899999999984 444442 2233
Q ss_pred ccCceeecCCCCccccccc
Q 006588 513 INMKYLLNRDTDSVRYMPV 531 (639)
Q Consensus 513 ~~L~~L~l~~n~~~~~~p~ 531 (639)
++|+.|++++|.+. .+|.
T Consensus 181 ~~L~~L~Ls~N~l~-~l~~ 198 (622)
T 3g06_A 181 SGLQELSVSDNQLA-SLPT 198 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC
T ss_pred CCCcEEECCCCCCC-CCCC
Confidence 56666677666533 3443
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2e-14 Score=161.11 Aligned_cols=192 Identities=16% Similarity=0.108 Sum_probs=114.4
Q ss_pred EEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccC
Q 006588 396 LIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSG 475 (639)
Q Consensus 396 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 475 (639)
+..+.+...+..+..+++|+.|++.+|.+. .++.. +..+++|++|+|++|.+. .+|..++++++|++|+|++
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~------~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF------NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS------CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC------CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC
Confidence 333444445677889999999988888753 45555 447999999999999965 8898899999999999999
Q ss_pred CCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCC-ccccceEecCCCccC
Q 006588 476 QKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSL-RTLEEVRVSGRGCLD 554 (639)
Q Consensus 476 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L-~~L~~~~~~~~~~~~ 554 (639)
|.|+.+|..++.|++|++|+|++|. ++.+|..++.+++|++|++++|.+.+.+|..+..+... ..|. ..+|.+.
T Consensus 280 N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~----l~~N~l~ 354 (727)
T 4b8c_D 280 NRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY----LRDNRPE 354 (727)
T ss_dssp SCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH----HHHCCCC
T ss_pred CcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh----hccCccc
Confidence 9999999999999999999999998 56899889999999999999999888888766443211 1223 3455566
Q ss_pred CCccCCcccccCCCcCCceee----eCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 555 GRKACRLESLKNLEHLQICGI----RGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 555 ~~~~~~~~~l~~L~~L~l~~n----~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
+.+|.. |+.|+++.| ...+.++ ......+.++..++...+++|...
T Consensus 355 ~~~p~~------l~~l~l~~n~~~~~~~~~l~---~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 355 IPLPHE------RRFIEINTDGEPQREYDSLQ---QSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCCC--------------------------------------------------CCC
T ss_pred CcCccc------cceeEeecccccccccCCcc---ccccchhhcccccceeeeeccccc
Confidence 777754 444555544 1222222 233334556667777888888754
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=2.5e-12 Score=122.49 Aligned_cols=190 Identities=11% Similarity=-0.004 Sum_probs=121.9
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCchHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDEFR 100 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ 100 (639)
.|....+++||++.++++.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.++.....+...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV 84 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHH
Confidence 34445679999999999999997542 33499999999999999999987421 1122 2334444444333322
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHH--Hhh
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESI--ASM 178 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~--~~~ 178 (639)
+...+....... .....++.+||+||++.........+...+.....++.+|+||+.... ...
T Consensus 85 ~~~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 85 VRHKIKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp HHHHHHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHH
Confidence 222111111100 011357899999999887655566677777776677888888876431 111
Q ss_pred hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 179 MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 179 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
......+++.+++.++..+++...+........ .+.++.+++.++|+|..+..+.
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 233448999999999999999887642222111 2336788899999998654443
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.42 E-value=1.8e-14 Score=153.86 Aligned_cols=190 Identities=16% Similarity=0.057 Sum_probs=91.4
Q ss_pred CCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcc-----cccccccCCCcEEeccCCCCcc-----
Q 006588 411 TKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEI-----PRNIKKLIHLRYLNLSGQKIEK----- 480 (639)
Q Consensus 411 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~~~l~~----- 480 (639)
+++|+.|.+.+|.+..... ..+ +..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.++.
T Consensus 198 ~~~L~~L~L~~n~l~~~~~-~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNC-RDL-CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp CCCCCEEECTTSCCBTTHH-HHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CCCceEEEccCCCCcHHHH-HHH-HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 3455555555554321110 012 222455566666666666532221 1122235566666666666553
Q ss_pred cchhhhcCCCccEEecCCCCCccccchhhhhc-----ccCceeecCCCCcccc----ccccCCCCcCCccccceEecCCC
Q 006588 481 LPEALCELYNLEKLDICSCSCLKELPEGIGKL-----INMKYLLNRDTDSVRY----MPVGIARLKSLRTLEEVRVSGRG 551 (639)
Q Consensus 481 lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~~~~~~~~~ 551 (639)
++..+..+++|+.|++++|.+...-+..+... ++|++|++++|.+... +|..+..+++|++|+ ..++
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~----Ls~n 351 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ----ISNN 351 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE----CCSS
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE----ccCC
Confidence 45555556666666666665433222223222 4666666666654433 344444555666665 2223
Q ss_pred ccCCCccCCccc-----ccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 552 CLDGRKACRLES-----LKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 552 ~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.+....+..+.. .++|+.|++++|.+... ....+...+..+++|+.|+|++|.++
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~---~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS---SCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH---HHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChh---hHHHHHHHHHhCCCccEEECCCCCCC
Confidence 222222222222 45666666666653210 00122334556777777777777644
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=8.8e-14 Score=143.15 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=37.5
Q ss_pred hCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCcee
Q 006588 440 ELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYL 518 (639)
Q Consensus 440 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 518 (639)
.+++|+.|++++|.+.+..+..|.++++|++|+|++|.++.+|. .+..+++|+.|+|++|.+....|..+.++++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 44444444444444333233334444444444444444443332 23444444444444444333333344444444444
Q ss_pred ecCCCC
Q 006588 519 LNRDTD 524 (639)
Q Consensus 519 ~l~~n~ 524 (639)
++++|.
T Consensus 142 ~L~~N~ 147 (361)
T 2xot_A 142 YLSQNQ 147 (361)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 444443
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=2.2e-12 Score=136.68 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=79.3
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+.++.+..+|.. .++|+.|.+.+|.+. .+| . +..+++|++|++++|.+. .+|..+ .+|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~------~lp-~-~~~l~~L~~L~l~~N~l~-~lp~~~---~~L 175 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE------KLP-E-LQNSSFLKIIDVDNNSLK-KLPDLP---PSL 175 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS------SCC-C-CTTCTTCCEEECCSSCCS-CCCCCC---TTC
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC------CCc-c-cCCCCCCCEEECCCCcCc-ccCCCc---ccc
Confidence 4455555555544443321 145555555554432 133 2 555666666666666533 244322 356
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEec
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVS 548 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 548 (639)
++|++++|.++.+| .++.+++|+.|++++|.+ ..+|.. .++|++|++++|.+. .+|. ++.+++|++|+ .
T Consensus 176 ~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~----l 244 (454)
T 1jl5_A 176 EFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIY----A 244 (454)
T ss_dssp CEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEE----C
T ss_pred cEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEE----C
Confidence 66666666666555 455666666666666653 234432 135666666666433 5553 55566666665 2
Q ss_pred CCCccCCCccCCcccccCCCcCCceeeeC
Q 006588 549 GRGCLDGRKACRLESLKNLEHLQICGIRG 577 (639)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 577 (639)
.++.+.+ +|. .+++|+.|++++|.+
T Consensus 245 ~~N~l~~-l~~---~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 245 DNNLLKT-LPD---LPPSLEALNVRDNYL 269 (454)
T ss_dssp CSSCCSS-CCS---CCTTCCEEECCSSCC
T ss_pred CCCcCCc-ccc---cccccCEEECCCCcc
Confidence 2232322 222 125566666666554
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=7e-13 Score=129.79 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=85.6
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+.++.+..++ .+..+++|+.|.+.+|.+. .+++ +..+++|+.|++++|.+. .+|... . .+|
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~------~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L 108 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQIS------DLSP--LKDLTKLEELSVNRNRLK-NLNGIP-S-ACL 108 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC------CCGG--GTTCSSCCEEECCSSCCS-CCTTCC-C-SSC
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccC------CChh--hccCCCCCEEECCCCccC-CcCccc-c-Ccc
Confidence 56666777666666665 5666777777766666532 2233 566677777777777643 343322 2 667
Q ss_pred cEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccce
Q 006588 469 RYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEV 545 (639)
Q Consensus 469 ~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~ 545 (639)
+.|++++|.++.++ .+..+++|+.|++++|. ...+| .+..+++|++|++++|.+.+. ..+..+++|+.|++.
T Consensus 109 ~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 109 SRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp CEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred cEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 77777777776654 46667777777777766 33444 366667777777777754433 445566666666643
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=6.8e-13 Score=120.47 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=97.4
Q ss_pred hCCceeEEecCCCCCC-CcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCcee
Q 006588 440 ELTSLRALDFPSLYLP-SEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYL 518 (639)
Q Consensus 440 ~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 518 (639)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4578899999998865 57788788888999999999998877 678888999999999988666677777778999999
Q ss_pred ecCCCCcccccc--ccCCCCcCCccccceEecCCCccCCCcc---CCcccccCCCcCCceeeeC
Q 006588 519 LNRDTDSVRYMP--VGIARLKSLRTLEEVRVSGRGCLDGRKA---CRLESLKNLEHLQICGIRG 577 (639)
Q Consensus 519 ~l~~n~~~~~~p--~~~~~l~~L~~L~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~~ 577 (639)
++++|.+.+ +| ..+..+++|++|+ ...|.+.+..+ ..+..+++|+.|++.+|..
T Consensus 101 ~Ls~N~l~~-~~~~~~l~~l~~L~~L~----l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKD-ISTLEPLKKLECLKSLD----LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCS-SGGGGGGSSCSCCCEEE----CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCc-chhHHHHhcCCCCCEEE----eeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999986543 33 5566677777766 33333443333 2566677777777777653
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=3.3e-13 Score=119.82 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=78.9
Q ss_pred CCceeEEecCCCCCC-CcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceee
Q 006588 441 LTSLRALDFPSLYLP-SEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLL 519 (639)
Q Consensus 441 l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 519 (639)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 466777777777755 46676667777777777777777766 5667777777777777775555666666677777777
Q ss_pred cCCCCcccc-ccccCCCCcCCccccceEecCCCccCCCcc---CCcccccCCCcCCc
Q 006588 520 NRDTDSVRY-MPVGIARLKSLRTLEEVRVSGRGCLDGRKA---CRLESLKNLEHLQI 572 (639)
Q Consensus 520 l~~n~~~~~-~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~l 572 (639)
+++|.+.+. .|..++.+++|++|+ ..+|.+.+..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~----l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLD----LFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEE----CTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEe----CcCCcccchHHHHHHHHHHCCCcccccC
Confidence 777764331 224455555555554 22333332222 23445555555544
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.7e-12 Score=127.12 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=114.2
Q ss_pred EEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccC
Q 006588 396 LIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSG 475 (639)
Q Consensus 396 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 475 (639)
+..+.+..++ .+.++++|+.|.+.+|.+. .++ . +..+++|+.|++++|.+.+ ++. +.++++|++|++++
T Consensus 26 l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~------~l~-~-l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 26 LGKQSVTDLV-SQKELSGVQNFNGDNSNIQ------SLA-G-MQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HTCSCTTSEE-CHHHHTTCSEEECTTSCCC------CCT-T-GGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred hcCCCccccc-chhhcCcCcEEECcCCCcc------cch-H-HhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 3344444455 5677888888888877753 233 2 6778888888888888544 444 78888888888888
Q ss_pred CCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCC
Q 006588 476 QKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDG 555 (639)
Q Consensus 476 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~ 555 (639)
|.++.+|.... ++|+.|++++|. ...+| .+..+++|+.|++++|.+. .+| .++.+++|++|+ ..+|.+.+
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~----L~~N~i~~ 164 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLD----LHGNEITN 164 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEE----CTTSCCCB
T ss_pred CccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEE----CCCCcCcc
Confidence 88887765333 888888888887 44455 4888888888888888754 344 567777888777 44444444
Q ss_pred CccCCcccccCCCcCCceeeeCcC
Q 006588 556 RKACRLESLKNLEHLQICGIRGLG 579 (639)
Q Consensus 556 ~~~~~~~~l~~L~~L~l~~n~~~~ 579 (639)
. ..+..+++|+.|++++|.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 3 567788888888888887643
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=5.2e-13 Score=121.25 Aligned_cols=133 Identities=24% Similarity=0.269 Sum_probs=86.4
Q ss_pred CceEEEEEEecccC--cccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccC
Q 006588 389 EKVRHLMLIIGKES--TFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLI 466 (639)
Q Consensus 389 ~~~~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 466 (639)
..++.+.+.++.+. .+|..+..+++|+.|++.+|.+... ..+..+++|++|++++|.+.+.+|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 56777777777765 6666667777777777776664321 1256677777777777775555666666677
Q ss_pred CCcEEeccCCCCcccc--hhhhcCCCccEEecCCCCCccccch----hhhhcccCceeecCCCCccccccc
Q 006588 467 HLRYLNLSGQKIEKLP--EALCELYNLEKLDICSCSCLKELPE----GIGKLINMKYLLNRDTDSVRYMPV 531 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~lp~----~~~~l~~L~~L~l~~n~~~~~~p~ 531 (639)
+|++|++++|.++.+| ..+..+++|+.|++++|.+ ..+|. .+..+++|++|++++|. ...+|.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 7777777777777655 5666777777777777763 33443 56667777777777764 334443
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1.2e-12 Score=121.51 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=52.7
Q ss_pred ceeEEecCCCCCCCcccc-cccccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchhhhhcccCceeec
Q 006588 443 SLRALDFPSLYLPSEIPR-NIKKLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLN 520 (639)
Q Consensus 443 ~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 520 (639)
+|+.|++++|.+.+..+. .+..+++|++|++++|.++.+ |..+..+++|++|+|++|.+.+..|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555555555553332222 255555555555555555543 345555555555555555544433444555555555555
Q ss_pred CCCCccccccccCCCCcCCcccc
Q 006588 521 RDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 521 ~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|.+.+..|..+..+++|++|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEEE
Confidence 55555444455555555555554
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=5.2e-13 Score=137.36 Aligned_cols=174 Identities=17% Similarity=0.084 Sum_probs=129.2
Q ss_pred cEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccccccc-ccCCCcEEeccCCCCcccch-hhhcCCCcc
Q 006588 415 RSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIK-KLIHLRYLNLSGQKIEKLPE-ALCELYNLE 492 (639)
Q Consensus 415 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~ 492 (639)
+.+.+.++.+ ..+|..+ ...++.|+|++|.+.+..+..+. ++++|++|+|++|.|+.++. .+..+++|+
T Consensus 21 ~~l~c~~~~l------~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQQL------PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSSCC------SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCCCc------CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 4565655553 2344331 34689999999996665566676 89999999999999998774 689999999
Q ss_pred EEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCc---ccccCCCc
Q 006588 493 KLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRL---ESLKNLEH 569 (639)
Q Consensus 493 ~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~---~~l~~L~~ 569 (639)
+|+|++|.+....+..+.++++|++|++++|.+....|..|..+++|++|+ ..+|.+....+..+ ..+++|+.
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~----L~~N~l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY----LSQNQISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE----CCSSCCCSCCGGGTC----CTTCCE
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE----CCCCcCCeeCHHHhcCcccCCcCCE
Confidence 999999995554455689999999999999988777788899999999998 55555555444444 67999999
Q ss_pred CCceeeeCcCCCCChhhhcccccccccC--cceEEEEeccC
Q 006588 570 LQICGIRGLGDVSDVGEAKRLELDKKKY--LFSLTLKFDEK 608 (639)
Q Consensus 570 L~l~~n~~~~~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~ 608 (639)
|++++|.+.. ++. ..+..++. |+.|+|+.|.+
T Consensus 168 L~L~~N~l~~-l~~------~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 168 LDLSSNKLKK-LPL------TDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp EECCSSCCCC-CCH------HHHHHSCHHHHTTEECCSSCE
T ss_pred EECCCCCCCc-cCH------HHhhhccHhhcceEEecCCCc
Confidence 9999998643 221 12444554 47889887654
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=1e-12 Score=134.61 Aligned_cols=201 Identities=12% Similarity=0.038 Sum_probs=148.1
Q ss_pred EEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCccc-ccccccCCCcE-
Q 006588 393 HLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIP-RNIKKLIHLRY- 470 (639)
Q Consensus 393 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~- 470 (639)
.+.-.++.+.++|..+ .++++.|.+.+|.+ ..+|+..|.++++|++|+|++|.+.+.+| ..|.+++++..
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCC------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcC------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 4555667788899776 36899999999884 46777668999999999999999777776 45788888765
Q ss_pred EeccCCCCcccc-hhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccc-cCCCCc-CCccccceEe
Q 006588 471 LNLSGQKIEKLP-EALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPV-GIARLK-SLRTLEEVRV 547 (639)
Q Consensus 471 L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~l~-~L~~L~~~~~ 547 (639)
+.+++|+++.+| ..+..+++|++|++++|.+....+..+....++..|++.++..+..+|. .+..+. .++.|.
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~---- 160 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW---- 160 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE----
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc----
Confidence 667789999875 5678999999999999995544444556677888999877655666664 355443 567776
Q ss_pred cCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCC
Q 006588 548 SGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRG 612 (639)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 612 (639)
..+|.+.. +|.......+|+.|.+.++.....++. ..+..+++|+.|+|+.|.++.+.
T Consensus 161 L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~------~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 161 LNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPN------DVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp CCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCT------TTTTTEECCSEEECTTSCCCCCC
T ss_pred cccccccC-CChhhccccchhHHhhccCCcccCCCH------HHhccCcccchhhcCCCCcCccC
Confidence 44444443 455555567899999976555555554 24778899999999999877543
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=9.5e-13 Score=142.23 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=127.7
Q ss_pred CCCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccC
Q 006588 387 LDEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLI 466 (639)
Q Consensus 387 ~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 466 (639)
..++++.|.+.+|.+..+| ..+++|+.|++.+|.+. .+|. +.. +|++|++++|.+.+ +|. .++
T Consensus 78 l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~------~ip~--l~~--~L~~L~Ls~N~l~~-lp~---~l~ 140 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP---ELPASLEYLDACDNRLS------TLPE--LPA--SLKHLDVDNNQLTM-LPE---LPA 140 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS------CCCC--CCT--TCCEEECCSSCCSC-CCC---CCT
T ss_pred HcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC------Ccch--hhc--CCCEEECCCCcCCC-CCC---cCc
Confidence 3478999999999999888 55899999988888753 2444 333 99999999999655 666 578
Q ss_pred CCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCC-------
Q 006588 467 HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSL------- 539 (639)
Q Consensus 467 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L------- 539 (639)
+|++|++++|.++.+|. .+++|+.|++++|. +..+|. +. ++|++|++++|.+ ..+|. +.. +|
T Consensus 141 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--ESLEALDVSTNLL-ESLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC-CC--TTCCEEECCSSCC-SSCCC-CC----------CC
T ss_pred cccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch-hh--CCCCEEECcCCCC-Cchhh-HHH--hhhcccccc
Confidence 99999999999999887 67899999999998 445887 65 8999999999975 47887 644 66
Q ss_pred ccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCC
Q 006588 540 RTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVS 582 (639)
Q Consensus 540 ~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 582 (639)
+.|+ ..+|.+. .+|..+..+++|+.|++++|.+.+.+|
T Consensus 210 ~~L~----Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 210 IFFR----CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp EEEE----CCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred eEEe----cCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 7776 3444444 478888889999999999998765444
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=1e-13 Score=150.50 Aligned_cols=202 Identities=20% Similarity=0.199 Sum_probs=153.9
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeecccc--------CCCCchhhhHHHHHhhCCceeEEe-cCCCCCCCcc
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRF--------DHSSLNGEILEELFRELTSLRALD-FPSLYLPSEI 458 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l--------~~~~~~~~~~~~~~~~l~~L~~L~-l~~n~~~~~~ 458 (639)
.++++.+.+..+.+..+|..+++|++|+.|++.+|.. ......+. ++..+..+++|+.|+ ++.|.+ ..+
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~-~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYL-DDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHH-HHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhccc-chh
Confidence 4667788888888889999999999999998755430 00112333 444578889999998 665542 111
Q ss_pred cc------cccc--cCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccc
Q 006588 459 PR------NIKK--LIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMP 530 (639)
Q Consensus 459 p~------~~~~--l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p 530 (639)
+. .+.. ...|+.|++++|.++.+|. ++.+++|+.|+|++|. +..+|..++.+++|+.|++++|.+.+ +|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 11 1111 2369999999999999987 9999999999999999 45899999999999999999998654 77
Q ss_pred ccCCCCcCCccccceEecCCCccCCCc-cCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEE
Q 006588 531 VGIARLKSLRTLEEVRVSGRGCLDGRK-ACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTL 603 (639)
Q Consensus 531 ~~~~~l~~L~~L~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l 603 (639)
.++.+++|++|+ .++|.+.+.. |..++.+++|+.|++++|.+.+..+.... .+..+++|+.|++
T Consensus 503 -~l~~l~~L~~L~----Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~----l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 -GVANLPRLQELL----LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER----LAEMLPSVSSILT 567 (567)
T ss_dssp -GGTTCSSCCEEE----CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH----HHHHCTTCSEEEC
T ss_pred -ccCCCCCCcEEE----CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH----HHHHCcccCccCC
Confidence 788999999998 5666677776 89999999999999999987665554322 2345788999864
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=1.4e-12 Score=121.13 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=110.3
Q ss_pred EEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHH-HHHhhCCceeEEecCCCCCCCcccccccccCCCcE
Q 006588 392 RHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILE-ELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRY 470 (639)
Q Consensus 392 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 470 (639)
+.+.+.++.+..+|..+.. +|+.|.+.+|.+. .+++ ..+..+++|++|++++|.+.+..|..|.++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELG------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCC------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCC------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 4677777888888876654 8999988888753 3333 24788999999999999988877899999999999
Q ss_pred EeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccc
Q 006588 471 LNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMP 530 (639)
Q Consensus 471 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p 530 (639)
|+|++|.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999997765 48899999999999999878788889999999999999998765543
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=116.48 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=51.0
Q ss_pred CceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhhhhcccCceeec
Q 006588 442 TSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLN 520 (639)
Q Consensus 442 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 520 (639)
++|+.|++++|.+ ..+|..+.++++|+.|++++|.|+.++. .+..+++|+.|+|++|.+....|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 3555555555552 3444555555555555555555554432 3555555555555555533333334555555555555
Q ss_pred CCCCccccccccCCCCcCCcccc
Q 006588 521 RDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 521 ~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
++|.+....+..|..+++|++|+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCCeeChhhhhcCccccEEE
Confidence 55543322222344444555444
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.5e-12 Score=115.59 Aligned_cols=125 Identities=23% Similarity=0.228 Sum_probs=66.3
Q ss_pred CCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcc-cchhhhcCCC
Q 006588 412 KRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEK-LPEALCELYN 490 (639)
Q Consensus 412 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~ 490 (639)
++|+.|.+.+|.+.. +.+|. .+..+++|+.|++++|.+.+. ..++.+++|++|++++|.++. +|..+..+++
T Consensus 17 ~~l~~L~l~~n~l~~----~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNE----GKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBT----TBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCCh----hHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 455555555554320 22332 245556666666666664333 445556666666666666664 5555555666
Q ss_pred ccEEecCCCCCccc-cchhhhhcccCceeecCCCCcccccc---ccCCCCcCCcccc
Q 006588 491 LEKLDICSCSCLKE-LPEGIGKLINMKYLLNRDTDSVRYMP---VGIARLKSLRTLE 543 (639)
Q Consensus 491 L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~ 543 (639)
|++|++++|.+.+. .|..+..+++|++|++++|.+.+..+ ..++.+++|++|+
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 66666666663321 22455666666666666665433222 2455556666555
No 137
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.1e-11 Score=123.37 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=122.1
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCchHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDEFR 100 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ 100 (639)
.|....+++||+..++.|.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ..+++++..+..+...
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~ 88 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV 88 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH
Confidence 34444679999999999999997433 23399999999999999999987421 1111 2344454443322221
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHH--Hh
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESI--AS 177 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~--~~ 177 (639)
.+.++..+.... ..+ .+++.++|+||++.......+.+...+.....++.+|++|+.... ..
T Consensus 89 -i~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 89 -VRNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp -HHTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -HHHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhH
Confidence 122222211000 011 345889999999887655667777788777677888888876431 12
Q ss_pred hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHHHh
Q 006588 178 MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTMGG 238 (639)
Q Consensus 178 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 238 (639)
.......+++.+++.++..+++...+...+.... .+.+..+++.++|.|. ++..+..
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYT----NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2233458999999999999999887642221111 2336789999999995 4554433
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.24 E-value=3.9e-12 Score=140.23 Aligned_cols=155 Identities=17% Similarity=0.058 Sum_probs=66.4
Q ss_pred HhhCCceeEEecCCCCCC----CcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCc---cccchhhh
Q 006588 438 FRELTSLRALDFPSLYLP----SEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCL---KELPEGIG 510 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~---~~lp~~~~ 510 (639)
+..+++|+.|++++|.+. ..++..+.++++|+.|++++|.+..+|..+..+++|+.|+++.+... ...+..+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 344455555555554432 12233334445555555555554444444445555555555432211 11222334
Q ss_pred hcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCcc-CCcccccCCCcCCceeeeCcCCCCChhhhcc
Q 006588 511 KLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKA-CRLESLKNLEHLQICGIRGLGDVSDVGEAKR 589 (639)
Q Consensus 511 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 589 (639)
.+++|+.|+++++ ....+|..+..+++|++|++. .+.+..... ..+..+++|+.|++.++. ......
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls----~~~l~~~~~~~~~~~~~~L~~L~L~~~~-------~~~~l~ 335 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL----YALLETEDHCTLIQKCPNLEVLETRNVI-------GDRGLE 335 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET----TCCCCHHHHHHHHTTCTTCCEEEEEGGG-------HHHHHH
T ss_pred ccccccccCcccc-chhHHHHHHhhcCCCcEEecC----CCcCCHHHHHHHHHhCcCCCEEeccCcc-------CHHHHH
Confidence 4445555555443 233444444445555555421 111111111 223455555555554221 111122
Q ss_pred cccccccCcceEEEE
Q 006588 590 LELDKKKYLFSLTLK 604 (639)
Q Consensus 590 ~~l~~~~~L~~L~l~ 604 (639)
.....+++|++|+|+
T Consensus 336 ~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIE 350 (592)
T ss_dssp HHHHHCTTCCEEEEE
T ss_pred HHHHhCCCCCEEEee
Confidence 223456677777776
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.5e-11 Score=112.56 Aligned_cols=129 Identities=18% Similarity=0.241 Sum_probs=85.1
Q ss_pred EEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEE
Q 006588 392 RHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYL 471 (639)
Q Consensus 392 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 471 (639)
+.+.+.++.+..+|..+. ++|+.|.+.+|.+. .+++..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 345556666666664433 57777777766642 3344445677778888888777554445556777778888
Q ss_pred eccCCCCcccchh-hhcCCCccEEecCCCCCccccchh-hhhcccCceeecCCCCccccc
Q 006588 472 NLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEG-IGKLINMKYLLNRDTDSVRYM 529 (639)
Q Consensus 472 ~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~~~~ 529 (639)
++++|.++.+|.. +..+++|++|++++|.+. .+|.. +..+++|++|++++|.+.+..
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 8888877766654 567777888888777743 45544 466777888888777655443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=2.4e-11 Score=112.75 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=103.2
Q ss_pred EEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEE
Q 006588 392 RHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYL 471 (639)
Q Consensus 392 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 471 (639)
+.+.+.++.+..+|..+. ++|+.|.+.+|.+. .+|. .+..+++|+.|++++|.+.+..+..|.++++|+.|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~------~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT------LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC------SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc------hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 346666777788887654 68999988888853 4453 37889999999999999777777889999999999
Q ss_pred eccCCCCcccch-hhhcCCCccEEecCCCCCccccch-hhhhcccCceeecCCCCcc
Q 006588 472 NLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPE-GIGKLINMKYLLNRDTDSV 526 (639)
Q Consensus 472 ~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~~ 526 (639)
+|++|.++.+++ .+..+++|++|+|++|.+. .+|. .+..+++|+.|++++|++.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 999999997765 6899999999999999954 5554 5788999999999999764
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.6e-11 Score=112.17 Aligned_cols=127 Identities=20% Similarity=0.239 Sum_probs=59.7
Q ss_pred hCCceeEEecCCCCCCCcccccccccC-CCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhh-hhcccCce
Q 006588 440 ELTSLRALDFPSLYLPSEIPRNIKKLI-HLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGI-GKLINMKY 517 (639)
Q Consensus 440 ~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~ 517 (639)
.+.+|+.|++++|.+. .+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+. .+|..+ ..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 3455555555555533 3333 23332 555555555555554 34555555555555555532 333332 55555555
Q ss_pred eecCCCCccccccc--cCCCCcCCccccceEecCCCccCCCccC----CcccccCCCcCCceeee
Q 006588 518 LLNRDTDSVRYMPV--GIARLKSLRTLEEVRVSGRGCLDGRKAC----RLESLKNLEHLQICGIR 576 (639)
Q Consensus 518 L~l~~n~~~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~n~ 576 (639)
|++++|.+ ..+|. .+..+++|++|+ ..+|.+. .+|. .+..+++|+.|++..|.
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~----l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLC----ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEE----CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEE----ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555543 33333 333444444443 1122111 1122 24555566666665554
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.5e-11 Score=112.46 Aligned_cols=127 Identities=22% Similarity=0.233 Sum_probs=75.8
Q ss_pred ccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhh-h
Q 006588 408 TCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEAL-C 486 (639)
Q Consensus 408 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i-~ 486 (639)
+.++++|+.|.+.+|.+. .++ .+....++|++|++++|.+.+ + ..++.+++|++|++++|.++.+|+.+ .
T Consensus 15 ~~~~~~L~~L~l~~n~l~------~i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP------VIE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCCC------SCC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCCCc------hhH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhh
Confidence 445666666666666543 121 112223367777777776433 3 45666677777777777777666544 6
Q ss_pred cCCCccEEecCCCCCccccch--hhhhcccCceeecCCCCcccccccc----CCCCcCCccccce
Q 006588 487 ELYNLEKLDICSCSCLKELPE--GIGKLINMKYLLNRDTDSVRYMPVG----IARLKSLRTLEEV 545 (639)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~~~ 545 (639)
.+++|++|++++|. .+.+|. .+..+++|++|++++|.+ ..+|.. +..+++|+.|++.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCC
Confidence 67777777777766 355554 566667777777777754 344543 5666666666643
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=8e-14 Score=130.40 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=62.2
Q ss_pred cccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCccccccccCCCCcCCc
Q 006588 461 NIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLR 540 (639)
Q Consensus 461 ~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 540 (639)
.++.+++|++|++++|.++.+| .+..+++|++|++++|. ...+|..+..+++|++|++++|.+. .+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCC
Confidence 4445555555555555555544 44555555555555554 2344444444455555555555332 233 244444444
Q ss_pred cccceEecCCCccCCCcc-CCcccccCCCcCCceeeeCcCCCCCh---hhhcccccccccCcceEE
Q 006588 541 TLEEVRVSGRGCLDGRKA-CRLESLKNLEHLQICGIRGLGDVSDV---GEAKRLELDKKKYLFSLT 602 (639)
Q Consensus 541 ~L~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~~l~~~~~L~~L~ 602 (639)
+|++.+. .+....+ ..+..+++|+.|++.+|.+.+.++.. .......+..+++|+.|+
T Consensus 119 ~L~l~~N----~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNN----KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEE----ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCC----cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 4442211 1111111 23455666666666666543322210 122223356677777776
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.18 E-value=2.5e-12 Score=141.80 Aligned_cols=153 Identities=15% Similarity=0.044 Sum_probs=100.3
Q ss_pred CCceEEEEEEecccCc-----ccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccc
Q 006588 388 DEKVRHLMLIIGKEST-----FPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNI 462 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 462 (639)
.+.++.|.+..+.+.. ++.....+++|+.|.+.++.+... .....+.++..+++|+.|++++|.+ ..+|..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~ 239 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEI-LELVGFF 239 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC--CHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc--CHHHHHHHHhhCCCCcEEeccCccH-HHHHHHH
Confidence 4678888888876522 333446788999998887765311 2233455578899999999999984 4578888
Q ss_pred cccCCCcEEeccCCCCc----ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccc-ccCCCCc
Q 006588 463 KKLIHLRYLNLSGQKIE----KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMP-VGIARLK 537 (639)
Q Consensus 463 ~~l~~L~~L~l~~~~l~----~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~ 537 (639)
.++++|+.|+++++... ..+..+..+++|+.|+++.+. ...+|..+..+++|++|++++|.+....+ ..+..++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 99999999999854321 333455566677777776654 45566666667777777777765332222 2245556
Q ss_pred CCccccc
Q 006588 538 SLRTLEE 544 (639)
Q Consensus 538 ~L~~L~~ 544 (639)
+|++|++
T Consensus 319 ~L~~L~L 325 (592)
T 3ogk_B 319 NLEVLET 325 (592)
T ss_dssp TCCEEEE
T ss_pred CCCEEec
Confidence 6666653
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=1.1e-10 Score=106.79 Aligned_cols=84 Identities=25% Similarity=0.202 Sum_probs=41.2
Q ss_pred CceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchh-hhcCCCccEEecCCCCCccccchhhhhcccCceeec
Q 006588 442 TSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLN 520 (639)
Q Consensus 442 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 520 (639)
++|+.|++++|.+.+..+..+.++++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4555555555554333333445555555555555555544432 345555555555555533222222445555555555
Q ss_pred CCCCc
Q 006588 521 RDTDS 525 (639)
Q Consensus 521 ~~n~~ 525 (639)
++|.+
T Consensus 108 ~~N~l 112 (177)
T 2o6r_A 108 DTNQL 112 (177)
T ss_dssp CSSCC
T ss_pred cCCcc
Confidence 55543
No 146
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.16 E-value=5.2e-10 Score=110.62 Aligned_cols=175 Identities=10% Similarity=-0.024 Sum_probs=113.5
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-----CCceEEEEeCCCCchHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-----FDKILWVCVSETFDEFR 100 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~ 100 (639)
+..+.||++|++++...|...-. ....+.+.|+|++|+|||++++.+++....... --..+++++....+...
T Consensus 19 ~~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 19 RELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred ccccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 33489999999999988877654 557789999999999999999999985432211 12467888888889999
Q ss_pred HHHHHHHHccCCCCC-cccHHHHHHHHHHh--cCCceEEEEEeCCCCCCccCchhhhHhhhc--C-CCCcEEEEEccchH
Q 006588 101 IAKAMLEALTGSTSN-LDALQSLLISIDES--IAGKRFLLVLDDVWDGDYIKWEPFYHCLKK--G-LHGSKILITTRNES 174 (639)
Q Consensus 101 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~--l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~--~-~~~~~ilvTsr~~~ 174 (639)
++..|++++...... ....+.+...+... -.+++++++||+++... ..+.+..++.+ . .....+|.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999654311 12233333333322 24678999999998865 22334434332 2 22233444454321
Q ss_pred -----HHhhh-cc--cceEECCCCCHHHHHHHHHHHhh
Q 006588 175 -----IASMM-RS--TDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 175 -----~~~~~-~~--~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
+.... .. ...+.+.+++.++..+++..++.
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 11111 11 25799999999999999988764
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=1.2e-11 Score=136.38 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=94.5
Q ss_pred CCceEEEEEEecccCc-cccccc-CCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccc---
Q 006588 388 DEKVRHLMLIIGKEST-FPISTC-RTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNI--- 462 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~--- 462 (639)
...++.+.+.++.+.. .+..+. .+++|+.|.+.+|.. +.....+.+...+++|++|++++|.+....+..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 3578888888886643 223343 588999998887731 1333355556789999999999998654433333
Q ss_pred -cccCCCcEEeccCCC--Cc--ccchhhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCC
Q 006588 463 -KKLIHLRYLNLSGQK--IE--KLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDT 523 (639)
Q Consensus 463 -~~l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n 523 (639)
..+++|+.|++++|. ++ .++..+..+++|+.|++++|.....+|..+..+++|+.|+++.+
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 367799999999987 33 33333456899999999998656668888888999999987655
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2.6e-13 Score=126.85 Aligned_cols=125 Identities=23% Similarity=0.275 Sum_probs=83.5
Q ss_pred HhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchhhhhcccCce
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEGIGKLINMKY 517 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 517 (639)
+..+++|++|++++|.+.+ +| .+.++++|++|++++|.++.+|..+..+++|++|++++|. ...+| .+..+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCCCE
Confidence 6677777777777777433 56 6777777777777777777777767777777777777776 34455 4777777777
Q ss_pred eecCCCCcccccc--ccCCCCcCCccccceEecCCCccCCCccCC----------cccccCCCcCC
Q 006588 518 LLNRDTDSVRYMP--VGIARLKSLRTLEEVRVSGRGCLDGRKACR----------LESLKNLEHLQ 571 (639)
Q Consensus 518 L~l~~n~~~~~~p--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~----------~~~l~~L~~L~ 571 (639)
|++++|.+. .+| ..+..+++|++|+ ..+|.+.+..|.. +..+++|+.|+
T Consensus 120 L~l~~N~i~-~~~~~~~l~~l~~L~~L~----l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKIT-NWGEIDKLAALDKLEDLL----LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEESEEECC-CHHHHHHHTTTTTCSEEE----ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EECCCCcCC-chhHHHHHhcCCCCCEEE----ecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777777643 323 2466667777776 3334344433432 67778888776
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=2.3e-10 Score=115.88 Aligned_cols=191 Identities=13% Similarity=0.043 Sum_probs=121.1
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCch
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDE 98 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~ 98 (639)
-.|..-.+++|+++.++.+.+++.... ...+.|+|++|+|||++|+.+++. ..... ...+.+++.+....
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch
Confidence 344455679999999999999997542 334999999999999999999874 22111 12334443322111
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHH--H
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESI--A 176 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~--~ 176 (639)
.. ....+..+... .....+++.++|+|+++.........+...+.....++++|+||..... .
T Consensus 91 ~~-~~~~~~~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 91 NV-IREKVKEFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp HT-THHHHHHHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred HH-HHHHHHHHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCH
Confidence 11 11111110000 0011256789999999887655667777777777777888888875431 1
Q ss_pred hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHh
Q 006588 177 SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGG 238 (639)
Q Consensus 177 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 238 (639)
........+.+.+++.++..+++...+...+.... .+.++.+++.++|.|..+.....
T Consensus 156 ~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 156 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT----EEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEEC----HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHCCCCHHHHHHHHH
Confidence 11223448899999999999999887754333222 23467889999999986544433
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.12 E-value=7.4e-10 Score=114.37 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=120.3
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
...+++||+.+++.|.+.+.... ..+.+.|+|++|+|||++|+.+++.. ..... ... ..+.....+..
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l--~~~~~-~~~----~~~~~~~~~~~ 81 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL--NCETG-ITA----TPCGVCDNCRE 81 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHH--SCTTC-SCS----SCCSSSHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHh--CCCCC-CCC----CCCcccHHHHH
Confidence 44569999999999999997543 34678999999999999999887632 11110 000 00011111111
Q ss_pred HHHHcc-------CC-CCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-
Q 006588 105 MLEALT-------GS-TSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES- 174 (639)
Q Consensus 105 il~~l~-------~~-~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~- 174 (639)
+...-. .. ........+....+... ..+++.++|+|+++.......+.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 111000 00 01112233333322211 135678999999988766667778888877766777777776432
Q ss_pred H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHH
Q 006588 175 I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMG 237 (639)
Q Consensus 175 ~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 237 (639)
+ .........+++.+++.++..+++...+...+.... .+.+..+++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~----~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE----PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC----HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHCCCCHHHHHHHH
Confidence 1 122233568999999999999999876632222111 2336789999999998776554
No 151
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.07 E-value=4.7e-10 Score=113.43 Aligned_cols=185 Identities=17% Similarity=0.126 Sum_probs=115.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
....+|+|++..++++.+.+...... ......+.|+|++|+|||++|+.+++. .. ...+++++.......+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~---~~~~~~~~~~~~~~~~--- 79 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LG---VNLRVTSGPAIEKPGD--- 79 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HT---CCEEEECTTTCCSHHH---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEeccccCChHH---
Confidence 34567999999999999888643210 123467999999999999999998773 22 2344555443322211
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC------------------CCcE
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL------------------HGSK 165 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~------------------~~~~ 165 (639)
....+... ..++.+|+||+++.........+...+.... +...
T Consensus 80 ------------------l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 80 ------------------LAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ------------------HHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ------------------HHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11122111 1345689999998875444455555554321 2355
Q ss_pred EEEEccchH-HHh-hhccc-ceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHhhh
Q 006588 166 ILITTRNES-IAS-MMRST-DVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGGLM 240 (639)
Q Consensus 166 ilvTsr~~~-~~~-~~~~~-~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 240 (639)
+|.||.... +.. ..... ..+.+..++.++..+++...+........ .+.++.+++.+.|+|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT----EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666665432 111 11222 58999999999999999887754332211 2346889999999998887766554
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.04 E-value=1e-09 Score=110.61 Aligned_cols=185 Identities=12% Similarity=0.040 Sum_probs=118.0
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCchHHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDEFRI 101 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~ 101 (639)
|..-.+++|++..++.+.+++... ....+.|+|++|+|||++|+.+++... ...+ ...+.+++....+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-- 83 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID-- 83 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT--
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH--
Confidence 334456999999999999988743 223399999999999999999887421 1111 123445544321111
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHh--c-CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-H
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDES--I-AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-A 176 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~ 176 (639)
............ + .+++.++|+|+++.......+.+...+.....++.+|+||.... + .
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 84 ----------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE 147 (319)
T ss_dssp ----------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCH
T ss_pred ----------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcch
Confidence 111111111111 1 25678999999988765555667777776666778888876543 1 1
Q ss_pred hhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 177 SMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 177 ~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
........+++.+++.++..+++...+...+.... .+.+..+++.++|.+..+...
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKIT----EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBC----HHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 22233458999999999999999887754433222 233678889999999765443
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.98 E-value=3.7e-09 Score=97.75 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=88.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh-----cCCceEEEEeCCCCc
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR-----QFDKILWVCVSETFD 97 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~ 97 (639)
+.....++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++...... ....++++++...
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 89 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-- 89 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH--
T ss_pred hccccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH--
Confidence 445567999999999999999742 456789999999999999999987421100 1223445543211
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHH-h-cCCceEEEEEeCCCCCC-------ccCchhhhHhhhcCCCCcEEEE
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDE-S-IAGKRFLLVLDDVWDGD-------YIKWEPFYHCLKKGLHGSKILI 168 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~-l~~~~~LlvlDd~~~~~-------~~~~~~l~~~l~~~~~~~~ilv 168 (639)
... .............+.. . -.+++.+|||||++... ......++..+.... +..+|+
T Consensus 90 -----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~i~ 156 (195)
T 1jbk_A 90 -----------VAG-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVG 156 (195)
T ss_dssp -----------HTT-TCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT-SCCEEE
T ss_pred -----------hcc-CCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-CeEEEE
Confidence 000 0000111111111111 1 14568899999997753 122223322222322 345666
Q ss_pred EccchHHH-------hhhcccceEECCCCCHHHHHHHH
Q 006588 169 TTRNESIA-------SMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 169 Tsr~~~~~-------~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
||...... ........+.+..++.++..+++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 66654321 12233447899999998887654
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=1.3e-09 Score=98.69 Aligned_cols=98 Identities=22% Similarity=0.194 Sum_probs=69.9
Q ss_pred ceeEEecCCCCCCCcccccccccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchhhhhcccCceeecC
Q 006588 443 SLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNR 521 (639)
Q Consensus 443 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 521 (639)
..+.+++++|. ...+|..+. .+|++|+|++|.|+.+ |..+..+++|++|+|++|.+.+..|..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCC-cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45678888888 455666553 6788888888888876 4567888888888888888443333345788888888888
Q ss_pred CCCccccccccCCCCcCCcccc
Q 006588 522 DTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 522 ~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
+|.+.+..|..|..+++|++|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCccCEeCHHHhcCCCCCCEEE
Confidence 8875544444567777777776
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=7.8e-10 Score=100.56 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=74.0
Q ss_pred cEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchh-hhcCCCccE
Q 006588 415 RSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEA-LCELYNLEK 493 (639)
Q Consensus 415 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~ 493 (639)
+.+++.++.+ +.+|..+ ..+|+.|++++|.+.+..|..|.++++|++|+|++|.|+.+|.. +..+++|++
T Consensus 15 ~~l~~~~n~l------~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRL------ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCC------SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCC------CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 4565555553 2444432 36788888888887666677788888888888888888888765 478888888
Q ss_pred EecCCCCCccccchh-hhhcccCceeecCCCCcc
Q 006588 494 LDICSCSCLKELPEG-IGKLINMKYLLNRDTDSV 526 (639)
Q Consensus 494 L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~n~~~ 526 (639)
|+|++|.+ ..+|.. +..+++|++|++++|.+.
T Consensus 86 L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCC-CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCcc-ceeCHHHhccccCCCEEEeCCCCcc
Confidence 88888874 455544 778888888888888643
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=1.1e-08 Score=104.66 Aligned_cols=198 Identities=11% Similarity=0.045 Sum_probs=120.3
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCCchHH
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETFDEFR 100 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ 100 (639)
.|..-.+++|+++.++.+..++.... ...+.|+|++|+|||++|+.+++.......+ ..++.+++.+......
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI 105 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH
Confidence 34445679999999999999997443 2338999999999999999998853212112 2344455444323222
Q ss_pred HHHHHHHHccCC-CCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-Hh
Q 006588 101 IAKAMLEALTGS-TSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-AS 177 (639)
Q Consensus 101 ~~~~il~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~ 177 (639)
+.+....+... ....... .....-..++-++++|+++.........+...+.......++|+++.... + ..
T Consensus 106 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 106 -VREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp -HTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -HHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcch
Confidence 22222222110 0000000 00111124567999999987765555667777777666677777775432 1 11
Q ss_pred hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHH
Q 006588 178 MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKT 235 (639)
Q Consensus 178 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 235 (639)
.......+.+.+++.++..+++...+........ .+.++.|++.++|.|..+..
T Consensus 180 l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 180 LASQCSKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHH
T ss_pred hhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 1223458899999999999999887653332211 23478899999999986443
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=2.1e-09 Score=97.64 Aligned_cols=96 Identities=25% Similarity=0.310 Sum_probs=70.1
Q ss_pred eeEEecCCCCCCCcccccccccCCCcEEeccCCCCccc-chhhhcCCCccEEecCCCCCccccchh-hhhcccCceeecC
Q 006588 444 LRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKL-PEALCELYNLEKLDICSCSCLKELPEG-IGKLINMKYLLNR 521 (639)
Q Consensus 444 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~ 521 (639)
-+.+++++|. .+.+|..+. .+|++|+|++|.++.+ |..+..+++|++|+|++|. +..+|.. +.++++|++|+++
T Consensus 14 ~~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 3678888888 466776553 6788888888888876 4567888888888888887 4445554 5788888888888
Q ss_pred CCCccccccccCCCCcCCcccc
Q 006588 522 DTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 522 ~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
+|.+....+..|..+++|++|+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCccceeCHHHhccccCCCEEE
Confidence 8875433333367777777776
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=4.5e-09 Score=95.11 Aligned_cols=107 Identities=12% Similarity=0.105 Sum_probs=84.9
Q ss_pred CccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchh-hhcCCCc
Q 006588 413 RIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEA-LCELYNL 491 (639)
Q Consensus 413 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L 491 (639)
..+.+++.++.+ ..+|..+ .++|+.|++++|.+.+..|..|.++++|++|+|++|.|+.+|.. +..+++|
T Consensus 10 ~~~~l~~s~n~l------~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 10 SGTTVDCSGKSL------ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp ETTEEECTTSCC------SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEeCCCCc------CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 346787777764 2455432 47899999999997777788899999999999999999988875 5899999
Q ss_pred cEEecCCCCCccccchhhhhcccCceeecCCCCcccc
Q 006588 492 EKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRY 528 (639)
Q Consensus 492 ~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~ 528 (639)
++|+|++|.+.+..|..+..+++|++|++++|++...
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999985543344588999999999999976433
No 159
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.92 E-value=4.4e-09 Score=101.15 Aligned_cols=177 Identities=14% Similarity=0.107 Sum_probs=106.7
Q ss_pred CCCCcccch---hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 25 DEEEICGRV---GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 25 ~~~~~vgR~---~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
.-.+|+|++ ..+..+..+.... ..+.+.|+|++|+|||++|+.+++. .......+.|+++......
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--- 94 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--- 94 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---
Confidence 445688743 6677777776532 4578999999999999999999883 4444456777776542111
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC--chhhhHhhhcC-CCC-cEEEEEccchH---
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK--WEPFYHCLKKG-LHG-SKILITTRNES--- 174 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~--~~~l~~~l~~~-~~~-~~ilvTsr~~~--- 174 (639)
+. . .+ ..+ .++.+||+||++...... ...+...+... ..+ ..+|+||+...
T Consensus 95 -------~~------~-------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 -------ST------A-------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -------CG------G-------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred -------HH------H-------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 00 0 00 011 345689999998764333 33344443322 122 24777776321
Q ss_pred ------HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHh
Q 006588 175 ------IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGG 238 (639)
Q Consensus 175 ------~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 238 (639)
+...+.....+++.+++.++..+++...+........ .+.++.+++.++|.+..+..+..
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP----EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC----HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHccCCHHHHHHHHH
Confidence 1111112268999999999999999887643222111 23467888999999876655543
No 160
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.90 E-value=1.1e-10 Score=128.53 Aligned_cols=209 Identities=15% Similarity=0.090 Sum_probs=111.0
Q ss_pred CCceEEEEEEecccCc-----ccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccc
Q 006588 388 DEKVRHLMLIIGKEST-----FPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNI 462 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 462 (639)
.+.++.|.+..+.+.. ++.....+++|+.|.+.++. ..+.......++..+++|++|++++|...+.+|..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 3567777776665422 33334467788888777664 122334445555667888888888875444466666
Q ss_pred cccCCCcEEeccCCC-------C------------------------cccchhhhcCCCccEEecCCCCCccc-cchhhh
Q 006588 463 KKLIHLRYLNLSGQK-------I------------------------EKLPEALCELYNLEKLDICSCSCLKE-LPEGIG 510 (639)
Q Consensus 463 ~~l~~L~~L~l~~~~-------l------------------------~~lp~~i~~l~~L~~L~l~~~~~~~~-lp~~~~ 510 (639)
..+++|+.|+++.+. + ..+|..+..+++|+.|++++|.+... ++..+.
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh
Confidence 777777777754442 1 12333334566677777776663322 222244
Q ss_pred hcccCceeecCCCCccc-cccccCCCCcCCccccceEe-----cCCCccCCCccCCc-ccccCCCcCCceeeeCcCCCCC
Q 006588 511 KLINMKYLLNRDTDSVR-YMPVGIARLKSLRTLEEVRV-----SGRGCLDGRKACRL-ESLKNLEHLQICGIRGLGDVSD 583 (639)
Q Consensus 511 ~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~~~~~-----~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 583 (639)
.+++|+.|++++| +.. .++.....+++|++|++..+ ...+.++......+ ..+++|+.|.+.+|.+..
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~---- 386 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN---- 386 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH----
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH----
Confidence 6667777777666 222 12222234566666654321 11111111111122 236777777555554321
Q ss_pred hhhhcccccccccCcceEEEEec
Q 006588 584 VGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 584 ~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
.........+++|+.|+|+++
T Consensus 387 --~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 387 --AALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp --HHHHHHHHHCTTCCEEEEEES
T ss_pred --HHHHHHHhhCCCcceeEeecc
Confidence 111111235788889998843
No 161
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=2.3e-09 Score=108.51 Aligned_cols=216 Identities=12% Similarity=0.019 Sum_probs=117.9
Q ss_pred CCceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhh--------CCceeEEecCCCCCCCccc
Q 006588 388 DEKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRE--------LTSLRALDFPSLYLPSEIP 459 (639)
Q Consensus 388 ~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~p 459 (639)
..+++.|++.++.+..+......++.+..+.+..+. +|+..|.+ |.+|+.++++. .+...-+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---------I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---------VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---------ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc---------cCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence 367888888888776222112222223334333332 23333445 66666666666 4233333
Q ss_pred ccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCC--------------------------ccccchh----
Q 006588 460 RNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSC--------------------------LKELPEG---- 508 (639)
Q Consensus 460 ~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~--------------------------~~~lp~~---- 508 (639)
..|.+|.+|+.|++++|.+..+++ .|....++..+.+..+.. .+.+|..
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 456666667766666666554433 334444444444332100 0001110
Q ss_pred -----------------------h-hhcccCceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccc
Q 006588 509 -----------------------I-GKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESL 564 (639)
Q Consensus 509 -----------------------~-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l 564 (639)
+ ..+++|+.+++++|.+...-+..|..+.+|++|. ...+ +....+..|.++
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~----l~~n-i~~I~~~aF~~~ 272 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK----LPHN-LKTIGQRVFSNC 272 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE----CCTT-CCEECTTTTTTC
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE----CCcc-cceehHHHhhCC
Confidence 1 1367889999988864433334578888888887 3333 444456678888
Q ss_pred cCCC-cCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCccee
Q 006588 565 KNLE-HLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKELA 638 (639)
Q Consensus 565 ~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 638 (639)
++|+ .+.+.+ . ...+ ....|.+|.+|+.|+++.+.+..++ ......+++|+.|.
T Consensus 273 ~~L~~~l~l~~-~-l~~I------~~~aF~~c~~L~~l~l~~n~i~~I~------------~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 273 GRLAGTLELPA-S-VTAI------EFGAFMGCDNLRYVLATGDKITTLG------------DELFGNGVPSKLIY 327 (329)
T ss_dssp TTCCEEEEECT-T-CCEE------CTTTTTTCTTEEEEEECSSCCCEEC------------TTTTCTTCCCCEEE
T ss_pred hhccEEEEEcc-c-ceEE------chhhhhCCccCCEEEeCCCccCccc------------hhhhcCCcchhhhc
Confidence 8888 887755 2 1222 2235888889999998777654311 23345566776653
No 162
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.82 E-value=1.3e-07 Score=95.89 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=113.2
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
.-.|..-.+++|++..++++..++...... .+....|.|+|++|+|||++|+.+++. ... ..+.+++.....
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~ia~~--~~~---~~~~~~~~~~~~-- 93 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR-NECLDHILFSGPAGLGKTTLANIISYE--MSA---NIKTTAAPMIEK-- 93 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-TSCCCCEEEECSTTSSHHHHHHHHHHH--TTC---CEEEEEGGGCCS--
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECcCCCCHHHHHHHHHHH--hCC---CeEEecchhccc--
Confidence 334445567999999999999998754210 124457999999999999999998662 221 233344432211
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC------------------
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL------------------ 161 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~------------------ 161 (639)
.......+.. ..++.+|+||+++.........+...+....
T Consensus 94 -------------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 94 -------------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp -------------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred -------------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 1111111211 2356799999998775444555555554432
Q ss_pred CCcEEEEEccchHH-H-hhhcc-cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHHHh
Q 006588 162 HGSKILITTRNESI-A-SMMRS-TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTMGG 238 (639)
Q Consensus 162 ~~~~ilvTsr~~~~-~-~~~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 238 (639)
++..+|.+|..... . ..... ...+.+..++.++...++...+........ .+.++.+++.+.|+|-.+..+..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~----~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE----EKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC----HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHCcCHHHHHHHHH
Confidence 12456666654321 1 11122 358999999999999999887653332211 23367888899999966554443
No 163
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=4.5e-09 Score=106.40 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=116.9
Q ss_pred CCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCC-------c----
Q 006588 411 TKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKI-------E---- 479 (639)
Q Consensus 411 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l-------~---- 479 (639)
|++|+.+.+.. . ...+++..|.+|.+|+.+++++|.+....+..|.++.++..+.+..+.. .
T Consensus 100 ~~~L~~l~L~~-~------i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE-K------IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CTTCCC-CBCT-T------CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cCCCcEEECCc-c------ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 89999997766 3 3356666688999999999999986555566777777777776655211 0
Q ss_pred ----------------ccchh---------------------------h-hcCCCccEEecCCCCCccccch-hhhhccc
Q 006588 480 ----------------KLPEA---------------------------L-CELYNLEKLDICSCSCLKELPE-GIGKLIN 514 (639)
Q Consensus 480 ----------------~lp~~---------------------------i-~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 514 (639)
.++.. + ..+++|+.+++++|+ +..+|. .|.++++
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKY 251 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTT
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCC
Confidence 00000 0 127889999999888 555654 4788999
Q ss_pred CceeecCCCCccccccccCCCCcCCc-cccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccc
Q 006588 515 MKYLLNRDTDSVRYMPVGIARLKSLR-TLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELD 593 (639)
Q Consensus 515 L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~ 593 (639)
|+.+++.+| +...-+..|..+.+|+ .+.+ .. .+....+..|.++++|+.+++..|.+.. .....|.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l----~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-------I~~~aF~ 318 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL----PA-SVTAIEFGAFMGCDNLRYVLATGDKITT-------LGDELFG 318 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEE----CT-TCCEECTTTTTTCTTEEEEEECSSCCCE-------ECTTTTC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEE----cc-cceEEchhhhhCCccCCEEEeCCCccCc-------cchhhhc
Confidence 999999988 4444445688888888 7763 22 2334446788999999999987776422 2223588
Q ss_pred cccCcceEE
Q 006588 594 KKKYLFSLT 602 (639)
Q Consensus 594 ~~~~L~~L~ 602 (639)
+|++|+.|.
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 888998875
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=1.6e-08 Score=108.48 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=113.5
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCc-----------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEE
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSE-----------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWV 90 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~-----------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 90 (639)
.|..-.+++|+++.+++|.+++...... ..+..+.+.|+|++|+|||++|+.+++. .. ..++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~---~~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG---YDILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT---CEEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC---CCEEEE
Confidence 3444467999999999999999752210 0124578999999999999999998773 21 234555
Q ss_pred EeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC---chhhhHhhhcCCCCcEEE
Q 006588 91 CVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK---WEPFYHCLKKGLHGSKIL 167 (639)
Q Consensus 91 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~---~~~l~~~l~~~~~~~~il 167 (639)
++....... .....+........-..-...... ......++.+||+|+++...... +..+...+... +..||
T Consensus 109 n~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iI 183 (516)
T 1sxj_A 109 NASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLI 183 (516)
T ss_dssp CTTSCCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEE
T ss_pred eCCCcchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEE
Confidence 555544433 222222221110000000000000 00123568899999998754332 24455555443 23355
Q ss_pred EEccchH---HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch-hHHHHH
Q 006588 168 ITTRNES---IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP-LAAKTM 236 (639)
Q Consensus 168 vTsr~~~---~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 236 (639)
+++.... +.........+.+..++.++..+++...+......... +.+..|++.++|.+ -++..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~----~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP----NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT----THHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHcCCcHHHHHHHH
Confidence 5544321 22333345589999999999999987766432221111 22678899999955 445444
No 165
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2.1e-08 Score=102.50 Aligned_cols=198 Identities=15% Similarity=0.075 Sum_probs=113.0
Q ss_pred ccCCCCcccchhhHHHHHHHH-hccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCce--------------
Q 006588 23 LIDEEEICGRVGERNALVSML-LCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKI-------------- 87 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L-~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~-------------- 87 (639)
|..-.+++|++..++.+.+++ .... ... +.|+|++|+||||+|+.++.. ......+.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~--l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLES--IFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHH--HSCTTCCC--------------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHH--HcCCCCCeEEecceeecccccc
Confidence 344467999999999999888 4322 334 999999999999999887662 11111111
Q ss_pred ------------EEEEeCCCC-chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhh
Q 006588 88 ------------LWVCVSETF-DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFY 154 (639)
Q Consensus 88 ------------~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~ 154 (639)
+.++..... ......++++..+..... ..... .+. .+..++-++|+|+++..+....+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~ 155 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALR 155 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHH
Confidence 111111000 000011222222211100 00000 000 01336679999999887666667788
Q ss_pred HhhhcCCCCcEEEEEccchH-H-HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 155 HCLKKGLHGSKILITTRNES-I-ASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 155 ~~l~~~~~~~~ilvTsr~~~-~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
..+.....++.+|++|.... + .........+++.+++.++..+++...+...+..... .+.+..|++.++|.+..
T Consensus 156 ~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~ 232 (354)
T 1sxj_E 156 RTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRV 232 (354)
T ss_dssp HHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHH
Confidence 88877666778888887532 1 1222344689999999999999998876432221110 12367888999999875
Q ss_pred HHHHH
Q 006588 233 AKTMG 237 (639)
Q Consensus 233 l~~~~ 237 (639)
+..+.
T Consensus 233 a~~~l 237 (354)
T 1sxj_E 233 SLLML 237 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 166
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.74 E-value=2.9e-07 Score=89.57 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=104.4
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcC------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQ------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
..-.+++|.++..+++.+.+....... .+..+.+.|+|++|+|||++|+.+++. .. ...+.+++....+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~---~~~~~~~~~~~~~ 77 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQ---VPFLAMAGAEFVE 77 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HT---CCEEEEETTTTSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEechHHHHh
Confidence 445678999999888877654221100 134567899999999999999999773 32 2344455543211
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC------------ccCc---hhhhHhhhcC--
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD------------YIKW---EPFYHCLKKG-- 160 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~------------~~~~---~~l~~~l~~~-- 160 (639)
. .. ..........+.......+.+|+||+++... .... ..+...+...
T Consensus 78 ~--------------~~-~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 V--------------IG-GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp S--------------ST-THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred h--------------cc-ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 00 1111122222333333467999999997641 1111 2233333322
Q ss_pred CCCcEEEEEccchHHH-hh-hc---ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHH
Q 006588 161 LHGSKILITTRNESIA-SM-MR---STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAK 234 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~~-~~-~~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~ 234 (639)
..+..+|.||...... .. .. ....+.+...+.++..+++...+........ .......+++.+.|++- .|.
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS---STFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBT---HHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHCCCCCHHHHH
Confidence 2345566666554321 11 11 2357889999999999999887643332211 11124678888888754 454
Q ss_pred HHHh
Q 006588 235 TMGG 238 (639)
Q Consensus 235 ~~~~ 238 (639)
.+..
T Consensus 220 ~l~~ 223 (262)
T 2qz4_A 220 NICN 223 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 167
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.72 E-value=1.2e-07 Score=93.68 Aligned_cols=190 Identities=16% Similarity=0.099 Sum_probs=106.0
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
.....+++|.++.+++|.+.+.....+ .....+.+.|+|++|+|||+||+.+++. ... ..+.+++...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~---~~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNA---TFIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTC---EEEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCC---CEEEEehHHH
Confidence 344567999999999999988543100 0024567999999999999999998773 222 2333333221
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCC-----------CccCchhhhHhh---h--c
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDG-----------DYIKWEPFYHCL---K--K 159 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-----------~~~~~~~l~~~l---~--~ 159 (639)
..... ..........+.......+.+|+||+++.. .......+...+ . .
T Consensus 88 --------------~~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 --------------VKKFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp --------------CCCST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred --------------HHhcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 11010 011112222222333456789999999642 101112222222 2 1
Q ss_pred CCCCcEEEEEccchHHHh--hh---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCC-chhHH
Q 006588 160 GLHGSKILITTRNESIAS--MM---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAA 233 (639)
Q Consensus 160 ~~~~~~ilvTsr~~~~~~--~~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal 233 (639)
...+..||.||....... .. .....+.+...+.++..+++........... ... ...+++.+.| .|-.+
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE-DVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT-TCC----HHHHHHHCTTCCHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC-cCC----HHHHHHHcCCCCHHHH
Confidence 233566777777543211 11 2234789999999999999988764333211 111 4667777777 45455
Q ss_pred HHHH
Q 006588 234 KTMG 237 (639)
Q Consensus 234 ~~~~ 237 (639)
..+.
T Consensus 228 ~~l~ 231 (285)
T 3h4m_A 228 KAIC 231 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 168
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.72 E-value=6.3e-08 Score=97.64 Aligned_cols=183 Identities=17% Similarity=0.158 Sum_probs=110.0
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
-.|..-.+++|+++.++.+.+++.... ....+.++|++|+|||++|+.+++. .. ..++.++++... .+
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~~--~~ 87 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDCK--ID 87 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTCC--HH
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccccC--HH
Confidence 344556779999999999999998443 4567889999999999999998763 22 234555544321 22
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC-ccCchhhhHhhhcCCCCcEEEEEccchH-HH-h
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD-YIKWEPFYHCLKKGLHGSKILITTRNES-IA-S 177 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~-~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~~-~ 177 (639)
..+..+..+.... ...+++.++|+|+++... ....+.+...+.....++.+|+||.... +. .
T Consensus 88 ~i~~~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~ 152 (324)
T 3u61_B 88 FVRGPLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKP 152 (324)
T ss_dssp HHHTHHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred HHHHHHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHH
Confidence 2222222111000 012467899999998775 4445566666665555677888887543 11 1
Q ss_pred hhcccceEECCCCCHHHHHHHHHH-------HhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 178 MMRSTDVISIKELAEEECWALFKQ-------LAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 178 ~~~~~~~~~l~~l~~~ea~~l~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
.......+++..++.++..+++.. .+......... .+.++.+++.++|.+..+
T Consensus 153 l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 153 LQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHH
T ss_pred HHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHH
Confidence 112345899999998885443322 22111111111 134677888888877643
No 169
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.72 E-value=2.6e-07 Score=94.97 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=110.3
Q ss_pred CCCcccchhhHHHH---HHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC----CCCch
Q 006588 26 EEEICGRVGERNAL---VSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS----ETFDE 98 (639)
Q Consensus 26 ~~~~vgR~~~~~~l---~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~----~~~~~ 98 (639)
..+|||++...+.+ .+.+.... ...+.+.|+|++|+|||++|+.+++. ..... ..+.+++. .....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccch
Confidence 55799999997774 44444332 13468999999999999999999873 32211 22223321 12233
Q ss_pred HHHHHHHHHHccCC----------------------------CCC--cccHHHHHHHHHHhc-----CCc----eEEEEE
Q 006588 99 FRIAKAMLEALTGS----------------------------TSN--LDALQSLLISIDESI-----AGK----RFLLVL 139 (639)
Q Consensus 99 ~~~~~~il~~l~~~----------------------------~~~--~~~~~~~~~~l~~~l-----~~~----~~Llvl 139 (639)
.+...+........ ..+ ..........+.... .++ +.+|+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 34444333331100 000 000112222221111 122 469999
Q ss_pred eCCCCCCccCchhhhHhhhcCCCCcEEEEEccc------------h-HH-HhhhcccceEECCCCCHHHHHHHHHHHhhC
Q 006588 140 DDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN------------E-SI-ASMMRSTDVISIKELAEEECWALFKQLAFF 205 (639)
Q Consensus 140 Dd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~------------~-~~-~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~ 205 (639)
|+++.........+...+....... +++++.. . .+ .........+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 9998876555566666665554443 4444431 1 11 122233456899999999999999887653
Q ss_pred CCCchhhhHHHHHHHHHHHHcC-CchhHHHHHH
Q 006588 206 GRSTEECEKLEQIGQRIARKCK-GLPLAAKTMG 237 (639)
Q Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~ 237 (639)
...... .+.++.+++.+. |.|..+..+.
T Consensus 275 ~~~~~~----~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDVEMS----EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTCCBC----HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCCCCC----HHHHHHHHHHhcCCCHHHHHHHH
Confidence 332211 233677888887 7776555443
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=1.2e-07 Score=99.19 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=107.8
Q ss_pred ccCCCCcccchhhH---HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH
Q 006588 23 LIDEEEICGRVGER---NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF 99 (639)
Q Consensus 23 ~~~~~~~vgR~~~~---~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 99 (639)
|..-.++||.+..+ ..|...+... ....+.|+|++|+||||+|+.+++. ....| +.+++.. ....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f---~~l~a~~-~~~~ 89 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV---ERISAVT-SGVK 89 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE---EEEETTT-CCHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEEecc-CCHH
Confidence 44556799999998 7888888743 3478999999999999999988773 22222 2222211 1111
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEE-EccchH--H-
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILI-TTRNES--I- 175 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilv-Tsr~~~--~- 175 (639)
+ .+.++... ......+++.+|+||+++.......+.++..+... ...+|. ||.+.. +
T Consensus 90 ~-ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 90 E-IREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELN 150 (447)
T ss_dssp H-HHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSC
T ss_pred H-HHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccC
Confidence 1 11111110 01112457889999999987666667777777762 234444 443332 1
Q ss_pred HhhhcccceEECCCCCHHHHHHHHHHHhhCCCCc---hhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 176 ASMMRSTDVISIKELAEEECWALFKQLAFFGRST---EECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 176 ~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.........+.+.+++.++..+++.......... ....-..+..+.+++.++|.+..+.-+
T Consensus 151 ~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 151 SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2223445688999999999999998887541110 000111334678888899988654433
No 171
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=6.6e-10 Score=114.09 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=97.8
Q ss_pred CCCccEEEeeccccCCCCchhhhHHH---HHh-hCCceeEEecCCCCCCCcccccc-cccCCCcEEeccCCCCcccc-hh
Q 006588 411 TKRIRSLLIECRRFDHSSLNGEILEE---LFR-ELTSLRALDFPSLYLPSEIPRNI-KKLIHLRYLNLSGQKIEKLP-EA 484 (639)
Q Consensus 411 ~~~L~~L~l~~~~l~~~~~~~~~~~~---~~~-~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~~~l~~lp-~~ 484 (639)
+++|+.|++.+|.+. ...... .+. ..++|+.|+|++|.+.......+ ..+.+|+.|+|++|.++..+ ..
T Consensus 71 ~~~L~~L~Ls~n~l~-----~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMT-----PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCC-----HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCC-----HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 567889988777753 222221 122 23799999999999654433333 34678999999999987332 22
Q ss_pred ----h-hcCCCccEEecCCCCCcc----ccchhhhhcccCceeecCCCCcccc----ccccCCCCcCCccccceEecCCC
Q 006588 485 ----L-CELYNLEKLDICSCSCLK----ELPEGIGKLINMKYLLNRDTDSVRY----MPVGIARLKSLRTLEEVRVSGRG 551 (639)
Q Consensus 485 ----i-~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~~~~~~~~~ 551 (639)
+ ...++|+.|+|++|.+.. .++..+..+++|++|++++|.+... ++..+...++|++|+ ..+|
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~----Ls~N 221 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN----VAYN 221 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEE----CCSS
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEE----CCCC
Confidence 2 246789999999998533 3455567788999999999975432 234445556666666 2233
Q ss_pred ccCC----CccCCcccccCCCcCCceeeeC
Q 006588 552 CLDG----RKACRLESLKNLEHLQICGIRG 577 (639)
Q Consensus 552 ~~~~----~~~~~~~~l~~L~~L~l~~n~~ 577 (639)
.++. .+...+...++|+.|++++|.+
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 2221 1222233456677777766653
No 172
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.69 E-value=2.1e-07 Score=94.01 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=110.1
Q ss_pred chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 32 RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
.++..+.|.+.+.... -.+.+.++|++|+|||++|+.+++. ........ ...+.....+..+...-..
T Consensus 7 ~~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~--l~~~~~~~-----~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRY--LLCQQPQG-----HKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHH--HTCSSCBT-----TBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHH--HhCCCCCC-----CCCCCCCHHHHHHhcCCCC
Confidence 3566777888876433 4678999999999999999988773 21111000 0001111111111111000
Q ss_pred -----CC---CCcccHHHHHHHHHHh----cCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-Hh
Q 006588 112 -----ST---SNLDALQSLLISIDES----IAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-AS 177 (639)
Q Consensus 112 -----~~---~~~~~~~~~~~~l~~~----l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~ 177 (639)
.. .....+++..+.+... ..+++-++|+|+++.......+.+++.+.....++.+|++|.+.. + .+
T Consensus 75 d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 75 DYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp TEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred CEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 00 0112233332222221 124578999999998876667778888888777777777776543 2 22
Q ss_pred hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 178 MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 178 ~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
.......+++.+++.++..+++.... ..+ .+.+..+++.++|.|..+..+
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~~---~~~------~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSREV---TMS------QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHC---CCC------HHHHHHHHHHTTTCHHHHHHT
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHhc---CCC------HHHHHHHHHHcCCCHHHHHHH
Confidence 23445689999999999999998865 111 122578999999999765443
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.66 E-value=1.7e-07 Score=98.18 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=98.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcC--CceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQF--DKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
...++|+|++|+||||||+.+++. ....+ ..++++++.. +...+...+... ... .+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~------~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEK------FLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHH------HHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHH------HHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 567999999999999999999883 44443 3456665442 344444444321 111 2223334
Q ss_pred CceEEEEEeCCCCCCc--cCchhhhHhhhc-CCCCcEEEEEccchH---------HHhhhcccceEECCCCCHHHHHHHH
Q 006588 132 GKRFLLVLDDVWDGDY--IKWEPFYHCLKK-GLHGSKILITTRNES---------IASMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~--~~~~~l~~~l~~-~~~~~~ilvTsr~~~---------~~~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
.++.+|+|||++.... .....+...+.. ...+..||+||.... +...+.....+.+.+++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3567999999976543 122334444432 234667888887521 2222233357899999999999999
Q ss_pred HHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 200 KQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
...+........ .+.+..|++.+.|.+..+.-+
T Consensus 273 ~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHH
Confidence 887642221111 122677888999988655443
No 174
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.63 E-value=6.7e-08 Score=88.63 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=41.1
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+.....++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++.
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccccchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999742 4567899999999999999999874
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=2.5e-09 Score=109.79 Aligned_cols=150 Identities=14% Similarity=0.107 Sum_probs=105.6
Q ss_pred CceEEEEEEecccCc-----cccccc-CCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccc
Q 006588 389 EKVRHLMLIIGKEST-----FPISTC-RTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNI 462 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 462 (639)
+.++.+.+.++.+.. +...+. ..++|+.|++++|.+ .......+...+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-----DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-----CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-----CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 678889988887754 222222 347999998877765 434344445567789999999999654433333
Q ss_pred -----cccCCCcEEeccCCCCcc-----cchhhhcCCCccEEecCCCCCcc----ccchhhhhcccCceeecCCCCcccc
Q 006588 463 -----KKLIHLRYLNLSGQKIEK-----LPEALCELYNLEKLDICSCSCLK----ELPEGIGKLINMKYLLNRDTDSVRY 528 (639)
Q Consensus 463 -----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~lp~~~~~l~~L~~L~l~~n~~~~~ 528 (639)
...++|+.|+|++|.++. ++..+...++|++|+|++|.+.. .++..+...++|++|++++|.+...
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 235789999999999873 55566788999999999998543 2355567778999999999976542
Q ss_pred ----ccccCCCCcCCcccc
Q 006588 529 ----MPVGIARLKSLRTLE 543 (639)
Q Consensus 529 ----~p~~~~~l~~L~~L~ 543 (639)
++..+...++|++|+
T Consensus 227 g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 227 AALALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHhCCCCCEEe
Confidence 334444567788887
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.62 E-value=2.7e-07 Score=93.55 Aligned_cols=184 Identities=9% Similarity=0.095 Sum_probs=111.7
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-C-CceEEEEeCCCCchHH
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-F-DKILWVCVSETFDEFR 100 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f-~~~~wv~~~~~~~~~~ 100 (639)
|..-..++|.+..++.|...+.... ...+.++|++|+||||+|+.++.. .... + ..+..++..+......
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDV 92 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHH
Confidence 3344558999999999999987442 223899999999999999998874 2211 1 1122333332212111
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH-H-Hhh
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES-I-ASM 178 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~-~-~~~ 178 (639)
+ +.....+... .....+.+-++|+|+++.......+.+...+......+.+++++.... + ...
T Consensus 93 i-r~~i~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i 157 (340)
T 1sxj_C 93 V-RNQIKDFAST--------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL 157 (340)
T ss_dssp H-HTHHHHHHHB--------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred H-HHHHHHHHhh--------------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhH
Confidence 1 1111111100 000123467899999987765556667777777666777777776432 1 112
Q ss_pred hcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 179 MRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 179 ~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
......+.+.+++.++..+.+...+........ .+..+.+++.++|.+--+
T Consensus 158 ~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~----~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 158 LSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS----PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC----HHHHHHHHHHHTTCHHHH
T ss_pred HhhceeEeccCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 233457899999999999988877643222111 123677888899988743
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.61 E-value=4.3e-07 Score=91.21 Aligned_cols=196 Identities=14% Similarity=0.060 Sum_probs=111.4
Q ss_pred cccccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 20 STSLIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 20 ~~~~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
..|...-.+++|.++..++|.+++..... ......+.+.|+|++|+|||+||+++++ +.... .+.+++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~v~~~ 85 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANST---FFSVSSS 85 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCE---EEEEEHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCC---EEEEchH
Confidence 34445556799999999999998831100 0023457899999999999999999987 33322 2333332
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHH-HHHHHHhcCCceEEEEEeCCCCCCccC-----------chhhhHhhh---
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSL-LISIDESIAGKRFLLVLDDVWDGDYIK-----------WEPFYHCLK--- 158 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~LlvlDd~~~~~~~~-----------~~~l~~~l~--- 158 (639)
. +..... ...+.. ...+......++.+|+||+++...... ...+...+.
T Consensus 86 ~----------l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 86 D----------LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp H----------HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred H----------Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 1 111110 111122 222222224567899999997542211 223333333
Q ss_pred cCCCCcEEEEEccchHHHh-h-h-cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc-hhHHH
Q 006588 159 KGLHGSKILITTRNESIAS-M-M-RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAK 234 (639)
Q Consensus 159 ~~~~~~~ilvTsr~~~~~~-~-~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~ 234 (639)
....+..||.||....... . . .....+.+...+.++..+++..++......... .....|++.+.|+ +-.|.
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK----EDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCH----HHHHHHHHTTTTCCHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCH----HHHHHHHHHcCCCCHHHHH
Confidence 2334555666766532111 1 1 223578899999999999999887543322121 2357888888874 55666
Q ss_pred HHHhhh
Q 006588 235 TMGGLM 240 (639)
Q Consensus 235 ~~~~~l 240 (639)
.++...
T Consensus 226 ~l~~~a 231 (322)
T 3eie_A 226 VVVKDA 231 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 178
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=5.7e-08 Score=99.02 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=78.0
Q ss_pred eEEecCCC-CCCCcccccccccCCCcEEeccC-CCCcccc-hhhhcCCCccEEecCCCCCccccchhhhhcccCceeecC
Q 006588 445 RALDFPSL-YLPSEIPRNIKKLIHLRYLNLSG-QKIEKLP-EALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNR 521 (639)
Q Consensus 445 ~~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~-~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 521 (639)
..++.+++ . ...+|. +..+.+|+.|+|++ |.|+.+| ..|+.+++|+.|+|++|.+.+..|..|.++++|++|+++
T Consensus 11 ~~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34688887 6 556888 99999999999996 9999887 468999999999999999777667778999999999999
Q ss_pred CCCcccccccc-CCCCcCCcccc
Q 006588 522 DTDSVRYMPVG-IARLKSLRTLE 543 (639)
Q Consensus 522 ~n~~~~~~p~~-~~~l~~L~~L~ 543 (639)
+|.+. .+|.. +..++ |+.|.
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEE
T ss_pred CCccc-eeCHHHcccCC-ceEEE
Confidence 99865 45544 44444 88877
No 179
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=1.1e-07 Score=96.75 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=76.5
Q ss_pred hhHHHHHhhCCceeEEecCC-CCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccchhh
Q 006588 432 EILEELFRELTSLRALDFPS-LYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELPEGI 509 (639)
Q Consensus 432 ~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp~~~ 509 (639)
.+|. +..+.+|+.|+|++ |.+.+..+..|+++++|+.|+|++|.|+.+|+ .|..+++|+.|+|++|. +..+|..+
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~ 99 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT 99 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHH
Confidence 4666 78899999999996 88666566889999999999999999997765 67999999999999999 55666655
Q ss_pred hhcccCceeecCCCCcc
Q 006588 510 GKLINMKYLLNRDTDSV 526 (639)
Q Consensus 510 ~~l~~L~~L~l~~n~~~ 526 (639)
....+|+.|++.+|.+.
T Consensus 100 ~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TCSCCCCEEECCSSCCC
T ss_pred cccCCceEEEeeCCCcc
Confidence 44444999999999764
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.58 E-value=6.7e-07 Score=89.39 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=94.8
Q ss_pred CcccchhhHHHHHHHHhccCC---------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC--ceEEEEeCCCC
Q 006588 28 EICGRVGERNALVSMLLCESS---------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD--KILWVCVSETF 96 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~---------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~ 96 (639)
.++|.++..+++.+.+..... ...+....+.|+|++|+|||++|+.+++......... .++.++...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD-- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH--
Confidence 489999999999877653210 0022456799999999999999998888432222211 233333221
Q ss_pred chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCC---------CccCchhhhHhhhcCCCCcEEE
Q 006588 97 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDG---------DYIKWEPFYHCLKKGLHGSKIL 167 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~---------~~~~~~~l~~~l~~~~~~~~il 167 (639)
+..... ..........+... ++.+|+||+++.. .......+...+.....+..+|
T Consensus 110 ------------l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 110 ------------LVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp ------------TCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred ------------hhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 111110 01111222222222 3459999999844 2233455666676666677788
Q ss_pred EEccchHHHh-------hhcc-cceEECCCCCHHHHHHHHHHHhhC
Q 006588 168 ITTRNESIAS-------MMRS-TDVISIKELAEEECWALFKQLAFF 205 (639)
Q Consensus 168 vTsr~~~~~~-------~~~~-~~~~~l~~l~~~ea~~l~~~~~~~ 205 (639)
+||....... .... ...+.+..++.++..+++...+..
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8876543211 1112 368999999999999999887653
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.58 E-value=7.5e-07 Score=89.66 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=101.1
Q ss_pred CCCCcc-cc--hhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 25 DEEEIC-GR--VGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 25 ~~~~~v-gR--~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
..++|| |. ......+..+..... .....+.|+|++|+|||+||+.+++. ....-..++++++. ++
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~ 76 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DF 76 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HH
Confidence 445666 43 334455566555332 13467999999999999999999884 32222345666643 23
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc--cCchhhhHhhhc-CCCCcEEEEEccchH----
Q 006588 102 AKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY--IKWEPFYHCLKK-GLHGSKILITTRNES---- 174 (639)
Q Consensus 102 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~--~~~~~l~~~l~~-~~~~~~ilvTsr~~~---- 174 (639)
...+...+.. ........ ... ++.+|+||+++.... .....+...+.. ...+..+|+|+....
T Consensus 77 ~~~~~~~~~~-----~~~~~~~~----~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 77 AQAMVEHLKK-----GTINEFRN----MYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHH-----TCHHHHHH----HHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHc-----CcHHHHHH----Hhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 3333333321 11112211 111 356999999977542 122334444332 123556777775321
Q ss_pred -----HHhhhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHH
Q 006588 175 -----IASMMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAA 233 (639)
Q Consensus 175 -----~~~~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 233 (639)
+...+.....+++.+ +.++..+++...+........ .+..+.|++.+ |..-.+
T Consensus 147 ~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~----~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 147 GVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR----KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp TSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHC-SSHHHH
T ss_pred HhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHhC-CCHHHH
Confidence 122222235789999 999999999887643222211 23367788888 776543
No 182
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.51 E-value=9.9e-08 Score=83.63 Aligned_cols=114 Identities=14% Similarity=-0.016 Sum_probs=72.1
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHH
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLE 107 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 107 (639)
+++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+++. ....-...+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~--~~~~~~~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQF--GRNAQGEFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHS--STTTTSCCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHh--CCccCCCEE-EECCCCCcc---------
Confidence 689999999999998865443 3455899999999999999988763 111112233 666543222
Q ss_pred HccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 108 ALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
.... ..+... +.-+|+||+++.........+...+.......++|.||..
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2247899999887655556677777655556778887764
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.49 E-value=6.9e-07 Score=90.90 Aligned_cols=194 Identities=15% Similarity=0.070 Sum_probs=107.7
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
+...-.+++|.+...+.|.+.+..... ......+.|.|+|++|+|||+||+++++. .... .+.+++.
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~---~~~v~~~-- 118 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANST---FFSVSSS-- 118 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCE---EEEEEHH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCC---EEEeeHH--
Confidence 344455799999999999988732100 00223467999999999999999999873 3222 2333322
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC-----------chhhhHhhhcC---C
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK-----------WEPFYHCLKKG---L 161 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~-----------~~~l~~~l~~~---~ 161 (639)
++ ...... .........+......++.+|+||+++...... ...++..+... .
T Consensus 119 ----~l----~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 119 ----DL----VSKWMG-----ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ----HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred ----HH----hhhhcc-----hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 11 111110 111111222222223578999999997643210 23333333322 2
Q ss_pred CCcEEEEEccchHH-Hh-hh-cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc-hhHHHHHH
Q 006588 162 HGSKILITTRNESI-AS-MM-RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMG 237 (639)
Q Consensus 162 ~~~~ilvTsr~~~~-~~-~~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 237 (639)
.+..||.||..... .. .. .....+.+...+.++..+++..+......... ......|++.+.|+ +-.|..++
T Consensus 186 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 35556666654421 11 11 23457889999999999999887753322111 12367888899884 54566555
Q ss_pred hh
Q 006588 238 GL 239 (639)
Q Consensus 238 ~~ 239 (639)
..
T Consensus 262 ~~ 263 (355)
T 2qp9_X 262 KD 263 (355)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.49 E-value=1.5e-06 Score=85.08 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=93.8
Q ss_pred CCCcccchhhHHHHHH-------HHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 26 EEEICGRVGERNALVS-------MLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~-------~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
...++|+...++++.. .+.... ....+.+.|+|++|+|||++|+.+++. .. . ..+.+++.+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~-~~~~i~~~~---- 99 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SN--F-PFIKICSPD---- 99 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HT--C-SEEEEECGG----
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hC--C-CEEEEeCHH----
Confidence 3468899888777666 332211 346789999999999999999999873 22 1 223333322
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCC------CccCc----hhhhHhhhc---CCCCcE
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDG------DYIKW----EPFYHCLKK---GLHGSK 165 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~------~~~~~----~~l~~~l~~---~~~~~~ 165 (639)
.+.... ...........+......++.+|+||+++.. ..... ..+...+.. ......
T Consensus 100 ---------~~~g~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 100 ---------KMIGFS-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ---------GCTTCC-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ---------HhcCCc-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 111110 0111122223333334567899999998653 11111 222222222 222344
Q ss_pred EEEEccchHHHhh---hcc-cceEECCCCCH-HHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc
Q 006588 166 ILITTRNESIASM---MRS-TDVISIKELAE-EECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL 229 (639)
Q Consensus 166 ilvTsr~~~~~~~---~~~-~~~~~l~~l~~-~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 229 (639)
||.||........ ... ...+.+++++. ++..+++.... ... .+....+++.+.|+
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~~------~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NFK------DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CSC------HHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CCC------HHHHHHHHHHhcCC
Confidence 6667776543222 122 45789999987 66666665532 111 12257788888774
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.48 E-value=1.8e-06 Score=86.43 Aligned_cols=195 Identities=15% Similarity=0.075 Sum_probs=108.5
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF 96 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 96 (639)
...-.+++|.++..+.|.+.+..+.. ......+.+.|+|++|+|||+||+++++. .. -...+.++...-.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~--~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--AN--NSTFFSISSSDLV 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TT--SCEEEEEECCSSC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cC--CCcEEEEEhHHHH
Confidence 34455789999999999887742110 00224578999999999999999999873 21 1123334443211
Q ss_pred chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------C-----chhhhHhhhc---CCC
Q 006588 97 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI------K-----WEPFYHCLKK---GLH 162 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~------~-----~~~l~~~l~~---~~~ 162 (639)
.... ..........+......++.+|+||+++..... . ...+...+.. ...
T Consensus 84 --------------~~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 84 --------------SKWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp --------------CSSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred --------------hhhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0000 011111122222222357889999999754111 0 1122333322 223
Q ss_pred CcEEEEEccchHH-Hhh-h-cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc-hhHHHHHHh
Q 006588 163 GSKILITTRNESI-ASM-M-RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMGG 238 (639)
Q Consensus 163 ~~~ilvTsr~~~~-~~~-~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 238 (639)
+..||.||..... ... . .....+.+...+.++..+++..+......... ......|++.+.|+ +-.|..++.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4555556654321 111 1 22357889999999999999887643322111 12367899999887 555666655
Q ss_pred hh
Q 006588 239 LM 240 (639)
Q Consensus 239 ~l 240 (639)
..
T Consensus 225 ~A 226 (322)
T 1xwi_A 225 DA 226 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.46 E-value=2.7e-06 Score=84.39 Aligned_cols=193 Identities=15% Similarity=0.100 Sum_probs=106.5
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
++..-.+++|.+...+.+.+.+..... ......+.+.|+|++|+|||++|+.++.. .. ...+.+++...
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~---~~~~~i~~~~l 90 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CS---ATFLNISAASL 90 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TT---CEEEEEESTTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hC---CCeEEeeHHHH
Confidence 344456799999999999998743210 00124578999999999999999988773 22 12334444332
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC-----------chhhhHhhhcCC---
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK-----------WEPFYHCLKKGL--- 161 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~-----------~~~l~~~l~~~~--- 161 (639)
.. ...+ .........+......++.+|+||+++...... ...+...+....
T Consensus 91 ~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 155 (297)
T 3b9p_A 91 TS--------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP 155 (297)
T ss_dssp SS--------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC---
T ss_pred hh--------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC
Confidence 11 0000 111111112222223567899999996542110 112233332221
Q ss_pred --CCcEEEEEccchHH-Hhh-h-cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHH
Q 006588 162 --HGSKILITTRNESI-ASM-M-RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKT 235 (639)
Q Consensus 162 --~~~~ilvTsr~~~~-~~~-~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 235 (639)
.+..||.||..... ... . .....+.+...+.++...++............ .+....+++.+.|++- ++..
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHH
Confidence 24556666665321 111 1 22357888888888888888776643222111 1236788888988875 5655
Q ss_pred HHh
Q 006588 236 MGG 238 (639)
Q Consensus 236 ~~~ 238 (639)
++.
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.42 E-value=2e-06 Score=87.62 Aligned_cols=192 Identities=10% Similarity=0.029 Sum_probs=106.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCc------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
..-.+++|.+...++|.+.+...... .....+.+.|+|++|+|||+||+.+++. .. ...+.+++.....
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~---~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SG---ATFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TT---CEEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cC---CeEEEEehHHhhc
Confidence 34456899999999999987531000 0224678999999999999999998763 22 2234455542211
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-----------CchhhhHhhhcC----CC
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-----------KWEPFYHCLKKG----LH 162 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-----------~~~~l~~~l~~~----~~ 162 (639)
...+ .........+......++.+|+||+++..... ....++..+... ..
T Consensus 156 --------------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 --------------KWVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp --------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred --------------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0000 01111111122222356789999999543110 012333333321 23
Q ss_pred CcEEEEEccchH-HHhh-h-cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCC-chhHHHHHHh
Q 006588 163 GSKILITTRNES-IASM-M-RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAAKTMGG 238 (639)
Q Consensus 163 ~~~ilvTsr~~~-~~~~-~-~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 238 (639)
+..||.||.... +... . .....+.+...+.++..+++...+........ .+....|++.+.| .+..|..++.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS----EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc----HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445665665432 1111 1 22347889999999999999877643322111 1236788888888 4556666554
Q ss_pred h
Q 006588 239 L 239 (639)
Q Consensus 239 ~ 239 (639)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.40 E-value=2.3e-06 Score=88.36 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=104.6
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
++..-.+++|++..++.|.+++..... ......+.+.|+|++|+|||+||+.+++. .. ...+.+++...
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~---~~~~~v~~~~l 184 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SN---ATFFNISAASL 184 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TT---CEEEEECSCCC
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hc---CcEEEeeHHHh
Confidence 334445799999999999998832110 00123578999999999999999998662 22 22344444332
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc-------cC----chhhhHhhhc----C
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY-------IK----WEPFYHCLKK----G 160 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-------~~----~~~l~~~l~~----~ 160 (639)
... ... .........+.......+.+|+||+++.... .. ...+...+.. .
T Consensus 185 ~~~----------~~g-----~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 185 TSK----------YVG-----EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred hcc----------ccc-----hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 110 000 0111111222222234568999999965410 00 1122222221 1
Q ss_pred CCCcEEEEEccchHH-Hh-hhcc-cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh-HHHHH
Q 006588 161 LHGSKILITTRNESI-AS-MMRS-TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL-AAKTM 236 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~-~~-~~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 236 (639)
.....||.||..... .. .... ...+.+...+.++..+++...+........ .+.+..+++.+.|+.- +|..+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~----~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT----QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 234456656654321 11 1122 346889999999999999887754332211 1236788888888654 55555
Q ss_pred Hh
Q 006588 237 GG 238 (639)
Q Consensus 237 ~~ 238 (639)
..
T Consensus 326 ~~ 327 (389)
T 3vfd_A 326 AK 327 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=1.3e-06 Score=86.33 Aligned_cols=149 Identities=14% Similarity=0.022 Sum_probs=97.4
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH-hcCCceEEEEeCC-CCchHHHHHHHHHH
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK-RQFDKILWVCVSE-TFDEFRIAKAMLEA 108 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~il~~ 108 (639)
|-++.++.|.+.+... ..+...++|++|+|||++|+.+++..... ..+..+.+++..+ ..++.+ .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 4567788888888733 36799999999999999999987631100 1223445555432 222222 2333333
Q ss_pred ccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch-HHHhhhcccceEEC
Q 006588 109 LTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE-SIASMMRSTDVISI 187 (639)
Q Consensus 109 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~-~~~~~~~~~~~~~l 187 (639)
+.... ..+++-++|+|+++.......+.+++.+....+.+.+|++|..+ .+...+.+. .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 32111 12456799999999887677788999998887888877776543 233333333 8999
Q ss_pred CCCCHHHHHHHHHHHh
Q 006588 188 KELAEEECWALFKQLA 203 (639)
Q Consensus 188 ~~l~~~ea~~l~~~~~ 203 (639)
.+++.++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998876
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.39 E-value=2.2e-06 Score=85.03 Aligned_cols=185 Identities=16% Similarity=0.114 Sum_probs=104.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
...-.+++|.++..++|.+++.....+ .-+..+.+.|+|++|+|||+||+.++.. ... ..+.+++
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~---~~i~v~~--- 82 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQA---NFISIKG--- 82 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---EEEEECH---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCC---CEEEEEh---
Confidence 344456999999999999887632000 0124578999999999999999998873 221 2222221
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc-----------c---CchhhhHhhhcC-
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY-----------I---KWEPFYHCLKKG- 160 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~-----------~---~~~~l~~~l~~~- 160 (639)
.++ ...+.... ....... +.......+.+|+||+++.... . ....++..+...
T Consensus 83 ---~~l----~~~~~g~~--~~~~~~~---f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 83 ---PEL----LTMWFGES--EANVREI---FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp ---HHH----HHHHHTTC--TTHHHHH---HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred ---HHH----HhhhcCch--HHHHHHH---HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 122 22222211 1222222 2223345689999999964110 0 123344444332
Q ss_pred -CCCcEEEEEccchHHH-hh-hc---ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhH
Q 006588 161 -LHGSKILITTRNESIA-SM-MR---STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLA 232 (639)
Q Consensus 161 -~~~~~ilvTsr~~~~~-~~-~~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 232 (639)
..+..||.||...... .. .. ....+.+...+.++..+++.......... ...+ ...++..+.|+|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCC----HHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccch----HHHHHHHcCCCCHH
Confidence 2355677777654321 11 11 23578999999999999987776432211 1111 35666777777654
No 191
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=8.2e-06 Score=82.63 Aligned_cols=184 Identities=13% Similarity=0.038 Sum_probs=104.9
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
|.+.-.++.|-++..++|.+.+.-+-.+ .-+.++-|.++||+|+|||.||+++++ +....| +.++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~ 217 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAE 217 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHH
Confidence 3444456889999999998876532110 023567899999999999999999988 344332 3333332
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------C------chhhhHhhhcC
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI--------K------WEPFYHCLKKG 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~--------~------~~~l~~~l~~~ 160 (639)
- ..... ......+...+...-...+++|++|+++..-.. + ...++..+...
T Consensus 218 l--------------~sk~v-Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 218 L--------------VQKYI-GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp G--------------SCSST-THHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred h--------------hcccc-chHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 1 11110 011111222222223457899999999753110 0 12233333332
Q ss_pred --CCCcEEEEEccchHHHh-----hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 --LHGSKILITTRNESIAS-----MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 --~~~~~ilvTsr~~~~~~-----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..+..||.||...+... .......+.++.-+.++..++|..+..+..... ..+ ...|++.+.|+-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-GIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-SCC----HHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-cCC----HHHHHHHCCCCC
Confidence 33455677776543211 113356899999999999999987764332211 112 467888887764
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.33 E-value=2.2e-06 Score=97.67 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=85.2
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh-----cCCceEEEEeCCCCc
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR-----QFDKILWVCVSETFD 97 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~~~~~~ 97 (639)
+..-+.+|||++++.++.+.|... ....++|+|++|+|||++|+.+++...... .-..++++++.....
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----
T ss_pred cCCCcccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc
Confidence 334456999999999999999743 345689999999999999999988421110 112344444422110
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHH-HHHHhcC-CceEEEEEeCCCCCC--------ccCchhhhHhhhcCCCCcEEE
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLI-SIDESIA-GKRFLLVLDDVWDGD--------YIKWEPFYHCLKKGLHGSKIL 167 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~-~l~~~l~-~~~~LlvlDd~~~~~--------~~~~~~l~~~l~~~~~~~~il 167 (639)
... .......... .+..... +++.+|++|+++... ....+.+...+.. + ...+|
T Consensus 240 -------------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~-~i~~I 303 (854)
T 1qvr_A 240 -------------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-G-ELRLI 303 (854)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-T-CCCEE
T ss_pred -------------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-C-CeEEE
Confidence 000 0011222222 2222222 468999999997643 1112233334433 2 33455
Q ss_pred EEccchHHH------hhhcccceEECCCCCHHHHHHHHHHH
Q 006588 168 ITTRNESIA------SMMRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 168 vTsr~~~~~------~~~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
.+|...... ........+.++.++.++..+++...
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 555433321 11233457999999999999998654
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.30 E-value=1e-05 Score=84.82 Aligned_cols=195 Identities=16% Similarity=0.140 Sum_probs=107.1
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCC------cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~------~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
|...-.+++|.++..+.|.+.+..+.. ......+.+.|+|++|+|||+||+++++. . ...-++.+...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~ 202 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSS 202 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHH
Confidence 344456689999999999988732100 00124578999999999999999998773 2 12223333321
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc-------Cc----hhhhHhhhc---CC
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI-------KW----EPFYHCLKK---GL 161 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~-------~~----~~l~~~l~~---~~ 161 (639)
++. ....... ............ ...+.+|+||+++..... .. ..++..+.. ..
T Consensus 203 ----~l~----~~~~g~~--~~~~~~~f~~a~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 ----DLV----SKWLGES--EKLVKNLFQLAR---ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp -----------------C--CCTHHHHHHHHH---HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----HHH----hhhcchH--HHHHHHHHHHHH---HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 111 1111111 122333332222 356789999999764211 01 112222222 13
Q ss_pred CCcEEEEEccchHHH-h-hhcc-cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc-hhHHHHHH
Q 006588 162 HGSKILITTRNESIA-S-MMRS-TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMG 237 (639)
Q Consensus 162 ~~~~ilvTsr~~~~~-~-~~~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 237 (639)
.+..||.||...... . .... ...+.+...+.++..+++..+......... ......|++.+.|+ +-.|..++
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666677654211 1 1122 347888889999999999887643322111 12367888889885 44666555
Q ss_pred hh
Q 006588 238 GL 239 (639)
Q Consensus 238 ~~ 239 (639)
..
T Consensus 346 ~~ 347 (444)
T 2zan_A 346 RD 347 (444)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.30 E-value=1.5e-06 Score=79.09 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=67.6
Q ss_pred chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 32 RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 32 R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
+.+.++.+.+++.... -+..+.++|+|++|+||||||+.++...... .-..+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEEEEE------HHHHHHHHHHHhcC
Confidence 5566666776666544 2345789999999999999999998842212 222344544 33444444443322
Q ss_pred CCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCc--hhhhHhhhcC-CCCcEEEEEccc
Q 006588 112 STSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKW--EPFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~--~~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
... . .....+. ++-+||||+++......+ ..+...+... ..+..+|+||..
T Consensus 89 ~~~--~---~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD--T---KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC--S---HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH--H---HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 1 2222221 456899999974221222 2343444332 246778888874
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.28 E-value=3.5e-07 Score=79.85 Aligned_cols=112 Identities=8% Similarity=-0.003 Sum_probs=66.2
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAM 105 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 105 (639)
+.+++|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++... ..+.+++... ..+.
T Consensus 3 ~~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~--~~~~---- 66 (143)
T 3co5_A 3 AFDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEY--LIDM---- 66 (143)
T ss_dssp -----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTH--HHHC----
T ss_pred CcCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhC--ChHh----
Confidence 34689999999999998865432 334589999999999999999887421 2333333221 0111
Q ss_pred HHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-CCCcEEEEEccc
Q 006588 106 LEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGSKILITTRN 172 (639)
Q Consensus 106 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~~ilvTsr~ 172 (639)
....+. .. +.-+|+||+++.........+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~-~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQ-KA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHH-HT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHH-hC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 111111 11 1246899999887655555566666543 345678887764
No 196
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.28 E-value=2.8e-06 Score=84.94 Aligned_cols=168 Identities=11% Similarity=0.225 Sum_probs=96.6
Q ss_pred CCcccchhhHHHHHHHHhccCC---cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~---~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|.+..++.+...+..... ...+....+.|+|++|+|||++|+.+++. ....-...+.+++........ ..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-VS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-HH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-HH
Confidence 4588999999999998875421 00223468999999999999999998873 333223456677654333221 11
Q ss_pred HHHHHccCCCC--CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEc
Q 006588 104 AMLEALTGSTS--NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITT 170 (639)
Q Consensus 104 ~il~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTs 170 (639)
.+ ++.... ...........+. ..+..+++||+++.........+...+.... ..+.+|+||
T Consensus 94 ~l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~tt 167 (311)
T 4fcw_A 94 RL---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTS 167 (311)
T ss_dssp HH---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEE
T ss_pred Hh---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEec
Confidence 11 221110 0011112222222 2345799999998876555566666665432 244477777
Q ss_pred cch---------------HH--------H-----hhhcc-cceEECCCCCHHHHHHHHHHHh
Q 006588 171 RNE---------------SI--------A-----SMMRS-TDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 171 r~~---------------~~--------~-----~~~~~-~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
... .+ . ..... ...+.+.+++.++..+++....
T Consensus 168 n~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 168 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp STTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred ccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 651 10 0 01122 2467788888888877776543
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.27 E-value=3e-06 Score=89.48 Aligned_cols=187 Identities=12% Similarity=0.065 Sum_probs=106.7
Q ss_pred CCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
-.+++|.+..+++|.+++.....+. .+..+.|.|+|++|+|||++|+.+++. .. ...+.+++..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~---~~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TG---AFFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CS---SEEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hC---CCEEEEEchH----
Confidence 3468999999999999886430000 124567999999999999999998762 22 2234444321
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc------c-----CchhhhHhhhcC--CCCcE
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY------I-----KWEPFYHCLKKG--LHGSK 165 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~-----~~~~l~~~l~~~--~~~~~ 165 (639)
+...+. ..........+.....+++.+|+||+++.... . ....++..+... ..+..
T Consensus 274 ------l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 ------IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ------HHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ------hhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111111 11122233334444456789999999943211 0 123344445432 23445
Q ss_pred EEEEccchHH-Hhhh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc-hhHHHHHH
Q 006588 166 ILITTRNESI-ASMM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL-PLAAKTMG 237 (639)
Q Consensus 166 ilvTsr~~~~-~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 237 (639)
||.||..... ...+ .....+.+...+.++..+++..+........ ... ...+++.+.|+ +-.+..++
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~----l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVD----LEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhh----HHHHHHHccCCcHHHHHHHH
Confidence 6666665421 1111 2234789999999999999988764332211 111 36677777775 44455443
No 198
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.24 E-value=2.1e-06 Score=88.76 Aligned_cols=192 Identities=7% Similarity=0.062 Sum_probs=98.6
Q ss_pred eEEEEEEecccCccc-ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCc
Q 006588 391 VRHLMLIIGKESTFP-ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLR 469 (639)
Q Consensus 391 ~~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 469 (639)
++.+.+.. ....++ ..|..|++|+.+.+..+.+ ..++...|. +.+|+.+.+..+ +...-...|.+|.+|+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l------~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI------TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC------SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc------eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCC
Confidence 44444443 233333 4455666666665555442 233333344 356666666543 2222334556666666
Q ss_pred EEeccCCCCcccch-hhhcCCCccEEecCCCCCcccc-chhhhhcccCceeecCCCCcc-----ccccccCCCCcCCccc
Q 006588 470 YLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKEL-PEGIGKLINMKYLLNRDTDSV-----RYMPVGIARLKSLRTL 542 (639)
Q Consensus 470 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L 542 (639)
.+.+..+ ++.++. .|.. .+|+.+.+.. + +..+ +..+.++++|+.+++.+|... ..-+..|..+++|+.+
T Consensus 230 ~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 230 TIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp CEECCTT-CCEECTTTTTT-CCCSEEEEET-T-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred EEecCCC-ccCcccccccc-CCccEEEeCC-C-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 6666553 444433 3333 5666666633 2 2333 344667777777777666432 1233446666777766
Q ss_pred cceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
.+ .++ +...-...|.++++|+.+.+..+ .. ......+.+| +|+.|+++.|...
T Consensus 306 ~l----~~~-i~~I~~~aF~~c~~L~~l~lp~~--l~------~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 306 EI----PES-IRILGQGLLGGNRKVTQLTIPAN--VT------QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CC----CTT-CCEECTTTTTTCCSCCEEEECTT--CC------EECTTSSSSS-CCCEEEECCSSCC
T ss_pred Ee----CCc-eEEEhhhhhcCCCCccEEEECcc--cc------EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 52 221 23333455667777777766433 11 1122246677 7888888766543
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.5e-05 Score=82.17 Aligned_cols=185 Identities=14% Similarity=0.086 Sum_probs=106.0
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
.|.+.-.++.|-++..++|.+.+.-+-.+ .-+.++-|.+|||+|+|||.||+++++ +.... .+.++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~---~~~v~~s 249 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN---FIFSPAS 249 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGG
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC---EEEEehh
Confidence 34455566889999999988876542211 024568899999999999999999988 33322 2334433
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc------c--C------chhhhHhhhc
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY------I--K------WEPFYHCLKK 159 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~--~------~~~l~~~l~~ 159 (639)
+- .....+ .........+...-...+++|++|+++..-. . + ...++..+..
T Consensus 250 ~l--------------~sk~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 314 (437)
T 4b4t_L 250 GI--------------VDKYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG 314 (437)
T ss_dssp GT--------------CCSSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS
T ss_pred hh--------------ccccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc
Confidence 21 111100 1111112222222345799999999974210 0 0 1223333333
Q ss_pred C--CCCcEEEEEccchHHHhh-h-c---ccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 160 G--LHGSKILITTRNESIASM-M-R---STDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 160 ~--~~~~~ilvTsr~~~~~~~-~-~---~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
. ..+..||.||...+.... + . ....+.++.-+.++..++|..+........ ..+ ...+++.+.|+-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTG-EFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCS-CCC----HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCc-ccC----HHHHHHhCCCCC
Confidence 2 235567777775543221 1 1 245788888899999999987765332211 112 467788887764
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.24 E-value=3.2e-07 Score=93.28 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=93.1
Q ss_pred ccccCCCCccEEEeeccccCCCCch----hhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCc-c
Q 006588 406 ISTCRTKRIRSLLIECRRFDHSSLN----GEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIE-K 480 (639)
Q Consensus 406 ~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~-~ 480 (639)
.+..++++|+.|.+.......+.++ +. ...++..+++|+.|.+++|.. ..++. + .+++|+.|++..|.++ .
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccC-HHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChH
Confidence 3455677777777754432211111 11 234467788999999988741 23343 3 3788999999888876 2
Q ss_pred cchhhh--cCCCccEEecCCC--CCcc-----ccchhh--hhcccCceeecCCCCccccccccC---CCCcCCccccceE
Q 006588 481 LPEALC--ELYNLEKLDICSC--SCLK-----ELPEGI--GKLINMKYLLNRDTDSVRYMPVGI---ARLKSLRTLEEVR 546 (639)
Q Consensus 481 lp~~i~--~l~~L~~L~l~~~--~~~~-----~lp~~~--~~l~~L~~L~l~~n~~~~~~p~~~---~~l~~L~~L~~~~ 546 (639)
....+. .+++|+.|+|+.+ ...+ .+...+ ..+++|++|++++|.+....+..+ ..+++|++|++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL-- 286 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-- 286 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC--
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC--
Confidence 223443 6889999988532 1111 111222 346888888888887554332222 23566666663
Q ss_pred ecCCCccCCC----ccCCcccccCCCcCCceeee
Q 006588 547 VSGRGCLDGR----KACRLESLKNLEHLQICGIR 576 (639)
Q Consensus 547 ~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n~ 576 (639)
+.|.+... ++..+..+++|+.|+++.|.
T Consensus 287 --s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 287 --SAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp --CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred --CCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 22323221 23344556777777777665
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.23 E-value=1.9e-06 Score=91.09 Aligned_cols=146 Identities=15% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-------CceEEEEeCCCCch
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-------DKILWVCVSETFDE 98 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-------~~~~wv~~~~~~~~ 98 (639)
-+.+|||++++.++.+.+... ....+.|+|++|+|||++|+.+++. ....+ ..++.+++.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-----
Confidence 346999999999999999743 3456789999999999999999883 32211 122233333
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHH--
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIA-- 176 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~-- 176 (639)
....+.. ..........+ -..++.+|++|. .. ...+.+...+.. ...++|.+|......
T Consensus 246 --------~~~~g~~--e~~~~~~~~~~---~~~~~~iLfiD~--~~--~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 --------TKYRGEF--EDRLKKVMDEI---RQAGNIILFIDA--AI--DASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHHHHH---HTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred --------ccccchH--HHHHHHHHHHH---HhcCCeEEEEeC--ch--hHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 0000000 11222222222 235678999991 11 122223333322 234566666544311
Q ss_pred -----hhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 177 -----SMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 177 -----~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
........+.+...+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 112234579999999999999998765
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.22 E-value=2.4e-06 Score=79.40 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCCcccch----hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH
Q 006588 25 DEEEICGRV----GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 25 ~~~~~vgR~----~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 100 (639)
.-.+|++.. ..++.+.+++..... ....+.+.|+|++|+|||+||+.+++. ...+...++|+++. +
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~ 92 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------E 92 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------H
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------H
Confidence 445677644 355566666654432 112278999999999999999999883 44444567777653 3
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCc--hhhhH-hhhcC-CCCcEEEEEccc
Q 006588 101 IAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKW--EPFYH-CLKKG-LHGSKILITTRN 172 (639)
Q Consensus 101 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~--~~l~~-~l~~~-~~~~~ilvTsr~ 172 (639)
+...+...+.. .........+.. .-+|||||++......| ..+.. .+... ..+..+|+||..
T Consensus 93 ~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 93 LFRELKHSLQD-----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHhcc-----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 34444332221 112233333322 23899999965332222 22332 33222 234568888874
No 203
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=1.9e-06 Score=89.10 Aligned_cols=195 Identities=9% Similarity=0.064 Sum_probs=138.5
Q ss_pred CceEEEEEEecccCcccccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCC
Q 006588 389 EKVRHLMLIIGKESTFPISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHL 468 (639)
Q Consensus 389 ~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 468 (639)
..++.+.+..+.+..++.....+.+|+.+.+..+ ...+....|.++.+|+.+.+..+- ...-...|.+ .+|
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-------l~~I~~~aF~~~~~L~~l~l~~~l-~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-------LKEIGSQAFLKTSQLKTIEIPENV-STIGQEAFRE-SGI 250 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-------CCEECTTTTTTCTTCCCEECCTTC-CEECTTTTTT-CCC
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc-------hheehhhHhhCCCCCCEEecCCCc-cCcccccccc-CCc
Confidence 5788898888888888866666899999977643 334556668999999999998853 3333455655 689
Q ss_pred cEEeccCCCCcccc-hhhhcCCCccEEecCCCCCc----ccc-chhhhhcccCceeecCCCCccccccccCCCCcCCccc
Q 006588 469 RYLNLSGQKIEKLP-EALCELYNLEKLDICSCSCL----KEL-PEGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTL 542 (639)
Q Consensus 469 ~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~----~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 542 (639)
+.+.+ .+.++.++ ..|..+++|+.+++.++... ..+ +..+.++++|+.+.+.++ +...-...|..+.+|+.+
T Consensus 251 ~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 251 TTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp SEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEE
T ss_pred cEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEE
Confidence 99999 45577664 47889999999999887632 124 355889999999999865 333334568888999988
Q ss_pred cceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccc-cCcceEEEEecc
Q 006588 543 EEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKK-KYLFSLTLKFDE 607 (639)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 607 (639)
.+ ..+ +...-...|.++ +|+.+.+.+|...... ...+..+ .+++.|.+-.+.
T Consensus 329 ~l----p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~-------~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 329 TI----PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF-------EKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EE----CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC-------CSSCCCSCTTCCEEEECGGG
T ss_pred EE----Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc-------cccccCCCCCccEEEeCHHH
Confidence 73 222 333445678888 9999999888643221 2235566 478899887553
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.20 E-value=1e-05 Score=78.35 Aligned_cols=190 Identities=11% Similarity=0.035 Sum_probs=99.6
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCC---c---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESS---E---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~---~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
++..-.+++|.+...+++.+.+..... . ..+..+-+.|+|++|+|||++|+.+++. ... ..+.++...-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~---~~~~i~~~~~ 81 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKV---PFFTISGSDF 81 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTC---CEEEECSCSS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCC---CEEEEeHHHH
Confidence 344455789999888888776432110 0 0112445899999999999999999773 221 2344443321
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------------CchhhhHhhhcC-
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI--------------KWEPFYHCLKKG- 160 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~--------------~~~~l~~~l~~~- 160 (639)
.. ... ..........+.......+.++++|+++..... ....++..+...
T Consensus 82 ~~----------~~~-----~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 82 VE----------MFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp TT----------SCC-----CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HH----------Hhh-----hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 11 000 011122223333333556789999998432110 011222223221
Q ss_pred -CCCcEEEEEccchH-HHhhh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCC-chhHH
Q 006588 161 -LHGSKILITTRNES-IASMM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKG-LPLAA 233 (639)
Q Consensus 161 -~~~~~ilvTsr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal 233 (639)
..+..||.||...+ +.... .....+.+...+.++..+++..+........ ... ...++..+.| .+--|
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~-~~~----~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DID----AAIIARGTPGFSGADL 221 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-TCC----HHHHHHTCTTCCHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCc-ccc----HHHHHHHcCCCCHHHH
Confidence 23455666666543 11111 1234778888888888888877653322111 111 3456667777 56555
Q ss_pred HHH
Q 006588 234 KTM 236 (639)
Q Consensus 234 ~~~ 236 (639)
..+
T Consensus 222 ~~l 224 (257)
T 1lv7_A 222 ANL 224 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 205
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=5.2e-07 Score=91.71 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=99.9
Q ss_pred HhhCCceeEEecCCCCC---------CCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccchh
Q 006588 438 FRELTSLRALDFPSLYL---------PSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELPEG 508 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~---------~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp~~ 508 (639)
...+++|+.|.+.++.. .+.++..+..+++|+.|++++|.-..++. + .+++|+.|+|..|.+.......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 45678999998866532 11244556778999999999884224444 4 3889999999888754433333
Q ss_pred hh--hcccCceeecCCC--Cccc-----cccccC--CCCcCCccccceEecCCCccCCCccCCc---ccccCCCcCCcee
Q 006588 509 IG--KLINMKYLLNRDT--DSVR-----YMPVGI--ARLKSLRTLEEVRVSGRGCLDGRKACRL---ESLKNLEHLQICG 574 (639)
Q Consensus 509 ~~--~l~~L~~L~l~~n--~~~~-----~~p~~~--~~l~~L~~L~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~l~~ 574 (639)
+. .+++|++|+++.+ ...+ .+...+ ..+++|++|.+.++. +....+..+ ..+++|+.|+++.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~----i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE----EQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT----THHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC----CchHHHHHHHhCccCCCCCEEECCC
Confidence 43 6899999998531 1111 111122 247788888754322 111111122 2578899999988
Q ss_pred eeCcCCCCChhhhcccccccccCcceEEEEeccCC
Q 006588 575 IRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKE 609 (639)
Q Consensus 575 n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 609 (639)
|.+... ....+...+.++++|+.|+|+.|.++
T Consensus 289 n~L~d~---G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 289 GVLTDE---GARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCCBHH---HHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCChH---HHHHHHhhcccCCcceEEECCCCcCC
Confidence 764211 11123334567889999999988754
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=3.9e-05 Score=78.79 Aligned_cols=184 Identities=14% Similarity=0.066 Sum_probs=103.8
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
|.+.-.++.|-++..++|.+.+.-+..+ .-+.++-|.++|++|+|||.||+++++ +.... .+.++...
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~---fi~vs~s~ 278 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDAT---FIRVIGSE 278 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCE---EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCC---eEEEEhHH
Confidence 4455567899999999998865321100 024678899999999999999999988 34332 23333332
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------C--------chhhhHhhhcC
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI------K--------WEPFYHCLKKG 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~------~--------~~~l~~~l~~~ 160 (639)
+.....+ .........+...-...+++|++|+++..-.. . ...++..+...
T Consensus 279 --------------L~sk~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 279 --------------LVQKYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp --------------GCCCSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred --------------hhcccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 1111101 11111222222333467899999999743111 0 11222333222
Q ss_pred --CCCcEEEEEccchHHHh-h-h---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 --LHGSKILITTRNESIAS-M-M---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 --~~~~~ilvTsr~~~~~~-~-~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..+..||.||...+... . . .....+.+..-+.++..++|..+....... ...+ ...|++.|.|+-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIR----WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCC----HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCC----HHHHHHHCCCCC
Confidence 23445666776543211 1 1 235588999889999999998776433221 1112 466788887764
No 207
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.13 E-value=2.7e-05 Score=82.06 Aligned_cols=94 Identities=13% Similarity=0.031 Sum_probs=59.1
Q ss_pred EEEEEeCCCCCCccCchhhhHhhhcCCCCcEEE-EE---------cc----c-hHHHhhhcccceEECCCCCHHHHHHHH
Q 006588 135 FLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKIL-IT---------TR----N-ESIASMMRSTDVISIKELAEEECWALF 199 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~il-vT---------sr----~-~~~~~~~~~~~~~~l~~l~~~ea~~l~ 199 (639)
-++++|+++.......+.+.+.+....... +| .| +. . .-..+.......+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCE-EEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 399999999887666777888877765553 44 44 22 1 111122334456899999999999999
Q ss_pred HHHhhCCCCchhhhHHHHHHHHHHHHc-CCchhHH
Q 006588 200 KQLAFFGRSTEECEKLEQIGQRIARKC-KGLPLAA 233 (639)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal 233 (639)
..++........ .+.+..|++.+ +|.|...
T Consensus 376 ~~~~~~~~~~~~----~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 376 KIRAQTEGINIS----EEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHHTCCBC----HHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHhCCCCC----HHHHHHHHHHccCCCHHHH
Confidence 877532121111 12356777777 7777543
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.12 E-value=3.1e-05 Score=77.06 Aligned_cols=155 Identities=12% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCcccchhhHHHHHHHHhccCCc--------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 27 EEICGRVGERNALVSMLLCESSE--------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~--------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
..++|+++..+.+...+...-.. .....+.+.|+|++|+|||++|+.+++. .. ...+.+++....+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--l~---~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL--AN---APFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH--HT---CCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEcchhcccC
Confidence 46899999999999888641000 0113467899999999999999998773 22 23445555432211
Q ss_pred -------HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccC------------chhhhHhhhc
Q 006588 99 -------FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIK------------WEPFYHCLKK 159 (639)
Q Consensus 99 -------~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~------------~~~l~~~l~~ 159 (639)
......+...... .+.. .+++.+|+||+++...... ...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-------------AIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-------------CHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred CccCccHHHHHHHHHHHhhH-------------HHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcC
Confidence 1112222111100 0000 1235799999998764333 3445444443
Q ss_pred C----------CCCcEEEEEcc----ch-HHH-hhhccc-ceEECCCCCHHHHHHHHHH
Q 006588 160 G----------LHGSKILITTR----NE-SIA-SMMRST-DVISIKELAEEECWALFKQ 201 (639)
Q Consensus 160 ~----------~~~~~ilvTsr----~~-~~~-~~~~~~-~~~~l~~l~~~ea~~l~~~ 201 (639)
. ..+..+|.|+. .. .+. ...... ..+.+.+++.++..+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred CeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 2 12455555542 11 111 111222 4699999999999998874
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=2.5e-05 Score=79.31 Aligned_cols=184 Identities=14% Similarity=0.040 Sum_probs=103.4
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
.|.+.-.++.|-++..++|.+.+.-+..+ .-+.++-|.++||+|+|||.||++++. +....| +.++..
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s 250 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGS 250 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESG
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHH
Confidence 34555566889999999998876532110 024567899999999999999999988 343332 233322
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHHH-HHHHHhcCCceEEEEEeCCCCCCc--------cC------chhhhHhhh
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSLL-ISIDESIAGKRFLLVLDDVWDGDY--------IK------WEPFYHCLK 158 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlDd~~~~~~--------~~------~~~l~~~l~ 158 (639)
+ +..... .+.+..+ ..+...-...+++|++|+++..-. .+ ...++..+.
T Consensus 251 ~--------------l~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 251 E--------------LIQKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp G--------------GCCSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred H--------------hhhccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 2 111110 1111222 222222245789999999864211 00 112333333
Q ss_pred cC--CCCcEEEEEccchHHHhh-h----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 159 KG--LHGSKILITTRNESIASM-M----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 159 ~~--~~~~~ilvTsr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.. ..+..||.||...+.... + .....+.+..-+.++..++|..+....... ...+ .+.|++.+.|+-
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCC----HHHHHHHCCSCC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCC----HHHHHHhCCCCC
Confidence 22 234567777765543221 1 124478888889999999998776433221 1112 466777777754
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.11 E-value=1.8e-05 Score=89.36 Aligned_cols=159 Identities=16% Similarity=0.137 Sum_probs=88.8
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh---c-CCceE-EEEeCCCCchH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR---Q-FDKIL-WVCVSETFDEF 99 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---~-f~~~~-wv~~~~~~~~~ 99 (639)
.-..++||+.++.++.+.|... ....+.|+|++|+|||++|+.+++...... . ....+ .+++...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------
T ss_pred CCCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----
Confidence 3356899999999999999743 346689999999999999999987421110 0 11122 2221111
Q ss_pred HHHHHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCCCcc-----CchhhhHhhhcC--CCCcEEEEEcc
Q 006588 100 RIAKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDGDYI-----KWEPFYHCLKKG--LHGSKILITTR 171 (639)
Q Consensus 100 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~~-----~~~~l~~~l~~~--~~~~~ilvTsr 171 (639)
+.... .....+.....+.+.+ ..++.+|++|+++..... .-......+... .....+|.+|.
T Consensus 254 ---------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 254 ---------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp ----------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEEC
T ss_pred ---------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeC
Confidence 00011 1122333333333322 345799999999764110 111122222221 13445666665
Q ss_pred chHHHh-------hhcccceEECCCCCHHHHHHHHHHHh
Q 006588 172 NESIAS-------MMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 172 ~~~~~~-------~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
..+... .......+.+...+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 443221 11234478999999999999887654
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.5e-05 Score=81.89 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=99.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
|.+.-.++.|-++..++|.+.+..+..+ .-+.++-+.++||+|+|||.||+++++ +.... .+.++..+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~---~~~v~~~~ 241 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAA---FIRVNGSE 241 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCE---EEEEEGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---eEEEecch
Confidence 4445566899999999998876532210 024567899999999999999999988 33322 33344332
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCC-------Cc-cC------chhhhHhhhcC
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDG-------DY-IK------WEPFYHCLKKG 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~-------~~-~~------~~~l~~~l~~~ 160 (639)
- ..... ......+...+...-...++++++|+++.. .. .+ ...++..+...
T Consensus 242 l--------------~~~~~-Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 242 F--------------VHKYL-GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp T--------------CCSSC-SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred h--------------hcccc-chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 1 11110 111112222222233457899999998421 00 01 22233333332
Q ss_pred --CCCcEEEEEccchHHH-hh-h---cccceEECCCC-CHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 --LHGSKILITTRNESIA-SM-M---RSTDVISIKEL-AEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 --~~~~~ilvTsr~~~~~-~~-~---~~~~~~~l~~l-~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
..+..||.||...+.. .. . .....+++..+ +.++..++|..+..+.... ...+ ...+++.+.|+-
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCC----HHHHHHHTTTCC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccC----HHHHHHHCCCCC
Confidence 3455677777654321 11 1 22346788766 5555566776665432221 1112 467777777754
No 212
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.09 E-value=6.3e-06 Score=80.19 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=71.1
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
.+++|++..+.++.+.+..... ....|.|+|++|+|||++|+.+++. ....-...+.+++.... . +....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~--~~~~~~~~~~v~~~~~~-~-~~~~~-- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-E-NLLDS-- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT--STTTTSCEEEEEGGGSC-H-HHHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh--cCccCCCeEEEecCCCC-h-hHHHH--
Confidence 4689999999998887765432 3456899999999999999988763 22111235566666432 1 21111
Q ss_pred HHccCCCCCc-cc-HHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEEccc
Q 006588 107 EALTGSTSNL-DA-LQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILITTRN 172 (639)
Q Consensus 107 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTsr~ 172 (639)
.+.+...+. .. .......+.. ...-+|+||+++.........+...+... ....++|.||..
T Consensus 76 -~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 -ELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -HHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred -HhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 221111000 00 0000001111 12348999999887654445566555532 135678888775
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.08 E-value=0.00031 Score=70.56 Aligned_cols=180 Identities=17% Similarity=0.205 Sum_probs=96.6
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..-..++|++..++.+...+...... ......++|+|++|+||||||+.++.. ....+ ...+ .....
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~-~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~---~~~s-g~~~~------ 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI---HVTS-GPVLV------ 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE---EEEE-TTTCC------
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEe-chHhc------
Confidence 34456899998888888877643100 113467999999999999999998873 32211 1111 11100
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC------------------CCcE
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL------------------HGSK 165 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~------------------~~~~ 165 (639)
...+....+. .+ .++.++++|+++.......+.+...+.... +...
T Consensus 89 --------------~~~~l~~~~~-~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 89 --------------KQGDMAAILT-SL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp --------------SHHHHHHHHH-HC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred --------------CHHHHHHHHH-Hc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 0111111111 12 234577889886653322222322222211 1122
Q ss_pred EE-EEccchHHHhhh-cc-cceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 166 IL-ITTRNESIASMM-RS-TDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 166 il-vTsr~~~~~~~~-~~-~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
++ .|++...+.... .. .-.+.++..+.++..+++.+.+......- ..+.+..|++.++|.|..+.-+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~----~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI----EDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHhcCCChHHHHHH
Confidence 22 233332221111 11 23578999999999999988764322211 1234788999999999755443
No 214
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.05 E-value=4.5e-06 Score=82.78 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=87.5
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++. ....-...+.+++..... ++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~--~~~~~~~~v~v~~~~~~~--~l~~--- 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC--SARSDRPLVTLNCAALNE--SLLE--- 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH--SSCSSSCCCEEECSSCCH--HHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh--CcccCCCeEEEeCCCCCh--HHHH---
Confidence 4689999999999998876543 3456899999999999999988762 111112345566654322 2211
Q ss_pred HHccCCCCCc-cc-HHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccch
Q 006588 107 EALTGSTSNL-DA-LQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRNE 173 (639)
Q Consensus 107 ~~l~~~~~~~-~~-~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~~ 173 (639)
..+.+...+. .. .......+... ..-+|+||+++.........+...+.... ...+||.||...
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred HHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 2222221100 00 00000111111 12468999998876554555666665431 346777777653
Q ss_pred H---HH---------hhhcccceEECCCCC--HHHHHHHHH
Q 006588 174 S---IA---------SMMRSTDVISIKELA--EEECWALFK 200 (639)
Q Consensus 174 ~---~~---------~~~~~~~~~~l~~l~--~~ea~~l~~ 200 (639)
. +. ..+. ...+.++++. .++...++.
T Consensus 148 l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 148 LAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 1 11 1111 2357788887 455555544
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.3e-05 Score=82.43 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=103.0
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
.|...-.++.|-++..++|.+.+..+..+ .-+.++-|.+|||||+|||.||++++. +.... .+.++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~---f~~v~~s 249 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNAT---FLKLAAP 249 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE---EEEEEGG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCC---EEEEehh
Confidence 34455566899999999998774432110 024568899999999999999999988 33322 2333332
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHHHHH-HHHhcCCceEEEEEeCCCCC-------Ccc---C----chhhhHhhh
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSLLIS-IDESIAGKRFLLVLDDVWDG-------DYI---K----WEPFYHCLK 158 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDd~~~~-------~~~---~----~~~l~~~l~ 158 (639)
. +..... ...+..+.. +...-...+++|++|+++.. ... . ...++..+.
T Consensus 250 ~--------------l~~~~v--Gese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 250 Q--------------LVQMYI--GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp G--------------GCSSCS--SHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred h--------------hhhccc--chHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 2 111110 111111221 22222346899999998531 000 0 122333333
Q ss_pred cC--CCCcEEEEEccchHHHh-hh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 159 KG--LHGSKILITTRNESIAS-MM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 159 ~~--~~~~~ilvTsr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.. ..+..||.||...+... .+ .....+.++.-+.++..++|..+........ ..+ ...|++.+.|+-
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-DIN----WQELARSTDEFN 387 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-CCC----HHHHHHHCSSCC
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-cCC----HHHHHHhCCCCC
Confidence 33 23456666776544222 11 2245789998899999999987664322211 111 467788887754
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.04 E-value=7.4e-06 Score=92.27 Aligned_cols=146 Identities=15% Similarity=0.194 Sum_probs=82.1
Q ss_pred CCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-------CCceEEEEeCCCCch
Q 006588 26 EEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-------FDKILWVCVSETFDE 98 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-------f~~~~wv~~~~~~~~ 98 (639)
-..+|||+++++++.+.+... ...-+.|+|++|+|||++|+.+++. .... -..++.+++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~g----- 245 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG----- 245 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEeccc-----
Confidence 346999999999999999753 3445899999999999999999874 2111 1112222220
Q ss_pred HHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHHH--
Q 006588 99 FRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESIA-- 176 (639)
Q Consensus 99 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~~-- 176 (639)
....+. -......... .....++.+|++|.- . .....+...+.. ...++|.+|......
T Consensus 246 --------~~~~G~--~e~~l~~~~~---~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~ 306 (758)
T 3pxi_A 246 --------TKYRGE--FEDRLKKVMD---EIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKY 306 (758)
T ss_dssp -----------------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred --------ccccch--HHHHHHHHHH---HHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHH
Confidence 000000 0112222222 223467889999921 1 111223333332 245666666544311
Q ss_pred -----hhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 177 -----SMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 177 -----~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
........+.+...+.++..+++....
T Consensus 307 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111234579999999999999998654
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=5.5e-06 Score=75.69 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=75.7
Q ss_pred ccccCCCCccEEEeecc-ccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCc----ccccccccCCCcEEeccCCCCcc
Q 006588 406 ISTCRTKRIRSLLIECR-RFDHSSLNGEILEELFRELTSLRALDFPSLYLPSE----IPRNIKKLIHLRYLNLSGQKIEK 480 (639)
Q Consensus 406 ~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~~~l~~ 480 (639)
..+...+.|+.|++.+| .+...+. ......+...++|++|+|++|.+... +...+...++|++|+|++|.|+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~--~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTL--KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHH--HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHH--HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34566778888877766 5431111 11233356677888888888885432 34445556778888888888773
Q ss_pred -----cchhhhcCCCccEEec--CCCCCccc----cchhhhhcccCceeecCCCCc
Q 006588 481 -----LPEALCELYNLEKLDI--CSCSCLKE----LPEGIGKLINMKYLLNRDTDS 525 (639)
Q Consensus 481 -----lp~~i~~l~~L~~L~l--~~~~~~~~----lp~~~~~l~~L~~L~l~~n~~ 525 (639)
+...+...+.|+.|+| ++|.+... +...+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556667778888888 66774432 334455567788888888754
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.03 E-value=2.4e-06 Score=83.36 Aligned_cols=184 Identities=14% Similarity=0.093 Sum_probs=96.3
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCc------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF 96 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 96 (639)
...-.+++|.++..+++.+.+...... ..+..+-+.|+|++|+|||++|+.+++. ....| +.+++..-.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~ 81 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPF---FSMGGSSFI 81 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCC---CCCCSCTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEechHHHH
Confidence 344567999999999998876521100 0112344889999999999999999873 33222 112222110
Q ss_pred chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc---------------CchhhhHhhhcCC
Q 006588 97 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI---------------KWEPFYHCLKKGL 161 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~---------------~~~~l~~~l~~~~ 161 (639)
. .+.... ........... ....+.+|+||+++..... ....++..+....
T Consensus 82 ~----------~~~~~~--~~~~~~~~~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 E----------MFVGLG--ASRVRDLFETA---KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp T----------SCSSSC--SSSSSTTHHHH---HHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred H----------hhcchH--HHHHHHHHHHH---HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0 011111 11111111211 1235689999999654211 1233443333221
Q ss_pred ---CCcEEEEEccchHHH-h-hh---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 162 ---HGSKILITTRNESIA-S-MM---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 162 ---~~~~ilvTsr~~~~~-~-~~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
....||.||...... . .. .....+.+...+.++..+++........... ... ...+++.+.|.|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLAN-DVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCS-SCC----TTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCC-ccC----HHHHHHHcCCCCH
Confidence 234566666654321 1 11 1234688889999999999987664322111 111 2446666666653
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=1.3e-05 Score=77.19 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=53.4
Q ss_pred hhCCceeEEecCCCCCCC--cccccccccCCCcEEeccCCCCcccchhhhcCC--CccEEecCCCCCccccch-------
Q 006588 439 RELTSLRALDFPSLYLPS--EIPRNIKKLIHLRYLNLSGQKIEKLPEALCELY--NLEKLDICSCSCLKELPE------- 507 (639)
Q Consensus 439 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~lp~------- 507 (639)
..+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.|+.+ ..+..+. +|+.|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 567788888888888655 4456666778888888888887765 2344444 777777777776555542
Q ss_pred hhhhcccCceee
Q 006588 508 GIGKLINMKYLL 519 (639)
Q Consensus 508 ~~~~l~~L~~L~ 519 (639)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666664
No 220
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.99 E-value=5.8e-05 Score=78.94 Aligned_cols=182 Identities=13% Similarity=0.076 Sum_probs=101.8
Q ss_pred cCCCCcccchhhHHHHHHHHhccCCc------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 24 IDEEEICGRVGERNALVSMLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 24 ~~~~~~vgR~~~~~~l~~~L~~~~~~------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
..-.+++|.++..+++.+........ ..+.++-|.|+|++|+|||+||+.++.. ... ..+.+++.+-..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~---~f~~is~~~~~~ 87 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANV---PFFHISGSDFVE 87 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTC---CEEEEEGGGTTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCC---CeeeCCHHHHHH
Confidence 34456999999888887765432100 0112345899999999999999999873 321 233444332211
Q ss_pred hHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc--------------CchhhhHhhhcC--C
Q 006588 98 EFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI--------------KWEPFYHCLKKG--L 161 (639)
Q Consensus 98 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~--------------~~~~l~~~l~~~--~ 161 (639)
. +. + .........+.......+.+|+||+++..... ....++..+... .
T Consensus 88 ~----------~~----g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 88 L----------FV----G-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp C----------CT----T-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred H----------Hh----c-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 00 0 11112223333444567899999999663211 122333333322 2
Q ss_pred CCcEEEEEccchHHHh-h-h---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 162 HGSKILITTRNESIAS-M-M---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 162 ~~~~ilvTsr~~~~~~-~-~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.+..||.||...+... . . .....+.+...+.++..+++..+....... ...+ ...+++.+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhh----HHHHHHhcCCCc
Confidence 3556777776654322 1 1 123488899999988888887766432211 1111 355788888877
No 221
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.97 E-value=4.7e-05 Score=84.33 Aligned_cols=185 Identities=12% Similarity=0.061 Sum_probs=106.0
Q ss_pred cccCCCCcccchhhHHHHHHHHhcc----CCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCE----SSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~----~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
+.+.-.++.|-++..++|++++.-+ ... .-+.++-|.++|++|+|||+||+++++. .... .+.+++.+
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~---~~~v~~~~ 273 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE 273 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCE---EEEEEHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCe---EEEEEhHH
Confidence 3444456889999999998876431 100 1245688999999999999999999883 3322 33443321
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc------cC-----chhhhHhhhcCC--
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY------IK-----WEPFYHCLKKGL-- 161 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~------~~-----~~~l~~~l~~~~-- 161 (639)
+..... ......+...+.......+++|+||+++..-. .+ ...+...+....
T Consensus 274 ----------l~sk~~-----gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 274 ----------IMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ----------HHSSCT-----THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred ----------hhcccc-----hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 111111 12222233334444467799999999965311 11 122333333221
Q ss_pred CCcEEEEEccchHH-Hhhh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCchh
Q 006588 162 HGSKILITTRNESI-ASMM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLPL 231 (639)
Q Consensus 162 ~~~~ilvTsr~~~~-~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 231 (639)
.+..||.||...+. ...+ .....+++..-+.++-.+++..+...... ....+ ...|++.+.|+--
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCCH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCCH
Confidence 24456666665432 1211 22457899999999999999876632221 11122 4678888877753
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.91 E-value=2.2e-05 Score=88.46 Aligned_cols=156 Identities=12% Similarity=0.229 Sum_probs=94.7
Q ss_pred CCcccchhhHHHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAK 103 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 103 (639)
..++|.+..++.+.+.+....... .++...+.++|++|+|||++|+.+++. ....-...+.++++.........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccccc-
Confidence 468999999999988887543211 123347999999999999999999873 33333456667765432111000
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEEccc
Q 006588 104 AMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILITTRN 172 (639)
Q Consensus 104 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTsr~ 172 (639)
.......+. ..+..+|+||+++.........+...+... ...+.||+||..
T Consensus 568 ---------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ---------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 111111222 123459999999887666666677666542 235678888872
Q ss_pred -----hHH---------Hhhhcc-cceEECCCCCHHHHHHHHHHHh
Q 006588 173 -----ESI---------ASMMRS-TDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 173 -----~~~---------~~~~~~-~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
... ...... ...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 110 011122 3588999999998888876644
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.90 E-value=7.8e-06 Score=71.57 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=52.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
...++|+|++|+|||||++.++... ...-..+++++..+.... .. ..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~--~~~g~~~~~~~~~~~~~~-----------------------------~~-~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA--LEAGKNAAYIDAASMPLT-----------------------------DA-AFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH--HTTTCCEEEEETTTSCCC-----------------------------GG-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEcHHHhhHH-----------------------------HH-HhC
Confidence 4579999999999999999998843 222123677765543221 01 124
Q ss_pred eEEEEEeCCCCCCccCchhhhHhhhcC-CCCc-EEEEEccc
Q 006588 134 RFLLVLDDVWDGDYIKWEPFYHCLKKG-LHGS-KILITTRN 172 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~~~~l~~~l~~~-~~~~-~ilvTsr~ 172 (639)
+-+|||||+..........+...+... ..+. .+|+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 568899999765433333444444322 1233 48888874
No 224
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.87 E-value=0.00012 Score=72.13 Aligned_cols=134 Identities=15% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh-c
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES-I 130 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l 130 (639)
+.++.+.|+|++|+|||+||+.+++. ... ..+.+++++ + .....+ .....+.+......+. -
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~--l~~---~~i~v~~~~------l----~~~~~g--~~~~~i~~~f~~a~~~~~ 96 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK--MGI---NPIMMSAGE------L----ESGNAG--EPAKLIRQRYREAAEIIR 96 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH--HTC---CCEEEEHHH------H----HCC-----HHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeHHH------h----hhccCc--hhHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999883 332 234444422 1 000000 0001111111111111 1
Q ss_pred CCceEEEEEeCCCCCCcc-------------CchhhhHhhhc-------------CCCCcEEEEEccchH-HHhh-h---
Q 006588 131 AGKRFLLVLDDVWDGDYI-------------KWEPFYHCLKK-------------GLHGSKILITTRNES-IASM-M--- 179 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~~-------------~~~~l~~~l~~-------------~~~~~~ilvTsr~~~-~~~~-~--- 179 (639)
..++.+|+||+++..... ....+...+.. ...+..||.||...+ +... .
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~ 176 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 176 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHH
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCC
Confidence 557899999999643210 01333333321 223566888887542 1111 1
Q ss_pred cccceEECCCCCHHHHHHHHHHHhh
Q 006588 180 RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 180 ~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
.....+.++ +.++..+++.....
T Consensus 177 R~d~~i~~P--~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 177 RMEKFYWAP--TREDRIGVCTGIFR 199 (293)
T ss_dssp HEEEEEECC--CHHHHHHHHHHHHG
T ss_pred CCceeEeCc--CHHHHHHHHHHhcc
Confidence 112345543 88888889887765
No 225
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=9.6e-06 Score=74.08 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=71.5
Q ss_pred hhHHHHHhhCCceeEEecCCC-CCCCc----ccccccccCCCcEEeccCCCCcc-----cchhhhcCCCccEEecCCCCC
Q 006588 432 EILEELFRELTSLRALDFPSL-YLPSE----IPRNIKKLIHLRYLNLSGQKIEK-----LPEALCELYNLEKLDICSCSC 501 (639)
Q Consensus 432 ~~~~~~~~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 501 (639)
+.....+...+.|+.|+|++| .+... +...+...++|++|+|++|.++. +...+...+.|++|+|++|.+
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 445556788999999999999 75432 34556667889999999999872 455666778899999999985
Q ss_pred ccc----cchhhhhcccCceeec--CCCCcc
Q 006588 502 LKE----LPEGIGKLINMKYLLN--RDTDSV 526 (639)
Q Consensus 502 ~~~----lp~~~~~l~~L~~L~l--~~n~~~ 526 (639)
... +...+...++|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 432 4555677788999999 777654
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.72 E-value=2.7e-05 Score=77.26 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCCccc----chhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH-hcCCceEEEEeC
Q 006588 26 EEEICG----RVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK-RQFDKILWVCVS 93 (639)
Q Consensus 26 ~~~~vg----R~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~ 93 (639)
-.+|++ +...++.+.+++..... ...+.+.|+|++|+|||+||.++++. .. .+...++++++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHFP 190 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEHH
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEHH
Confidence 344654 34455566666664321 12468999999999999999999884 33 333456666553
No 227
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.72 E-value=6e-05 Score=84.99 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=94.1
Q ss_pred CCCcccchhhHHHHHHHHhccCCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHH
Q 006588 26 EEEICGRVGERNALVSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIA 102 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 102 (639)
...++|.+..++.+...+.....+ ..+....+.++|++|+|||++|+.+++. .. ...+.++++.......
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC--
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh--
Confidence 346899999999888877643210 0234468999999999999999998773 22 3345556544322100
Q ss_pred HHHHHHccCCCCCcc---cHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEE
Q 006588 103 KAMLEALTGSTSNLD---ALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILI 168 (639)
Q Consensus 103 ~~il~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilv 168 (639)
...+.+...+-. ....+...+. +.+..+|+||+++.........+...+.... ..+.||+
T Consensus 530 ---~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ 603 (758)
T 1r6b_X 530 ---VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_dssp ---CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred ---HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEE
Confidence 001111111110 0111222222 2346899999998876555566666665321 2455777
Q ss_pred EccchH----------------------H-----Hhhhcc-cceEECCCCCHHHHHHHHHHHh
Q 006588 169 TTRNES----------------------I-----ASMMRS-TDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 169 Tsr~~~----------------------~-----~~~~~~-~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
||.... + ...... ...+.+.+++.++...++....
T Consensus 604 tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp EECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 776410 0 011122 2468888888888877776644
No 228
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.67 E-value=3.7e-05 Score=73.93 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=54.1
Q ss_pred cccCCCcEEeccCCCCcccc---hhhhcCCCccEEecCCCCCccccchhhhhcc--cCceeecCCCCccccccc------
Q 006588 463 KKLIHLRYLNLSGQKIEKLP---EALCELYNLEKLDICSCSCLKELPEGIGKLI--NMKYLLNRDTDSVRYMPV------ 531 (639)
Q Consensus 463 ~~l~~L~~L~l~~~~l~~lp---~~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~n~~~~~~p~------ 531 (639)
.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.+.+ + ..+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45778888888888887543 556788888888888888443 3 2244444 788888888887665552
Q ss_pred -cCCCCcCCcccc
Q 006588 532 -GIARLKSLRTLE 543 (639)
Q Consensus 532 -~~~~l~~L~~L~ 543 (639)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244566666665
No 229
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.67 E-value=0.00014 Score=78.20 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=81.5
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
.+++|-++..+++.+.+.-..-...-....++|+|++|+||||||+.++.. .... ...+++.......++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~---~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRK---FVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCE---EEEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCC---eEEEEecccchhhhhhhHHH
Confidence 347888887777765433111000224568999999999999999988773 3222 22333333222222111111
Q ss_pred HHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc----CchhhhHhhhcCC---------------CCcEEE
Q 006588 107 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI----KWEPFYHCLKKGL---------------HGSKIL 167 (639)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~----~~~~l~~~l~~~~---------------~~~~il 167 (639)
...+. ........+... ....-+++||+++..... ....++..+.... ....||
T Consensus 156 ~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11111 011111222222 223338889999765432 1233444442111 345667
Q ss_pred EEccchHH--HhhhcccceEECCCCCHHHHHHHHHHHh
Q 006588 168 ITTRNESI--ASMMRSTDVISIKELAEEECWALFKQLA 203 (639)
Q Consensus 168 vTsr~~~~--~~~~~~~~~~~l~~l~~~ea~~l~~~~~ 203 (639)
.||..... .........+.+..++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 67665321 1122334578999999999988887754
No 230
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.6e-05 Score=69.52 Aligned_cols=84 Identities=10% Similarity=0.041 Sum_probs=40.1
Q ss_pred CCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCC-ccccccccc----CCCcEEeccCCC-Ccc-cchh
Q 006588 412 KRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPS-EIPRNIKKL----IHLRYLNLSGQK-IEK-LPEA 484 (639)
Q Consensus 412 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l----~~L~~L~l~~~~-l~~-lp~~ 484 (639)
-+|+.|+++++.+...+ ... +.++++|+.|+|++|..++ .--..++.+ ++|+.|+|++|. +++ --..
T Consensus 61 ~~L~~LDLs~~~Itd~G-----L~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-----FDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGG-----GGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHH-----HHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 35666666655542222 122 3556666666666664222 112223332 346666666653 551 1123
Q ss_pred hhcCCCccEEecCCCCC
Q 006588 485 LCELYNLEKLDICSCSC 501 (639)
Q Consensus 485 i~~l~~L~~L~l~~~~~ 501 (639)
+..+++|+.|++++|..
T Consensus 135 L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp GGGCTTCCEEEEESCTT
T ss_pred HhcCCCCCEEECCCCCC
Confidence 44555566666555543
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.65 E-value=0.00061 Score=71.67 Aligned_cols=183 Identities=12% Similarity=0.086 Sum_probs=98.1
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCc---C---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSE---Q---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~---~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
+.....+++|.++...++.+........ . -+-.+-++|+|++|+|||+||+.++.. .. ...+.++..+-
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~---~~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSDF 100 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TT---CCEEEEEGGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEehhHH
Confidence 4556678999998888777765422110 0 011234999999999999999998773 22 23444544321
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc-CCceEEEEEeCCCCCCcc----------C----chhhhHhhhcC
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI-AGKRFLLVLDDVWDGDYI----------K----WEPFYHCLKKG 160 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~~~~----------~----~~~l~~~l~~~ 160 (639)
.. ... ......+..+.+.. ...+.++++|+++..... + ...++..+...
T Consensus 101 ~~--------------~~~--g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 101 VE--------------MFV--GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp TS--------------SCT--THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred HH--------------hhh--hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 10 000 01111111122211 234689999999643211 0 12233333322
Q ss_pred C--CCcEEEEEccchHHHh-hh----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 161 L--HGSKILITTRNESIAS-MM----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 161 ~--~~~~ilvTsr~~~~~~-~~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
. ....++.+|..++... .+ .....+.+...+.++-.+++..+........ ... ...++..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-DVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-SST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-HHH----HHHHHHhcCCCC
Confidence 2 2344555566554322 11 2245889999999999999877653222111 111 356777787776
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.62 E-value=6.9e-05 Score=75.43 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=89.5
Q ss_pred CCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 25 DEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 25 ~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
....++|+++.++.+...+... +-+.|+|++|+|||+||+.+++. ... ....+++.......++...
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~---~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDL---DFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTC---CEEEEECCTTCCHHHHHEE
T ss_pred hccceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCC---CeEEEecCCCCChhhcCCc
Confidence 3457999999999999888743 35999999999999999988762 222 2334444433333332111
Q ss_pred HHHHccCCCCCcccHHHHHHHHHHhcCC--ceEEEEEeCCCCCCccCchhhhHhhhcC-----------CCCcEEEEEcc
Q 006588 105 MLEALTGSTSNLDALQSLLISIDESIAG--KRFLLVLDDVWDGDYIKWEPFYHCLKKG-----------LHGSKILITTR 171 (639)
Q Consensus 105 il~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDd~~~~~~~~~~~l~~~l~~~-----------~~~~~ilvTsr 171 (639)
. ......+.. ....+ ...++++|+++.........+...+... .....++.|+.
T Consensus 92 ~---~~~~~~~~~----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 92 M---IYNQHKGNF----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp E---EEETTTTEE----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred e---eecCCCCce----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 0 000000000 00001 1258999999876554445555554431 23455555655
Q ss_pred chH------H-Hhhhcccc-eEECCCCCHHHHHHHHHHHhh
Q 006588 172 NES------I-ASMMRSTD-VISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 172 ~~~------~-~~~~~~~~-~~~l~~l~~~ea~~l~~~~~~ 204 (639)
... + ........ .+.+...+.++-.+++.....
T Consensus 159 p~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 221 1 11122333 589999999999999988764
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.62 E-value=0.00021 Score=67.03 Aligned_cols=87 Identities=22% Similarity=0.189 Sum_probs=54.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHcc-----------CCC-CCcccHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALT-----------GST-SNLDALQ 120 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~-----------~~~-~~~~~~~ 120 (639)
...+++|.|++|+|||||+..++. ..-..++|++.....+...+.. ++..++ ... .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456999999999999999998876 2235788998876555544332 333221 111 1112223
Q ss_pred HHHHHHHHhcCCceEEEEEeCCCCC
Q 006588 121 SLLISIDESIAGKRFLLVLDDVWDG 145 (639)
Q Consensus 121 ~~~~~l~~~l~~~~~LlvlDd~~~~ 145 (639)
+..+.+......++-++|+|.+...
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 3445555555445789999998654
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=0.00014 Score=82.87 Aligned_cols=135 Identities=13% Similarity=0.231 Sum_probs=76.4
Q ss_pred CcccchhhHHHHHHHHhccCCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHH
Q 006588 28 EICGRVGERNALVSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKA 104 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 104 (639)
.++|.+..++.+...+.....+ ..++...+.|+|++|+|||++|+.+++. ....-...+.+++........
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~---- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA---- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG----
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH----
Confidence 4799999999998888654311 0223468999999999999999998873 322223445566554322110
Q ss_pred HHHHccCCCC---CcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEc
Q 006588 105 MLEALTGSTS---NLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITT 170 (639)
Q Consensus 105 il~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTs 170 (639)
...+.+... +..........+.. .+.-+|+||+++.......+.+...+.... .++.||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011111000 00111122222222 335699999998876555666766665431 244577887
Q ss_pred cc
Q 006588 171 RN 172 (639)
Q Consensus 171 r~ 172 (639)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.51 E-value=0.00026 Score=79.66 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=89.7
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCc-------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~-------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
...-.+++|.++.+++|.+++.....+ .-+..+.|+|+|++|+||||||+.++.. .... .+.++...
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~---~i~v~~~~- 273 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGPE- 273 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCE---EEEEEHHH-
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCc---EEEEEchH-
Confidence 344456899999999999988641100 0234567999999999999999988762 2222 23444321
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCcc------C-----chhhhHhhhcCC--C
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYI------K-----WEPFYHCLKKGL--H 162 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~------~-----~~~l~~~l~~~~--~ 162 (639)
+..... ..........+.......+.++++|+++..-.. + ...+...+.... .
T Consensus 274 -------------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 274 -------------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp -------------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred -------------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 111000 011112222233333346789999999543111 0 122333333222 3
Q ss_pred CcEEEEEccchH-HHhhh----cccceEECCCCCHHHHHHHHHHHhh
Q 006588 163 GSKILITTRNES-IASMM----RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 163 ~~~ilvTsr~~~-~~~~~----~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
...++.||.... +...+ .....+.+...+.++..+++...+.
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 445666666542 21111 1234678888899999999987654
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.50 E-value=0.00076 Score=64.80 Aligned_cols=183 Identities=12% Similarity=0.084 Sum_probs=91.3
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCcC------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSEQ------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF 96 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~~------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 96 (639)
...-.+++|.++...++.+......... -.-.+-++|+|++|+|||||++.++.. .. ...+.++..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~--~~---~~~i~~~~~--- 83 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGS--- 83 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHH---
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hC---CCEEEeeHH---
Confidence 3444578898877777666543211000 001223999999999999999998773 22 233333321
Q ss_pred chHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC----------ccC----chhhhHhhhcCC-
Q 006588 97 DEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD----------YIK----WEPFYHCLKKGL- 161 (639)
Q Consensus 97 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~----~~~l~~~l~~~~- 161 (639)
+ +..... . .........+.......+.++++|+++... ... ...+...+....
T Consensus 84 ---~----~~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 ---D----FVEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp ---H----HHHSCT----T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred ---H----HHHHHh----h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 111110 0 011111222222223457899999994310 001 122333333222
Q ss_pred CC-cEEEEEccchHHHhh-h----cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 162 HG-SKILITTRNESIASM-M----RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 162 ~~-~~ilvTsr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.. ..++.+|..+..... . .....+.+...+.++-.+++......... ..... ...+++.+.|+-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCC-CcccC----HHHHHHHcCCCC
Confidence 22 334445554433211 1 22457899999999888888776532211 11111 345667776654
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.41 E-value=0.00033 Score=63.34 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=71.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC---CchHHHHHHHHHHc------cCCCCCc-----cc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET---FDEFRIAKAMLEAL------TGSTSNL-----DA 118 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l------~~~~~~~-----~~ 118 (639)
..+.|.|++..|.||||.|...+. +..++--.|.++...+. .+...++..+.-.+ +....+. ..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 346788888888999999977776 44444456777765442 22233333321000 0000100 11
Q ss_pred HHHHHHHHHHhcCCceE-EEEEeCCCC---CCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 119 LQSLLISIDESIAGKRF-LLVLDDVWD---GDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 119 ~~~~~~~l~~~l~~~~~-LlvlDd~~~---~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.........+.+.+.++ |||||++.. ......+.+...+........+|+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 22233334455555554 999999843 24567778888888877888899999974
No 238
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.36 E-value=0.0025 Score=62.03 Aligned_cols=184 Identities=12% Similarity=0.077 Sum_probs=93.4
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcC------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQ------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
+.....+++|.++..+++.+......... -.-.+-++|+|++|+|||||++.++.. .. ...+.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~--~~---~~~i~~~~~~- 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--AR---VPFITASGSD- 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH--TT---CCEEEEEHHH-
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH--cC---CCEEEecHHH-
Confidence 45556679999988777776543221000 001123999999999999999998773 22 2334443221
Q ss_pred CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCC----------ccCc----hhhhHhhhcCC
Q 006588 96 FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGD----------YIKW----EPFYHCLKKGL 161 (639)
Q Consensus 96 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~----------~~~~----~~l~~~l~~~~ 161 (639)
+..... . .........+.......+.++++|+++... .... ..+...+....
T Consensus 109 ---------~~~~~~----~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 109 ---------FVEMFV----G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp ---------HHHSTT----T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred ---------HHHHHh----h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 111110 0 001111122222223457899999995310 0011 12222222221
Q ss_pred -CC-cEEEEEccchHHHh-----hhcccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCch
Q 006588 162 -HG-SKILITTRNESIAS-----MMRSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGLP 230 (639)
Q Consensus 162 -~~-~~ilvTsr~~~~~~-----~~~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 230 (639)
.. ..++.+|..+.... .......+.+...+.++-.+++..+...... ..... ...+++.+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-AEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-CcccC----HHHHHHHcCCCC
Confidence 22 23444555443211 1123458899999999999988876532211 11111 355777777765
No 239
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.34 E-value=0.003 Score=63.62 Aligned_cols=158 Identities=8% Similarity=-0.052 Sum_probs=101.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHH-hcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDE-SIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~ 131 (639)
-.++..++|+.|.||++.+..+.+... ...|+....+..... .++.++.+.+.. -+-
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCc
Confidence 457999999999999999988877421 223322111112211 223333333221 123
Q ss_pred CceEEEEEeCCCC-CCccCchhhhHhhhcCCCCcEEEEEccc-------hHHHhh-hcccceEECCCCCHHHHHHHHHHH
Q 006588 132 GKRFLLVLDDVWD-GDYIKWEPFYHCLKKGLHGSKILITTRN-------ESIASM-MRSTDVISIKELAEEECWALFKQL 202 (639)
Q Consensus 132 ~~~~LlvlDd~~~-~~~~~~~~l~~~l~~~~~~~~ilvTsr~-------~~~~~~-~~~~~~~~l~~l~~~ea~~l~~~~ 202 (639)
+++-++|+|+++. ......+.+...+....+++.+|+++.. ..+... ......++..+++..+....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5567889999977 6556677788888877778877776643 123332 334568899999999999988887
Q ss_pred hhCCCCchhhhHHHHHHHHHHHHcCCchhHHHHH
Q 006588 203 AFFGRSTEECEKLEQIGQRIARKCKGLPLAAKTM 236 (639)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 236 (639)
+...+.... .+.+..+++.++|....+...
T Consensus 155 ~~~~g~~i~----~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLELD----DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEEC----HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCCC----HHHHHHHHHHhchHHHHHHHH
Confidence 754333222 234788999999988776543
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.34 E-value=0.00017 Score=79.88 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=88.0
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
.|...-.+..|-++..++|.+.+..+..+. ....+-+.++|++|+|||.+|++++.. .. .-++.+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~-----~~f~~v~ 543 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQ-----ANFISIK 543 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TT-----CEEEECC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hC-----CceEEec
Confidence 344555667888888888888765432211 234567899999999999999999873 32 2233332
Q ss_pred CCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCc----------cC----chhhhHhhhc
Q 006588 94 ETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDY----------IK----WEPFYHCLKK 159 (639)
Q Consensus 94 ~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~----------~~----~~~l~~~l~~ 159 (639)
. .+++....+. ........+...-+..+++|+||+++..-. .. ...++..+..
T Consensus 544 ~--------~~l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 544 G--------PELLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp H--------HHHHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred c--------chhhccccch-----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 1 1233322221 122233333333356799999999964210 01 2334444443
Q ss_pred CC--CCcEEEEEccchHHH-hh-h---cccceEECCCCCHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHHcCCc
Q 006588 160 GL--HGSKILITTRNESIA-SM-M---RSTDVISIKELAEEECWALFKQLAFFGRSTEECEKLEQIGQRIARKCKGL 229 (639)
Q Consensus 160 ~~--~~~~ilvTsr~~~~~-~~-~---~~~~~~~l~~l~~~ea~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 229 (639)
.. .+.-||.||..++.. .. + .....+.+..-+.++-.++|..+..+.... ...+ ...+++.+.|+
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC-----------------
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCC----HHHHHHhCCCC
Confidence 32 233344455433211 11 1 235578888778877778887665322211 1112 35566666654
No 241
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.32 E-value=0.00018 Score=72.82 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=36.0
Q ss_pred cccCCCCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 22 SLIDEEEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 22 ~~~~~~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
++..-.+++|.+.....+...+.... .+-+.|+|++|+|||++|+.+++
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCCCchhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 44445569999987766655554222 23499999999999999998876
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.0032 Score=61.05 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=81.3
Q ss_pred ccCCCCcccchhhHHHHHHHHhccCCc--------CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 23 LIDEEEICGRVGERNALVSMLLCESSE--------QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 23 ~~~~~~~vgR~~~~~~l~~~L~~~~~~--------~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
...-.++.|-++..++|.+.+..+-.+ -....+ ++|+|++|+||||||+.++.. ... ..++++..+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPE 79 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHH
Confidence 344456788888888887754311100 011223 999999999999999988762 221 344444332
Q ss_pred CCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHh-cCCceEEEEEeCCCCCCcc-------C----chhhhHhhhcC--
Q 006588 95 TFDEFRIAKAMLEALTGSTSNLDALQSLLISIDES-IAGKRFLLVLDDVWDGDYI-------K----WEPFYHCLKKG-- 160 (639)
Q Consensus 95 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDd~~~~~~~-------~----~~~l~~~l~~~-- 160 (639)
-.+. . .......+..+.+. ....++++++|+++..... . ...+...+...
T Consensus 80 l~~~--------------~--~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 80 LLNM--------------Y--VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp TCSS--------------T--THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred HHhh--------------h--hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence 1110 0 00011111111111 1345789999999653110 0 11222222222
Q ss_pred CCCcEEEEEccchHHHhh-h----cccceEECCCCCHHHHHHHHHHHhh
Q 006588 161 LHGSKILITTRNESIASM-M----RSTDVISIKELAEEECWALFKQLAF 204 (639)
Q Consensus 161 ~~~~~ilvTsr~~~~~~~-~----~~~~~~~l~~l~~~ea~~l~~~~~~ 204 (639)
.....++.+|..++.... . .....+.+...+.++..+++.....
T Consensus 144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 144 RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 123345555665543221 1 2355788999999999999987653
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.28 E-value=0.0014 Score=67.07 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHHHHh----ccCC--------------------cCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 27 EEICGRVGERNALVSMLL----CESS--------------------EQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~----~~~~--------------------~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..++|.++..+.|..++. .... ........+.|+|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 458999999999888772 0000 0012345799999999999999998877
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.26 E-value=0.00079 Score=70.92 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..+||+++.+..+...+... +-|.|+|++|+|||+||+.+++.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 56899999999999888743 45999999999999999999873
No 245
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.24 E-value=0.0002 Score=63.75 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=49.4
Q ss_pred CceeEEecCCCCCCCcccccccccCCCcEEeccCCC-Ccc-cchhhhcC----CCccEEecCCCCCccc-cchhhhhccc
Q 006588 442 TSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQK-IEK-LPEALCEL----YNLEKLDICSCSCLKE-LPEGIGKLIN 514 (639)
Q Consensus 442 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~-l~~-lp~~i~~l----~~L~~L~l~~~~~~~~-lp~~~~~l~~ 514 (639)
..|+.||+++|.+...--..+.++++|+.|+|++|. +++ --..++.+ ++|+.|+|++|..++. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777544444555667777777777774 552 22344443 3577777777753322 1123556677
Q ss_pred CceeecCCCC
Q 006588 515 MKYLLNRDTD 524 (639)
Q Consensus 515 L~~L~l~~n~ 524 (639)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777775
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.24 E-value=0.0017 Score=63.07 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=55.7
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhc--CCceEEEEeCCCCchHHHHHHHHHHccCCCCC-----cccHHHH-HHHHH
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQ--FDKILWVCVSETFDEFRIAKAMLEALTGSTSN-----LDALQSL-LISID 127 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~-~~~l~ 127 (639)
++.|+|++|+||||||.+++.. ...+ -..++|++........ .++.++...++ ..+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7999999999999999988874 3333 3568999988777653 36667654321 1344444 33332
Q ss_pred Hh---cCCceEEEEEeCCCCC
Q 006588 128 ES---IAGKRFLLVLDDVWDG 145 (639)
Q Consensus 128 ~~---l~~~~~LlvlDd~~~~ 145 (639)
.. -..++-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 2456889999998654
No 247
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.21 E-value=0.00015 Score=70.88 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=45.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEe--CCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCV--SETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 130 (639)
..+++.|+|++|+|||+||.+++.. .-..++|++. .+..+. .. .+.+...+.+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~~------~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------YN------TDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------CB------CCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------hh------cCHHHHHHHHHHHH
Confidence 3467899999999999999999773 2235678877 222110 00 23444444455444
Q ss_pred CCceEEEEEeCCCCC
Q 006588 131 AGKRFLLVLDDVWDG 145 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~ 145 (639)
...+ +||+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 4445 9999999653
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.21 E-value=0.0003 Score=65.61 Aligned_cols=113 Identities=16% Similarity=-0.006 Sum_probs=64.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC--cccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN--LDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l 130 (639)
...+++++|++|+||||++..+++. ...+-..++.+...... . ....++..++..... ....++..+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4579999999999999999888874 33333345555433221 1 112344444432211 123344555555544
Q ss_pred CCc-eEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 131 AGK-RFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 131 ~~~-~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.+. .-+||+|.+........+ +...+.+. +..|++|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve-~l~~L~~~--gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICE-VANILAEN--GFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHH-HHHHHHHT--TCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHH-HHHHHHhC--CCeEEEEeccc
Confidence 444 459999999765322222 33333332 67899999854
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.00062 Score=64.84 Aligned_cols=104 Identities=19% Similarity=0.132 Sum_probs=58.2
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh----cCCceEEEEeCCCCchHHHHHHHHHHccCC
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR----QFDKILWVCVSETFDEFRIAKAMLEALTGS 112 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~ 112 (639)
..|.++|...- +...++.|.|++|+|||||++.++....... .-..++|++.........+ ..+++.++..
T Consensus 11 ~~LD~~l~ggi----~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~ 85 (243)
T 1n0w_A 11 KELDKLLQGGI----ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLS 85 (243)
T ss_dssp HHHHHHTTTSE----ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred hHHHHhhcCCC----cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCC
Confidence 34555553222 2457999999999999999988876311111 2357899988765444433 2344444322
Q ss_pred CC---------CcccHHH---HHHHHHHhcC-CceEEEEEeCCCCC
Q 006588 113 TS---------NLDALQS---LLISIDESIA-GKRFLLVLDDVWDG 145 (639)
Q Consensus 113 ~~---------~~~~~~~---~~~~l~~~l~-~~~~LlvlDd~~~~ 145 (639)
.. ...+..+ ....+...+. .++-+||+|++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 86 GSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 10 0111222 2223333333 46789999998643
No 250
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.10 E-value=0.00092 Score=63.11 Aligned_cols=116 Identities=18% Similarity=0.086 Sum_probs=62.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC------------------
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS------------------ 114 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------------ 114 (639)
...+++|.|++|+|||||++.++.. ....-..++|+..... ..++...+ ..++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEES--RDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSSC--HHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcccC--HHHHHHHH-HHhcchHHHHhhCCEEEEeccccccC
Confidence 3468999999999999999999863 2222346777776542 33333322 23322110
Q ss_pred -----CcccHHHHHHHHHHhc---CCceEEEEEeCCCCC---CccCchhhhHhhhcC--CCCcEEEEEccch
Q 006588 115 -----NLDALQSLLISIDESI---AGKRFLLVLDDVWDG---DYIKWEPFYHCLKKG--LHGSKILITTRNE 173 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l---~~~~~LlvlDd~~~~---~~~~~~~l~~~l~~~--~~~~~ilvTsr~~ 173 (639)
...+.++....+...+ +-++.++|+|..... +......+...+... ..++.||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0113344444444333 222349999998643 222233344443322 2467788888764
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.07 E-value=0.0012 Score=66.08 Aligned_cols=99 Identities=22% Similarity=0.134 Sum_probs=62.2
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
...|..+|. ..- +...++.|.|++|+||||||..++.. ....-..++|++........ .++.++....
T Consensus 46 ~~~LD~~Lg~GGi----~~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~ 114 (356)
T 3hr8_A 46 SLAIDIATGVGGY----PRGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLK 114 (356)
T ss_dssp CHHHHHHTSSSSE----ETTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGG
T ss_pred CHHHHHHhccCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchh
Confidence 356666675 222 25689999999999999999999874 33333468899887666543 4455543321
Q ss_pred -----CcccHHHHHHHHHHhcC-CceEEEEEeCCCCC
Q 006588 115 -----NLDALQSLLISIDESIA-GKRFLLVLDDVWDG 145 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~ 145 (639)
...+.++....+....+ .+.-++|+|.+...
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 115 SLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTC
T ss_pred hhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhh
Confidence 12345555555554433 44568899988543
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.87 E-value=0.0028 Score=63.96 Aligned_cols=100 Identities=21% Similarity=0.108 Sum_probs=62.7
Q ss_pred hHHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCC
Q 006588 35 ERNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGST 113 (639)
Q Consensus 35 ~~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 113 (639)
-+..|..+|. ..- +...++.|+|++|+|||+||..++.. ....-..++|++........ .+..++...
T Consensus 58 G~~~LD~~Lg~GGl----~~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~ 126 (366)
T 1xp8_A 58 GSLSLDLALGVGGI----PRGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNT 126 (366)
T ss_dssp SCHHHHHHTSSSSE----ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCG
T ss_pred CCHHHHHHhCCCCc----cCCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCH
Confidence 3455666664 121 24568999999999999999998874 33333579999998765543 244444321
Q ss_pred C-----CcccHHHHHHHHHHhcC-CceEEEEEeCCCCC
Q 006588 114 S-----NLDALQSLLISIDESIA-GKRFLLVLDDVWDG 145 (639)
Q Consensus 114 ~-----~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~ 145 (639)
. ...+.++..+.+....+ ...-+||+|.+...
T Consensus 127 ~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 127 DELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp GGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTC
T ss_pred HHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHh
Confidence 1 11345555555555544 34569999998654
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.77 E-value=0.0046 Score=62.08 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=45.2
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHH----hcCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVK----RQFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
..|..+|...- +...++.|+|++|+|||+||..++...... +.-..++|++....++...+. .++..++
T Consensus 109 ~~LD~~LgGGl----~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 109 QEFDKLLGGGI----ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp HHHHHHTTSSB----CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred hhHHHHhcCCC----CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 44566664222 256899999999999999999887632111 123578999988876655543 3444443
No 254
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.74 E-value=0.0023 Score=65.80 Aligned_cols=127 Identities=10% Similarity=0.004 Sum_probs=75.0
Q ss_pred ccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccc-hhhhhcccCceeecCCCCccccccccCCCCcCCc
Q 006588 462 IKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELP-EGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLR 540 (639)
Q Consensus 462 ~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 540 (639)
+.++..|+.+.+..+...--...+.....++.+....+. +| ..+..+.+|+.+.+.++ +...-...|..+.+|+
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 344455555555444333222344555566666554432 22 23567788888888765 3333334577888888
Q ss_pred cccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEec
Q 006588 541 TLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFD 606 (639)
Q Consensus 541 ~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 606 (639)
.+.+ .++ +...-...|.++.+|+.+.+..+ ...+. ...+.+|.+|+.++|..+
T Consensus 324 ~i~l----p~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~------~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 324 SIDL----PYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIG------ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECC----CTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC------TTTBTTCTTCCEEEEEGG
T ss_pred EEEe----CCc-ccEEhHHhccCCCCCCEEEECcc--ccEeh------HHHhhCCCCCCEEEECCC
Confidence 8873 222 23333567888999999887543 11222 235889999999999754
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.70 E-value=0.0037 Score=62.80 Aligned_cols=99 Identities=21% Similarity=0.111 Sum_probs=61.9
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
...|..+|. ..- +..+++.|+|++|+||||||..++.. ....-..++|++........ .++.++....
T Consensus 46 ~~~LD~~Lg~GGl----~~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~ 114 (349)
T 2zr9_A 46 SISLDVALGIGGL----PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTD 114 (349)
T ss_dssp CHHHHHHTSSSSE----ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGG
T ss_pred CHHHHHHhccCCc----cCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHH
Confidence 445666665 222 24578999999999999999998874 33333578999987765542 2445543321
Q ss_pred -----CcccHHHHHHHHHHhcC-CceEEEEEeCCCCC
Q 006588 115 -----NLDALQSLLISIDESIA-GKRFLLVLDDVWDG 145 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~~~ 145 (639)
...+.++....+..... .++-+||+|.+...
T Consensus 115 ~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 115 SLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp GCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGC
T ss_pred HeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhh
Confidence 11234555555544443 34669999998543
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.70 E-value=0.0034 Score=62.58 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=44.4
Q ss_pred HHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh----cCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 37 NALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR----QFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 37 ~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
..|..+|...- +...++.|+|++|+|||+||..++....... .-..++|++....++...+. ++++.++
T Consensus 94 ~~LD~~L~GGl----~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g 166 (324)
T 2z43_A 94 QALDGLLAGGI----ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALG 166 (324)
T ss_dssp HHHHHHTTTSE----ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred hhHHHhcCCCC----CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhC
Confidence 44555553221 2456999999999999999988876321111 12478999988876655544 3455554
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.66 E-value=0.0034 Score=62.56 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHh---------cC-----CceEEEEeCCCCchHHH
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKR---------QF-----DKILWVCVSETFDEFRI 101 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~ 101 (639)
...|..+|...- +...++.|+|++|+|||+||..++....... .. ..++|++....++..++
T Consensus 84 ~~~LD~~l~GGl----~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l 159 (322)
T 2i1q_A 84 SSELDSVLGGGL----ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERI 159 (322)
T ss_dssp CHHHHHHTTSSE----ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHH
T ss_pred ChhHHHhcCCCc----cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHH
Confidence 345666664222 2567999999999999999988876321111 11 47899998887666555
Q ss_pred HHHHHHHcc
Q 006588 102 AKAMLEALT 110 (639)
Q Consensus 102 ~~~il~~l~ 110 (639)
. +++..++
T Consensus 160 ~-~~~~~~g 167 (322)
T 2i1q_A 160 M-QMAEHAG 167 (322)
T ss_dssp H-HHHHHHT
T ss_pred H-HHHHHcC
Confidence 4 3445554
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.56 E-value=0.0042 Score=62.44 Aligned_cols=98 Identities=21% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
...|..+|. ..- +..+++.|.|++|+||||||..++.. ....-..++|++.....+.. .+..++....
T Consensus 48 ~~~LD~~Lg~GGl----~~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~ 116 (356)
T 1u94_A 48 SLSLDIALGAGGL----PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDID 116 (356)
T ss_dssp CHHHHHHTSSSSE----ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGG
T ss_pred CHHHHHHhccCCc----cCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHH-----HHHHcCCChh
Confidence 445556664 221 24579999999999999999998874 33333578999987766543 2444543221
Q ss_pred C-----cccHHHHHHHHHHhc-CCceEEEEEeCCCC
Q 006588 115 N-----LDALQSLLISIDESI-AGKRFLLVLDDVWD 144 (639)
Q Consensus 115 ~-----~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~ 144 (639)
+ ..+.++..+.+.... ..+.-+||+|.+..
T Consensus 117 ~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 117 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGG
T ss_pred heeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHH
Confidence 1 123444444443332 23455899998754
No 259
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0056 Score=58.18 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
...++.|.|++|+||||||..++.. ....-..++|++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 4568999999999999999888763 2233357888886653
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.51 E-value=0.0093 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.++|.|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888764
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.50 E-value=0.0036 Score=62.96 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=56.6
Q ss_pred HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC----CceEEEEeCCCCchHHHHHHHHHHccCCC
Q 006588 38 ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF----DKILWVCVSETFDEFRIAKAMLEALTGST 113 (639)
Q Consensus 38 ~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~il~~l~~~~ 113 (639)
.|..+|... =+...++.|.|++|+|||||+..++......... ..++|++....+... -...+++.+....
T Consensus 119 ~LD~lL~gg----i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~-~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 119 SLDKLLGGG----IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIREIAQNRGLDP 193 (349)
T ss_dssp HHHHHHTSS----EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH-HHHHHHHTTTCCH
T ss_pred HHHHHhcCC----CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH-HHHHHHHHcCCCH
Confidence 455555422 2366899999999999999999887632111111 245899876654322 2333444332211
Q ss_pred ------------CCcccHHHHHHHHHHhcC------CceEEEEEeCCCC
Q 006588 114 ------------SNLDALQSLLISIDESIA------GKRFLLVLDDVWD 144 (639)
Q Consensus 114 ------------~~~~~~~~~~~~l~~~l~------~~~~LlvlDd~~~ 144 (639)
.......+....+...+. .++-+||+|.+..
T Consensus 194 ~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 194 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 001112233333444433 4678999999854
No 262
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.46 E-value=0.013 Score=60.14 Aligned_cols=124 Identities=11% Similarity=0.076 Sum_probs=73.4
Q ss_pred hhhcCCCccEEecCCCCCccccchhhhhcccCceeecCCCCcccccc-ccCCCCcCCccccceEecCCCccCCCccCCcc
Q 006588 484 ALCELYNLEKLDICSCSCLKELPEGIGKLINMKYLLNRDTDSVRYMP-VGIARLKSLRTLEEVRVSGRGCLDGRKACRLE 562 (639)
Q Consensus 484 ~i~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~ 562 (639)
.+.....|+.+.+..+- ...-...+.++++|+.+.+..+ +..++ ..|..+.+|+.+.+ ..+ +...-...|.
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~l----p~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDI----PEG-ITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEC----CTT-CCEECTTTTT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEe----CCc-ccEehHhHhh
Confidence 45567778888886543 2222334677888888888654 23444 45777888888763 222 2223345788
Q ss_pred cccCCCcCCceeeeCcCCCCChhhhcccccccccCcceEEEEeccCCcCCCCCCCcccHHHHhhcCCCCCCCccee
Q 006588 563 SLKNLEHLQICGIRGLGDVSDVGEAKRLELDKKKYLFSLTLKFDEKEKRGGERRKNEDDQLLLEALRPPPYLKELA 638 (639)
Q Consensus 563 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 638 (639)
++.+|+.+.+-.+ ...+ ....+.+|.+|+.+++..+. ..++......+|+++.
T Consensus 332 ~C~~L~~i~ip~s--v~~I------~~~aF~~C~~L~~i~~~~~~---------------~~~~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 332 GCEQLERIAIPSS--VTKI------PESAFSNCTALNNIEYSGSR---------------SQWNAISTDSGLQNLP 384 (394)
T ss_dssp TCTTCCEEEECTT--CCBC------CGGGGTTCTTCCEEEESSCH---------------HHHHTCBCCCCC----
T ss_pred CCCCCCEEEECcc--cCEE------hHhHhhCCCCCCEEEECCce---------------eehhhhhccCCCCEEE
Confidence 8889998877432 1112 22358899999999987543 1234555566666654
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.40 E-value=0.0063 Score=59.77 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCC-ceEEEEeC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFD-KILWVCVS 93 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~ 93 (639)
...+++|.|++|+|||||++.++.. ....-. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc
Confidence 4579999999999999999988774 222222 57777654
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.35 E-value=0.0053 Score=56.45 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|++.++.|.+.+.... .+...+++|.|++|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36677888888877542 23568999999999999999998876
No 265
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.21 E-value=0.0043 Score=65.21 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcCh
Q 006588 55 HIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+.+.|.|++|+|||+++..++..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999988874
No 266
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.0014 Score=59.38 Aligned_cols=105 Identities=11% Similarity=0.019 Sum_probs=52.2
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC--CchHHHHHHHHHHccCCCC--CcccHHHHHHHHHHhc
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET--FDEFRIAKAMLEALTGSTS--NLDALQSLLISIDESI 130 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 130 (639)
.+++++|+.|+||||++..++......+ ..++++..... .... .+...++.... ...+. ..+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d~r~~~~----~i~s~~g~~~~~~~~~~~----~~~~~~~ 73 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKIDSRYHST----MIVSHSGNGVEAHVIERP----EEMRKYI 73 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-----CCC----EECC----CEECEEESSG----GGGGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeeccccccCcc----cEEecCCCceeeEEECCH----HHHHHHh
Confidence 5789999999999999977766432222 23444432211 0000 00000110000 00111 1122233
Q ss_pred CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccc
Q 006588 131 AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRN 172 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~ 172 (639)
.++.-+|++|++...+. ++..++..+.+. +..|++|.+.
T Consensus 74 ~~~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~ 112 (184)
T 2orw_A 74 EEDTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLD 112 (184)
T ss_dssp CTTEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEES
T ss_pred cCCCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeec
Confidence 34567999999977532 344444433333 6778988874
No 267
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.04 E-value=0.034 Score=54.99 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=44.2
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
-+..|.+++.... ...++.|.|.+|+||||+|..++.+.... -..++|++.. .+..++...++..
T Consensus 54 G~~~LD~~lgGl~-----~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 54 GFTELDRMTYGYK-----RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp SCHHHHHHHSSBC-----TTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESS--SCHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECC--CCHHHHHHHHHHH
Confidence 3445555553222 45799999999999999999988743222 2678898877 3456666666654
No 268
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.04 E-value=0.019 Score=57.03 Aligned_cols=71 Identities=14% Similarity=-0.029 Sum_probs=47.3
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHc
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEAL 109 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 109 (639)
.|-..-+..|.+++.... ...++.|.|.+|+||||+|..++.+... +-..++|++... +..++...++...
T Consensus 27 ~gi~TG~~~LD~~~gGl~-----~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm--s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFN-----KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM--SAEQLALRALSDL 97 (338)
T ss_dssp CSBCCSCHHHHHHHCSBC-----TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcccCCChHHHHHhcCCC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC--CHHHHHHHHHHHh
Confidence 333344556666664333 4579999999999999999999875322 335688888764 4556666665543
No 269
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.03 E-value=0.029 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999988865
No 270
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.98 E-value=0.0073 Score=58.75 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=61.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHh---------cCCceEEEEeCCCCchH-HHHH------------HHHHHcc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKR---------QFDKILWVCVSETFDEF-RIAK------------AMLEALT 110 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~---------~f~~~~wv~~~~~~~~~-~~~~------------~il~~l~ 110 (639)
...++.|.|++|+|||||+..++.... .+ .-..++|++........ .-.. .+++.+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCceE
Confidence 346899999999999999998876322 11 02357788776543211 1111 1123332
Q ss_pred CCCC-----CcccHHHHHHHHHHhcCCceEEEEEeCCCC--C-CccCc---hhhhHhhhcC--CCCcEEEEEccch
Q 006588 111 GSTS-----NLDALQSLLISIDESIAGKRFLLVLDDVWD--G-DYIKW---EPFYHCLKKG--LHGSKILITTRNE 173 (639)
Q Consensus 111 ~~~~-----~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~--~-~~~~~---~~l~~~l~~~--~~~~~ilvTsr~~ 173 (639)
.... ..-+..+ ...+.....+ +-+||||.+.. . +.... ..+...+... ..++.||+++...
T Consensus 108 l~~~~~~~~~~ls~g~-~~~i~~l~~~-~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 108 IQPLIGSLPNIMAPEW-FDGLKRAAEG-RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp ECCCTTSCCCTTSHHH-HHHHHHHHTT-CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred EeecCCCCcccCCHHH-HHHHHHhcCC-CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 2110 0011122 3334444443 56899999865 2 21111 3344444332 2477788888754
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.98 E-value=0.017 Score=56.57 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHhccCC--cCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHc
Q 006588 33 VGERNALVSMLLCESS--EQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEAL 109 (639)
Q Consensus 33 ~~~~~~l~~~L~~~~~--~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l 109 (639)
....+.|.+.+..... ...+..++++|.|++|+||||++..++.. ....-..+.+++..... ...+.+..+++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 3445556666643221 01245689999999999999999999874 33333456666665332 1222333444444
Q ss_pred cCCC----CCcccHHHHHHHHHHhcCCceEEEEEeCCCC
Q 006588 110 TGST----SNLDALQSLLISIDESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 110 ~~~~----~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~ 144 (639)
+... ..........+.+...+...+=++|+|-...
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 3211 1112222222334443344445788897643
No 272
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.96 E-value=0.0099 Score=60.68 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhH----HhcCCceEEEEeCCCCchHHHHHHHHHHcc
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEV----KRQFDKILWVCVSETFDEFRIAKAMLEALT 110 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 110 (639)
+..|.++|...- +...++.|.|++|+|||||+..++..... .+.-..++|++....+....+ ..+++.++
T Consensus 164 ~~~LD~lLgGGI----~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 164 SKNLDTLLGGGV----ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp CHHHHHHTTTSE----ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred ChhHHHHhcCCc----CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 344555563322 24579999999999999999866431111 113356899988765544433 33555554
No 273
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.94 E-value=0.017 Score=59.21 Aligned_cols=145 Identities=10% Similarity=0.024 Sum_probs=92.8
Q ss_pred HHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccchhhhcCCCccEEecCCCCCccccc-hhhhhcccC
Q 006588 437 LFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPEALCELYNLEKLDICSCSCLKELP-EGIGKLINM 515 (639)
Q Consensus 437 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 515 (639)
.+..+..|+.+.+..+. .......|..+..++.+......+.. ..+....+|+.+.+..+ +..++ ..+.++++|
T Consensus 248 ~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSL 322 (394)
T ss_dssp TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTC
T ss_pred cccccccceeEEcCCCc-ceeeccccccccccceeccCceeecc--ccccccccccccccccc--cceechhhhcCCCCC
Confidence 36677788888887665 33344567777888887776654332 24567788888888654 33443 447788899
Q ss_pred ceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCceeeeCcCCCCChhhhcccccccc
Q 006588 516 KYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQICGIRGLGDVSDVGEAKRLELDKK 595 (639)
Q Consensus 516 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~~ 595 (639)
+.+++..+ +...-..+|..+.+|+.+.+ ..+ +...-...|.++++|+.+.+..+- .. ....+.+|
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~l----p~~-l~~I~~~aF~~C~~L~~i~lp~~~-----~~----~~~~F~~c 387 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINF----PLS-LRKIGANAFQGCINLKKVELPKRL-----EQ----YRYDFEDT 387 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECC----CTT-CCEECTTTBTTCTTCCEEEEEGGG-----GG----GGGGBCTT
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEE----Ccc-ccEehHHHhhCCCCCCEEEECCCC-----EE----hhheecCC
Confidence 99988765 33333456788888888763 222 233335578889999998875432 11 12247778
Q ss_pred cCcceE
Q 006588 596 KYLFSL 601 (639)
Q Consensus 596 ~~L~~L 601 (639)
.+|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 887764
No 274
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.92 E-value=0.018 Score=56.70 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.2
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+|....+..+...+..... .+.+.+++|.|++|+||||+++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555556666666554433 45677999999999999999988765
No 275
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.83 E-value=0.0056 Score=62.12 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHHhccC---------CcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 28 EICGRVGERNALVSMLLCES---------SEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~---------~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.++|.+...+.+...+.... .......+.+.|+|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999988883100 000124567999999999999999998773
No 276
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.82 E-value=0.024 Score=53.04 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhH---Hh-cCCceEEEEeCCCCc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEV---KR-QFDKILWVCVSETFD 97 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~---~~-~f~~~~wv~~~~~~~ 97 (639)
...+++|.|++|+|||||++.++..... .. ....++|++......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 5679999999999999999988652111 11 234588887665433
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.81 E-value=0.019 Score=56.06 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC-CchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET-FDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..++++|.|++|+||||++..++..... .+-..+..++.... ....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4579999999999999999998874221 12235666766542 233344444444443322111222333333333 3
Q ss_pred CceEEEEEeCC
Q 006588 132 GKRFLLVLDDV 142 (639)
Q Consensus 132 ~~~~LlvlDd~ 142 (639)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 34457889944
No 278
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.80 E-value=0.011 Score=59.03 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-C-ceEEEEeCCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-D-KILWVCVSET 95 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~ 95 (639)
....++|.|++|+|||||++.+++. +..+. + .++++-+++.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCC
Confidence 3568999999999999999988773 33222 2 3445655544
No 279
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.68 E-value=0.016 Score=70.16 Aligned_cols=96 Identities=21% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC-
Q 006588 37 NALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS- 114 (639)
Q Consensus 37 ~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~- 114 (639)
..|..+|. .. -+..+.|.|+|++|+|||+||.+++. +...+=..+.|+++........ ++.++....
T Consensus 1413 ~~LD~lLG~GG----i~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~ 1481 (2050)
T 3cmu_A 1413 LSLDIALGAGG----LPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDN 1481 (2050)
T ss_dssp HHHHHHHSSSS----EETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTT
T ss_pred HHHHHhcCCCC----ccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchh
Confidence 34666665 22 22567999999999999999999987 3444445788998887765555 444442211
Q ss_pred ----CcccHHHHHHHHHHhcC-CceEEEEEeCCC
Q 006588 115 ----NLDALQSLLISIDESIA-GKRFLLVLDDVW 143 (639)
Q Consensus 115 ----~~~~~~~~~~~l~~~l~-~~~~LlvlDd~~ 143 (639)
...+.++....+....+ .++-+||+|.+.
T Consensus 1482 l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1482 LLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp CEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ceeecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 12234455554544432 467799999984
No 280
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.67 E-value=0.0076 Score=55.71 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 34 GERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 34 ~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+.+++|.+.+... .+...+|+|.|++|+|||||++.+...
T Consensus 6 ~~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 6 ALCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455565655432 135689999999999999999988763
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.63 E-value=0.018 Score=54.68 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999988855
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.61 E-value=0.0052 Score=55.11 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+|+.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998866
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.59 E-value=0.0061 Score=55.26 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=31.8
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
|.-..-+..|..++.... ....+.|+|++|+|||++|..+++.
T Consensus 39 ~~~~~f~~~l~~~~~~iP-----kkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 39 IEFITFLGALKSFLKGTP-----KKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CCHHHHHHHHHHHHHTCT-----TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCC-----cccEEEEECCCCCCHHHHHHHHHHH
Confidence 444455777777776322 3457999999999999999888773
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.57 E-value=0.074 Score=54.62 Aligned_cols=39 Identities=28% Similarity=0.304 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVS 93 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 93 (639)
.+.+|.+.|++|+||||++..++... ..+-..++-+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l--~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF--QKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH--HHCCCeEEEEeCC
Confidence 47899999999999999999888743 3332345555554
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.56 E-value=0.01 Score=57.91 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.....+++|.|++|+||||+|+.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999998865
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.46 E-value=0.0072 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+|||||++.++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998876
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.40 E-value=0.07 Score=52.80 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC-CCchHHHHHHHHHHcc
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE-TFDEFRIAKAMLEALT 110 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~ 110 (639)
+...+++|.|+.|+||||+++.++.. ....-..+.+..... .....+.+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~--l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW--LKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 45789999999999999999998874 332223455554432 2234444555555554
No 288
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.38 E-value=0.043 Score=56.57 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=33.2
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcC-CceEEEEeCCCC-chHHHHHHHH
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQF-DKILWVCVSETF-DEFRIAKAML 106 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~il 106 (639)
+.++|+|++|+|||||+..++.. ...++ ...+++.+.+.. +..+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 45899999999999999999874 33333 445566665544 3335555454
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.38 E-value=0.015 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.....|+|.|++|+||||+++.++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998874
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.35 E-value=0.008 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+.+|+|.|++|+||||+|+.++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 36899999999999999998865
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.35 E-value=0.055 Score=55.60 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=49.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHHccCCC----CCcccHHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEALTGST----SNLDALQSLLISID 127 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~l~~~~----~~~~~~~~~~~~l~ 127 (639)
..+++++.|++|+||||++..++... ..+-..+..+++.... ...+.+.......+.+. ....+..-....+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 47899999999999999999998743 3333456666665332 23334444444443321 11122222223333
Q ss_pred HhcCCceEEEEEeCCCC
Q 006588 128 ESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 128 ~~l~~~~~LlvlDd~~~ 144 (639)
.......=++|+|-...
T Consensus 174 ~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HTTTTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33323334667886643
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.27 E-value=0.0075 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+|+.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998866
No 293
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.24 E-value=0.0085 Score=53.39 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=18.5
Q ss_pred EEEEEEcCCCChHHHHHHHh
Q 006588 55 HIISIVGMGGIGKTTLAQLA 74 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~ 74 (639)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999987
No 294
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.23 E-value=0.16 Score=63.92 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=79.4
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCc
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGK 133 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 133 (639)
.+-|.++|++|+|||++|+.+... . .. ...+.++++...+...+...+-..+.......... ..-.-.++
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~--~-~~-~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk 1336 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRN--S-SL-YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIK 1336 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHS--C-SS-CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhc--C-CC-CceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCc
Confidence 357999999999999999766542 1 11 24556777777777666666655543211000000 00001467
Q ss_pred eEEEEEeCCCCCCccC------chhhhHhhhcCC------------CCcEEEEEccchH------HH-hhhcccceEECC
Q 006588 134 RFLLVLDDVWDGDYIK------WEPFYHCLKKGL------------HGSKILITTRNES------IA-SMMRSTDVISIK 188 (639)
Q Consensus 134 ~~LlvlDd~~~~~~~~------~~~l~~~l~~~~------------~~~~ilvTsr~~~------~~-~~~~~~~~~~l~ 188 (639)
++++++||++-+.... .+.++..+...+ .+..+|.++.... +. ........+.+.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 8999999975543332 233333332211 1234555554331 11 122345689999
Q ss_pred CCCHHHHHHHHHHHh
Q 006588 189 ELAEEECWALFKQLA 203 (639)
Q Consensus 189 ~l~~~ea~~l~~~~~ 203 (639)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 295
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.20 E-value=0.055 Score=56.35 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
+..|.+++.... ...++.|.|.+|+|||++|..++.+... ..-..++|++... +..++...++..
T Consensus 187 ~~~LD~~lgGl~-----~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 187 FKELDQLIGTLG-----PGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp CHHHHHHHCCCC-----TTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CHhhhhhcCCcC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC--CHHHHHHHHHHH
Confidence 344555563222 4579999999999999999999885322 1224688888864 345666665543
No 296
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.18 E-value=0.056 Score=57.34 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=37.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhc-CCceEEEEeCCCCchHHHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-FDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
...++.|.|.+|+|||+||..++.+ ...+ -..++|++.... ..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s~E~s--~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAMLEES--VEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEESSSC--HHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEeccCC--HHHHHHHHHHH
Confidence 4568999999999999999998874 3222 346888888654 45666655543
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.16 E-value=0.015 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHhcCh
Q 006588 55 HIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..|+|.|++|+||||+|+.+++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998773
No 298
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.15 E-value=0.052 Score=55.20 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=76.8
Q ss_pred ccccCCCCccEEEeeccccCCCCchhhhHHHHHhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-h
Q 006588 406 ISTCRTKRIRSLLIECRRFDHSSLNGEILEELFRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-A 484 (639)
Q Consensus 406 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~ 484 (639)
..+..+.+|..+.+..+- ..+....+..+..|+.+.+..+- ...-...|.++.+|+.+.+..+ ++.++. .
T Consensus 211 ~~f~~~~~l~~i~~~~~~-------~~i~~~~f~~~~~L~~i~lp~~v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGV-------TTLGDGAFYGMKALDEIAIPKNV-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp TTTTTCSSCSEEECCTTC-------CEECTTTTTTCSSCCEEEECTTC-CEECTTTTTTCTTCCEEEECCC-CSEECTTT
T ss_pred cccccccccceeeeccce-------eEEccccccCCccceEEEcCCCc-cEeCccccceeehhcccccccc-ceeccccc
Confidence 445566677776554331 12233336667778887776652 3333455666777887777543 554443 5
Q ss_pred hhcCCCccEEecCCCCCccccc-hhhhhcccCceeecCCCCccccccccCCCCcCCcccc
Q 006588 485 LCELYNLEKLDICSCSCLKELP-EGIGKLINMKYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 485 i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
+..+.+|+.+.+..+. +..++ ..+.++++|+.+.+..+ +...-..+|..+.+|+.+.
T Consensus 282 F~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred cccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 6677788888887665 33343 45677788888888654 2222234577777787776
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.13 E-value=0.012 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+|+|.|++|+||||+++.++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998773
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.0093 Score=53.65 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.++++|.|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998866
No 301
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.12 E-value=0.016 Score=55.03 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=29.7
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+..+.+.++.+...... .....|+|.|++|+||||+|+.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 10 STIDLLNELKRRYACLS----KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CHHHHHHHHHHHHHHHT----SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcc----CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44445555555544332 2567899999999999999998865
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.10 E-value=0.0096 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..++++|.|++|+|||||++.++.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999998865
No 303
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.10 E-value=0.0094 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.|+|.|++|+||||+++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.09 E-value=0.02 Score=55.71 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.+...+|+|.|++|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988774
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.08 E-value=0.012 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998866
No 306
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.02 E-value=0.0092 Score=59.96 Aligned_cols=111 Identities=9% Similarity=0.081 Sum_probs=58.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHH-HHHHHHHHccCCCCCcccHHHHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFR-IAKAMLEALTGSTSNLDALQSLLISIDESIA 131 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 131 (639)
..++++|.|+.|+|||||.+.+... ........+ +...+...... -...+..+... ..........+...+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~~~~~~~~v~q~~~----~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFVHESKKCLVNQREV----HRDTLGFSEALRSALR 194 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSCCCCSSSEEEEEEB----TTTBSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhhhhccccceeeeee----ccccCCHHHHHHHHhh
Confidence 3469999999999999999988773 332222222 22222211100 00000000000 0011123346667778
Q ss_pred CceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchHH
Q 006588 132 GKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNESI 175 (639)
Q Consensus 132 ~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~~ 175 (639)
..|=+|++|+..+. ..+..+.... ..|..+++|+.....
T Consensus 195 ~~PdvillDEp~d~--e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 EDPDIILVGEMRDL--ETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp SCCSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred hCcCEEecCCCCCH--HHHHHHHHHH---hcCCEEEEEEccChH
Confidence 88889999999642 2333333332 236678888886543
No 307
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.02 E-value=0.01 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.|+|.|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998876
No 308
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.01 E-value=0.098 Score=51.60 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=30.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
+..++++|.|++|+||||++..++.. ....-..+.++++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~--l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY--YAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCC
Confidence 46789999999999999999998874 333334566666654
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.99 E-value=0.0087 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998765
No 310
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.96 E-value=0.072 Score=55.62 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=35.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
...++.|.|.+|+||||||..++.+.... .-..++|++.... ..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC--HHHHHHHHH
Confidence 45699999999999999999998853221 2236888887643 345555544
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.92 E-value=0.0092 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
|.|+|.||+|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999997755
No 312
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.89 E-value=0.013 Score=52.21 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 457999999999999999996543
No 313
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.87 E-value=0.12 Score=53.59 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=42.1
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHH
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEA 108 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~ 108 (639)
+..|.+++.... ...++.|.|.+|+||||+|..++.+.... -..++|++.... ..++...++..
T Consensus 184 ~~~LD~~lgGl~-----~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~~~ 247 (444)
T 3bgw_A 184 FTELDRMTYGYK-----RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLIVT 247 (444)
T ss_dssp CHHHHHHHSSBC-----SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHHHH
T ss_pred cHHHHhhcCCCC-----CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHHHH
Confidence 344555553222 45799999999999999999998853322 346888877643 34455555443
No 314
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.012 Score=53.91 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=26.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
...+++|.|++|+||||+++.++.. . +.++++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~--~-----g~~~i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE--T-----GLEFAEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH--H-----CCEEEEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh--h-----CCeEEcccc
Confidence 4578999999999999999988662 2 455665443
No 315
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.84 E-value=0.082 Score=53.68 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=77.3
Q ss_pred HhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccc-hhhhhcccC
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELP-EGIGKLINM 515 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 515 (639)
+..+.+|+.+.+..+- .......+.++.+|+.+.+..+ ++.++. .+....+|+.+.+..+ +..++ ..+.++++|
T Consensus 213 f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccccc
Confidence 5566777777776543 3333455667777888877654 554433 4566777888877643 33343 346777888
Q ss_pred ceeecCCCCccccccccCCCCcCCccccceEecCCCccCCCccCCcccccCCCcCCce
Q 006588 516 KYLLNRDTDSVRYMPVGIARLKSLRTLEEVRVSGRGCLDGRKACRLESLKNLEHLQIC 573 (639)
Q Consensus 516 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 573 (639)
+.+.+.++.+...-...|..+.+|+.+.+ ..+ +...-..+|.++++|+.+.+-
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~l----p~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTL----PTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEEC----CTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEc----Ccc-ccEEHHHHhhCCCCCCEEEEC
Confidence 88888766433333345777777777762 222 222234567778888877763
No 316
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.83 E-value=0.021 Score=52.04 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=18.1
Q ss_pred EEEEEEcCCCChHHHHHHHhc
Q 006588 55 HIISIVGMGGIGKTTLAQLAC 75 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~ 75 (639)
-++.|+|.+|+|||++|....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 478899999999999997653
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.83 E-value=0.01 Score=54.48 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+|+|.|++|+||||+|+.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998876
No 318
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.78 E-value=0.013 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+++|.|++|+|||||++.++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999988765
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.78 E-value=0.017 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+||||+++.++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 320
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.78 E-value=0.13 Score=50.04 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc-hHHHHHHHHHHccCCC---CCcccHHHHHHHHHHh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD-EFRIAKAMLEALTGST---SNLDALQSLLISIDES 129 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~ 129 (639)
..++++.|++|+||||++..++.. ....-..+.+++...... ..+.+..+....+... ....+..+........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 679999999999999999988874 333334677777764432 3333444444443321 1112222232222222
Q ss_pred cC-CceEEEEEeCCCCC
Q 006588 130 IA-GKRFLLVLDDVWDG 145 (639)
Q Consensus 130 l~-~~~~LlvlDd~~~~ 145 (639)
++ ..-=++|+|-....
T Consensus 176 ~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHTTCSEEEEECCCSC
T ss_pred HHhCCCCEEEEeCCCCc
Confidence 22 22237888876443
No 321
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.77 E-value=0.021 Score=56.58 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=31.8
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
|+-++.++++.+.+..... ......++|.|++|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445555666666543222 234567999999999999999988773
No 322
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.75 E-value=0.2 Score=52.47 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHhccCCcC---CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 37 NALVSMLLCESSEQ---QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 37 ~~l~~~L~~~~~~~---~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
++|.+.+....... ....++|+|.|.+|+||||++..++... ..+-..+.-|++..
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l--~~~G~kVllVd~D~ 139 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYY--QRKGWKTCLICADT 139 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEECC
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEeccc
Confidence 44555665422110 1457899999999999999999998743 22223466666644
No 323
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.74 E-value=0.014 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.9
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
-+.+++|+|.|+||+||+|.|+.+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34779999999999999999998766
No 324
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.73 E-value=0.075 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...+|+|.|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998876
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.71 E-value=0.032 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...|+|.|++|+||||+|+.+++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998773
No 326
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.71 E-value=0.02 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...|+|.|++|+||||+|+.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 327
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.69 E-value=0.016 Score=53.58 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...+++|.|+.|+|||||++.+..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999988866
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.66 E-value=0.016 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
++++|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999998876
No 329
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.65 E-value=0.012 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
++++|.|++|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 330
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.64 E-value=0.015 Score=52.76 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..++++|.|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999998865
No 331
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.63 E-value=0.12 Score=52.27 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=82.6
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
..++|....+.++.+.+..... ....|.|+|++|+||+++|+.+.. ...+-...+-++|..-.. ..+..++.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~---~s~r~~~fv~vnc~~~~~-~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHR---YSGRKGAFVDLNCASIPQ-ELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHH---HHCCCSCEEEEESSSSCT-TTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHH---hccccCCcEEEEcccCCh-HHHHHHhc
Confidence 4689998888887777654432 334588999999999999987755 222222333445543221 11222221
Q ss_pred HHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccchHH
Q 006588 107 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRNESI 175 (639)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~~~~ 175 (639)
..-.+...+... .....+.. .+.. .|+||+++.........+...+.... ...++|.+|.....
T Consensus 201 g~~~g~~tga~~--~~~g~~~~--a~~g-tlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 201 GHEKGAFTGALT--RKKGKLEL--ADQG-TLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE 275 (368)
T ss_dssp EECSCSSSSCCC--CEECHHHH--TTTS-EEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred CccccccCCccc--ccCChHhh--cCCC-eEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 110111111000 00011111 1222 58999999886666677777775421 13567777664211
Q ss_pred H---h------hh--cccceEECCCCCH--HHHHHHH
Q 006588 176 A---S------MM--RSTDVISIKELAE--EECWALF 199 (639)
Q Consensus 176 ~---~------~~--~~~~~~~l~~l~~--~ea~~l~ 199 (639)
. . .. -..-.+.+++|.+ ++...|+
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~ 312 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLA 312 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHH
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHH
Confidence 1 0 00 0122577888866 5555444
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.63 E-value=0.016 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+++.++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999987765
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.61 E-value=0.014 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..|+|.|++|+||||+++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998877
No 334
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.59 E-value=0.013 Score=52.52 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.|+|.|++|+||||+++.+++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46799999999999999998876
No 335
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.59 E-value=0.013 Score=54.00 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..++++|.|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998866
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.59 E-value=0.045 Score=49.71 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.|+|.|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988773
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.58 E-value=0.019 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.....|+|.|++|+||||+|+.+++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988765
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.58 E-value=0.019 Score=52.87 Aligned_cols=24 Identities=42% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998766
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.57 E-value=0.016 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+||||+++.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998765
No 340
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.018 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.|++|+||||+|+.++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998765
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.55 E-value=0.02 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.|++|+||||+|+.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 342
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.54 E-value=0.068 Score=48.31 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=43.9
Q ss_pred HhhCCceeEEecCCCCCCC----cccccccccCCCcEEeccCCCCc-----ccchhhhcCCCccEEecCCCCC--cc---
Q 006588 438 FRELTSLRALDFPSLYLPS----EIPRNIKKLIHLRYLNLSGQKIE-----KLPEALCELYNLEKLDICSCSC--LK--- 503 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~--~~--- 503 (639)
+..-..|+.|+|++|.+.. .+...+..-..|+.|+|++|.|+ .+...+..-..|+.|+|++|.. .+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 4455566666676666432 12333444455666666666666 2233344444566666654321 11
Q ss_pred --ccchhhhhcccCceeecCCC
Q 006588 504 --ELPEGIGKLINMKYLLNRDT 523 (639)
Q Consensus 504 --~lp~~~~~l~~L~~L~l~~n 523 (639)
.+...+..-+.|+.|+++.|
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 12233344455666666554
No 343
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.53 E-value=0.028 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.....+++|.|++|+||||+|+.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44568999999999999999998765
No 344
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.52 E-value=0.052 Score=49.14 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998877
No 345
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.49 E-value=0.019 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+++|.|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999998853
No 346
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.48 E-value=0.033 Score=59.88 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHH-HhcC-
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISID-ESIA- 131 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~- 131 (639)
.+.++|.|++|+||||++..+.... ... ...+.+.+.+...... +.+.++.. ...+........ .+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l--~~~-g~~Vl~~ApT~~Aa~~----L~e~~~~~---a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA--ESL-GLEVGLCAPTGKAARR----LGEVTGRT---ASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSHHHHHH----HHHHHTSC---EEEHHHHTTEETTEESCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--Hhc-CCeEEEecCcHHHHHH----hHhhhccc---HHHHHHHHcCCcchhhhh
Confidence 4689999999999999999887742 222 2334454443322222 22222211 122221110000 0000
Q ss_pred ----CceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 132 ----GKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 132 ----~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
.+.-+||+|++...+...+..+...+ ..+.++|+..-
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEec
Confidence 12248999999765433344444433 35667777654
No 347
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.46 E-value=0.15 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.++|.|+.|+||||+...+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 36899999999999987765544
No 348
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.45 E-value=0.059 Score=65.34 Aligned_cols=102 Identities=20% Similarity=0.099 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccC
Q 006588 33 VGERNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTG 111 (639)
Q Consensus 33 ~~~~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~ 111 (639)
..-...|..+|. ..- +...++.|+|++|+||||||.+++.. ....-..++|++.....+.. .++.++.
T Consensus 365 ~TG~~~LD~lLG~GGl----~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~-----~a~~lGv 433 (2050)
T 3cmu_A 365 STGSLSLDIALGAGGL----PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGV 433 (2050)
T ss_dssp CCSCHHHHHHHSSSSE----ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHH-----HHHHTTC
T ss_pred eCCCHHHHHHhccCCc----cCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHH-----HHHHcCC
Confidence 334556677775 221 25679999999999999999999884 33333578999988766643 2555654
Q ss_pred CCC-----CcccHHHHHHHHHHhc-CCceEEEEEeCCCCC
Q 006588 112 STS-----NLDALQSLLISIDESI-AGKRFLLVLDDVWDG 145 (639)
Q Consensus 112 ~~~-----~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~ 145 (639)
... +..+.++..+.+.... ....-+||+|.+...
T Consensus 434 d~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 434 DIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp CTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHh
Confidence 321 1244556655555433 234569999998654
No 349
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.43 E-value=0.018 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+|+.+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998866
No 350
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.43 E-value=0.05 Score=55.70 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=46.2
Q ss_pred HhhCCceeEEecCCCCCCCcccccccccCCCcEEeccCCCCcccch-hhhcCCCccEEecCCCCCccccc-hhhhhcccC
Q 006588 438 FRELTSLRALDFPSLYLPSEIPRNIKKLIHLRYLNLSGQKIEKLPE-ALCELYNLEKLDICSCSCLKELP-EGIGKLINM 515 (639)
Q Consensus 438 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 515 (639)
|.++..|+.+.+..+. .......|.++.+|+.+.+. +.++.++. .|..+.+|+.+++..+ +..+. ..|.++++|
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCC
Confidence 4455555555554433 22222334455555555553 33443432 3445555555555432 22222 235555566
Q ss_pred ceeecCCCCccccccccCCCCcCCcccc
Q 006588 516 KYLLNRDTDSVRYMPVGIARLKSLRTLE 543 (639)
Q Consensus 516 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 543 (639)
+.+.+..+ ....-..+|..+.+|+.+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 66655443 1111223455555555554
No 351
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.42 E-value=0.18 Score=54.53 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.|+.|+|||||++.++.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999988865
No 352
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.39 E-value=0.039 Score=54.32 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
++.++|+|+|-|||||||.+-.++. .....-..|.=+++...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 3679999999999999999987766 33334446888888743
No 353
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.38 E-value=0.018 Score=57.33 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=33.9
Q ss_pred hHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcC-C-ceEEEEeCC
Q 006588 35 ERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQF-D-KILWVCVSE 94 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~ 94 (639)
-=-+..+.+.... ....++|.|++|+|||+|+..+++. ...+. + .++++-+.+
T Consensus 161 tGiraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDE 215 (427)
T ss_dssp HHHHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSC
T ss_pred ccchhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEecc
Confidence 3345556665543 3457899999999999999888874 32222 2 235555554
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.37 E-value=0.03 Score=49.38 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..++++|.|++|+|||||+.+++..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998873
No 355
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.36 E-value=0.14 Score=52.58 Aligned_cols=65 Identities=23% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHH
Q 006588 38 ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEA 108 (639)
Q Consensus 38 ~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~ 108 (639)
+..+.|.... ....++|.|.+|+|||+|+..++++. .+.+-+.++++-+.+.. ...+++.++...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4455555443 34678999999999999998887732 12223556777676544 555777777654
No 356
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.35 E-value=0.046 Score=54.32 Aligned_cols=104 Identities=14% Similarity=0.079 Sum_probs=52.5
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCCcccHHHHHHHHHHhcCCce
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSNLDALQSLLISIDESIAGKR 134 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 134 (639)
..++|.|+.|+|||||++.++.. .. ...+.+.+.-......... . +.+.....+.. .....+...+..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~~~-~---~~i~~~~ggg~---~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFKHH-K---NYTQLFFGGNI---TSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCSSC-S---SEEEEECBTTB---CHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccccc-h---hEEEEEeCCCh---hHHHHHHHHhhhCC
Confidence 57999999999999999988773 21 1245555543221110000 0 00000000111 12233445566677
Q ss_pred EEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 135 FLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 135 ~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
=++++|+.... +...++..+.. .+..+++|+...
T Consensus 242 ~ilildE~~~~---e~~~~l~~~~~--g~~tvi~t~H~~ 275 (330)
T 2pt7_A 242 DRIILGELRSS---EAYDFYNVLCS--GHKGTLTTLHAG 275 (330)
T ss_dssp SEEEECCCCST---HHHHHHHHHHT--TCCCEEEEEECS
T ss_pred CEEEEcCCChH---HHHHHHHHHhc--CCCEEEEEEccc
Confidence 78999998652 22223333332 122367777653
No 357
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.35 E-value=0.015 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+.++|.|++|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998865
No 358
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.34 E-value=0.031 Score=52.18 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=30.4
Q ss_pred cchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 31 GRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 31 gR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..++..+.+++.+.. .....|+|.|.+|+|||||+.+++..
T Consensus 21 ~~~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 21 ANKRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344556666666642 24678889999999999999998764
No 359
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.32 E-value=0.02 Score=62.38 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=36.5
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+||.+..++.+...+... ..++|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 45899999999999888743 4699999999999999998876
No 360
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.31 E-value=0.066 Score=45.00 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=28.2
Q ss_pred EEecCCCCCC-CcccccccccCCCcEEeccCCCCcccchh-hhcCCCccEEecCCCC
Q 006588 446 ALDFPSLYLP-SEIPRNIKKLIHLRYLNLSGQKIEKLPEA-LCELYNLEKLDICSCS 500 (639)
Q Consensus 446 ~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 500 (639)
.++.+++.+. ..+|..+. .+|+.|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555532 14554322 2466666666666666543 3455566666665554
No 361
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.31 E-value=0.094 Score=47.70 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=31.9
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHH
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLE 107 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 107 (639)
.|+|-|..|+||||.++.+++. ...+-..+++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 3789999999999999999884 3334334554444333334445555543
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.28 E-value=0.023 Score=51.97 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...+|+|.|++|+||||+++.++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988765
No 363
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.27 E-value=0.022 Score=54.61 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...|+|.|++|+||||+|+.++..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 364
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.27 E-value=0.095 Score=51.12 Aligned_cols=90 Identities=18% Similarity=0.109 Sum_probs=48.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchH-HHHHHHHHHccCCC---CCcccHHHHH-HHHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEF-RIAKAMLEALTGST---SNLDALQSLL-ISID 127 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~il~~l~~~~---~~~~~~~~~~-~~l~ 127 (639)
..++++|.|++|+||||++..++.. ....-..+.+++........ ..+..+.+..+... ....+..++. ..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH--HHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999874 33333456666665433222 22333444433221 0112222232 2233
Q ss_pred HhcCCceEEEEEeCCCC
Q 006588 128 ESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 128 ~~l~~~~~LlvlDd~~~ 144 (639)
.......=++|+|-.-.
T Consensus 175 ~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 175 KARLEARDLILVDTAGR 191 (295)
T ss_dssp HHHHHTCCEEEEECCCC
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 32223344788897633
No 365
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.26 E-value=0.022 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+|+.++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998866
No 366
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.26 E-value=0.11 Score=53.11 Aligned_cols=40 Identities=28% Similarity=0.246 Sum_probs=29.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
..+++++.|++|+||||++..++.. ....-..+..+++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY--YKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEeeccc
Confidence 4678999999999999999988874 333334566666643
No 367
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.25 E-value=0.06 Score=54.90 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=71.2
Q ss_pred CCcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 27 EEICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
..++|....++++.+.+..... ....|.|+|.+|+|||++|+.+... ........+-+++..-. ...+..++.
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~----~~~~vli~Ge~GtGK~~lAr~ih~~--s~r~~~~fv~v~~~~~~-~~~~~~elf 209 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC----AECPVLITGESGVGKEVVARLIHKL--SDRSKEPFVALNVASIP-RDIFEAELF 209 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT----CCSCEEEECSTTSSHHHHHHHHHHH--STTTTSCEEEEETTTSC-HHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC----CCCCeEEecCCCcCHHHHHHHHHHh--cCCCCCCeEEEecCCCC-HHHHHHHhc
Confidence 4688888888888887766543 2344699999999999999877552 11122233445555321 222222221
Q ss_pred HHccCCCCCcccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCC-----------CCcEEEEEccc
Q 006588 107 EALTGSTSNLDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGL-----------HGSKILITTRN 172 (639)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~-----------~~~~ilvTsr~ 172 (639)
..-.+...+... .....+.. .+. =.|+||+++.........+...+.... ...+||.||..
T Consensus 210 g~~~g~~tga~~--~~~g~~~~--a~~-gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 210 GYEKGAFTGAVS--SKEGFFEL--ADG-GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp CBCTTSSTTCCS--CBCCHHHH--TTT-SEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCCccc--ccCCceee--CCC-cEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 110001111000 00011111 111 367899998876555666776665421 24567777764
No 368
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.25 E-value=0.057 Score=64.60 Aligned_cols=99 Identities=20% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHHHHHHHh-ccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC
Q 006588 36 RNALVSMLL-CESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS 114 (639)
Q Consensus 36 ~~~l~~~L~-~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 114 (639)
...|..+|. ..- +..+++.|+|++|+||||||.+++.. ....-..++|++........ .++.++....
T Consensus 368 i~~LD~lLg~GGl----~~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~ 436 (1706)
T 3cmw_A 368 SLSLDIALGAGGL----PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPI-----YARKLGVDID 436 (1706)
T ss_dssp CHHHHHHTSSSSE----ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHH-----HHHHTTCCGG
T ss_pred cHHHHHHhccCCc----CCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHH-----HHHHcCCCHH
Confidence 345666664 111 24679999999999999999999884 33334579999988776653 2555554321
Q ss_pred -----CcccHHHHHHHHHHhc-CCceEEEEEeCCCCC
Q 006588 115 -----NLDALQSLLISIDESI-AGKRFLLVLDDVWDG 145 (639)
Q Consensus 115 -----~~~~~~~~~~~l~~~l-~~~~~LlvlDd~~~~ 145 (639)
...+.++..+.+.... ..+.-++|+|.+...
T Consensus 437 ~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 437 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTC
T ss_pred HeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHh
Confidence 1234555555554433 235569999998654
No 369
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.24 E-value=0.02 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|++|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998866
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.22 E-value=0.02 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+|+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998866
No 371
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.22 E-value=0.027 Score=58.00 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCcccchhhHHHHHHHHhcc-------CCc-CCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 26 EEEICGRVGERNALVSMLLCE-------SSE-QQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 26 ~~~~vgR~~~~~~l~~~L~~~-------~~~-~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...++|.++..+.+..++... ... .....+.+.++|++|+|||++|+.++.
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 346899999888887777331 000 011346699999999999999998877
No 372
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.21 E-value=0.027 Score=50.99 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|++|+||||+|+.+++
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998866
No 373
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.20 E-value=0.021 Score=53.10 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999998865
No 374
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.15 E-value=0.025 Score=51.97 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 375
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.13 E-value=0.053 Score=49.58 Aligned_cols=111 Identities=12% Similarity=0.004 Sum_probs=54.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC--cccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN--LDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l 130 (639)
...+.+++|+.|.||||.+...+.+.. .+-..++.+..... ...-...+...++..... ..+.+ .+...+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 457899999999999999988877533 22234444442211 111112344444322210 01111 222233
Q ss_pred CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccchH
Q 006588 131 AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNES 174 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~~ 174 (639)
.++-=+|++|++.-.+...+ .+...+.+ .+..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V-~~l~~l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIV-EVVQVLAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHH-HHHHHHHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHH-HHHHHHhh--CCCEEEEEecccc
Confidence 33334999999866543333 33333333 3678999998643
No 376
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.13 E-value=0.021 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 377
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.12 E-value=0.08 Score=44.48 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=40.3
Q ss_pred cEEeccCCCCc--ccchhhhcCCCccEEecCCCCCccccch-hhhhcccCceeecCCCCcc
Q 006588 469 RYLNLSGQKIE--KLPEALCELYNLEKLDICSCSCLKELPE-GIGKLINMKYLLNRDTDSV 526 (639)
Q Consensus 469 ~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~n~~~ 526 (639)
..++.+++.++ .+|..+ -.+|+.|+|++|. +..+|. .+..+++|+.|++++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 46778888887 888643 2368888998888 555554 4677888888988888653
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.11 E-value=0.021 Score=52.09 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+|+|.|++|+||||+|+.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 379
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.09 E-value=0.03 Score=48.97 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998876
No 380
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.07 E-value=0.055 Score=64.74 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCCC-----cccHHHHHHHH
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTSN-----LDALQSLLISI 126 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~l 126 (639)
+..++|-|+|+.|+||||||.+++. +.+.+-...+|+++....+..- ++.++....+ .+.-++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 4568999999999999999999988 4566667889999887766553 7777665422 23335555555
Q ss_pred HHhcC-CceEEEEEeCCCC
Q 006588 127 DESIA-GKRFLLVLDDVWD 144 (639)
Q Consensus 127 ~~~l~-~~~~LlvlDd~~~ 144 (639)
...++ +..-++|+|-|..
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 55544 3456999998843
No 381
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.06 E-value=0.063 Score=49.53 Aligned_cols=43 Identities=21% Similarity=0.094 Sum_probs=30.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
+.-.|++.|.||+||||+|..++.. ...+-..+..+.+.....
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVETHGR 47 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCTTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCCCCC
Confidence 4456999999999999999888874 333333566666665433
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.04 E-value=0.023 Score=52.42 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....|+|.|++|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999773
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.04 E-value=0.017 Score=51.92 Aligned_cols=23 Identities=39% Similarity=0.340 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998765
No 384
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.02 E-value=0.051 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988866
No 385
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.00 E-value=0.027 Score=53.68 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998866
No 386
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.99 E-value=0.06 Score=52.95 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=33.0
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCch
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDE 98 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 98 (639)
.+..++|+|+|-||+||||+|..++.. ...+-..|+-|++....+.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~~ 83 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHDS 83 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCCT
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCCH
Confidence 446788888899999999999888874 3333346788888755433
No 387
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.98 E-value=0.029 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|+.|+|||||++.++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998866
No 388
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.97 E-value=0.025 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998765
No 389
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.96 E-value=0.067 Score=48.36 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=54.7
Q ss_pred hhHHHHHhhCCceeEEecCCC-CCCCc----ccccccccCCCcEEeccCCCCc-----ccchhhhcCCCccEEecCCCCC
Q 006588 432 EILEELFRELTSLRALDFPSL-YLPSE----IPRNIKKLIHLRYLNLSGQKIE-----KLPEALCELYNLEKLDICSCSC 501 (639)
Q Consensus 432 ~~~~~~~~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~ 501 (639)
.....++..-+.|+.|+|++| .+... +...+..-..|+.|+|++|.|. .+...+..=+.|+.|+|++|.+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 344555666778888888875 53221 3344555567888888888877 3334454556777777777774
Q ss_pred ccc----cchhhhhcccCceeecCCC
Q 006588 502 LKE----LPEGIGKLINMKYLLNRDT 523 (639)
Q Consensus 502 ~~~----lp~~~~~l~~L~~L~l~~n 523 (639)
... +-..+..-+.|+.|++++|
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 322 1122233344666666543
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.95 E-value=0.02 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+.|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998866
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.94 E-value=0.026 Score=51.70 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998876
No 392
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.94 E-value=0.026 Score=51.80 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999987754
No 393
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.92 E-value=0.021 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+|||||++.++.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998765
No 394
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.91 E-value=0.025 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+++|.|++|+||||+++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.84 E-value=0.027 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988765
No 396
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.84 E-value=0.031 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+...+|+|.|+.|+|||||++.++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999998876
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.82 E-value=0.027 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+|+.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998866
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.78 E-value=0.033 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....|+|.|++|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988763
No 399
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.77 E-value=0.03 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.76 E-value=0.037 Score=59.04 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
...+++|.|++|+|||||++.++.. ....-..++++...+
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~--~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN--ACANKERAILFAYEE 319 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhCCCCEEEEEEeC
Confidence 5578999999999999999998873 222222356666544
No 401
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.75 E-value=0.04 Score=51.17 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=32.2
Q ss_pred cccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 29 ICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 29 ~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+-+.++...++.+.+.. +..+.++|.|.+|+|||||+.+++..
T Consensus 11 l~~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445566666666642 25689999999999999999988773
No 402
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.74 E-value=0.027 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+|+.+++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998765
No 403
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.72 E-value=0.14 Score=56.23 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 33 VGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 33 ~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
+...+.+...|.. .....|+||||+|||+.+.++.... ..+ ...+-+++.++..+.+++..+.
T Consensus 192 ~~Q~~AV~~al~~--------~~~~lI~GPPGTGKT~ti~~~I~~l--~~~-~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQ--------KELAIIHGPPGTGKTTTVVEIILQA--VKQ-GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHC--------SSEEEEECCTTSCHHHHHHHHHHHH--HHT-TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--------CCceEEECCCCCCHHHHHHHHHHHH--HhC-CCeEEEEcCchHHHHHHHHHHH
Confidence 3555667777752 2478999999999998877666532 112 3456777777766666655553
No 404
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.72 E-value=0.045 Score=51.99 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 36 RNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 36 ~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+..++.... +....+.++|++|+|||.+|.++++
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 344666665321 2356799999999999999998876
No 405
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.66 E-value=0.032 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.|++|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998866
No 406
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.63 E-value=0.032 Score=51.69 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998865
No 407
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.62 E-value=0.044 Score=51.99 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSE 94 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 94 (639)
...+++|.|++|+|||||++.++.... ...-..++|+....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~-~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEEccC
Confidence 457899999999999999998874211 12335566665543
No 408
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.58 E-value=0.039 Score=54.38 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..++|+|.|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999998877
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.58 E-value=0.036 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.+.|+|.|++|+||||||.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988773
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.56 E-value=0.17 Score=52.52 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=29.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
+...+++|.|+.|+|||||++.++.. ... ..+.+++...+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~ 331 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDT 331 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCT
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcc
Confidence 35679999999999999999998873 222 234555544333
No 411
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.55 E-value=0.083 Score=54.59 Aligned_cols=65 Identities=23% Similarity=0.169 Sum_probs=43.6
Q ss_pred HHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCC-chHHHHHHHHHH
Q 006588 38 ALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETF-DEFRIAKAMLEA 108 (639)
Q Consensus 38 ~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~il~~ 108 (639)
+..+.|.... ....++|.|.+|+|||+|+..++++. .+.+-+.++++-+.+.. ...+++.++...
T Consensus 154 rvID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 3445555443 34678999999999999998887742 12233677788776654 556777777653
No 412
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.54 E-value=0.037 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLAC 75 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~ 75 (639)
...+|+|.|++|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999886
No 413
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.53 E-value=0.33 Score=45.49 Aligned_cols=122 Identities=17% Similarity=0.107 Sum_probs=60.4
Q ss_pred ccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHc
Q 006588 30 CGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEAL 109 (639)
Q Consensus 30 vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 109 (639)
.=|+...+.+..++. . +-+.|.|+.|.|||.+|..++.. . -..++++. ....-..+....+.+ +
T Consensus 93 ~l~~~Q~~ai~~~~~--------~-~~~ll~~~tG~GKT~~a~~~~~~--~---~~~~liv~-P~~~L~~q~~~~~~~-~ 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLV--------D-KRGCIVLPTGSGKTHVAMAAINE--L---STPTLIVV-PTLALAEQWKERLGI-F 156 (237)
T ss_dssp CCCHHHHHHHHHHTT--------T-SEEEEEESSSTTHHHHHHHHHHH--S---CSCEEEEE-SSHHHHHHHHHHHGG-G
T ss_pred CcCHHHHHHHHHHHh--------C-CCEEEEeCCCCCHHHHHHHHHHH--c---CCCEEEEe-CCHHHHHHHHHHHHh-C
Confidence 345555555555543 1 12889999999999999877652 1 13344443 221111222222222 2
Q ss_pred cCC-C----C------C--cccHHHHHHHHHHhcCCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEcc
Q 006588 110 TGS-T----S------N--LDALQSLLISIDESIAGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTR 171 (639)
Q Consensus 110 ~~~-~----~------~--~~~~~~~~~~l~~~l~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr 171 (639)
+.. . . + ....+.+..... .+..+--+||+|+++......+..+...++ ...++.+|..
T Consensus 157 ~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 157 GEEYVGEFSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp CGGGEEEESSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred CCCeEEEEeCCCCCcCCEEEEeHHHHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 211 0 0 0 011233322222 233445699999998875555555544433 3345555543
No 414
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.52 E-value=0.034 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998755
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.52 E-value=0.042 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|++|+||||+++.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999988765
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.51 E-value=0.041 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+|+|.|++|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988774
No 417
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.05 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+....|+|.|.+|+|||||+..+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999988865
No 418
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.50 E-value=0.047 Score=51.69 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=30.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSET 95 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 95 (639)
...++.|.|.+|+|||++|..++.+. ....-..++|++....
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC
Confidence 45699999999999999999887632 2333456777776643
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.46 E-value=0.3 Score=50.24 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=38.8
Q ss_pred hHHHHHHHHhccCCc---CCCCeEEEEEEcCCCChHHHHHHHhcChhhHHhc-CCceEEEEeCCC
Q 006588 35 ERNALVSMLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHDEVKRQ-FDKILWVCVSET 95 (639)
Q Consensus 35 ~~~~l~~~L~~~~~~---~~~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~ 95 (639)
-.++|.+.+...... ..+.+++|.+.|.+|+||||++..++.. ...+ -..+.-+++...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~--l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF--LREKHKKKVLVVSADVY 140 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH--HHHTSCCCEEEEECCCS
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH--HHHhcCCeEEEEecCCC
Confidence 345566666543210 0245789999999999999999999874 3333 345666777643
No 420
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.42 E-value=0.029 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....|+|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.35 E-value=0.045 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..++++|.|++|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 467899999999999999998866
No 422
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.33 E-value=0.065 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 457999999999999999998877
No 423
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.30 E-value=0.12 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+...+|+|.|.+|+|||||+..++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999988763
No 424
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.29 E-value=0.038 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|++|+||||+++.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 425
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.26 E-value=0.024 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=16.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLAC 75 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~ 75 (639)
...+++|.|+.|+|||||++.++
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999887
No 426
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.24 E-value=0.046 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhc
Q 006588 54 LHIISIVGMGGIGKTTLAQLAC 75 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~ 75 (639)
..+|+|.|++|+||||+++.+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998774
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.24 E-value=0.076 Score=49.69 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....|+|.|++|+||||+++.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998874
No 428
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.20 E-value=0.045 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.++|+|.|++|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998866
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.16 E-value=0.047 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.++|+|.|++|+||||||..++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998766
No 430
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.11 E-value=0.059 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|++|+||||+++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999988873
No 431
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.11 E-value=0.14 Score=55.40 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.|+.|+|||||++.++.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 456899999999999999988865
No 432
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.03 E-value=0.023 Score=51.45 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHccCCCC--CcccHHHHHHHHHHhc
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALTGSTS--NLDALQSLLISIDESI 130 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 130 (639)
..++.+++|+.|.||||.+...+++....+ ..++.+..... ...-...+...++.... ...+.++ +.+.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g--~kV~v~k~~~d--~r~~~~~i~s~~g~~~~a~~~~~~~~----i~~~~ 78 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK--QKIQVFKPEID--NRYSKEDVVSHMGEKEQAVAIKNSRE----ILKYF 78 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC---------CEEECTTSCEEECEEESSSTH----HHHHC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeccC--ccchHHHHHhhcCCceeeEeeCCHHH----HHHHH
Confidence 457999999999999999988877533222 23333331110 00001112222221100 0011112 22233
Q ss_pred CCceEEEEEeCCCCCCccCchhhhHhhhcCCCCcEEEEEccch
Q 006588 131 AGKRFLLVLDDVWDGDYIKWEPFYHCLKKGLHGSKILITTRNE 173 (639)
Q Consensus 131 ~~~~~LlvlDd~~~~~~~~~~~l~~~l~~~~~~~~ilvTsr~~ 173 (639)
.++-=+|++|++...+....+. ...+.+ .+..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~-l~~l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEI-VNKIAE--SGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHH-HHHHHH--TTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHH-HHHHHh--CCCEEEEEeccc
Confidence 3333389999986643222332 333333 267899998854
No 433
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.02 E-value=0.025 Score=55.09 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+|+|.|++|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 434
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.93 E-value=0.05 Score=53.79 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 6899999999999999998766
No 435
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.92 E-value=0.042 Score=59.38 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCcccchhhHHHHHHHHhccCCc-----CCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 27 EEICGRVGERNALVSMLLCESSE-----QQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 27 ~~~vgR~~~~~~l~~~L~~~~~~-----~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..++|.++....+.-.+...... .-++..-|.|+|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 45788887666665544432100 0001116999999999999999988873
No 436
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.90 E-value=0.16 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...|+|.|++|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999998874
No 437
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.88 E-value=0.025 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+|+|.|++|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988773
No 438
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.84 E-value=0.049 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999988765
No 439
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.81 E-value=0.26 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.|+.|+|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999988765
No 440
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.79 E-value=0.16 Score=47.14 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.1
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
......|+|.|..|+||||+++.+.+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 335689999999999999999999884
No 441
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.79 E-value=0.17 Score=54.98 Aligned_cols=46 Identities=17% Similarity=-0.041 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCChHHHHHHHhcChhhHHh-cCCceEEEEeCCCCchH
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNHDEVKR-QFDKILWVCVSETFDEF 99 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~ 99 (639)
.+.++|+|++|+||||++..+........ .-...+.+.+.+..-..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~ 210 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHH
Confidence 46899999999999999987766322110 11235556555543333
No 442
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.78 E-value=0.046 Score=50.20 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred EEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHHHcc---------CCCCCcccHHHHHHHH
Q 006588 56 IISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLEALT---------GSTSNLDALQSLLISI 126 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~---------~~~~~~~~~~~~~~~l 126 (639)
+|+|.|+||+||+|.|+.+++. | +..+++.+ +++++-+..-. .......+.+-....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~------~-g~~~istG------dllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv 68 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE------K-GFVHISTG------DILREAVQKGTPLGKKAKEYMERGELVPDDLIIALI 68 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH------H-CCEEEEHH------HHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH------H-CCeEEcHH------HHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHH
Confidence 5789999999999999987663 2 34455433 22222111100 0001123444555666
Q ss_pred HHhcCCceEEEEEeCCCC
Q 006588 127 DESIAGKRFLLVLDDVWD 144 (639)
Q Consensus 127 ~~~l~~~~~LlvlDd~~~ 144 (639)
.+.+..... +|||++-.
T Consensus 69 ~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 69 EEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHCCSSSC-EEEESCCC
T ss_pred HHhhccCCc-eEecCCch
Confidence 666665443 67899854
No 443
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.73 E-value=0.084 Score=51.63 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+...+++|.|+.|+||||+++.++..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998874
No 444
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.69 E-value=0.096 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..++++|.|++|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998873
No 445
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.69 E-value=0.14 Score=51.27 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
+...+++|.|+.|+||||+++.++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999998874
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.63 E-value=0.052 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 447
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.63 E-value=0.054 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
. .+++|.|+.|+|||||.+.++.
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7899999999999999988765
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.62 E-value=0.055 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998866
No 449
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.60 E-value=0.048 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..|+|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998876
No 450
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.58 E-value=0.057 Score=49.49 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
+|+|.|++|+||||+|+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998866
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.55 E-value=0.059 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEEcCCCChHHHHHHHhcC
Q 006588 55 HIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998765
No 452
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.54 E-value=0.12 Score=51.24 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=34.8
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHH
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRI 101 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 101 (639)
+..+++++.|-||+||||+|..++.. ....-..++-+++....+....
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~~~~l~~~ 61 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDPAHNLSDA 61 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCSSCHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCCCCChhHH
Confidence 35689999999999999999888773 3333356777887755544433
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.52 E-value=0.058 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHhcC
Q 006588 56 IISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 454
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.50 E-value=0.058 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...+++|.|+.|+|||||++.++.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999988763
No 455
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.49 E-value=0.05 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999988765
No 456
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.46 E-value=0.12 Score=51.47 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=33.9
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcChhhHH--hcCCceEEEEeCCCCchHH
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNHDEVK--RQFDKILWVCVSETFDEFR 100 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~ 100 (639)
..+++++.|.||+||||+|..++.. .. ..-..++-+++....+...
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPAHNLSD 64 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSSCHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCCCChHH
Confidence 5689999999999999999888773 33 3345677777775544433
No 457
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.43 E-value=0.061 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 458
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.36 E-value=0.039 Score=48.92 Aligned_cols=23 Identities=43% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHhcCh
Q 006588 55 HIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
++++|.|++|+|||||++.+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988774
No 459
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.32 E-value=0.062 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.115 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
..+.++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 567999999999999999998875
No 460
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.31 E-value=0.054 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHhcChh
Q 006588 56 IISIVGMGGIGKTTLAQLACNHD 78 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~~ 78 (639)
+++|.|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999887743
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.31 E-value=0.066 Score=48.02 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHhcCh
Q 006588 56 IISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 56 ~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
-|+|.|.+|+|||||++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999873
No 462
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.31 E-value=0.18 Score=52.23 Aligned_cols=87 Identities=22% Similarity=0.245 Sum_probs=48.3
Q ss_pred eEEEEEEcCCCChHHHHHH-HhcChhhHH----hcCC-ceEEEEeCCCC-chHHHHHHHHHHcc------CCCCCcccH-
Q 006588 54 LHIISIVGMGGIGKTTLAQ-LACNHDEVK----RQFD-KILWVCVSETF-DEFRIAKAMLEALT------GSTSNLDAL- 119 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~-~~~~~~~~~----~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~------~~~~~~~~~- 119 (639)
...++|.|.+|+|||+||. .+++..... ++-+ .++++-+.+.. ++.++...+...=. ...+...+.
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 4568999999999999964 444421110 1133 46677776544 45566666654210 001111111
Q ss_pred ---------HHHHHHHHHhcCCceEEEEEeCC
Q 006588 120 ---------QSLLISIDESIAGKRFLLVLDDV 142 (639)
Q Consensus 120 ---------~~~~~~l~~~l~~~~~LlvlDd~ 142 (639)
-...+.++. .++.+|+++||+
T Consensus 242 ~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 112222332 578999999998
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.28 E-value=0.086 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...|+|.|.+|+|||||.+.+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998763
No 464
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.27 E-value=0.13 Score=49.33 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=30.2
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
++|+|.|-||+||||+|..++.. ...+-..++-+++....+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q~~ 42 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPKAD 42 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTTSC
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCCCC
Confidence 56777899999999999888873 333334678888765443
No 465
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.25 E-value=0.15 Score=55.08 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....++|.|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 456899999999999999987765
No 466
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.22 E-value=0.065 Score=51.29 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988865
No 467
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.17 E-value=0.16 Score=47.20 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=19.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....|+|.|++|+||||+++.+++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 468
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.16 E-value=0.064 Score=52.33 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 567899999999999999988765
No 469
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.14 E-value=0.082 Score=49.50 Aligned_cols=26 Identities=27% Similarity=0.141 Sum_probs=22.7
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+...+++|.|+.|+||||+++.++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34568999999999999999998876
No 470
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.13 E-value=0.052 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...|+|.|++|+||||+++.++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.08 E-value=0.067 Score=60.13 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=41.6
Q ss_pred ccccCCCCcccchhhHHHHHHHHhccCCcC-------CCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 21 TSLIDEEEICGRVGERNALVSMLLCESSEQ-------QKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 21 ~~~~~~~~~vgR~~~~~~l~~~L~~~~~~~-------~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.+...-.+.+|-++..++|.+.+.....+. -...+.+.++|++|+|||+||+.++..
T Consensus 471 ~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 344455668899999898888775332110 124567999999999999999999883
No 472
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.05 E-value=0.07 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 456899999999999999988865
No 473
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.04 E-value=0.15 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988865
No 474
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.04 E-value=0.15 Score=49.55 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=30.4
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCc
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFD 97 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 97 (639)
++|+|.|-||+||||+|..++.. ...+-..++-|++....+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q~~ 43 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPKAD 43 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSSSC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCCCC
Confidence 67888999999999999988874 333334677788775543
No 475
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.01 E-value=0.06 Score=49.48 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
..+++|.|+.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999988763
No 476
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.97 E-value=0.27 Score=53.57 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=33.9
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHH
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAML 106 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 106 (639)
+.+.|+|++|+|||+++..++.. ....-...+.+++.+...+.++...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~--l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYH--LARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 46889999999999998877653 222234566777776655555554443
No 477
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.91 E-value=0.67 Score=51.68 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...++|.|+.|+||||++..+..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999997766543
No 478
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.90 E-value=0.2 Score=46.87 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCChHHHHHHHhcCh
Q 006588 54 LHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
...|+|.|++|+||||+++.+.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 479
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.83 E-value=0.081 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.++|+|.|++|+||||||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36899999999999999998876
No 480
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.83 E-value=0.077 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999988866
No 481
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.82 E-value=0.058 Score=49.82 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999998866
No 482
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.82 E-value=0.29 Score=50.70 Aligned_cols=84 Identities=21% Similarity=0.169 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCCChHHHHHH-HhcChhhHHhcCC-ceEEEEeCCCC-chHHHHHHHHHHccCC------CCCccc-H---
Q 006588 53 GLHIISIVGMGGIGKTTLAQ-LACNHDEVKRQFD-KILWVCVSETF-DEFRIAKAMLEALTGS------TSNLDA-L--- 119 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~~~------~~~~~~-~--- 119 (639)
....++|.|.+|+|||+||. .+++. . .-+ .++++-+.+.. ++.++...+...=... .+...+ .
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~---~-~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQ---K-GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGG---G-SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHh---h-cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 34568999999999999964 45442 1 233 34666666544 4556666665521110 011111 1
Q ss_pred ------HHHHHHHHHhcCCceEEEEEeCC
Q 006588 120 ------QSLLISIDESIAGKRFLLVLDDV 142 (639)
Q Consensus 120 ------~~~~~~l~~~l~~~~~LlvlDd~ 142 (639)
-...+.++. .++.+|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 122222333 578999999998
No 483
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.80 E-value=0.07 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||.+.++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999988865
No 484
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.79 E-value=0.078 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||.+.++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999988865
No 485
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.78 E-value=0.082 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999988765
No 486
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.77 E-value=0.074 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....|+|.|..|+||||+|+.+++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999988763
No 487
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.77 E-value=0.07 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999988865
No 488
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.76 E-value=0.071 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||.+.++.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998876
No 489
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.75 E-value=0.07 Score=51.17 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999998866
No 490
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.72 E-value=0.19 Score=51.98 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCChHHHHHH-HhcChhhHHhcCC-ceEEEEeCCCC-chHHHHHHHHHHcc------CCCCCcccH-----
Q 006588 54 LHIISIVGMGGIGKTTLAQ-LACNHDEVKRQFD-KILWVCVSETF-DEFRIAKAMLEALT------GSTSNLDAL----- 119 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~il~~l~------~~~~~~~~~----- 119 (639)
...++|.|.+|+|||+||. .+++. . .-+ .++++-+.+.. ++.++...+...=. ...+...+.
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~---~-~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ---K-GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT---T-TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh---h-cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 4568999999999999964 55552 1 233 34666666544 55566666654210 001111111
Q ss_pred -----HHHHHHHHHhcCCceEEEEEeCC
Q 006588 120 -----QSLLISIDESIAGKRFLLVLDDV 142 (639)
Q Consensus 120 -----~~~~~~l~~~l~~~~~LlvlDd~ 142 (639)
-...+.++. .++.+|+++||+
T Consensus 251 a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 112222332 578999999998
No 491
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.69 E-value=0.081 Score=50.87 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988865
No 492
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.68 E-value=0.13 Score=53.96 Aligned_cols=46 Identities=11% Similarity=-0.116 Sum_probs=33.3
Q ss_pred CcccchhhHHHHHHHHhccCCcCCCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 28 EICGRVGERNALVSMLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 28 ~~vgR~~~~~~l~~~L~~~~~~~~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
....|.+..+.+++..... .+...+|.+.|++|+||||+|++++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~----~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPR----PKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCG----GGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccc----cccceEEEecccCCCCHHHHHHHHHHH
Confidence 4555666666666655321 224578999999999999999999773
No 493
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.62 E-value=0.1 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.-.|+|.|++|+|||||++.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45799999999999999998865
No 494
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.60 E-value=0.19 Score=47.94 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCCeEEEEEEcCCCChHHHHHHHhcCh
Q 006588 51 QKGLHIISIVGMGGIGKTTLAQLACNH 77 (639)
Q Consensus 51 ~~~~~~v~i~G~~GiGKTtLa~~~~~~ 77 (639)
.....++++.|.+|+||||++..++..
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999864
No 495
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.58 E-value=0.081 Score=50.75 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998876
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.55 E-value=0.098 Score=53.43 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|++|+|||||.+.++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999998876
No 497
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.54 E-value=0.1 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCChHHHHHHHhcC
Q 006588 54 LHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 54 ~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
.+-|.|.|++|+||||+|.++..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999988865
No 498
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.49 E-value=0.088 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCChHHHHHHHhcC
Q 006588 53 GLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 53 ~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
...+++|.|+.|+|||||++.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 446899999999999999988765
No 499
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.49 E-value=0.25 Score=45.38 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=31.5
Q ss_pred EEEEEEcCCCChHHHHHHHhcChhhHHhcCCceEEEEeCCCCchHHHHHHHHH
Q 006588 55 HIISIVGMGGIGKTTLAQLACNHDEVKRQFDKILWVCVSETFDEFRIAKAMLE 107 (639)
Q Consensus 55 ~~v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 107 (639)
..|++.|+.|+||||+++.+.+.... ..+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874322 22323443332222223344455544
No 500
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.47 E-value=0.091 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCeEEEEEEcCCCChHHHHHHHhcC
Q 006588 52 KGLHIISIVGMGGIGKTTLAQLACN 76 (639)
Q Consensus 52 ~~~~~v~i~G~~GiGKTtLa~~~~~ 76 (639)
....+|+|.|++|+||||+++.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999987765
Done!