Query 006589
Match_columns 639
No_of_seqs 367 out of 1200
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 1.1E-90 3.7E-95 725.2 32.9 304 87-601 2-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 4.5E-85 1.6E-89 683.9 30.9 227 368-597 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 5.1E-82 1.7E-86 668.6 34.9 317 73-607 10-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 1.5E-77 5.1E-82 636.7 31.9 228 368-600 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 1.2E-63 4.2E-68 511.4 23.1 205 368-596 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.8 6.2E-08 2.1E-12 92.4 14.9 66 407-485 96-161 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 98.7 7.9E-08 2.7E-12 91.9 11.5 67 410-486 103-169 (256)
8 3teb_A Endonuclease/exonucleas 98.7 8.1E-08 2.8E-12 93.2 11.1 62 410-487 120-181 (266)
9 1zwx_A SMCL, sphingomyelinase- 98.6 2.6E-07 9.1E-12 92.0 12.7 69 410-487 128-200 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.5 4.9E-07 1.7E-11 84.5 11.3 61 412-485 95-155 (250)
11 3l1w_A Uncharacterized protein 98.4 6.6E-07 2.3E-11 87.1 10.5 136 410-594 107-251 (257)
12 4gew_A 5'-tyrosyl-DNA phosphod 98.4 8.5E-07 2.9E-11 93.5 11.5 103 368-486 173-275 (362)
13 3g6s_A Putative endonuclease/e 98.4 1.2E-06 4E-11 86.0 11.1 139 411-594 114-260 (267)
14 3i41_A Beta-hemolysin; beta to 98.4 5.5E-07 1.9E-11 92.4 8.8 70 409-487 146-219 (317)
15 1ako_A Exonuclease III; AP-end 98.4 2E-06 6.8E-11 83.5 12.0 67 411-487 87-156 (268)
16 2ddr_A Sphingomyelin phosphodi 98.3 4.9E-06 1.7E-10 82.8 12.8 69 410-487 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.1 1.3E-05 4.4E-10 80.8 11.5 61 412-485 119-181 (298)
18 2jc4_A Exodeoxyribonuclease II 97.6 0.00023 7.8E-09 68.4 10.7 58 419-488 93-152 (256)
19 1vyb_A ORF2 contains A reverse 97.6 0.00053 1.8E-08 65.0 11.7 53 415-486 97-149 (238)
20 2o3h_A DNA-(apurinic or apyrim 97.5 0.00018 6.3E-09 71.0 7.5 34 560-593 249-284 (285)
21 1wdu_A TRAS1 ORF2P; four-layer 97.4 0.00051 1.7E-08 66.7 10.2 57 412-486 102-158 (245)
22 2j63_A AP-endonuclease; base e 97.2 0.002 6.8E-08 70.7 11.9 35 560-594 430-466 (467)
23 1hd7_A DNA-(apurinic or apyrim 97.1 0.00054 1.8E-08 69.8 6.6 51 425-486 163-214 (318)
24 2jc5_A Exodeoxyribonuclease; h 97.0 0.00028 9.7E-09 67.9 2.8 35 560-595 220-257 (259)
25 4b8c_D Glucose-repressible alc 96.9 0.00035 1.2E-08 80.0 2.6 74 423-501 545-619 (727)
26 2a40_B Deoxyribonuclease-1; WA 96.7 0.00094 3.2E-08 65.8 3.9 59 413-486 111-172 (260)
27 2voa_A AF_EXO, XTHA, exodeoxyr 96.6 0.0049 1.7E-07 59.4 8.5 34 560-593 217-256 (257)
28 3g91_A MTH0212, exodeoxyribonu 96.6 0.0035 1.2E-07 61.4 7.0 36 95-133 4-39 (265)
29 1sr4_B CDT B, cytolethal diste 95.8 0.042 1.4E-06 56.2 10.5 60 412-485 121-180 (261)
30 2ei9_A Non-LTR retrotransposon 95.6 0.057 1.9E-06 53.3 10.3 35 95-133 8-42 (240)
31 3ngq_A CCR4-NOT transcription 95.2 0.048 1.6E-06 58.6 8.9 74 424-502 194-270 (398)
32 4fva_A 5'-tyrosyl-DNA phosphod 90.6 0.044 1.5E-06 51.8 -0.3 39 92-133 11-53 (256)
33 4f1h_A Tyrosyl-DNA phosphodies 88.2 0.083 2.9E-06 48.7 -0.3 37 94-133 3-43 (250)
34 4gz1_A Tyrosyl-DNA phosphodies 85.4 0.18 6.2E-06 47.4 0.3 35 560-594 211-254 (256)
35 4gew_A 5'-tyrosyl-DNA phosphod 82.7 0.26 9E-06 51.6 0.2 40 91-133 116-159 (362)
36 2ei9_A Non-LTR retrotransposon 81.6 0.16 5.5E-06 50.0 -1.8 56 411-486 76-131 (240)
37 1ako_A Exonuclease III; AP-end 80.4 0.18 6E-06 48.5 -2.0 34 96-133 2-35 (268)
38 2jc5_A Exodeoxyribonuclease; h 80.3 0.19 6.6E-06 47.9 -1.8 36 95-133 2-37 (259)
39 3g91_A MTH0212, exodeoxyribonu 78.0 0.18 6E-06 49.1 -2.9 35 560-594 221-257 (265)
40 1vyb_A ORF2 contains A reverse 74.0 0.36 1.2E-05 45.3 -1.8 33 560-592 204-237 (238)
41 2o3h_A DNA-(apurinic or apyrim 72.7 0.34 1.2E-05 47.4 -2.4 37 94-133 28-64 (285)
42 2voa_A AF_EXO, XTHA, exodeoxyr 72.6 0.48 1.6E-05 45.3 -1.3 35 95-133 2-36 (257)
43 3g6s_A Putative endonuclease/e 70.6 1.7 5.7E-05 42.0 2.0 36 94-133 3-47 (267)
44 1hd7_A DNA-(apurinic or apyrim 70.2 0.42 1.4E-05 48.3 -2.4 37 94-133 61-97 (318)
45 1sr4_B CDT B, cytolethal diste 68.3 1.5 5.2E-05 44.7 1.2 39 96-136 6-48 (261)
46 2f1n_A CDT B, cytolethal diste 68.0 1.2 4.3E-05 45.5 0.5 59 412-485 130-188 (262)
47 2f1n_A CDT B, cytolethal diste 67.6 5.2 0.00018 40.9 4.9 38 94-133 15-56 (262)
48 3l1w_A Uncharacterized protein 67.5 0.9 3.1E-05 43.6 -0.7 35 96-133 2-44 (257)
49 3teb_A Endonuclease/exonucleas 67.2 1 3.5E-05 43.0 -0.3 34 559-593 227-265 (266)
50 2jc4_A Exodeoxyribonuclease II 66.3 0.53 1.8E-05 44.8 -2.6 34 96-133 2-35 (256)
51 2j63_A AP-endonuclease; base e 66.0 0.54 1.9E-05 51.4 -2.8 37 94-133 149-188 (467)
52 1wdu_A TRAS1 ORF2P; four-layer 62.8 0.64 2.2E-05 44.7 -2.7 35 95-133 20-54 (245)
53 3mpr_A Putative endonuclease/e 62.7 1 3.6E-05 44.8 -1.3 17 581-597 276-292 (298)
54 2ddr_A Sphingomyelin phosphodi 55.8 7.8 0.00027 37.9 3.7 15 580-594 291-305 (306)
55 1zwx_A SMCL, sphingomyelinase- 48.2 6.5 0.00022 38.4 1.7 15 580-594 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 35.5 5.1 0.00017 40.5 -1.4 37 94-133 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=1.1e-90 Score=725.24 Aligned_cols=304 Identities=34% Similarity=0.649 Sum_probs=279.6
Q ss_pred cceeeeEEEEEeeeeCCCCCCCCCCCcccccCC-CCCCCEEEEeeeeeeecCCCcccccCCCCchhhHHHHHHHHhcccC
Q 006589 87 YINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM-NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNRIR 165 (639)
Q Consensus 87 y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~-~~~~DIyvlGfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~~~ 165 (639)
||..+++|||||||||||+.|++ +|.+||.. ..+||||||||||+ +|++++++..+ +.....|+.+|.++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~~-~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFHD-TPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTCC-CHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhcccC-cchHHHHHHHHHHhcCC--
Confidence 89999999999999999998864 78999986 56899999999999 99999988654 55688999888877742
Q ss_pred CCCCccccCCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccccccccCC
Q 006589 166 HTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDM 245 (639)
Q Consensus 166 ~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (639)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhcccccCCCccchhhhhhhcccccCCCCcchhccccchhcccccccccCCCCCCCCccccccccccCCCccccccc
Q 006589 246 PAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPNSLKTVKS 325 (639)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~~~~~s~~~~~~ 325 (639)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehhhheeeeeeeccccccccceeEeEEEee
Q 006589 326 FKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVG 405 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtG 405 (639)
...|++|+|+|||||+|+||||+++.++|++|++++||||
T Consensus 76 ----------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG 115 (313)
T 3mtc_A 76 ----------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115 (313)
T ss_dssp ----------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECS
T ss_pred ----------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeeccc
Confidence 0158999999999999999999999999999999999999
Q ss_pred cccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 406 VMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 406 i~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
+||++||||||+|||.+++|+|||||||||||+++ .++||+|+.+|++++.|........|.+|.+||+|||||||||
T Consensus 116 ~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNy 193 (313)
T 3mtc_A 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNY 193 (313)
T ss_dssp GGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCC
T ss_pred ccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccc
Confidence 99999999999999999999999999999999864 6899999999999999975433344678999999999999999
Q ss_pred ccc-CChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccCCCCCCCCCCCcccccee
Q 006589 486 RIN-LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 564 (639)
Q Consensus 486 RI~-l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL 564 (639)
||+ ++.++++++|++++|+.||++|||++|+++|++|.||.|++|+|||||||+.|++.|++ ++|+|+||||||||
T Consensus 194 Ri~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydt---s~k~R~PsWcDRIL 270 (313)
T 3mtc_A 194 RIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT---SEKCRAPAWCDRIL 270 (313)
T ss_dssp CBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEE
T ss_pred cccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCccccc---ccCEecccccceEE
Confidence 996 89999999999999999999999999999999999999999999999999999999985 56899999999999
Q ss_pred ecCCCcEEEeeccc-cCCCCCCCCceeEEEEEEEecCh
Q 006589 565 SYGKGMRLLNYRRN-EIKMSDHRPVTATYMAEVEVFSP 601 (639)
Q Consensus 565 ~~g~~i~~l~Y~s~-e~~~SDHrPV~A~F~v~V~vi~~ 601 (639)
|++++++++.|.+. ++++||||||+|.|.++++|+.+
T Consensus 271 ~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 271 WKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp EEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred EecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 99999999999985 79999999999999999999865
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=4.5e-85 Score=683.86 Aligned_cols=227 Identities=32% Similarity=0.515 Sum_probs=195.5
Q ss_pred CeEEEEeeehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHH
Q 006589 368 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 447 (639)
Q Consensus 368 ~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN 447 (639)
.|++|+++|||||+|+||||+++.++|++|++++||||++|++||||||+|+|.+++|+||||||||+||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCccc
Q 006589 448 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSE 527 (639)
Q Consensus 448 ~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 527 (639)
+|+.+|++++.|.... ......+.+||||||||||||||+++.++++++|++++|+.||++|||++|+++|++|.||+|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999985321 111223467899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcccccCCC-cccCCC---CCCCCCCCccccceeecCC---CcEEEeecc-ccCCCCCCCCceeEEEEEEE
Q 006589 528 GTLIFAPTYKYELNSE-KYYGED---PKVGRRNPSWCDRILSYGK---GMRLLNYRR-NEIKMSDHRPVTATYMAEVE 597 (639)
Q Consensus 528 g~I~FpPTYKy~~~sd-~Y~~~~---~~~kkR~PAWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHrPV~A~F~v~V~ 597 (639)
++|+|||||||+.|++ .|+.+. .+.|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.+.|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 575432 2346899999999999974 588999997 48999999999999999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=5.1e-82 Score=668.55 Aligned_cols=317 Identities=34% Similarity=0.587 Sum_probs=280.0
Q ss_pred hHHHhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC--CCCCCEEEEeeeeeeecCCCcccccCCCCch
Q 006589 73 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM--NEPADIYVLGLQEIVPLTAGNIFGAEDSRPV 150 (639)
Q Consensus 73 ~~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~--~~~~DIyvlGfQEiV~Lna~~vl~~~d~~~~ 150 (639)
.+|++|..| |+..++++||||||||||+.|+ .||.+||.. ..+||||||||||||+|++++|++. |+.+.
T Consensus 10 ~~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~ 81 (347)
T 1i9z_A 10 HELRKRENE-----FSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKR 81 (347)
T ss_dssp HHHHHTGGG-----TEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHH
T ss_pred HHHHHHHHh-----cCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhH
Confidence 345656555 9999999999999999999874 579999986 3789999999999999999999976 56678
Q ss_pred hhHHHHHHHHhcccCCCCCccccCCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccc
Q 006589 151 SKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFT 230 (639)
Q Consensus 151 ~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (639)
..|+.+|+++|+...+
T Consensus 82 ~~w~~~i~~~L~~~~~---------------------------------------------------------------- 97 (347)
T 1i9z_A 82 REWESCVKRLLNGKCT---------------------------------------------------------------- 97 (347)
T ss_dssp HHHHHHHHHHHHHTCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhccc----------------------------------------------------------------
Confidence 8999999999987410
Q ss_pred cccccccccccccCCcchhhcccccCCCccchhhhhhhcccccCCCCcchhccccchhcccccccccCCCCCCCCccccc
Q 006589 231 NYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLT 310 (639)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~ 310 (639)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccccccccccCcccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeeehhhheeeeeeeccc
Q 006589 311 QKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSL 390 (639)
Q Consensus 311 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~SkqMvGi~L~Vfvr~~l 390 (639)
.+..|++|.++||+|++|+||+|.++
T Consensus 98 ------------------------------------------------------~~~~Y~~v~s~~l~g~~L~Vfvr~~~ 123 (347)
T 1i9z_A 98 ------------------------------------------------------SGPGYVQLRSGQLVGTALMIFCKESC 123 (347)
T ss_dssp ------------------------------------------------------SSCCEEEEEEEEETTEEEEEEEEGGG
T ss_pred ------------------------------------------------------CCCceeEEEEeeccceEEEEEEehHh
Confidence 02369999999999999999999999
Q ss_pred cccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Q 006589 391 RRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKS 470 (639)
Q Consensus 391 ~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~ 470 (639)
+++|++|++++|+||++|++||||+|+|+|.+++++||||||||+||+.+ ..+||+|+.+|++++.|.. +..
T Consensus 124 ~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~------~~~ 195 (347)
T 1i9z_A 124 LPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR------GRS 195 (347)
T ss_dssp GGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG------GCC
T ss_pred hhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc------ccc
Confidence 99999999999999999999999999999999999999999999999875 4679999999999998842 346
Q ss_pred cCCcceEEEeCccCccccCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCcccCCCcccccCCCcccCCCC
Q 006589 471 ICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDP 550 (639)
Q Consensus 471 I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~ 550 (639)
|.+||++||+|||||||+++.+.++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.+++.|++
T Consensus 196 i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~--- 272 (347)
T 1i9z_A 196 IFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT--- 272 (347)
T ss_dssp TTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC---
T ss_pred cccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccc---
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCccccceeecCCCcEEEeeccccCCCCCCCCceeEEEEEEEecChhhhhhh
Q 006589 551 KVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRA 607 (639)
Q Consensus 551 ~~kkR~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~V~vi~~~klqr~ 607 (639)
++++|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.++.
T Consensus 273 s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 273 SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 46899999999999998 899999999889999999999999999999998776553
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-77 Score=636.67 Aligned_cols=228 Identities=27% Similarity=0.474 Sum_probs=206.8
Q ss_pred CeEEEEeeehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHH
Q 006589 368 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 447 (639)
Q Consensus 368 ~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN 447 (639)
.|+++.+.||+|++|+||||.++.++|+++++++|+||++|++||||+|+|+|.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5888999999999999999999999999999999999999999999999999999999999999999999864 67999
Q ss_pred HHHHHHHHhcCCCCCCCCCC------CcccCCcceEEEeCccCccccCChHHHHHHHh---hhchHHHhhhhhhHHHHhc
Q 006589 448 ADVHEIHRRTHFRSHSEIGF------PKSICDHERIIWLGDLNYRINLPYEKTRELIS---KKQWSKLAESDQLLRELRK 518 (639)
Q Consensus 448 ~D~~eIl~r~~F~~~~~~~~------P~~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~---~~~~~~LL~~DQL~~e~~~ 518 (639)
+|+.+|++++.|+....... ...+.+||+|||+|||||||++++++++++|+ .++|+.||++|||+.++++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 99999999999963211111 12345799999999999999999999999996 4789999999999999999
Q ss_pred CCcccCcccCCcccCCCcccccCCCcccCCCCCCCCCCCccccceeecC---CCcEEEeeccc-cCCCCCCCCceeEEEE
Q 006589 519 GRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMA 594 (639)
Q Consensus 519 g~vF~gf~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHrPV~A~F~v 594 (639)
|++|.||+|++|+|||||||+.|++.|++ ++|+|+|||||||||++ .+++++.|.+. ++++||||||+|.|.+
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt---s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 320 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS---TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRV 320 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc---cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEE
Confidence 99999999999999999999999999985 56899999999999996 46999999985 7999999999999999
Q ss_pred EEEecC
Q 006589 595 EVEVFS 600 (639)
Q Consensus 595 ~V~vi~ 600 (639)
.|+...
T Consensus 321 ~v~~~~ 326 (357)
T 2xsw_A 321 KVRPGR 326 (357)
T ss_dssp ECCCCC
T ss_pred EEecCC
Confidence 997654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.2e-63 Score=511.39 Aligned_cols=205 Identities=22% Similarity=0.430 Sum_probs=184.9
Q ss_pred CeEEEEe--eehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHH
Q 006589 368 SYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 445 (639)
Q Consensus 368 ~Yv~v~S--kqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~r 445 (639)
.|++|.+ .+|+|++|+||+|.++.+.|+++.+ +|++|.+||||+|.++|.+++++||||||||++++.+ ..+
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 4666776 7999999999999999988888765 5778999999999999999999999999999999643 357
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCc
Q 006589 446 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 525 (639)
Q Consensus 446 RN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 525 (639)
|++|+..|++++.+ +.+|++|||+||||||++.+.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999876433 34688999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCcccCCCcccccCCCcccCCCCCCCCCCCccccceeecC---CCcEEEeeccc-cCCCCCCCCceeEEEEEE
Q 006589 526 SEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMAEV 596 (639)
Q Consensus 526 ~Eg~I~FpPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHrPV~A~F~v~V 596 (639)
.|++|+|+|||||+.+++.|+ .+|+|||||||||++ ..++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYD------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBC------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCcccc------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 999999999999999999997 369999999999996 47999999997 799999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.81 E-value=6.2e-08 Score=92.40 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=48.9
Q ss_pred ccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 407 MGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 407 ~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
.+....++.+.+.+.+.+..|.++|+||.++... ...|.+++..|++.+.-. .....+|++||||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~ 161 (256)
T 4gz1_A 96 PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQEA-----------PDSTTVIFAGDTNL 161 (256)
T ss_dssp TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTSEEEEEEECCC
T ss_pred CcccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhhc-----------cCcceEEEeCccCC
Confidence 3445667889999999999999999999987643 356778888887654210 11235999999996
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.69 E-value=7.9e-08 Score=91.90 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=45.3
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 410 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 410 lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
-+.++.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+.... .......+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~--------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH--------HHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh--------hccCCCcEEEeccCCCC
Confidence 3557788899999999999999999987543 3456666666654321100 00112459999999964
No 8
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.68 E-value=8.1e-08 Score=93.24 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=47.7
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006589 410 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 487 (639)
Q Consensus 410 lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI 487 (639)
+..+|++.+.+.+.+..|+++|+||.+..... ..|..++..|++.+. . ...+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~r~~q~~~l~~~~~-----~---------~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCET--EDMGKNIQTILNRTQ-----N---------SNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTT--CCHHHHHHHHHTSSC-----S---------CCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCCh--HHHHHHHHHHHHHHh-----c---------CCcEEEEeECCCCC
Confidence 34688999999999999999999999874322 358888888876421 0 35699999999854
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.61 E-value=2.6e-07 Score=92.04 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=49.4
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 410 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 410 lGNKGaVsVs~~l~~ts~cFVn~HLaage~~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
..++|++.+.+.+.+..|.++|+||.++... .....|..++..|.+.+.=. .. .....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~----~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-----NI----PKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----TC----CTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-----CC----CCCCeEEEEeeCCC
Confidence 4578999999999999999999999987532 13456888888877643210 00 12246999999997
Q ss_pred cc
Q 006589 486 RI 487 (639)
Q Consensus 486 RI 487 (639)
.-
T Consensus 199 ~~ 200 (301)
T 1zwx_A 199 NY 200 (301)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.52 E-value=4.9e-07 Score=84.48 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=44.6
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 412 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 412 NKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
..+.+.+.+.+.+..|.++++||.+.... ...|..++.+|++.+.=. .....+|++||||.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKEA-----------PEDAIVIFAGDTNL 155 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTEEEEEEEECCC
T ss_pred cceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHhc-----------CCCCCEEEEEecCC
Confidence 35567788888999999999999987543 456788888887754210 11235999999995
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.45 E-value=6.6e-07 Score=87.11 Aligned_cols=136 Identities=21% Similarity=0.134 Sum_probs=79.4
Q ss_pred cccccEEEEEEEEc--CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006589 410 IGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 487 (639)
Q Consensus 410 lGNKGaVsVs~~l~--~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI 487 (639)
...++++.+.+.+. +..|.++|+||.+.. ...|..++..|++.+.- .+.. +.+|++||||-
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~----------~~~~-~pvil~GDfN~-- 169 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD----------KIAQ-YPTLLMGDFNA-- 169 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH----------HHHH-SCEEEEEECCC--
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH----------HcCC-CCEEEEeeCCC--
Confidence 45788888999884 678999999999863 35788888888875420 0001 15999999996
Q ss_pred cCChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCC-cccCCCcccccCCCcccCCCCC-CCCCCCccccceee
Q 006589 488 NLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGT-LIFAPTYKYELNSEKYYGEDPK-VGRRNPSWCDRILS 565 (639)
Q Consensus 488 ~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~-I~FpPTYKy~~~sd~Y~~~~~~-~kkR~PAWCDRIL~ 565 (639)
.+...+..++..+ | ..-|.... ....+||.-..+. .+. ...| .|+||.
T Consensus 170 -~~~~~~~~~l~~~-l------------------~d~~~~~~~~~~~~t~~~~~~~------~~~~~~~r----iD~i~~ 219 (257)
T 3l1w_A 170 -ESGEEVHQLVQKK-F------------------QDSKNLATHYGPRGTFQNFTYT------KPWAELEE----IDYIYV 219 (257)
T ss_dssp -CTTSHHHHHHTTT-C------------------EEGGGTSEEESCSCCBCTTCTT------CCGGGCBC----CEEEEE
T ss_pred -CCCcHHHHHhhhh-c------------------cchhhhhcccCCCCcccCCccc------CCCCCCCc----eeEEEE
Confidence 3333333333221 0 01111110 0112233111000 000 0134 799999
Q ss_pred cCCCcEEEeecccc-----CCCCCCCCceeEEEE
Q 006589 566 YGKGMRLLNYRRNE-----IKMSDHRPVTATYMA 594 (639)
Q Consensus 566 ~g~~i~~l~Y~s~e-----~~~SDHrPV~A~F~v 594 (639)
.+++...+.... ...|||.||.+.|.+
T Consensus 220 --~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~ 251 (257)
T 3l1w_A 220 --KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp --ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred --CCcEEEEEEEeccCcCCcccCCcceEEEEEEE
Confidence 667777776432 368999999999865
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.43 E-value=8.5e-07 Score=93.49 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=61.9
Q ss_pred CeEEEEeeehhhheeeeeeeccccccccceeEeEEEeecccccccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHH
Q 006589 368 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 447 (639)
Q Consensus 368 ~Yv~v~SkqMvGi~L~Vfvr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN 447 (639)
.|......+-.+-.+.|++|+.+ ..+....+.. .+.....+++.+.+.+.+..|+++|+||.++.. ....|.
T Consensus 173 ~y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~~--~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~ 244 (362)
T 4gew_A 173 LYKIYYSNKGCQYYTAILVSKMF----DVEKHDVIHF--QNSGMYRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRC 244 (362)
T ss_dssp TEEEEESSTTSSSEEEEEEETTE----EEEEEEEEEC--TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHH
T ss_pred CceEEeCCCCCCceEEEEEeccC----ccccccccCC--CCCcccceEEEEEEEECCEEEEEEEecCCcccc--chhHHH
Confidence 35445555555556677777532 2222222221 122234678888999999999999999998754 245788
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 448 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 448 ~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
.++..++..+.-.. .......||++||||-+
T Consensus 245 ~Q~~~l~~~~~~~~--------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 245 AQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp HHHHHHHHHHHHHH--------HHCTTCEEEEEEECCCC
T ss_pred HHHHHHHHHhHhhh--------hcCCCCCeEEeecCCCC
Confidence 88877765422100 00112359999999964
No 13
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.40 E-value=1.2e-06 Score=86.00 Aligned_cols=139 Identities=16% Similarity=0.110 Sum_probs=78.4
Q ss_pred ccccEEEEEEEE--cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006589 411 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 488 (639)
Q Consensus 411 GNKGaVsVs~~l--~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~ 488 (639)
.+++++.+.+.. .+..|+++|+||.+.. ...|..++..|++.+.= +.....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~--- 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV--- 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS---
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC---
Confidence 467888888885 5789999999998753 35787877777664321 001234999999996
Q ss_pred CChHHHHHHHhhhchHHHhhhhhhHHHHhcCCcccCcccCCccc--CCCcccccCCCcccCCCCCCCCCCCccccceeec
Q 006589 489 LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIF--APTYKYELNSEKYYGEDPKVGRRNPSWCDRILSY 566 (639)
Q Consensus 489 l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F--pPTYKy~~~sd~Y~~~~~~~kkR~PAWCDRIL~~ 566 (639)
.+.+.+...+..... ..-..|.+....+ .+||........ ....| .|+||..
T Consensus 176 ~~~~~~~~~l~~~~~----------------~l~d~~~~~~~~~~~~~T~~~~~~~~~------~~~~r----iD~I~~s 229 (267)
T 3g6s_A 176 TDASDAYETITTNEF----------------VMKDAYKTAARVTGVDYTFHDFARIPA------EDCEK----IDFIFVT 229 (267)
T ss_dssp CTTSHHHHHHHSSSS----------------CCEEHHHHCSEEEECSCSBCTTTTSCG------GGCCC----CEEEEEC
T ss_pred CCCCHHHHHhhcCCc----------------chhhhHhhhccccCCCCCEeCCCCCCC------CCCCc----EeEEEeC
Confidence 333333333322110 0011122211111 234422111000 01234 8999997
Q ss_pred CCCcEEEeeccccC----CCCCCCCceeEEEE
Q 006589 567 GKGMRLLNYRRNEI----KMSDHRPVTATYMA 594 (639)
Q Consensus 567 g~~i~~l~Y~s~e~----~~SDHrPV~A~F~v 594 (639)
+ +++...+..... ..|||.||.|....
T Consensus 230 ~-~~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 230 P-QVLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp T-TSEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred C-CceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 5 377777765432 57999999997654
No 14
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.39 E-value=5.5e-07 Score=92.35 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=51.0
Q ss_pred ccccccEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccC
Q 006589 409 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 484 (639)
Q Consensus 409 ~lGNKGaVsVs~~l~~ts~cFVn~HLaage~~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLN 484 (639)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----NIP----KDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----ccC----CCCeEEEEeECC
Confidence 36789999999999999999999999986531 23578889988887643210 001 123599999999
Q ss_pred ccc
Q 006589 485 YRI 487 (639)
Q Consensus 485 YRI 487 (639)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 743
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.38 E-value=2e-06 Score=83.48 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=45.8
Q ss_pred ccccEEEEEEEEcCeEEEEEeecCCCCCCCc---cHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006589 411 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 487 (639)
Q Consensus 411 GNKGaVsVs~~l~~ts~cFVn~HLaage~~~---d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI 487 (639)
.+++++.+.+.+.+..|+++|+||.++.... ....|...+..|.+.+.-. ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCCC
Confidence 4678999999999899999999999876432 1234666666665432100 00124599999999643
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.29 E-value=4.9e-06 Score=82.85 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=48.0
Q ss_pred cccccEEEEEEEEcCeEEEEEeecCCCCCCC----ccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 410 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 410 lGNKGaVsVs~~l~~ts~cFVn~HLaage~~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----NIP----NNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----cCC----CCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13457888888876543210 001 1235999999998
Q ss_pred cc
Q 006589 486 RI 487 (639)
Q Consensus 486 RI 487 (639)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1.3e-05 Score=80.75 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=41.4
Q ss_pred cccEEEEEEEE--cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 412 NKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 412 NKGaVsVs~~l--~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
+++++.+.|.. .+..|+++|+||.+.. ...|.+++..|++.+.-. .. . ....+|++||||-
T Consensus 119 ~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~--~~---~----~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 119 PRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKEL--GR---G----KNLPAILTGDFNV 181 (298)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHT--TT---T----SCCCEEEEEECSS
T ss_pred CceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHH--hc---C----CCCcEEEEEeCCC
Confidence 56677777773 5778999999998642 357888888877653210 00 0 1234999999996
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.64 E-value=0.00023 Score=68.43 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=33.3
Q ss_pred EEEEcCeEEEEEeecCCCCCCCcc--HHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006589 419 SMSIHQTLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 488 (639)
Q Consensus 419 s~~l~~ts~cFVn~HLaage~~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~ 488 (639)
.+.+. .|.++|+||+++...+. ...|.+.+..|.+.+.- . +.....+|++||||-...
T Consensus 93 ~~~~~--~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 93 AATVS--GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp EEEET--TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred EEEeC--CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 34453 79999999998765322 23355555555432210 0 001234999999997543
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.56 E-value=0.00053 Score=64.97 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=35.2
Q ss_pred EEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 415 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 415 aVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
.+.+.+.+.+..|.++|+|++++.. . | -+.++++.+.-. + ...+|++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~~-------~-----~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQRD-------L-----DSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTTT-------C-----CTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHhc-------c-----CCCEEEEccCCCC
Confidence 5677788888999999999998642 1 2 233454442210 0 1349999999974
No 20
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.46 E-value=0.00018 Score=71.00 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=23.2
Q ss_pred ccceeecCCCc-EEEeeccc-cCCCCCCCCceeEEE
Q 006589 560 CDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYM 593 (639)
Q Consensus 560 CDRIL~~g~~i-~~l~Y~s~-e~~~SDHrPV~A~F~ 593 (639)
.|+||....-. ++..+... +...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999875321 13444433 456899999999885
No 21
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.45 E-value=0.00051 Score=66.70 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=40.8
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 412 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 412 NKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
..|.+.+.+.+.+..|.++|+|++.+.. ...+.+.+..+++.+ . ...+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~--~-------------~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM--G-------------PKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT--C-------------SSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh--C-------------CCcEEEEeccccC
Confidence 4677888888888889999999998753 234555666666532 1 1249999999963
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.15 E-value=0.002 Score=70.66 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=23.4
Q ss_pred ccceeecCCCc-EEEeecc-ccCCCCCCCCceeEEEE
Q 006589 560 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 594 (639)
Q Consensus 560 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHrPV~A~F~v 594 (639)
.|+||....-. ++..+.- .+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 89999865321 2333332 34679999999998853
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.12 E-value=0.00054 Score=69.75 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=30.9
Q ss_pred eEEEEEeecCCCCCCCc-cHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 425 TLFCFVCAHLTSGEKDG-DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 425 ts~cFVn~HLaage~~~-d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
..|.++|+||+++.... ....|.+.+..|...+.- +.....+|++||||-.
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~ 214 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVA 214 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCC
Confidence 36899999998765321 223466666666543210 0011359999999964
No 24
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=96.98 E-value=0.00028 Score=67.88 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=24.8
Q ss_pred ccceeecCCCcE--EEeeccc-cCCCCCCCCceeEEEEE
Q 006589 560 CDRILSYGKGMR--LLNYRRN-EIKMSDHRPVTATYMAE 595 (639)
Q Consensus 560 CDRIL~~g~~i~--~l~Y~s~-e~~~SDHrPV~A~F~v~ 595 (639)
.|+||.... +. ...+... +...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~-~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPE-LAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHH-HHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHH-HHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 899998742 22 3444433 57899999999998653
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.85 E-value=0.00035 Score=79.95 Aligned_cols=74 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred cCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhh
Q 006589 423 HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKK 501 (639)
Q Consensus 423 ~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~~ 501 (639)
.+..|+++|+||.+....+ ..|..+...|++.+. +........+..-.....||++||||- .+.+.+.+++..+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 3678999999999864322 246666666655432 100000000000001235999999996 4455555555443
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.67 E-value=0.00094 Score=65.76 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=34.9
Q ss_pred ccEEEEEEEEc---CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 413 KGSVSVSMSIH---QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 413 KGaVsVs~~l~---~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
.+.+.+.|... +..|.+||+||.+... .++.+.+.+++..+. . ......+|++||||-.
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~-~----------~~~~~~vil~GDfN~~ 172 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ-Q----------KWHLNDVMLMGDFNAD 172 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH-H----------HHCCCCEEEEEECCCS
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH-H----------hCCCCCEEEEecCCCC
Confidence 55677777765 5689999999997532 122233333332210 0 0011349999999974
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.63 E-value=0.0049 Score=59.36 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=21.6
Q ss_pred ccceeecCCCc-EEEeeccc-----cCCCCCCCCceeEEE
Q 006589 560 CDRILSYGKGM-RLLNYRRN-----EIKMSDHRPVTATYM 593 (639)
Q Consensus 560 CDRIL~~g~~i-~~l~Y~s~-----e~~~SDHrPV~A~F~ 593 (639)
.|+||..+.-. ++..+... ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 89999864211 13333221 246899999999875
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.56 E-value=0.0035 Score=61.39 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=24.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 95 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 95 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999432111147788854 35686 788998
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.78 E-value=0.042 Score=56.21 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=37.6
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 412 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 412 NKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
..|.+.|+ +.+ +.|++.||.+.... .|.+.+..|... |.... ..|. ..|...|++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCCC
Confidence 67787774 666 99999999998522 356667777653 21000 0010 02346999999994
No 30
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=95.56 E-value=0.057 Score=53.31 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.1
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 95 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 95 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
+.|.||||||.....+. |.+||.. ..||| |++||+
T Consensus 8 mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 67889999995322222 7889854 45687 778997
No 31
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.18 E-value=0.048 Score=58.65 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=44.9
Q ss_pred CeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcC-CCCCCCCCCCcc--cCCcceEEEeCccCccccCChHHHHHHHhh
Q 006589 424 QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKS--ICDHERIIWLGDLNYRINLPYEKTRELISK 500 (639)
Q Consensus 424 ~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~--I~dhD~Ifw~GDLNYRI~l~~~~v~~lI~~ 500 (639)
+..|+++|+||..+... ...|..++..|++.+. |........+.. -...-.||++||||- .+.+.+.+++..
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhc
Confidence 46799999999997543 3468888888876532 210000000000 001124999999997 777888888876
Q ss_pred hc
Q 006589 501 KQ 502 (639)
Q Consensus 501 ~~ 502 (639)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 53
No 32
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=90.60 E-value=0.044 Score=51.82 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=24.7
Q ss_pred eEEEEEeeeeCCCCCCCCCC----CcccccCCCCCCCEEEEeeeee
Q 006589 92 EVRICVGTWNVGGKLPPDDL----DIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 92 ~~ri~vGTwNV~G~~p~~~~----dL~~WL~~~~~~DIyvlGfQEi 133 (639)
...+.|-||||+|..+.... -|.+||. ...||| |+|||+
T Consensus 11 ~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~-~~~pDI--i~LQEv 53 (256)
T 4fva_A 11 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK-NVNPDI--LFLQEV 53 (256)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred CCEEEEEEEecCCCCCcCHHHHHHHHHHHHH-HcCCCE--EEEEec
Confidence 34688899999985322110 1445553 345795 899998
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=88.25 E-value=0.083 Score=48.72 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=23.1
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 36678999998532210 124455533 35795 889998
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=85.36 E-value=0.18 Score=47.40 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=23.7
Q ss_pred ccceeecCCC--cEEEeec-----c--ccCCCCCCCCceeEEEE
Q 006589 560 CDRILSYGKG--MRLLNYR-----R--NEIKMSDHRPVTATYMA 594 (639)
Q Consensus 560 CDRIL~~g~~--i~~l~Y~-----s--~e~~~SDHrPV~A~F~v 594 (639)
.|+||+++.. +....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 7999998642 3333332 1 12446999999999975
No 35
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=82.65 E-value=0.26 Score=51.58 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=25.7
Q ss_pred eeEEEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006589 91 KEVRICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 91 ~~~ri~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
...++.|-||||+|...... .-|.+||.. ..||| |+|||+
T Consensus 116 ~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 34567788999999532110 024567743 45696 899998
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=81.62 E-value=0.16 Score=50.01 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=35.9
Q ss_pred ccccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006589 411 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 486 (639)
Q Consensus 411 GNKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNYR 486 (639)
...|++.|.+.+ ..|.++|+|++.+... ..+.+.+..++... . . ..+|++||||--
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~--~-----~--------~~~Ii~GDfN~~ 131 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRL--R-----G--------ARVVICADTNAH 131 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHT--T-----T--------SCEEEEEECCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhc--C-----C--------CcEEEEEecccc
Confidence 346777766543 5689999999998642 23444555554321 0 0 249999999964
No 37
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=80.36 E-value=0.18 Score=48.45 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.|.||||+|... .-..|.+||.. ..||| |||||+
T Consensus 2 rv~t~Nv~~~~~-~~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 2 KFVSFNINGLRA-RPHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp EEEEEECSCGGG-CHHHHHHHHHH-HCCSE--EEEECC
T ss_pred EEEEEehhHHHH-HHHHHHHHHHH-cCCCE--EEEEec
Confidence 578999998532 11135556533 45785 899998
No 38
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=80.26 E-value=0.19 Score=47.92 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.2
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 95 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 95 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5688999998432211146777743 45797 788999
No 39
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=78.02 E-value=0.18 Score=49.14 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=23.1
Q ss_pred ccceeecCCCc-EEEeecc-ccCCCCCCCCceeEEEE
Q 006589 560 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 594 (639)
Q Consensus 560 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHrPV~A~F~v 594 (639)
.|+||....-. +.....- .+...|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 89999865322 2223322 24578999999998864
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=74.03 E-value=0.36 Score=45.27 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=22.2
Q ss_pred ccceeecCCCc-EEEeeccccCCCCCCCCceeEE
Q 006589 560 CDRILSYGKGM-RLLNYRRNEIKMSDHRPVTATY 592 (639)
Q Consensus 560 CDRIL~~g~~i-~~l~Y~s~e~~~SDHrPV~A~F 592 (639)
.|+||..+.-. +...+.......|||.||.+.|
T Consensus 204 ID~i~~s~~~~~~~~~~~v~~~~~SDH~pv~~~l 237 (238)
T 1vyb_A 204 IDHIVGSKALLSKCKRTEIITNYLSDHSAIKLEL 237 (238)
T ss_dssp CEEEEEEGGGGGGEEEEEEECCSSSSSCEEEEEE
T ss_pred eEEEEeCHHHHhhhhhceeecCCCCCcccEEEEe
Confidence 89999875321 2333333345789999999876
No 41
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=72.68 E-value=0.34 Score=47.44 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 46788999998432111136677643 45685 889999
No 42
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=72.60 E-value=0.48 Score=45.28 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=22.5
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 95 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 95 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
+.|.||||+|..... ..|.+||. ...||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~-~~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLK-ENKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHH-HHCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHh-hcCCCE--EEEEEe
Confidence 567899999853221 13455553 335786 889999
No 43
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=70.58 E-value=1.7 Score=42.02 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=23.0
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~~dL~~WL~---------~~~~~DIyvlGfQEi 133 (639)
.+-|.||||.+..+..+ -..|-. ....||| |||||+
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv 47 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEV 47 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESB
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 46789999998654322 123322 1345786 889999
No 44
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=70.18 E-value=0.42 Score=48.27 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=24.7
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 46788999998532111236777743 45687 889999
No 45
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=68.31 E-value=1.5 Score=44.73 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=27.3
Q ss_pred EEeeeeCCCCCCCC----CCCcccccCCCCCCCEEEEeeeeeeec
Q 006589 96 CVGTWNVGGKLPPD----DLDIDDWIDMNEPADIYVLGLQEIVPL 136 (639)
Q Consensus 96 ~vGTwNV~G~~p~~----~~dL~~WL~~~~~~DIyvlGfQEiV~L 136 (639)
.|+|||+-|....+ +..+..||..+..||| |.+||+--+
T Consensus 6 kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 6 KVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp CEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred EEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 48999999954333 1146778866678898 667999443
No 46
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=67.95 E-value=1.2 Score=45.46 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred cccEEEEEEEEcCeEEEEEeecCCCCCCCccHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006589 412 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 485 (639)
Q Consensus 412 NKGaVsVs~~l~~ts~cFVn~HLaage~~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~Ifw~GDLNY 485 (639)
....++|++ . .+.|.+.|+.+...+ .|.+.+..|... |.. .|..+-..--.+++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 667777776 2 488999999998432 378889988865 321 1110000024899999996
No 47
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=67.58 E-value=5.2 Score=40.93 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=25.6
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.|+|||+-|..++++ .+|..-+....++|| |++||+
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 46689999999755332 245553333456898 778999
No 48
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=67.52 E-value=0.9 Score=43.57 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=21.6
Q ss_pred EEeeeeCCCCCCCCCC--------CcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDL--------DIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~--------dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.|.||||.+..+.... -|.++|. ...||| |||||+
T Consensus 2 rv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 44 (257)
T 3l1w_A 2 KIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEV 44 (257)
T ss_dssp EEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred EEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 5889999986543211 0223332 235787 889999
No 49
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=67.21 E-value=1 Score=43.00 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=24.1
Q ss_pred cccceeecCCCcEEEeeccc-----cCCCCCCCCceeEEE
Q 006589 559 WCDRILSYGKGMRLLNYRRN-----EIKMSDHRPVTATYM 593 (639)
Q Consensus 559 WCDRIL~~g~~i~~l~Y~s~-----e~~~SDHrPV~A~F~ 593 (639)
-.|+||..+ ++.+..+... ....|||.||.+.|.
T Consensus 227 riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 227 RLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp CCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred eeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 389999865 4555555432 256799999999885
No 50
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=66.31 E-value=0.53 Score=44.75 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 96 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 96 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
-|.||||+|-.... ..|.+||. ...||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~-~~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLA-DNPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHH-SSCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHH-hcCCCE--EEEEee
Confidence 47899999842111 13555664 345787 788999
No 51
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=66.00 E-value=0.54 Score=51.43 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=24.4
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPD--D-LDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~--~-~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778899999942111 0 236777744 34686 889998
No 52
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=62.79 E-value=0.64 Score=44.68 Aligned_cols=35 Identities=20% Similarity=-0.033 Sum_probs=24.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006589 95 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 133 (639)
Q Consensus 95 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyvlGfQEi 133 (639)
+.|.||||+|..... ..|.+|+.. ..||| |++||+
T Consensus 20 lri~s~Nv~~~~~~~-~~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 20 YRVLQANLQRKKLAT-AELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp EEEEEEECTTCHHHH-HHHHHHHHH-HTCSE--EEEESC
T ss_pred eeeeeeeccccHHHH-HHHHHHHhh-cCCCE--EEEEcc
Confidence 678899999852211 146677744 45686 889998
No 53
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=62.74 E-value=1 Score=44.76 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=13.4
Q ss_pred CCCCCCCceeEEEEEEE
Q 006589 581 KMSDHRPVTATYMAEVE 597 (639)
Q Consensus 581 ~~SDHrPV~A~F~v~V~ 597 (639)
..|||.||.+....+++
T Consensus 276 ~~SDH~PV~v~~~~~~~ 292 (298)
T 3mpr_A 276 TPSDHFPVKVELVFDLE 292 (298)
T ss_dssp CSSSBCCEEEEEEECSS
T ss_pred cCCCCCcEEEEEecchh
Confidence 56999999998765543
No 54
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=55.76 E-value=7.8 Score=37.86 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=13.1
Q ss_pred CCCCCCCCceeEEEE
Q 006589 580 IKMSDHRPVTATYMA 594 (639)
Q Consensus 580 ~~~SDHrPV~A~F~v 594 (639)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999865
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=48.16 E-value=6.5 Score=38.41 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCCCCCCceeEEEE
Q 006589 580 IKMSDHRPVTATYMA 594 (639)
Q Consensus 580 ~~~SDHrPV~A~F~v 594 (639)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 578999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=35.45 E-value=5.1 Score=40.47 Aligned_cols=37 Identities=11% Similarity=-0.132 Sum_probs=21.8
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc------C---CCCCCCEEEEeeeee
Q 006589 94 RICVGTWNVGGKLPPDDLDIDDWI------D---MNEPADIYVLGLQEI 133 (639)
Q Consensus 94 ri~vGTwNV~G~~p~~~~dL~~WL------~---~~~~~DIyvlGfQEi 133 (639)
.|.|.||||.+-.+..+.+ ..|- . ....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5678899999852221111 0221 1 2356886 899999
Done!