Query 006589
Match_columns 639
No_of_seqs 367 out of 1200
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 11:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 7E-145 1E-149 1192.8 42.8 576 3-620 1-620 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 1.9E-89 4E-94 769.2 24.8 309 85-606 529-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 3.8E-76 8.3E-81 616.6 27.9 225 367-600 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 3.6E-64 7.8E-69 534.3 19.4 313 74-603 16-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 2.5E-30 5.4E-35 264.9 11.1 173 410-592 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 7.4E-29 1.6E-33 232.7 10.8 142 368-510 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 8.1E-18 1.8E-22 173.5 6.2 166 410-594 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.4 2.6E-06 5.6E-11 89.2 13.1 147 409-591 117-282 (283)
9 PRK05421 hypothetical protein; 98.3 7.5E-06 1.6E-10 84.5 13.4 126 413-594 135-261 (263)
10 PF03372 Exo_endo_phos: Endonu 98.1 7.2E-07 1.6E-11 85.3 -0.2 97 378-490 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.6 0.00036 7.9E-09 72.7 10.4 55 413-484 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.5 0.00042 9E-09 71.1 9.9 63 413-485 89-154 (268)
13 TIGR00633 xth exodeoxyribonucl 97.4 0.0014 3E-08 65.8 11.3 34 96-133 2-36 (255)
14 PTZ00297 pantothenate kinase; 97.1 0.0031 6.6E-08 79.3 12.7 69 411-485 131-206 (1452)
15 PLN03144 Carbon catabolite rep 96.0 0.025 5.4E-07 65.6 9.3 62 426-502 418-480 (606)
16 COG3021 Uncharacterized protei 95.9 0.046 1E-06 58.5 9.9 132 411-594 173-307 (309)
17 TIGR00195 exoDNase_III exodeox 95.3 0.094 2E-06 53.4 9.4 34 96-133 2-35 (254)
18 PRK13911 exodeoxyribonuclease 95.1 0.27 5.8E-06 51.0 12.3 35 96-133 2-36 (250)
19 PF14529 Exo_endo_phos_2: Endo 94.3 0.076 1.6E-06 46.9 5.0 33 557-589 86-119 (119)
20 smart00476 DNaseIc deoxyribonu 94.2 0.12 2.6E-06 54.7 7.1 44 426-485 143-187 (276)
21 KOG3873 Sphingomyelinase famil 93.8 0.31 6.7E-06 53.4 9.4 198 372-596 73-294 (422)
22 PRK13911 exodeoxyribonuclease 92.9 0.043 9.4E-07 56.8 1.2 53 417-485 91-147 (250)
23 COG0708 XthA Exonuclease III [ 91.0 0.044 9.6E-07 57.5 -1.3 33 96-133 2-35 (261)
24 KOG2756 Predicted Mg2+-depende 89.1 0.95 2.1E-05 48.1 6.6 64 415-488 194-257 (349)
25 KOG2338 Transcriptional effect 84.6 1.6 3.4E-05 49.6 5.6 94 382-485 204-303 (495)
26 PRK11756 exonuclease III; Prov 79.9 0.48 1E-05 48.7 -0.5 34 96-133 2-35 (268)
27 TIGR00633 xth exodeoxyribonucl 74.1 1.3 2.8E-05 44.5 0.7 53 425-487 100-154 (255)
28 TIGR00195 exoDNase_III exodeox 70.7 1.5 3.2E-05 44.7 0.2 52 426-487 98-151 (254)
29 PRK15251 cytolethal distending 66.3 14 0.0003 39.4 6.4 55 412-485 141-195 (271)
30 PRK15251 cytolethal distending 63.5 6.2 0.00013 42.0 3.1 43 95-139 25-71 (271)
31 PF03372 Exo_endo_phos: Endonu 63.4 1.9 4.2E-05 41.1 -0.6 33 98-133 1-38 (249)
32 PRK05421 hypothetical protein; 61.1 4.7 0.0001 41.8 1.8 36 94-133 43-78 (263)
33 COG2374 Predicted extracellula 25.6 2.8E+02 0.0061 33.8 8.7 65 425-500 621-697 (798)
34 cd01251 PH_centaurin_alpha Cen 25.2 52 0.0011 29.5 2.2 34 129-163 69-102 (103)
35 PF08053 Tna_leader: Tryptopha 22.4 14 0.0003 25.0 -1.5 14 19-32 8-21 (24)
36 KOG3870 Uncharacterized conser 21.1 40 0.00087 37.9 0.7 16 471-486 349-364 (434)
37 PF07494 Reg_prop: Two compone 20.3 45 0.00097 22.5 0.6 8 94-101 17-24 (24)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=6.8e-145 Score=1192.77 Aligned_cols=576 Identities=46% Similarity=0.830 Sum_probs=476.4
Q ss_pred cccCCCCCCcccchHHHHHHHhhccCCCCCCCCCCCCCCCCCCCcchhhhhcccC--------Ccccccc------c---
Q 006589 3 TQRSKHHQPELFWPRVVMRKWLNISTKDSDFSADTDEDDIDGDSDTEEFAQSQFR--------VPKEEEA------Q--- 65 (639)
Q Consensus 3 m~~~~~~~~~~~Wp~~v~~Kwlni~~~~~df~ad~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~--- 65 (639)
||.+++|++|+||||+||||||||++|++||+||+.+++.++|+|.+++...+.. +.+.+++ +
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 7888889999999999999999999999999999988755556666554432111 1111111 1
Q ss_pred CCCCCChhHHHhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeecCCCcccccC
Q 006589 66 YDPNETFPRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAE 145 (639)
Q Consensus 66 ~~~~~~~~~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEiV~Lna~~vl~~~ 145 (639)
+.+++..+++|||++|++|+|||+++++|||||||||||+.|+.+++|.+||..++|||||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 23566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhcccCCCCCccccCCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCc
Q 006589 146 DSRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKP 225 (639)
Q Consensus 146 d~~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (639)
++.|+++|+.+|+++||+..+..+++||||+||||++ .+++ +++|++.|+|+ ||+++.+..|....+.
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~----~~~e~~~~~d~------~~~~~~~~~~~~~~~~- 228 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI----VADELAEEVDS------LPLEMMNNEFIDAATG- 228 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc----hhhhhhhhccc------Chhhhccccccccccc-
Confidence 9999999999999999999999999999999999998 5555 78999999876 6676655433111110
Q ss_pred ccccccccccccccccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccchhcccccccccCCCCCCCC
Q 006589 226 VKMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPP 305 (639)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~ 305 (639)
+.......+++++++++ ++ .+..+...++++|+|+||+|+||||.|||+|
T Consensus 229 ------------------~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p 278 (621)
T PLN03191 229 ------------------CPSLEPERNKNIGWPEH-----SL-------DATPQVVSSNSKLRRVFSSSARLGFKWPENP 278 (621)
T ss_pred ------------------ccccchhhccccCCccc-----cc-------ccCcccccccccceeeeccccccccCCCCCc
Confidence 01111345566665531 11 1112223467899999999999999999999
Q ss_pred ccccccccccCCCccccc-cccccC-ccc-------------ccccCCCCCccc-chhHHHHHHhhhH----HHH--Hhh
Q 006589 306 LNLLTQKVLERPNSLKTV-KSFKTS-NSF-------------RRYSSFKPAVDD-MSSELALLAEIDI----ETL--MKR 363 (639)
Q Consensus 306 ~~~~~~~~~~~~~s~~~~-~~~~~~-~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~~ 363 (639)
+++++|+...+.++++.. .+|... .++ ....+++++++. ...+..++++++. +.. ...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
T PLN03191 279 SLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCR 358 (621)
T ss_pred cccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhc
Confidence 999999887665544331 111110 000 001122223222 2233444555544 333 345
Q ss_pred cCCCCeEEEEeeehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccH
Q 006589 364 KRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE 443 (639)
Q Consensus 364 ~~~~~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~ 443 (639)
.....|++|.|+|||||+|+||||++++++|++|++++|+||+||++||||||+|+|+|++|+||||||||+||++++++
T Consensus 359 ~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~ 438 (621)
T PLN03191 359 KVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAE 438 (621)
T ss_pred cCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCccc
Q 006589 444 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFD 523 (639)
Q Consensus 444 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 523 (639)
++||+|+.+|++++.|........|..|.+||+|||||||||||++++++++++|++++|+.||++|||+.|+++|++|.
T Consensus 439 ~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 518 (621)
T PLN03191 439 QRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFD 518 (621)
T ss_pred HHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccC
Confidence 99999999999999997654555688999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcccCCCcccccCCCcccCCC--CCCCCCCCccccceeecCCCcEEEeeccccCCCCCCCCceeEEEEEEEecCh
Q 006589 524 GWSEGTLIFAPTYKYELNSEKYYGED--PKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSP 601 (639)
Q Consensus 524 gf~Eg~I~FpPTYKy~~~sd~Y~~~~--~~~kkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~V~vi~~ 601 (639)
||+||+|+|||||||+.|++.|++.+ ++.|+|+|||||||||++++++++.|.+.++++||||||+|+|.++|+++++
T Consensus 519 GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~ 598 (621)
T PLN03191 519 GWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDH 598 (621)
T ss_pred CcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCH
Confidence 99999999999999999999998643 4568999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccc---ccchhh
Q 006589 602 RKLQRALTLTDAE---IENEDV 620 (639)
Q Consensus 602 ~klqr~l~~~~~~---~~~~~~ 620 (639)
+|+||++++++++ |+||..
T Consensus 599 ~k~q~~~~~~~a~~~~~~~~~~ 620 (621)
T PLN03191 599 RKLQRALNVNSAAASAVHPEPS 620 (621)
T ss_pred HHHHhhhhcchhhhhccCCccC
Confidence 9999999999999 888764
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-89 Score=769.22 Aligned_cols=309 Identities=41% Similarity=0.720 Sum_probs=289.0
Q ss_pred cccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeecCCCcccccCCCCchhhHHHHHH
Q 006589 85 AQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMN------EPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIR 158 (639)
Q Consensus 85 ~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~~------~~~DIyvlGfQEiV~Lna~~vl~~~d~~~~~~W~~~i~ 158 (639)
.+|+..++||||||||||||+.+....||++||++. .++|||||||||||+||||||+.|+. ...+.|++.|+
T Consensus 529 ~eyt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~-tk~~~Wee~i~ 607 (1080)
T KOG0566|consen 529 SEYTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAST-TKRRFWEEKIL 607 (1080)
T ss_pred hhhccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccCh-HHHHHHHHHHH
Confidence 459999999999999999997766667899999963 37999999999999999999999864 45899999999
Q ss_pred HHhcccCCCCCccccCCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccc
Q 006589 159 DTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACA 238 (639)
Q Consensus 159 ~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (639)
++||+.
T Consensus 608 ~~Ln~~-------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 608 KTLNRY-------------------------------------------------------------------------- 613 (1080)
T ss_pred HHhcCC--------------------------------------------------------------------------
Confidence 999884
Q ss_pred cccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccchhcccccccccCCCCCCCCccccccccccCCC
Q 006589 239 DSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPN 318 (639)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~~~~~ 318 (639)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCcccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehhhheeeeeeecccccccccee
Q 006589 319 SLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVR 398 (639)
Q Consensus 319 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~ 398 (639)
..+|+++.|.||||++|.+|+|.+..++|++|.
T Consensus 614 -----------------------------------------------~~kYvlL~s~QlvGv~L~iF~r~~~~p~Ik~V~ 646 (1080)
T KOG0566|consen 614 -----------------------------------------------KNKYVLLRSEQLVGVCLLLFIRPDHAPYIKDVA 646 (1080)
T ss_pred -----------------------------------------------CCceEEEehhhhheeeEEEEEcccccchhhhcc
Confidence 015899999999999999999999999999999
Q ss_pred EeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEE
Q 006589 399 VSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERII 478 (639)
Q Consensus 399 vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~If 478 (639)
.++++||++|..||||||+|||.++.|+|||||+|||||+.+. .+||.||.+|.++++|+ +.+.|.+||+||
T Consensus 647 ~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv--~ERn~DY~tI~r~l~Fp------~Gr~I~~HD~if 718 (1080)
T KOG0566|consen 647 GDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNV--EERNEDYKTIARKLRFP------RGRMIFSHDYIF 718 (1080)
T ss_pred cceeecccccccCCCceEEEEEEeccccEEEEecccccccchH--hhhhhhHHHHHHhcccc------CCccccCCceEE
Confidence 9999999999999999999999999999999999999999874 67999999999999995 456899999999
Q ss_pred EeCccCccccCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccCCCCCCCCCCCc
Q 006589 479 WLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPS 558 (639)
Q Consensus 479 w~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PA 558 (639)
|||||||||+|++++|+.+|.+++|+.|+++|||.+|+.+|.+|.||.|++|+|+|||||+.||++||+ ++|+|+||
T Consensus 719 W~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YDT---SeK~R~PA 795 (1080)
T KOG0566|consen 719 WLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYDT---SEKCRTPA 795 (1080)
T ss_pred EecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCcccc---chhccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 56999999
Q ss_pred cccceeecCCCcEEEeeccccCCCCCCCCceeEEEEEEEecChhhhhh
Q 006589 559 WCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQR 606 (639)
Q Consensus 559 WCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~V~vi~~~klqr 606 (639)
|||||||++..+.++.|.+.++++||||||+|+|.++|..++.+|..+
T Consensus 796 WTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~ 843 (1080)
T KOG0566|consen 796 WTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLR 843 (1080)
T ss_pred chhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHH
Confidence 999999999999999999999999999999999999999999876554
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=3.8e-76 Score=616.57 Aligned_cols=225 Identities=38% Similarity=0.691 Sum_probs=205.9
Q ss_pred CCeEEEEeeehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHH
Q 006589 367 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 446 (639)
Q Consensus 367 ~~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rR 446 (639)
..|+++++.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||++|+++ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999875 6799
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCCh-HHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCc
Q 006589 447 NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY-EKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 525 (639)
Q Consensus 447 N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 525 (639)
|+|+.+|++.+.|+... ...+.+||++||||||||||++.+ ++++++|++++|..||++|||+.+++++.+|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999999885321 112678999999999999999988 8999999999999999999999999999999999
Q ss_pred ccCCcccCCCcccc-cCCCcccCCCCCCCCCCCccccceeecC--CCcEEEe-ecc-ccCCCCCCCCceeEEEEEEEecC
Q 006589 526 SEGTLIFAPTYKYE-LNSEKYYGEDPKVGRRNPSWCDRILSYG--KGMRLLN-YRR-NEIKMSDHRPVTATYMAEVEVFS 600 (639)
Q Consensus 526 ~Eg~I~FpPTYKy~-~~sd~Y~~~~~~~kkR~PAWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHrPV~A~F~v~V~vi~ 600 (639)
.|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||+|.|.+.+..++
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~---~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT---SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC---cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 99999999999999 99999985 46899999999999994 4566665 987 47999999999999999998653
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-64 Score=534.32 Aligned_cols=313 Identities=36% Similarity=0.597 Sum_probs=280.9
Q ss_pred HHHhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeecCCCcccccCCCCc
Q 006589 74 RIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM----NEPADIYVLGLQEIVPLTAGNIFGAEDSRP 149 (639)
Q Consensus 74 ~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~----~~~~DIyvlGfQEiV~Lna~~vl~~~d~~~ 149 (639)
.++.++++ |+..+++.||++|+|++|+.|. .++..||++ .+.+|+||+||||+|+|+++.|++++....
T Consensus 16 ~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~r 88 (460)
T COG5411 16 VLRQRRSK-----YVIEKDVSIFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDR 88 (460)
T ss_pred HHHHHhhh-----heeecceeeEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCcccc
Confidence 45555554 9999999999999999998773 478999997 246899999999999999999998875554
Q ss_pred hhhHHHHHHHHhcccCCCCCccccCCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCccccc
Q 006589 150 VSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMF 229 (639)
Q Consensus 150 ~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (639)
...|++.+-.+||. ..
T Consensus 89 l~~wes~~~~~Ln~-~~--------------------------------------------------------------- 104 (460)
T COG5411 89 LRIWESKVLDCLNG-AQ--------------------------------------------------------------- 104 (460)
T ss_pred cchhHHHHHHHhcc-cc---------------------------------------------------------------
Confidence 58899888877776 11
Q ss_pred ccccccccccccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccchhcccccccccCCCCCCCCcccc
Q 006589 230 TNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLL 309 (639)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~ 309 (639)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCccccccccccCcccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehhhheeeeeeecc
Q 006589 310 TQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRS 389 (639)
Q Consensus 310 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~SkqMvGi~L~Vfvr~~ 389 (639)
...+|.++.+.||.|++|.||.+.+
T Consensus 105 -------------------------------------------------------~~eky~~l~s~q~~~~~~~vf~~~~ 129 (460)
T COG5411 105 -------------------------------------------------------SDEKYSLLRSPQLGGILLRVFSLAT 129 (460)
T ss_pred -------------------------------------------------------cCCceEEecchhccCcceEEeeecc
Confidence 0135778888899999999999999
Q ss_pred ccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 006589 390 LRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPK 469 (639)
Q Consensus 390 l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~ 469 (639)
-.+.+.+|...+-+||++|..+|||+|+++|+...++||||+|||+||..+ .++|+.||+.|.+.++|+. ..
T Consensus 130 ~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~------g~ 201 (460)
T COG5411 130 NLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR------GL 201 (460)
T ss_pred ccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC------Cc
Confidence 999999999999999999999999999999999999999999999999876 5789999999999999952 35
Q ss_pred ccCCcceEEEeCccCccccCChHHHHHHHhhhc--hHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccC
Q 006589 470 SICDHERIIWLGDLNYRINLPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYG 547 (639)
Q Consensus 470 ~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~ 547 (639)
.|.+||+|||+|||||||++.+++++..+...+ +..|+++|||..|+..|.+|.||+|..|+|||||||+.|+++|++
T Consensus 202 ~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydt 281 (460)
T COG5411 202 RIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYDT 281 (460)
T ss_pred eecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCccccc
Confidence 789999999999999999999999998887776 788999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCccccceeecCCCcEEEeecccc-CCCCCCCCceeEEEEEEEecChhh
Q 006589 548 EDPKVGRRNPSWCDRILSYGKGMRLLNYRRNE-IKMSDHRPVTATYMAEVEVFSPRK 603 (639)
Q Consensus 548 ~~~~~kkR~PAWCDRIL~~g~~i~~l~Y~s~e-~~~SDHrPV~A~F~v~V~vi~~~k 603 (639)
+ .|.|+||||||||+++...+.++|.+.+ +++||||||+|+|.+.+.++++.+
T Consensus 282 s---dk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 282 S---DKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSK 335 (460)
T ss_pred c---ccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcch
Confidence 4 5899999999999999889999999987 999999999999999999998754
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=2.5e-30 Score=264.90 Aligned_cols=173 Identities=21% Similarity=0.306 Sum_probs=130.0
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCccH---------HHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006589 410 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE---------LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 480 (639)
Q Consensus 410 lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~---------~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~ 480 (639)
++.||.+.+|++|+++.|||||+||.+++.+.+. ..|..++..|+.+ +. ..+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~--------~~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CS--------AFISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hh--------hccCCCCcEEEe
Confidence 7899999999999999999999999999987642 4688899999875 21 122357899999
Q ss_pred CccCccccCCh-HH-HH------HHHh------hhchHHHhhhhhhHHHHhc-------------CCcccCcccCCcccC
Q 006589 481 GDLNYRINLPY-EK-TR------ELIS------KKQWSKLAESDQLLRELRK-------------GRAFDGWSEGTLIFA 533 (639)
Q Consensus 481 GDLNYRI~l~~-~~-v~------~lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 533 (639)
||||||++... .+ .+ ..++ ...|.+||++|||..|+++ .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 99999999532 11 11 0111 2468899999999999985 678889999999999
Q ss_pred CCccccc-----CC-----------Cccc---------CC-------------C-----------------CCCCCCCCc
Q 006589 534 PTYKYEL-----NS-----------EKYY---------GE-------------D-----------------PKVGRRNPS 558 (639)
Q Consensus 534 PTYKy~~-----~s-----------d~Y~---------~~-------------~-----------------~~~kkR~PA 558 (639)
||||--. +. ..|. ++ + .+.+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 9999321 10 0111 00 0 123589999
Q ss_pred cccceeecCCC----------------------------cEEEeeccccCCCCCCCCceeEE
Q 006589 559 WCDRILSYGKG----------------------------MRLLNYRRNEIKMSDHRPVTATY 592 (639)
Q Consensus 559 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHrPV~A~F 592 (639)
|||||||...+ .....|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999997422 23467889999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.4e-29 Score=232.74 Aligned_cols=142 Identities=47% Similarity=0.720 Sum_probs=128.7
Q ss_pred CeEEEEeeehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHH
Q 006589 368 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 447 (639)
Q Consensus 368 ~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN 447 (639)
.|++++++||+|+++.+|++.++..++.+++++++++|+||++||||+|++++.++++++|||||||++|.++.+ +.||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998754 2399
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCC-cceEEEeCccCccccCC-hHHHHHHHhhhchHHHhhhh
Q 006589 448 ADVHEIHRRTHFRSHSEIGFPKSICD-HERIIWLGDLNYRINLP-YEKTRELISKKQWSKLAESD 510 (639)
Q Consensus 448 ~D~~eIl~r~~F~~~~~~~~P~~I~d-hD~Ifw~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 510 (639)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|..|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999976554455555554 89999999999999988 88899999999998888765
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.71 E-value=8.1e-18 Score=173.50 Aligned_cols=166 Identities=26% Similarity=0.403 Sum_probs=108.7
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCcc---------HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006589 410 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---------ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 480 (639)
Q Consensus 410 lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d---------~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~ 480 (639)
++.||-.-.++.|++.-|.|||.||-+...+-. -.+|.+.+.-+|.++.= .=+..|.+|.|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 577999999999999999999999977654321 24566666666655321 11235689999
Q ss_pred CccCccccCCh-----------HHHH--------HH---------------HhhhchH-------------HHhhhhhhH
Q 006589 481 GDLNYRINLPY-----------EKTR--------EL---------------ISKKQWS-------------KLAESDQLL 513 (639)
Q Consensus 481 GDLNYRI~l~~-----------~~v~--------~l---------------I~~~~~~-------------~LL~~DQL~ 513 (639)
|||||||+... +.+. ++ |+++.|+ .++.+|.-.
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~dkEl 303 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYDKEL 303 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcchHH
Confidence 99999998421 1111 11 1222222 222332111
Q ss_pred HHHhcCCcccC-cccCCcccCCCcccccCCCcccCCCCCCCCCCCccccceeecCCC----------cEEEeecc--ccC
Q 006589 514 RELRKGRAFDG-WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKG----------MRLLNYRR--NEI 580 (639)
Q Consensus 514 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g~~----------i~~l~Y~s--~e~ 580 (639)
..|.. ..|..|.|||||.|..+... .+...+.|+||||||||+.... -+.+.|.. .+.
T Consensus 304 ------~nf~~kl~E~~i~FpPsypysed~~~---~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~ 374 (391)
T KOG1976|consen 304 ------ANFAFKLKEETIFFPPSYPYSEDDSG---KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEK 374 (391)
T ss_pred ------HHHHHHHhheeecCCCCCCCCcCccc---hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccccc
Confidence 12333 68899999999999965422 1122468999999999997531 23467887 478
Q ss_pred CCCCCCCceeEEEE
Q 006589 581 KMSDHRPVTATYMA 594 (639)
Q Consensus 581 ~~SDHrPV~A~F~v 594 (639)
++-|||||+..|.+
T Consensus 375 c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 375 CVGDHKPVFLHASI 388 (391)
T ss_pred ccCCCcceEEEEee
Confidence 99999999998865
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.42 E-value=2.6e-06 Score=89.22 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=86.3
Q ss_pred ccccccEEEEEEEEcCeEEEEEeecCCCCCC----CccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccC
Q 006589 409 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEK----DGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 484 (639)
Q Consensus 409 ~lGNKGaVsVs~~l~~ts~cFVn~HLaage~----~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLN 484 (639)
...+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.- ...| ..+.+|++||||
T Consensus 117 ~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~-----~~~~----~~~pvIl~GDfN 187 (283)
T TIGR03395 117 NLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS-----KNIP----KDETVLIGGDLN 187 (283)
T ss_pred cccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh-----ccCC----CCceEEEEeeCC
Confidence 4578999999999999999999999998532 11246799999999875321 1122 235699999999
Q ss_pred ccccCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccCCCCCCCCCCCcccccee
Q 006589 485 YRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 564 (639)
Q Consensus 485 YRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL 564 (639)
..=+ ..+...+ ...+.... .+|. .|.|-|+...+.|.... . .+-.|.+-||||
T Consensus 188 ~~~~--s~~~~~m---------------l~~l~~~~--p~~~------g~~~T~d~~~N~~a~~~-~-~~~~~~~lDyvl 240 (283)
T TIGR03395 188 VNKG--SNEYHDM---------------FKTLNVSE--PRYV------GVPATWDATTNSIAKYY-Y-PKEEPEYLDYIF 240 (283)
T ss_pred CCCC--CHHHHHH---------------HHHhcccC--CCcC------CCCCCcCCCcCchhhhh-c-CCCCcceEEEEE
Confidence 7422 1111111 11111110 1121 23444566555554311 0 122366899999
Q ss_pred ecCCCcE----------EEee----cc-ccCCCCCCCCceeE
Q 006589 565 SYGKGMR----------LLNY----RR-NEIKMSDHRPVTAT 591 (639)
Q Consensus 565 ~~g~~i~----------~l~Y----~s-~e~~~SDHrPV~A~ 591 (639)
.++...+ ..+. .. .-..+|||-||++.
T Consensus 241 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 241 VSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred EECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 9853221 1111 11 23578999999974
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.32 E-value=7.5e-06 Score=84.46 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=76.4
Q ss_pred ccEEEEEEEE-cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCCh
Q 006589 413 KGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY 491 (639)
Q Consensus 413 KGaVsVs~~l-~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~ 491 (639)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. ... ..+|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~~--------~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HHS--------GPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hCC--------CCEEEEcccccCcccch
Confidence 7888888888 566799999999875332 2468888888876431 111 24999999994111000
Q ss_pred HHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccCCCCCCCCCCCccccceeecCCCcE
Q 006589 492 EKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMR 571 (639)
Q Consensus 492 ~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g~~i~ 571 (639)
.. +..+++ +. |+. ..+|++.-.+ ..+ ..| -|+||.. ++.
T Consensus 200 ~~---------l~~~~~------~~-------~l~--~~~~~~~~~~----~~~-------~~~----ID~I~~~--~~~ 238 (263)
T PRK05421 200 NA---------LKRFAR------EL-------GLK--EVRFTDDQRR----RAF-------GRP----LDFVFYR--GLN 238 (263)
T ss_pred HH---------HHHHHH------Hc-------CCC--ccCcCCcccc----ccc-------CCC----cceEEEC--CcE
Confidence 00 111111 00 111 1234433211 011 134 5999974 677
Q ss_pred EEeeccccCCCCCCCCceeEEEE
Q 006589 572 LLNYRRNEIKMSDHRPVTATYMA 594 (639)
Q Consensus 572 ~l~Y~s~e~~~SDHrPV~A~F~v 594 (639)
+.++...+...|||+||.|.|.+
T Consensus 239 v~~~~v~~~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 239 VSKASVLVTRASDHNPLLVEFSL 261 (263)
T ss_pred EEEEEcCCCCCCCccCEEEEEEe
Confidence 77777777889999999999975
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.07 E-value=7.2e-07 Score=85.34 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=53.4
Q ss_pred hhheeeeeeeccccccccceeEeEEEeecc---cccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHH
Q 006589 378 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVM---GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIH 454 (639)
Q Consensus 378 vGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl 454 (639)
.+..+.|++|.++...+........+.+.. ....+++.+.+++. +..|+++|+|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 556678888887654444333322222222 23455666667666 9999999999998542 2333333333
Q ss_pred HhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCC
Q 006589 455 RRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLP 490 (639)
Q Consensus 455 ~r~~-F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~ 490 (639)
..+. +.. ..+ ...+|++||||.+..-.
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 3221 100 000 01599999999987643
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.60 E-value=0.00036 Score=72.72 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=42.3
Q ss_pred ccEEEEEEEEc-CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccC
Q 006589 413 KGSVSVSMSIH-QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 484 (639)
Q Consensus 413 KGaVsVs~~l~-~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLN 484 (639)
.|++-+.+... +..|-+||+||.=.+ ..|.++...|+....+. . -..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~--------~----~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLP--------A----LNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCc--------c----cCceEEEccCC
Confidence 68888888885 679999999999554 46999999998743332 1 11599999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.54 E-value=0.00042 Score=71.10 Aligned_cols=63 Identities=8% Similarity=0.160 Sum_probs=37.0
Q ss_pred ccEEEEEEEEcCeEEEEEeecCCCCCCC---ccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 413 KGSVSVSMSIHQTLFCFVCAHLTSGEKD---GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 413 KGaVsVs~~l~~ts~cFVn~HLaage~~---~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
.+.+.+.+...+..|.|+|+|++.+... .....|.+.+..|...+.-. .. ....+|++||||-
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~--------~~~pvIl~GDfN~ 154 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE--LS--------PDNPLLIMGDMNI 154 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH--hc--------cCCCEEEEeeccc
Confidence 4778888877655699999999887532 11223444444443322100 00 1234999999996
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.39 E-value=0.0014 Score=65.78 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=23.2
Q ss_pred EEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDLDI-DDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~dL-~~WL~~~~~~DIyvlGfQEi 133 (639)
.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 57899999954322 244 7777554 4587 678998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.14 E-value=0.0031 Score=79.33 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=41.7
Q ss_pred ccccEEEEEEEEc----C-eEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcC--CCCCCCCCCCcccCCcceEEEeCcc
Q 006589 411 GNKGSVSVSMSIH----Q-TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH--FRSHSEIGFPKSICDHERIIWLGDL 483 (639)
Q Consensus 411 GNKGaVsVs~~l~----~-ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~--F~~~~~~~~P~~I~dhD~Ifw~GDL 483 (639)
.+||.+-+.+.+. + ..+-|+|+||....... .|.+++.+|.+-.. ...... -..+.+...+|++|||
T Consensus 131 ~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~---~R~~Q~~ql~~~i~~~i~~~~~---~~~~~~~~PvILaGDF 204 (1452)
T PTZ00297 131 VRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLP---STSSQVQETRRFVESVIANVYE---QNNDGAEIPFVIAGDF 204 (1452)
T ss_pred cccceEEEEEEccccCCCCceEEEEEeCCCCCCCcc---hHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCEEEEeeC
Confidence 5789988888884 2 57999999999875432 35555555543211 100000 0011223469999999
Q ss_pred Cc
Q 006589 484 NY 485 (639)
Q Consensus 484 NY 485 (639)
|=
T Consensus 205 N~ 206 (1452)
T PTZ00297 205 NI 206 (1452)
T ss_pred CC
Confidence 94
No 15
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=96.01 E-value=0.025 Score=65.58 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=43.4
Q ss_pred EEEEEeecCCCCCCCccHHHHHHHHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhc
Q 006589 426 LFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQ 502 (639)
Q Consensus 426 s~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~~ 502 (639)
.||++|+||..+..-. .-|..+...|++.+. +.. ..+.| ||++||||- .+.+.+.++|.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~--~~~~P--------vIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA--SADIP--------MLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh--cCCCc--------eEEeccCCC---CCCChhhhhhhcCC
Confidence 6999999997665433 357778887776542 210 11233 999999997 77888888887764
No 16
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.046 Score=58.51 Aligned_cols=132 Identities=24% Similarity=0.353 Sum_probs=71.4
Q ss_pred ccccEEEEEEEE-cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccC
Q 006589 411 GNKGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINL 489 (639)
Q Consensus 411 GNKGaVsVs~~l-~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l 489 (639)
+-||++.+.... +++.+..+|.|..--.-..+ ..| ++..++.+.+. +..-| +|++||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~-~~~-~ql~~l~~~i~-----~~~gp--------vIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTD-PQR-AQLLELGDQIA-----GHSGP--------VILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCcc-HHH-HHHHHHHHHHH-----cCCCC--------eEEeecCCC---c
Confidence 457777766554 47899999999984433223 344 66666665421 11123 999999996 2
Q ss_pred ChHHH-HHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccCCCCCCCCCCCcc-ccceeecC
Q 006589 490 PYEKT-RELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSW-CDRILSYG 567 (639)
Q Consensus 490 ~~~~v-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAW-CDRIL~~g 567 (639)
+-..+ +.+ ..|...+.. .+.| -.| ..|-|+ . ..|.+.| .|.|+++|
T Consensus 235 pWS~~~~R~------~~l~~~~~~---~~aG-----~~~--~~~~p~--------~--------~~r~~g~PIDhvf~rg 282 (309)
T COG3021 235 PWSRTAKRM------AALGGLRAA---PRAG-----LWE--VRFTPD--------E--------RRRAFGLPIDHVFYRG 282 (309)
T ss_pred chhHHHHHH------HHhcccccc---hhcc-----CCc--cccCHH--------H--------HhhccCCCcceeeecC
Confidence 22221 111 112111111 1112 011 112111 1 1222333 79999998
Q ss_pred CCcEEEeeccccCCCCCCCCceeEEEE
Q 006589 568 KGMRLLNYRRNEIKMSDHRPVTATYMA 594 (639)
Q Consensus 568 ~~i~~l~Y~s~e~~~SDHrPV~A~F~v 594 (639)
.....=.+.+.+-|||+||.+.|+.
T Consensus 283 --l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 283 --LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred --cchhhhhhccccCCCCCceEEEEEe
Confidence 4443444556689999999999974
No 17
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=95.28 E-value=0.094 Score=53.37 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=23.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
-|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 57899999943222 2467888554 4688 558997
No 18
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.14 E-value=0.27 Score=51.02 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=25.5
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.||||||..-.....|.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5789999995433333588999654 4687 788999
No 19
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.27 E-value=0.076 Score=46.89 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=17.1
Q ss_pred CccccceeecCCCcEE-EeeccccCCCCCCCCce
Q 006589 557 PSWCDRILSYGKGMRL-LNYRRNEIKMSDHRPVT 589 (639)
Q Consensus 557 PAWCDRIL~~g~~i~~-l~Y~s~e~~~SDHrPV~ 589 (639)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4448999987543222 11122467889999985
No 20
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=94.17 E-value=0.12 Score=54.69 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=25.6
Q ss_pred EEEEEeecCCCCCCCccHHHHHHHHHH-HHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 426 LFCFVCAHLTSGEKDGDELKRNADVHE-IHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 426 s~cFVn~HLaage~~~d~~rRN~D~~e-Il~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
.|.+|++|+.+.. ..++...+.+ ++.... . . ..+-||++||||-
T Consensus 143 ~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa 187 (276)
T smart00476 143 EFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNA 187 (276)
T ss_pred cEEEEEecCChHH----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCC
Confidence 6999999999853 2234433232 222110 0 0 1244999999997
No 21
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=93.84 E-value=0.31 Score=53.36 Aligned_cols=198 Identities=19% Similarity=0.223 Sum_probs=109.7
Q ss_pred EEeeehhhheeeeeeeccccccccc-----eeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCC---CCccH
Q 006589 372 MVSKQMVGIFLTIWVRRSLRRHIQN-----VRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGE---KDGDE 443 (639)
Q Consensus 372 v~SkqMvGi~L~Vfvr~~l~~~I~~-----v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage---~~~d~ 443 (639)
..|.-| |-.|+||.|--+..-..+ -....+=.| -..|-||--...+.+.+..+.+.|+||-|-- ++.-.
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 455566 888999988766432221 112222233 4567799888889999999999999998752 22234
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc-CChHHHH--HHHhhhchHHHhhhhhhHHHHhcCC
Q 006589 444 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTR--ELISKKQWSKLAESDQLLRELRKGR 520 (639)
Q Consensus 444 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~-l~~~~v~--~lI~~~~~~~LL~~DQL~~e~~~g~ 520 (639)
-.|-.+.-++-+-++- +-...|.||..||||-+=. ++..-.. .++ ..|..|. -||....--++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~r~s 216 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSFRLS 216 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCcccccc
Confidence 6777777766542211 1123588999999997432 2221111 112 2344332 244322222222
Q ss_pred cccCcccCCcccCCCcccccCCCcccCC--CCC--CCCCCCccccceeecCCC--cEEEeec----c---ccCCCCCCCC
Q 006589 521 AFDGWSEGTLIFAPTYKYELNSEKYYGE--DPK--VGRRNPSWCDRILSYGKG--MRLLNYR----R---NEIKMSDHRP 587 (639)
Q Consensus 521 vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~--~~~--~kkR~PAWCDRIL~~g~~--i~~l~Y~----s---~e~~~SDHrP 587 (639)
-|++..||.-+ +.--+.|... .+. -++| .|.||+++.. ++...|. + .+..+|||--
T Consensus 217 ~~~~l~~g~tc-------d~~~N~y~~aqk~~ddp~~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~A 285 (422)
T KOG3873|consen 217 EDKELVEGNTC-------DSPLNCYTSAQKREDDPLGKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEA 285 (422)
T ss_pred hhhhhhcCCcc-------cCcchhhhHHHhCCCCcccee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhh
Confidence 34444555411 1111223210 000 1467 8999999753 2233332 2 2578999999
Q ss_pred ceeEEEEEE
Q 006589 588 VTATYMAEV 596 (639)
Q Consensus 588 V~A~F~v~V 596 (639)
+.|++.+.-
T Consensus 286 l~a~L~I~~ 294 (422)
T KOG3873|consen 286 LMATLKIFK 294 (422)
T ss_pred heeEEEeec
Confidence 999997754
No 22
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.90 E-value=0.043 Score=56.84 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.6
Q ss_pred EEEEEEcCeEEEEEeecCCCCCCCc-cHHHH---HHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 417 SVSMSIHQTLFCFVCAHLTSGEKDG-DELKR---NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 417 sVs~~l~~ts~cFVn~HLaage~~~-d~~rR---N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
.|...+. .|.++|+..+.+.... ....| ..++.+.++.+ . ....+||+||||=
T Consensus 91 ~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l--~------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 91 VITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKAL--E------------LKKPVIVCGDLNV 147 (250)
T ss_pred EEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhc--c------------cCCCEEEEccccC
Confidence 3444443 5899999999986432 12222 23444444432 1 1135999999994
No 23
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=91.00 E-value=0.044 Score=57.53 Aligned_cols=33 Identities=36% Similarity=0.769 Sum_probs=24.2
Q ss_pred EEeeeeCCCC-CCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGK-LPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~-~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.||||||. +.... +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~--~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK--LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH--HHHHHHHhCC-CE--EEEEec
Confidence 4679999994 32222 8999966555 86 899999
No 24
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=89.13 E-value=0.95 Score=48.08 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=43.0
Q ss_pred EEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006589 415 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 488 (639)
Q Consensus 415 aVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~ 488 (639)
-..+...|.+..+||.++||.+-.. ...+|.+++.+-+.+.+=- -...| .-.||+.||+|.|=.
T Consensus 194 L~I~Ev~v~G~Kl~l~tsHLEStr~--h~P~r~~qF~~~~~k~~Ea---Ie~lP-----nA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 194 LLIVEVNVSGNKLCLMTSHLESTRG--HAPERMNQFKMVLKKMQEA---IESLP-----NATVIFGGDTNLRDR 257 (349)
T ss_pred eEEEEEeecCceEEEEeccccCCCC--CChHHHHHHHHHHHHHHHH---HHhCC-----CceEEEcCcccchhh
Confidence 3456677888899999999999764 3467888887666543210 00113 235999999998643
No 25
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=84.62 E-value=1.6 Score=49.62 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=59.3
Q ss_pred eeeeeecccccccccee--EeEEEeecccccccccEEEEEEEEcCe---EEEEEeecCCCCCCCccHHHHHHHHHHHHHh
Q 006589 382 LTIWVRRSLRRHIQNVR--VSTVGVGVMGFIGNKGSVSVSMSIHQT---LFCFVCAHLTSGEKDGDELKRNADVHEIHRR 456 (639)
Q Consensus 382 L~Vfvr~~l~~~I~~v~--vs~VgtGi~G~lGNKGaVsVs~~l~~t---s~cFVn~HLaage~~~d~~rRN~D~~eIl~r 456 (639)
++|+-+..+-..+.+-. ..-.+.|++..-.=++.|+.+|++-+. .|+..|+||--+...++ .|.+++.-||+.
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHHH
Confidence 44455555444443332 334566666543336677777766655 89999999999887765 488888888875
Q ss_pred cC-CCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 457 TH-FRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 457 ~~-F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
+. |..... .|=.||++||||-
T Consensus 282 ~~~~~~~~~--------~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKSSK--------SHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhhcc--------cCCCeEEecCCCC
Confidence 42 211000 3446999999994
No 26
>PRK11756 exonuclease III; Provisional
Probab=79.92 E-value=0.48 Score=48.67 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.|.||||+|..-. -..|.+||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~-~~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRAR-PHQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHH-HHHHHHHHHhc-CCCE--EEEEec
Confidence 4679999994211 11367888544 4688 669998
No 27
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.07 E-value=1.3 Score=44.47 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=30.3
Q ss_pred eEEEEEeecCCCCCCCcc--HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006589 425 TLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 487 (639)
Q Consensus 425 ts~cFVn~HLaage~~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI 487 (639)
..+.++|+|++++...+. ...|.+.+..+.+.+. . .+.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~-~---------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE-K---------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH-H---------HHhcCCcEEEEeecccCC
Confidence 368899999988763222 2345555555443210 0 000123599999999644
No 28
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=70.69 E-value=1.5 Score=44.66 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=28.7
Q ss_pred EEEEEeecCCCCCCCc--cHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006589 426 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 487 (639)
Q Consensus 426 s~cFVn~HLaage~~~--d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI 487 (639)
.|.++|+|++++.... ....|.+-+..+.+.+. .....+ ..+|++||||-..
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~~~~--------~pvIi~GDfN~~~ 151 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLVDKD--------KPVLICGDMNIAP 151 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHHhcC--------CcEEEEeecccCC
Confidence 4889999999864322 22334444444443221 000011 3499999999644
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=66.27 E-value=14 Score=39.37 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=36.3
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 412 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 412 NKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
....+++++ .+ +.|.+.||.+...+ .|.+.+..|..- |.+ ..| +.-++++||||=
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 455666665 32 78999999998422 378888888764 320 111 234899999993
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=63.49 E-value=6.2 Score=42.01 Aligned_cols=43 Identities=30% Similarity=0.524 Sum_probs=26.6
Q ss_pred EEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeeeeecCCC
Q 006589 95 ICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIVPLTAG 139 (639)
Q Consensus 95 i~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyvlGfQEiV~Lna~ 139 (639)
..|||||+.|..-.++ .++..-|..++++|| |-|||+=.|.+.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEags~p~~ 71 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAGSLPSS 71 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecCCCccc
Confidence 4589999999644332 123333334568897 678999444433
No 31
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=63.40 E-value=1.9 Score=41.07 Aligned_cols=33 Identities=42% Similarity=0.678 Sum_probs=19.7
Q ss_pred eeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeee
Q 006589 98 GTWNVGGKLPPDD-----LDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 98 GTwNV~G~~p~~~-----~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
+||||.+..+..+ ..|.+||.... ||| |+|||+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~-~Di--i~LQEv 38 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELD-PDI--IALQEV 38 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT--SE--EEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcC-CCE--EEEecc
Confidence 5999999211110 01677775433 795 779999
No 32
>PRK05421 hypothetical protein; Provisional
Probab=61.15 E-value=4.7 Score=41.78 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=21.9
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 43 ~lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 43 RLRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred ceeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 356779999986433211222333 445565 789999
No 33
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=25.59 E-value=2.8e+02 Score=33.83 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=37.6
Q ss_pred eEEEEEeecCCCCCCCc------------cHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChH
Q 006589 425 TLFCFVCAHLTSGEKDG------------DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYE 492 (639)
Q Consensus 425 ts~cFVn~HLaage~~~------------d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~~ 492 (639)
..|..|.-||-+..... -+.+|.+....+..-+.= .|..-.|. .++++||||- .-.+
T Consensus 621 ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~-------~~~~~~d~-~~viLGD~N~---y~~e 689 (798)
T COG2374 621 EKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLAT-------NPTGKADA-DIVILGDFND---YAFE 689 (798)
T ss_pred cEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhh-------CcccccCC-CEEEEeccch---hhhc
Confidence 45888888998865431 146777776666542211 11111222 2888999995 4445
Q ss_pred HHHHHHhh
Q 006589 493 KTRELISK 500 (639)
Q Consensus 493 ~v~~lI~~ 500 (639)
++++.|+.
T Consensus 690 dpI~~l~~ 697 (798)
T COG2374 690 DPIQALEG 697 (798)
T ss_pred cHHHHHhh
Confidence 56666654
No 34
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=25.17 E-value=52 Score=29.51 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=27.9
Q ss_pred eeeeeeecCCCcccccCCCCchhhHHHHHHHHhcc
Q 006589 129 GLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNR 163 (639)
Q Consensus 129 GfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~ 163 (639)
+|+ |+--+..-+|.+++..-...|.++|+++|+.
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 777 6666666777888888888999999999986
No 35
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=22.43 E-value=14 Score=24.99 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=10.1
Q ss_pred HHHHHhhccCCCCC
Q 006589 19 VMRKWLNISTKDSD 32 (639)
Q Consensus 19 v~~Kwlni~~~~~d 32 (639)
|..|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 45699999776544
No 36
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.12 E-value=40 Score=37.93 Aligned_cols=16 Identities=44% Similarity=0.810 Sum_probs=13.0
Q ss_pred cCCcceEEEeCccCcc
Q 006589 471 ICDHERIIWLGDLNYR 486 (639)
Q Consensus 471 I~dhD~Ifw~GDLNYR 486 (639)
+...+.||+=||||||
T Consensus 349 L~~S~LvIFKGDLNYR 364 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYR 364 (434)
T ss_pred HhhCcEEEEeccccHH
Confidence 3346889999999995
No 37
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.28 E-value=45 Score=22.48 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=7.1
Q ss_pred EEEEeeee
Q 006589 94 RICVGTWN 101 (639)
Q Consensus 94 ri~vGTwN 101 (639)
+|+|||+|
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 69999987
Done!