Query 006592
Match_columns 639
No_of_seqs 293 out of 664
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 11:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 8.6E-69 1.9E-73 550.4 11.5 283 151-451 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 5.3E-47 1.1E-51 380.2 15.2 191 164-428 10-230 (253)
3 cd01807 GDX_N ubiquitin-like d 99.6 2.1E-15 4.5E-20 126.2 8.2 67 40-106 1-71 (74)
4 KOG0005 Ubiquitin-like protein 99.6 1.5E-15 3.4E-20 124.2 4.4 66 40-105 1-70 (70)
5 cd01802 AN1_N ubiquitin-like d 99.6 7.6E-15 1.6E-19 131.7 8.8 73 33-105 21-97 (103)
6 cd01793 Fubi Fubi ubiquitin-li 99.6 6.7E-15 1.5E-19 123.2 7.9 64 40-105 1-68 (74)
7 cd01797 NIRF_N amino-terminal 99.6 8E-15 1.7E-19 125.2 7.8 66 40-105 1-72 (78)
8 PTZ00044 ubiquitin; Provisiona 99.5 1.5E-14 3.2E-19 120.7 8.2 67 40-106 1-71 (76)
9 cd01798 parkin_N amino-termina 99.5 1E-14 2.2E-19 120.6 7.2 65 42-106 1-69 (70)
10 cd01810 ISG15_repeat2 ISG15 ub 99.5 3.6E-14 7.8E-19 118.8 7.4 65 42-106 1-69 (74)
11 KOG0003 Ubiquitin/60s ribosoma 99.5 6.6E-15 1.4E-19 132.8 1.1 66 40-105 1-70 (128)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.5 8.6E-14 1.9E-18 117.7 7.8 66 40-105 2-71 (73)
13 cd01794 DC_UbP_C dendritic cel 99.5 9.5E-14 2.1E-18 116.3 7.1 63 43-105 2-68 (70)
14 cd01806 Nedd8 Nebb8-like ubiq 99.5 2.3E-13 5E-18 112.5 8.7 67 40-106 1-71 (76)
15 cd01805 RAD23_N Ubiquitin-like 99.5 2.3E-13 5E-18 113.6 8.7 67 40-106 1-73 (77)
16 KOG0004 Ubiquitin/40S ribosoma 99.5 2.5E-14 5.4E-19 136.1 3.1 66 40-105 1-70 (156)
17 cd01803 Ubiquitin Ubiquitin. U 99.5 2.1E-13 4.6E-18 112.7 8.1 67 40-106 1-71 (76)
18 cd01809 Scythe_N Ubiquitin-lik 99.4 2.7E-13 5.9E-18 111.0 8.4 67 40-106 1-71 (72)
19 cd01804 midnolin_N Ubiquitin-l 99.4 3.3E-13 7.1E-18 114.8 7.8 68 39-106 1-71 (78)
20 cd01796 DDI1_N DNA damage indu 99.4 4E-13 8.7E-18 112.3 7.2 64 42-105 1-70 (71)
21 cd01808 hPLIC_N Ubiquitin-like 99.4 1E-12 2.2E-17 109.1 7.8 65 40-105 1-69 (71)
22 cd01792 ISG15_repeat1 ISG15 ub 99.4 9.4E-13 2E-17 112.1 7.0 67 40-106 3-75 (80)
23 cd01790 Herp_N Homocysteine-re 99.3 6.9E-12 1.5E-16 108.3 7.6 67 40-106 2-78 (79)
24 PF00240 ubiquitin: Ubiquitin 99.3 1.5E-11 3.3E-16 100.5 7.4 62 45-106 1-66 (69)
25 cd01763 Sumo Small ubiquitin-r 99.2 3.8E-11 8.1E-16 104.2 9.4 73 33-105 5-81 (87)
26 cd01812 BAG1_N Ubiquitin-like 99.2 2.1E-11 4.5E-16 100.0 7.4 65 40-105 1-69 (71)
27 cd01800 SF3a120_C Ubiquitin-li 99.1 7.4E-11 1.6E-15 99.6 6.8 59 47-105 5-67 (76)
28 TIGR00601 rad23 UV excision re 99.1 4.1E-10 8.9E-15 121.5 9.7 67 40-106 1-74 (378)
29 smart00213 UBQ Ubiquitin homol 99.0 6.1E-10 1.3E-14 88.3 7.5 60 40-100 1-64 (64)
30 PF00454 PI3_PI4_kinase: Phosp 99.0 1.7E-12 3.7E-17 128.6 -9.3 156 217-389 28-204 (235)
31 cd01815 BMSC_UbP_N Ubiquitin-l 99.0 3.9E-10 8.6E-15 96.6 4.6 49 58-106 19-74 (75)
32 cd01799 Hoil1_N Ubiquitin-like 99.0 8.3E-10 1.8E-14 94.0 6.4 60 44-104 7-72 (75)
33 cd01813 UBP_N UBP ubiquitin pr 99.0 1.3E-09 2.8E-14 92.4 7.4 65 40-105 1-72 (74)
34 KOG0010 Ubiquitin-like protein 98.9 1.8E-09 3.8E-14 118.5 7.3 78 38-116 14-95 (493)
35 cd01769 UBL Ubiquitin-like dom 98.7 2.6E-08 5.6E-13 80.0 7.1 62 44-105 2-67 (69)
36 KOG0001 Ubiquitin and ubiquiti 98.7 6.8E-08 1.5E-12 76.4 8.2 66 41-106 1-70 (75)
37 PF11976 Rad60-SLD: Ubiquitin- 98.6 1.3E-07 2.8E-12 78.2 8.2 66 40-105 1-71 (72)
38 cd01814 NTGP5 Ubiquitin-like N 98.6 8.1E-08 1.7E-12 88.2 6.1 69 38-106 3-90 (113)
39 cd01795 USP48_C USP ubiquitin- 98.4 5.8E-07 1.3E-11 81.1 6.1 56 50-105 15-75 (107)
40 KOG0011 Nucleotide excision re 98.3 9.5E-07 2.1E-11 93.5 7.3 65 40-104 1-71 (340)
41 PLN02560 enoyl-CoA reductase 98.1 5.8E-06 1.2E-10 87.6 7.9 66 40-105 1-81 (308)
42 KOG4248 Ubiquitin-like protein 98.1 3.1E-06 6.7E-11 99.6 6.0 65 41-106 4-72 (1143)
43 cd01789 Alp11_N Ubiquitin-like 98.1 1.3E-05 2.9E-10 69.5 8.3 66 41-106 3-80 (84)
44 KOG3829 Uncharacterized conser 97.8 0.0001 2.2E-09 80.3 9.3 173 148-346 151-389 (486)
45 cd00196 UBQ Ubiquitin-like pro 97.6 0.00026 5.7E-09 52.2 7.2 61 45-105 3-67 (69)
46 PF14560 Ubiquitin_2: Ubiquiti 97.3 0.00083 1.8E-08 58.2 7.7 66 41-106 3-82 (87)
47 cd01788 ElonginB Ubiquitin-lik 97.1 0.0013 2.8E-08 61.1 7.1 65 42-106 3-80 (119)
48 cd01801 Tsc13_N Ubiquitin-like 97.1 0.0015 3.2E-08 55.5 6.4 64 41-104 2-74 (77)
49 PF13881 Rad60-SLD_2: Ubiquiti 97.0 0.0042 9.1E-08 57.2 9.3 66 40-105 3-86 (111)
50 KOG0006 E3 ubiquitin-protein l 96.4 0.01 2.2E-07 63.4 8.0 67 40-106 1-74 (446)
51 PF07804 HipA_C: HipA-like C-t 96.3 0.0014 3E-08 55.9 0.8 38 296-338 40-77 (79)
52 PF11543 UN_NPL4: Nuclear pore 96.1 0.0079 1.7E-07 52.3 4.4 67 38-105 3-78 (80)
53 cd01811 OASL_repeat1 2'-5' oli 95.4 0.058 1.2E-06 47.1 6.9 65 40-105 1-74 (80)
54 KOG1872 Ubiquitin-specific pro 95.1 0.053 1.2E-06 60.6 7.5 64 41-105 5-73 (473)
55 PF06702 DUF1193: Protein of u 94.3 0.034 7.3E-07 57.0 3.2 108 296-427 89-198 (221)
56 cd05168 PI4Kc_III_beta Phospho 92.5 0.15 3.2E-06 54.3 4.6 41 297-345 131-171 (293)
57 KOG1769 Ubiquitin-like protein 92.4 0.73 1.6E-05 42.2 8.1 70 37-106 18-91 (99)
58 cd00893 PI4Kc_III Phosphoinosi 92.1 0.25 5.5E-06 52.5 5.7 41 297-345 129-169 (289)
59 PF11470 TUG-UBL1: GLUT4 regul 91.4 0.73 1.6E-05 39.0 6.6 59 46-104 3-65 (65)
60 PF13019 Telomere_Sde2: Telome 91.0 0.49 1.1E-05 46.7 5.9 51 40-90 1-57 (162)
61 cd00895 PI3Kc_C2_beta Phosphoi 90.8 0.36 7.8E-06 52.8 5.3 67 297-374 193-259 (354)
62 PF10302 DUF2407: DUF2407 ubiq 90.1 0.71 1.5E-05 41.8 5.8 53 41-93 2-59 (97)
63 KOG4495 RNA polymerase II tran 89.9 0.51 1.1E-05 43.2 4.7 54 51-104 13-79 (110)
64 cd05167 PI4Kc_III_alpha Phosph 89.2 0.55 1.2E-05 50.5 5.1 67 298-376 151-217 (311)
65 KOG0903 Phosphatidylinositol 4 87.3 0.73 1.6E-05 54.5 4.9 142 297-452 685-834 (847)
66 cd05177 PI3Kc_C2_gamma Phospho 86.0 0.61 1.3E-05 51.1 3.2 64 297-371 193-256 (354)
67 cd00891 PI3Kc Phosphoinositide 83.6 1.1 2.4E-05 48.9 3.9 67 297-377 193-262 (352)
68 cd05166 PI3Kc_II Phosphoinosit 82.8 1.8 3.9E-05 47.4 5.0 41 297-345 192-232 (353)
69 cd05176 PI3Kc_C2_alpha Phospho 81.0 0.82 1.8E-05 50.1 1.7 41 297-345 192-232 (353)
70 cd00894 PI3Kc_IB_gamma Phospho 80.6 0.77 1.7E-05 50.5 1.3 40 298-345 203-242 (365)
71 KOG0013 Uncharacterized conser 80.3 2.2 4.9E-05 43.9 4.3 70 35-104 139-215 (231)
72 cd05165 PI3Kc_I Phosphoinositi 79.9 0.68 1.5E-05 50.9 0.6 40 298-345 203-242 (366)
73 cd05174 PI3Kc_IA_delta Phospho 79.3 0.8 1.7E-05 50.3 0.9 40 298-345 199-238 (361)
74 cd05175 PI3Kc_IA_alpha Phospho 79.2 0.82 1.8E-05 50.3 1.0 41 297-345 201-241 (366)
75 cd05173 PI3Kc_IA_beta Phosphoi 79.0 0.83 1.8E-05 50.2 0.9 40 298-345 199-238 (362)
76 cd00896 PI3Kc_III Phosphoinosi 77.1 0.95 2.1E-05 49.4 0.7 41 297-345 192-232 (350)
77 PF00789 UBX: UBX domain; Int 76.9 18 0.00038 30.7 8.3 68 37-104 4-80 (82)
78 PRK09775 putative DNA-binding 76.8 1.4 2.9E-05 49.6 1.8 41 296-340 327-368 (442)
79 PTZ00303 phosphatidylinositol 74.9 1.4 3E-05 52.4 1.3 42 297-346 1135-1176(1374)
80 KOG4583 Membrane-associated ER 74.1 0.55 1.2E-05 51.0 -2.0 75 40-116 10-94 (391)
81 cd06409 PB1_MUG70 The MUG70 pr 72.2 11 0.00024 33.7 6.0 37 42-78 3-39 (86)
82 COG5227 SMT3 Ubiquitin-like pr 71.9 16 0.00035 33.4 7.0 86 21-106 5-95 (103)
83 smart00146 PI3Kc Phosphoinosit 71.3 2 4.3E-05 42.8 1.3 64 297-374 91-156 (202)
84 PF08817 YukD: WXG100 protein 70.7 10 0.00022 32.4 5.3 65 40-104 3-78 (79)
85 cd05124 AFK Actin-Fragmin Kina 70.2 5.6 0.00012 41.6 4.3 29 296-324 121-159 (238)
86 cd05169 PIKKc_TOR TOR (Target 69.7 2.5 5.4E-05 44.2 1.7 82 297-401 171-254 (280)
87 smart00166 UBX Domain present 69.0 29 0.00064 29.5 7.8 54 38-91 3-58 (80)
88 KOG0906 Phosphatidylinositol 3 66.6 5.1 0.00011 47.2 3.4 45 297-352 684-728 (843)
89 KOG3493 Ubiquitin-like protein 63.3 3.7 8E-05 35.3 1.1 53 41-93 3-55 (73)
90 KOG0902 Phosphatidylinositol 4 62.3 3.4 7.3E-05 52.2 1.0 42 297-346 1642-1683(1803)
91 PF14453 ThiS-like: ThiS-like 59.6 25 0.00055 29.4 5.4 55 40-106 1-55 (57)
92 cd05172 PIKKc_DNA-PK DNA-depen 59.3 6.5 0.00014 40.6 2.3 43 297-346 126-168 (235)
93 cd05171 PIKKc_ATM Ataxia telan 59.1 5 0.00011 42.2 1.5 42 297-345 171-212 (279)
94 cd00892 PIKKc_ATR ATR (Ataxia 58.7 4.8 0.0001 41.5 1.3 43 297-346 129-171 (237)
95 cd06406 PB1_P67 A PB1 domain i 58.3 28 0.0006 31.0 5.7 36 51-86 12-47 (80)
96 PF09379 FERM_N: FERM N-termin 57.6 16 0.00035 30.5 4.1 41 44-84 1-42 (80)
97 PF15044 CLU_N: Mitochondrial 57.1 13 0.00029 32.1 3.6 51 56-106 1-57 (76)
98 KOG1235 Predicted unusual prot 57.0 7.7 0.00017 44.9 2.6 38 304-345 317-354 (538)
99 KOG0904 Phosphatidylinositol 3 55.5 8.8 0.00019 46.6 2.9 36 303-346 919-954 (1076)
100 smart00295 B41 Band 4.1 homolo 54.2 31 0.00068 33.1 6.0 38 39-76 3-40 (207)
101 smart00666 PB1 PB1 domain. Pho 53.8 55 0.0012 27.4 6.7 45 41-86 3-47 (81)
102 cd01787 GRB7_RA RA (RAS-associ 53.7 61 0.0013 29.2 7.2 44 41-84 4-47 (85)
103 cd00142 PI3Kc_like Phosphoinos 53.3 6.3 0.00014 39.9 1.1 67 297-376 118-185 (219)
104 cd01772 SAKS1_UBX SAKS1-like U 53.1 90 0.002 26.8 8.0 64 40-104 5-77 (79)
105 KOG0905 Phosphoinositide 3-kin 51.1 11 0.00025 47.0 2.9 36 302-345 1191-1226(1639)
106 COG0661 AarF Predicted unusual 51.0 25 0.00055 40.5 5.5 79 307-405 284-362 (517)
107 cd05164 PIKKc Phosphoinositide 49.1 8.1 0.00018 39.4 1.1 43 297-346 121-163 (222)
108 cd01767 UBX UBX (ubiquitin reg 48.1 1.2E+02 0.0026 25.5 7.9 50 41-91 4-55 (77)
109 cd05170 PIKKc_SMG1 Suppressor 48.0 9.2 0.0002 40.9 1.4 66 297-376 199-266 (307)
110 cd00754 MoaD Ubiquitin domain 46.0 73 0.0016 26.4 6.2 54 51-105 17-74 (80)
111 cd01774 Faf1_like2_UBX Faf1 ik 45.7 1.5E+02 0.0033 26.1 8.4 52 38-90 3-56 (85)
112 smart00455 RBD Raf-like Ras-bi 45.6 68 0.0015 27.3 6.0 49 43-91 3-53 (70)
113 PRK08364 sulfur carrier protei 44.1 1.1E+02 0.0025 25.6 7.1 59 40-106 5-65 (70)
114 KOG4250 TANK binding protein k 42.3 29 0.00063 41.5 4.3 42 46-87 321-362 (732)
115 PRK06437 hypothetical protein; 41.0 1.4E+02 0.0031 25.0 7.2 58 42-106 5-62 (67)
116 KOG3206 Alpha-tubulin folding 40.5 67 0.0015 33.5 6.0 52 55-106 18-80 (234)
117 cd01773 Faf1_like1_UBX Faf1 ik 40.5 1.9E+02 0.0041 25.8 8.1 64 40-104 6-78 (82)
118 cd05992 PB1 The PB1 domain is 38.0 77 0.0017 26.4 5.2 44 42-86 3-47 (81)
119 PHA02537 M terminase endonucle 37.7 20 0.00044 37.4 1.9 43 335-377 107-158 (230)
120 cd01770 p47_UBX p47-like ubiqu 36.8 2E+02 0.0042 25.0 7.6 53 40-92 5-60 (79)
121 cd01760 RBD Ubiquitin-like dom 33.6 1.1E+02 0.0023 26.5 5.4 44 42-85 2-45 (72)
122 PF14533 USP7_C2: Ubiquitin-sp 33.0 37 0.00079 34.5 2.9 30 49-78 132-161 (213)
123 PF00788 RA: Ras association ( 32.2 1.8E+02 0.004 24.4 6.7 53 42-94 5-69 (93)
124 PLN02799 Molybdopterin synthas 32.0 1.2E+02 0.0027 25.7 5.6 57 48-105 16-76 (82)
125 PF14836 Ubiquitin_3: Ubiquiti 31.1 86 0.0019 28.4 4.5 57 50-107 14-81 (88)
126 cd06407 PB1_NLP A PB1 domain i 31.0 1.3E+02 0.0027 26.6 5.5 41 44-84 3-45 (82)
127 cd06410 PB1_UP2 Uncharacterize 30.6 1.5E+02 0.0033 27.0 6.1 40 44-84 17-56 (97)
128 cd05163 TRRAP TRansformation/t 30.3 25 0.00055 36.7 1.3 42 297-345 144-185 (253)
129 PF09192 Act-Frag_cataly: Acti 29.2 22 0.00049 38.0 0.7 142 166-344 33-209 (275)
130 cd01777 SNX27_RA Ubiquitin dom 28.1 91 0.002 28.3 4.2 41 42-82 4-44 (87)
131 cd01768 RA RA (Ras-associating 27.8 2.6E+02 0.0056 23.7 6.9 28 49-76 12-39 (87)
132 PF00564 PB1: PB1 domain; Int 26.7 1.7E+02 0.0037 24.4 5.5 37 49-85 10-47 (84)
133 smart00144 PI3K_rbd PI3-kinase 26.2 2.6E+02 0.0057 25.5 7.0 66 40-105 18-102 (108)
134 PRK12540 RNA polymerase sigma 26.0 1.3E+02 0.0028 29.2 5.2 54 385-452 105-158 (182)
135 PF14847 Ras_bdg_2: Ras-bindin 24.8 1.1E+02 0.0024 28.3 4.2 37 41-77 2-38 (105)
136 KOG0608 Warts/lats-like serine 24.5 59 0.0013 39.2 2.9 37 296-345 742-778 (1034)
137 COG5032 TEL1 Phosphatidylinosi 24.0 37 0.00081 45.4 1.4 44 296-346 1931-1974(2105)
138 cd06396 PB1_NBR1 The PB1 domai 24.0 1.8E+02 0.0039 26.0 5.2 45 43-93 2-49 (81)
139 cd06408 PB1_NoxR The PB1 domai 23.7 2.1E+02 0.0046 25.8 5.7 60 41-104 2-62 (86)
140 PF08671 SinI: Anti-repressor 23.5 1.1E+02 0.0023 22.7 3.1 22 405-426 7-28 (30)
141 PRK04171 ribosome biogenesis p 23.1 1.6E+02 0.0035 30.8 5.5 61 11-83 65-130 (222)
142 TIGR01682 moaD molybdopterin c 22.8 3.6E+02 0.0078 22.8 6.8 58 47-105 12-74 (80)
143 COG4106 Tam Trans-aconitate me 22.1 70 0.0015 33.9 2.7 28 594-621 211-238 (257)
144 PF08783 DWNN: DWNN domain; I 22.0 1.2E+02 0.0025 26.7 3.6 51 54-104 14-70 (74)
145 PF02824 TGS: TGS domain; Int 21.3 2.6E+02 0.0057 22.8 5.4 58 42-105 1-59 (60)
146 KOG1639 Steroid reductase requ 20.2 1.8E+02 0.0039 31.3 5.2 65 40-104 1-76 (297)
147 cd06411 PB1_p51 The PB1 domain 20.2 1.9E+02 0.0041 25.8 4.5 36 50-85 7-42 (78)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-69 Score=550.37 Aligned_cols=283 Identities=48% Similarity=0.724 Sum_probs=259.9
Q ss_pred HHHHHHHHcCCCCcccccccceEEEEEeCCCCeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchh-hhhh
Q 006592 151 KEIVKAMKKGIDPIPVHSGLGGAYYFRNCAGENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFR-EVAA 229 (639)
Q Consensus 151 ~~v~~ai~~G~~P~~i~~GSgGsYf~~n~~Gk~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krGtlvGe~a~R-EVAA 229 (639)
.++..|++.|+.|.+++.|++|+|||++..|..+|||||+|||||++|||+|......|+||+++||++||+|+| |+||
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~aa 81 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGWIVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAAA 81 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccceeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhhh
Confidence 567889999999999999999999999999988999999999999999999977777788999999999999998 9999
Q ss_pred hhhcCCCCCCCCcceEEEeeccccccCCCCCcccccccCCCCccceeeecccCCCCCCCCCCCCCChhhhhhccccceEe
Q 006592 230 YLLDYDHFANVPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFDASDHGTSSFPVAAVHRIGILDIRI 309 (639)
Q Consensus 230 YLLD~~gf~~VP~T~lV~~~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~a~d~g~~~F~v~evhKIaILDiri 309 (639)
|||||++|+.||+|.+|+++|+.||+++....+.... ..|+||+|+||++ +++.|+++.+|++++||||+||||||
T Consensus 82 yLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~---~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~hkivvlD~ri 157 (286)
T KOG2381|consen 82 YLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQGK---KSKIGSLQLFVEG-YSAADYGLRRFEAEEVHKIVVLDIRI 157 (286)
T ss_pred hccCccccCCCCceeeEEEeeecccccccceeccccc---ccchhhHHHhhcC-ccccceeEEeccccccceeEEEEEEe
Confidence 9999999999999999999999999998754332211 2799999999999 89999999999999999999999999
Q ss_pred ecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHhcCCcccchhHHHhhC
Q 006592 310 LNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQLDPFGDSGMLRLEL 389 (639)
Q Consensus 310 ~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~LD~~~D~~~Lr~~L 389 (639)
+|||||+|||||++.+..+ .-...+|||||||.+|+|+||+|++||||..|||+++++|| ||+..|+++||
T Consensus 158 ~NtDRh~~N~lvk~~~~~~----~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~~~r--- 228 (286)
T KOG2381|consen 158 RNTDRHAGNWLVKKEPTLE----QAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCNLLR--- 228 (286)
T ss_pred eccCCCCCceeEEeccCcc----cccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHHHHH---
Confidence 9999999999999965322 23455699999999999999999999999999999999999 99999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCCCCCCChHHHHHHHHHHHHhh
Q 006592 390 PMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEE 451 (639)
Q Consensus 390 ~~lre~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~i~~~A~~~~~~ 451 (639)
++.++|+|+++++|+|+|++++.|||+.+||.+|+|++..+ |.+|.+|.+|.+.+.+
T Consensus 229 -~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~----~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 229 -ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD----SKLEQLCVEAKASVVE 285 (286)
T ss_pred -HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh----CccHHHHHhhhhcccC
Confidence 45799999999999999999999999999999999999754 9999999999877654
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=5.3e-47 Score=380.17 Aligned_cols=191 Identities=26% Similarity=0.328 Sum_probs=163.9
Q ss_pred cccccccceEEEEEeCCC--CeEEEEeCCCCCCCCCCCCCc-ccccccCCCCCCCccccCCcchhhhhhhhhcC-CCCCC
Q 006592 164 IPVHSGLGGAYYFRNCAG--ENVAIVKPTDEEPYAPNNPKG-FVGSALGQPGLKRSVRVGETGFREVAAYLLDY-DHFAN 239 (639)
Q Consensus 164 ~~i~~GSgGsYf~~n~~G--k~vaVFKP~DEEP~a~nNPk~-f~~~~~g~~g~krGtlvGe~a~REVAAYLLD~-~gf~~ 239 (639)
-+|.++||+||+|....| ...|||||+.+| +|+| ||. || +|.|||||||||+ .||++
T Consensus 10 gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gE-----rPLWDFpd----------Gt----La~REvAAYlvs~~lGw~~ 70 (253)
T TIGR03843 10 GRLVDASNATLLCEVTLGGVSARAVYKPVRGE-----RPLWDFPD----------GT----LAGREVAAYLVSEALGWGL 70 (253)
T ss_pred EEEccccceeEEEEEecCCeeEEEEECCcCCc-----cccccCCC----------Cc----hHHHHHHHHHHHHHhCCCc
Confidence 368899999999997655 568999999999 9999 665 45 4899999999995 99999
Q ss_pred CCcceEEEeeccccccCCCCCcccccccCCCCccceeeecccCCCC--------CCCCCCCCCCh---------------
Q 006592 240 VPCTALVKVTHEIFNINNGVNGNKIRKRKQVSKIASLQQFIPHDFD--------ASDHGTSSFPV--------------- 296 (639)
Q Consensus 240 VP~T~lV~~~hp~Fn~~~~~~~~~~~~~~~p~KiGSlQ~FV~~d~~--------a~d~g~~~F~v--------------- 296 (639)
||+|++++ | |.|+||+|+||+++.+ +++.++++|+|
T Consensus 71 VPpTvlrD----------G-----------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~l~h 129 (253)
T TIGR03843 71 VPPTVLRD----------G-----------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVH 129 (253)
T ss_pred CCCeeeec----------C-----------CCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcceeecc
Confidence 99999984 4 8899999999998754 34567777763
Q ss_pred ---hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHH
Q 006592 297 ---AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYI 373 (639)
Q Consensus 297 ---~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI 373 (639)
.++|||+|||++|+|+|||+||||+.+ +| +|+||||||||| ++++|+|++|+||++|||+++++||
T Consensus 130 ~d~~~l~riaVfDi~inNaDRk~GhiL~~~---dg-----~l~~IDHGl~f~---~~~klrtvlW~wag~Pls~e~l~~i 198 (253)
T TIGR03843 130 ADHPQLRRMAVFDALVNNADRKGGHVLPGP---DG-----RVWGVDHGVCFH---VEPKLRTVLWGWAGEPLPAELLADL 198 (253)
T ss_pred cccHHHhhhhhheeeeecCCCCCCcEeEcC---CC-----cEEEecCceecC---CCCcccccccccccCCCCHHHHHHH
Confidence 579999999999999999999999987 44 499999999999 7899999999999999999999999
Q ss_pred hcCCcccchhHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccc
Q 006592 374 NQLDPFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREF 428 (639)
Q Consensus 374 ~~LD~~~D~~~Lr~~L~~lre~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~ 428 (639)
++|+.+.+. . |...++..||..||+++..|..
T Consensus 199 ~~L~~~l~~----------------------~-l~~~L~~llt~~Ei~Al~~R~~ 230 (253)
T TIGR03843 199 ARLRDDLDG----------------------D-LGRELAELLTPEEVAALRRRVD 230 (253)
T ss_pred HHHHHhhcC----------------------h-HHHHHHHhCCHHHHHHHHHHHH
Confidence 999654431 1 4555667799999999999863
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.60 E-value=2.1e-15 Score=126.16 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=64.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999885 999999999964
No 4
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-15 Score=124.21 Aligned_cols=66 Identities=20% Similarity=0.367 Sum_probs=63.5
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|.|.|||++||.+.+++++.|+|..+|.+|++++|||+.||||||.|+|+.||.+ ++..+|+|||+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 6799999999999999999999999999999999999999999999999999986 89999999985
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.57 E-value=7.6e-15 Score=131.70 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=69.4
Q ss_pred ccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 33 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 33 ~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
-.++++.|+|||||..|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|++++||||+
T Consensus 21 ~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 21 KLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLV 97 (103)
T ss_pred eeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 45588999999999999999999999999999999999999999999999999999999985 99999999995
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.57 E-value=6.7e-15 Score=123.22 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=61.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
||||||+ +++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.+ +|++++||||+
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 7999998 5899999999999999999999999999999999999999999985 99999999994
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.56 E-value=8e-15 Score=125.15 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=62.8
Q ss_pred cEEEEEeCCCcE-EEEE-ecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYV-LGME-LDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGkt-l~~e-Vd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|||||.+|++ +.++ |++++||++||++|++++|||+++|||+|+|++|+|+.+ ||+++++|||+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEE
Confidence 799999999997 6895 899999999999999999999999999999999999985 99999999995
No 8
>PTZ00044 ubiquitin; Provisional
Probab=99.55 E-value=1.5e-14 Score=120.74 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=64.0
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|||||.+|++++++|++++||.+||++|+++.|||+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999998874 999999999953
No 9
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.55 E-value=1e-14 Score=120.64 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=62.7
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|||||.+|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+ +|+++|||||++
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999885 999999999985
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.51 E-value=3.6e-14 Score=118.83 Aligned_cols=65 Identities=11% Similarity=0.210 Sum_probs=62.4
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|||||..|++++++|++++||.+||++|+++.|||+++|+|+|+|++|+|+.+ +|++++||||+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999999999985 999999999953
No 11
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.6e-15 Score=132.75 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=64.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|||+|.+|||++++|++++||..||++|+.++|||+++|+|+|+|++|+|..+ ||+..+|||++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~ 70 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhh
Confidence 6899999999999999999999999999999999999999999999999999986 99999999995
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.48 E-value=8.6e-14 Score=117.72 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=63.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|+|||..|+++.++|++++||++||++|+++.|+|+++|||+|+|+.|+|+.+ +|++++||||-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999985 99999999994
No 13
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.47 E-value=9.5e-14 Score=116.30 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=60.7
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 43 FVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 43 fVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
.||+.+|+++.++|++++||.+||++|++++|||+++|+|+|+|+.|+|+.+ +|.+++||||+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999985 99999999995
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.46 E-value=2.3e-13 Score=112.53 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=64.3
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.++|+++.||.+||++|+++.|+|+++|+|+|+|+.|.|+.+ +|+++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999875 999999999964
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.46 E-value=2.3e-13 Score=113.61 Aligned_cols=67 Identities=21% Similarity=0.369 Sum_probs=64.0
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCC--CCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDV--PTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGI--P~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+|||.+|+++.++|++++||.+||++|++++|+ |+++|+|+|+|+.|+|+.+ +|+++++|+++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 799999999999999999999999999999999999 9999999999999999874 999999999964
No 16
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.5e-14 Score=136.14 Aligned_cols=66 Identities=26% Similarity=0.479 Sum_probs=63.7
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
|+|||||++|+++.++|++++||..||++||+++|||++||||||.|++|+|+.+ +|+..+||||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEE
Confidence 7999999999999999999999999999999999999999999999999999774 99999999994
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.45 E-value=2.1e-13 Score=112.74 Aligned_cols=67 Identities=27% Similarity=0.466 Sum_probs=64.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+ +|+++++|||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999999999885 999999999953
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.45 E-value=2.7e-13 Score=111.03 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=64.3
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+.+|+++.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+ +|+++++|||++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 6899999999999999999999999999999999999999999999999999885 999999999974
No 19
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.43 E-value=3.3e-13 Score=114.82 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC---CCcCCCCceeeec
Q 006592 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL---SYVRHDSPLLLTR 106 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~---t~I~~dStLhLvR 106 (639)
+|+|+||+..|+++.++|+++.||++||++|+++.|+|+++|||+|+|+.|.|+. +||+++++|||+.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~~L~~~gi~~~~~i~l~~ 71 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSGKLQDLGLGDGSKLTLVP 71 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCCcHHHcCCCCCCEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999882 2999999999986
No 20
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.41 E-value=4e-13 Score=112.26 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=60.3
Q ss_pred EEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-C----CCcCCCCceeee
Q 006592 42 VFVQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-L----SYVRHDSPLLLT 105 (639)
Q Consensus 42 IfVKT~-tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd-~----t~I~~dStLhLv 105 (639)
|+|||. +|+++.++|++++||++||++|++++|||+++|+|+|+|+.|+|+ . ++|+++++|||-
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 689999 999999999999999999999999999999999999999999887 3 399999999983
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.39 E-value=1e-12 Score=109.11 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=61.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+.|+|||.+|+. .++|++++||++||++|++++|+|+++|+|+|+|++|.|+.+ +|++++||||+
T Consensus 1 ~~i~vk~~~g~~-~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCCE-EEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 469999999985 899999999999999999999999999999999999999874 99999999996
No 22
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.37 E-value=9.4e-13 Score=112.14 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEE--EECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSL--IYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrL--iFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+||+..|+++.++|++++||.+||++|++++|+|+++||| +|+|+.|+|+.+ ||+++++|||+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 8999999999999999999999999999999999999999999 899999999875 999999999964
No 23
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.29 E-value=6.9e-12 Score=108.27 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=58.5
Q ss_pred cEEEEEeCCCcEEEE--EecCCCCHHHHHHHHHHHcC--CCCCCeEEEECCeEeccCCC------CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGM--ELDRSDNAHTVKRKLQLALD--VPTEERSLIYGDTVLKNDLS------YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~--eVd~sdTV~~VKqkIqekeG--IP~eqQrLiFgGk~LeDd~t------~I~~dStLhLvR 106 (639)
+.|+|||.+|+++.| +|++++||.+||++|++..+ .|+++|||||.|+.|+|+.+ .+.++.|||||-
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999999555 55899999999999999874 45799999999999999875 489999999984
No 24
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.25 E-value=1.5e-11 Score=100.49 Aligned_cols=62 Identities=26% Similarity=0.433 Sum_probs=59.0
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 45 QTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 45 KT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
||.+|+++.++|+++.||.+||++|++..|+|+++|+|+|+|+.|+|+.+ +|.++++|||+.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 79999999999999999999999999999999999999999999988875 999999999964
No 25
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.24 E-value=3.8e-11 Score=104.20 Aligned_cols=73 Identities=7% Similarity=0.120 Sum_probs=68.6
Q ss_pred ccccCCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 33 ESQHSGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 33 ~~~~sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
+...+..++|+||+.+|+++.|+|.+++++..||++++++.|||+++|||+|+|++|.++.| +++++++||++
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 34467789999999999999999999999999999999999999999999999999999886 99999999995
No 26
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.24 E-value=2.1e-11 Score=100.04 Aligned_cols=65 Identities=18% Similarity=0.234 Sum_probs=61.3
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
++|+||+. |+++.++|+++.||.+||++|++..|+|+++|+|+|+|+.|.|+.+ +|+++++||++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 47999997 9999999999999999999999999999999999999999998774 89999999986
No 27
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.15 E-value=7.4e-11 Score=99.62 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=56.6
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 47 EMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 47 ~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
++|+++.++|++++||.+||++|+...|||+++|+|+|+|+.|+|+.+ +|+++++|||+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~ 67 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQ 67 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEE
Confidence 589999999999999999999999999999999999999999999985 99999999995
No 28
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=4.1e-10 Score=121.49 Aligned_cols=67 Identities=13% Similarity=0.314 Sum_probs=63.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcC---CCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALD---VPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeG---IP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|+|+|||+.|+++.|+|++++||.+||++|+...| +|+++|+|||+|+.|+|+.+ +|.++++|+++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 79999999999999999999999999999999998 99999999999999999985 999999999853
No 29
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.05 E-value=6.1e-10 Score=88.35 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=54.7
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCC
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDS 100 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dS 100 (639)
|+|+||+.+ +++.++|+++.||++||++|+.+.|+|+++|+|+|+|+.|.|+.+ +|++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999999 799999999999999999999999999999999999999998764 666553
No 30
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.04 E-value=1.7e-12 Score=128.61 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=78.2
Q ss_pred cccCCcchhhhhhhhhcCC----C-CCCCCcceEE---------EeeccccccCCCCCcc-cccccCCCCccceeeeccc
Q 006592 217 VRVGETGFREVAAYLLDYD----H-FANVPCTALV---------KVTHEIFNINNGVNGN-KIRKRKQVSKIASLQQFIP 281 (639)
Q Consensus 217 tlvGe~a~REVAAYLLD~~----g-f~~VP~T~lV---------~~~hp~Fn~~~~~~~~-~~~~~~~p~KiGSlQ~FV~ 281 (639)
++.++.+.+++.+|.+... | ..-||.|.-. +..++.+++....... .........+.++.|.|+.
T Consensus 28 ~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 107 (235)
T PF00454_consen 28 ILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLK 107 (235)
T ss_dssp HHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHHH
T ss_pred HHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHHh
Confidence 4455566788999988852 2 2445655322 2222222221110000 0001123578899999998
Q ss_pred CCCCCCCCC-CCCCChhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC----ccCCCCCcccc
Q 006592 282 HDFDASDHG-TSSFPVAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP----ENLEDPYFEWI 356 (639)
Q Consensus 282 ~d~~a~d~g-~~~F~v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP----~~~~d~~f~Wl 356 (639)
...+++++. ....-+.+++.++|+||+++|.|||.+|||+... +| ++++||||+||+ ...+...|+|-
T Consensus 108 ~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~--~g-----~~~hIDfg~~f~~~~~~~~e~vPFrLT 180 (235)
T PF00454_consen 108 SFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK--TG-----ELIHIDFGFIFGGKHLPVPETVPFRLT 180 (235)
T ss_dssp HSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET--TS-----EEEE--HSSCTTHHHGSSSS--SSTTH
T ss_pred cCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc--cc-----eeeeEEeHHhhhccccCCCCCCCeEeC
Confidence 777765554 2333368999999999999999999999999442 34 499999999999 23344456665
Q ss_pred cccccCCCCCHHHHHHHhc-CCcccchhHHHhhC
Q 006592 357 HWAQASIPFSEDELEYINQ-LDPFGDSGMLRLEL 389 (639)
Q Consensus 357 ~WPqA~~PFS~e~leyI~~-LD~~~D~~~Lr~~L 389 (639)
. ...+.+.. |++..+...++...
T Consensus 181 ~----------~~~~~~~~~l~~~~~~g~f~~~~ 204 (235)
T PF00454_consen 181 R----------NMVNAMGGYLGPSGVEGLFRSSC 204 (235)
T ss_dssp H----------HHHHHTTTSSSTSHHHHHHHHHH
T ss_pred H----------HHHHHHhccCCCchhHhHHHHHH
Confidence 3 22333211 48888888777765
No 31
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.99 E-value=3.9e-10 Score=96.65 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHH--cCCC-CCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 58 RSDNAHTVKRKLQLA--LDVP-TEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 58 ~sdTV~~VKqkIqek--eGIP-~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.++||.+||++|+++ +|++ +++|||||+|++|+|+.+ +|++++||||+|
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 578999999999999 4675 899999999999999986 999999999997
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.98 E-value=8.3e-10 Score=94.01 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=54.0
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-CC----CcC-CCCceee
Q 006592 44 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-LS----YVR-HDSPLLL 104 (639)
Q Consensus 44 VKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd-~t----~I~-~dStLhL 104 (639)
=|...|.+++++|++++||++||++|++++|||+++||| |+|+.|.++ .+ +++ +|++|||
T Consensus 7 ~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 7 DAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred ccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 356789999999999999999999999999999999999 999999644 43 888 7899998
No 33
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.98 E-value=1.3e-09 Score=92.40 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=59.9
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE---CCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY---GDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF---gGk~LeDd~t----~I~~dStLhLv 105 (639)
+.|.||- .|+++.++|++++||++||++|++..|+|+++|+|+| +|+.|.|+.+ +|.+++.|+|+
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4678886 8999999999999999999999999999999999996 8999999875 89999999986
No 34
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.91 E-value=1.8e-09 Score=118.48 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=70.0
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeeccccCCCC
Q 006592 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTRNCMHRSS 113 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvRs~IhRSs 113 (639)
...+|.|||..+ ++.|.|..+.||.++|+.|+..+++|+|+|+|||.||.|+|+.+ +|++|.|||||++..+|+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~~ 92 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRPT 92 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCCC
Confidence 457899999998 88999999999999999999999999999999999999999885 9999999999986555555
Q ss_pred CCC
Q 006592 114 STP 116 (639)
Q Consensus 114 StP 116 (639)
.++
T Consensus 93 ~~~ 95 (493)
T KOG0010|consen 93 GTA 95 (493)
T ss_pred Ccc
Confidence 433
No 35
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.75 E-value=2.6e-08 Score=79.95 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=58.2
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 44 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 44 VKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
||..+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+.+ ++.++++|+++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 788899999999999999999999999999999999999999999988774 89999999985
No 36
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.70 E-value=6.8e-08 Score=76.38 Aligned_cols=66 Identities=27% Similarity=0.465 Sum_probs=62.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+++|+|..|+++.++|.++++|..+|.+|+...|+|..+|+|.|+|+.|.|+.+ +|...+++||+.
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVL 70 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEE
Confidence 479999999999999999999999999999999999999999999999998874 899999999964
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.64 E-value=1.3e-07 Score=78.18 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=61.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC-CCeEEEECCeEeccCCC----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT-EERSLIYGDTVLKNDLS----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~-eqQrLiFgGk~LeDd~t----~I~~dStLhLv 105 (639)
++|+|++.+|+.+.+.|.++.++..|+++++++.|+|. ++.+|+|+|+.|..+.| +++++++|+++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 58999999999999999999999999999999999999 99999999999998887 99999999985
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.58 E-value=8.1e-08 Score=88.15 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCcEEEEEeCCCcEEE-EEecCCCCHHHHHHHHH-----HHcCCC--CCCeEEEECCeEeccCCC----C------cCCC
Q 006592 38 GKRRVFVQTEMGYVLG-MELDRSDNAHTVKRKLQ-----LALDVP--TEERSLIYGDTVLKNDLS----Y------VRHD 99 (639)
Q Consensus 38 d~~qIfVKT~tGktl~-~eVd~sdTV~~VKqkIq-----ekeGIP--~eqQrLiFgGk~LeDd~t----~------I~~d 99 (639)
+..-|..|-.+|..+. +.+++++||.+||++|+ .++|+| +++|+|||.|++|+|+.+ + ++..
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 3456777888886654 48899999999999999 667787 999999999999999985 5 7788
Q ss_pred Cceee-ec
Q 006592 100 SPLLL-TR 106 (639)
Q Consensus 100 StLhL-vR 106 (639)
.|+|| +|
T Consensus 83 ~TmHvvlr 90 (113)
T cd01814 83 ITMHVVVQ 90 (113)
T ss_pred eEEEEEec
Confidence 99999 55
No 39
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.38 E-value=5.8e-07 Score=81.12 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=51.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC-C----CcCCCCceeee
Q 006592 50 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL-S----YVRHDSPLLLT 105 (639)
Q Consensus 50 ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~-t----~I~~dStLhLv 105 (639)
+..++.|.+++||+.||.+|+.++++|+++|+|+|+|+.|.||- + +|..+|+|+|+
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Ll 75 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLK 75 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEE
Confidence 35567899999999999999999999999999999999998876 3 99999999995
No 40
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.33 E-value=9.5e-07 Score=93.46 Aligned_cols=65 Identities=23% Similarity=0.411 Sum_probs=59.8
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcC--CCCCCeEEEECCeEeccCCC----CcCCCCceee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALD--VPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeG--IP~eqQrLiFgGk~LeDd~t----~I~~dStLhL 104 (639)
|.|+|||+.|.+|+++|.+++||..||++|+...| .|.++|.|||.|+.|.|+.+ +|..+.-|-+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEE
Confidence 68999999999999999999999999999999988 99999999999999999986 7777665555
No 41
>PLN02560 enoyl-CoA reductase
Probab=98.12 E-value=5.8e-06 Score=87.60 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=57.8
Q ss_pred cEEEEEeCCCcEE---EEEecCCCCHHHHHHHHHHHcCC-CCCCeEEEEC---C----eEeccCCC----CcCCCCceee
Q 006592 40 RRVFVQTEMGYVL---GMELDRSDNAHTVKRKLQLALDV-PTEERSLIYG---D----TVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT~tGktl---~~eVd~sdTV~~VKqkIqekeGI-P~eqQrLiFg---G----k~LeDd~t----~I~~dStLhL 104 (639)
|+|.||+.+|+.+ +++|+++.||++||++|+++.++ ++++|||++. | ..|.|+.+ +++++++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6899999999998 79999999999999999999987 8899999983 3 37787764 8899999888
Q ss_pred e
Q 006592 105 T 105 (639)
Q Consensus 105 v 105 (639)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 42
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=3.1e-06 Score=99.58 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=62.0
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
.|.|||++.++.+|-|+.-+||..+|..|.++.+|+.+.|||||+|++|.||++ +| +|-|||||-
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeec
Confidence 489999999999999999999999999999999999999999999999999985 88 999999974
No 43
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.10 E-value=1.3e-05 Score=69.51 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=52.9
Q ss_pred EEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEE-EECCe-----EeccCC-C----CcCCCCceeeec
Q 006592 41 RVFVQTEM-GYVLGMELDRSDNAHTVKRKLQLALDVPTEERSL-IYGDT-----VLKNDL-S----YVRHDSPLLLTR 106 (639)
Q Consensus 41 qIfVKT~t-Gktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrL-iFgGk-----~LeDd~-t----~I~~dStLhLvR 106 (639)
.|+|++.. .+.....+.++.||.+||++|+..+|+|+..|+| +|.++ .|.||. + +++++++||++-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46676643 3445555999999999999999999999999999 57877 575554 2 999999999974
No 44
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0001 Score=80.25 Aligned_cols=173 Identities=23% Similarity=0.244 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCCCcccccccceE---EEEEeCCCCeEEEEeCC----CCCCCCCCCCCcccccccCCCCCCCccccC
Q 006592 148 QLVKEIVKAMKKGIDPIPVHSGLGGA---YYFRNCAGENVAIVKPT----DEEPYAPNNPKGFVGSALGQPGLKRSVRVG 220 (639)
Q Consensus 148 ~lv~~v~~ai~~G~~P~~i~~GSgGs---Yf~~n~~Gk~vaVFKP~----DEEP~a~nNPk~f~~~~~g~~g~krGtlvG 220 (639)
+++..+..|+..--. +.+.-+-+|| ..++=+ +..-+||||. |+|. -|-.|. ||-|
T Consensus 151 ~~~~alL~~l~~~pI-~~v~v~~~GtqLKlll~~~-~~~KavfKPmR~~Rd~~~----~~~yfs-------~~dR----- 212 (486)
T KOG3829|consen 151 QSMGALLHALRTEPI-TRVSVLGRGTQLKLLLRLS-HQQKVVFKPMRYPRDEVI----DGMYYS-------GFDR----- 212 (486)
T ss_pred hhHHHHHHHhhcCcc-eEEeecCCceEEEEEEEec-CCceeeeccccCCccccC----CCcccc-------cccc-----
Confidence 667777777765322 2455566677 444444 3457899976 4442 111232 2222
Q ss_pred CcchhhhhhhhhcC-CCCCCCCcceEE--Eeecc-----------ccccCCCCCccc---------cc---ccCCCCccc
Q 006592 221 ETGFREVAAYLLDY-DHFANVPCTALV--KVTHE-----------IFNINNGVNGNK---------IR---KRKQVSKIA 274 (639)
Q Consensus 221 e~a~REVAAYLLD~-~gf~~VP~T~lV--~~~hp-----------~Fn~~~~~~~~~---------~~---~~~~p~KiG 274 (639)
---||||+=||. .||..+|||+=+ .++-. +|+..-+.+..- .. =....-..|
T Consensus 213 --HnAEiAAFHLDRiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~~avCg~pdmlEG 290 (486)
T KOG3829|consen 213 --HNAEVAAFHLDRVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTEEAVCGDPDMLEG 290 (486)
T ss_pred --cchhhhhhhhhhhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCcccccCCcccccc
Confidence 125999999998 899999999743 33221 233222111000 00 012367889
Q ss_pred eeeecccCCCCCCC-CCCC----CCC----------------------------hhhhhhccccceEeecCCCCCCceEE
Q 006592 275 SLQQFIPHDFDASD-HGTS----SFP----------------------------VAAVHRIGILDIRILNTDRHAGNLLV 321 (639)
Q Consensus 275 SlQ~FV~~d~~a~d-~g~~----~F~----------------------------v~evhKIaILDiri~NtDRh~GNiLV 321 (639)
|+|.|+++...... ..++ .+. .-++-.|+||||+|.|.|||-=--.-
T Consensus 291 S~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLiGN~DRHHYEtF~ 370 (486)
T KOG3829|consen 291 SLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLIGNMDRHHYETFE 370 (486)
T ss_pred eEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 99999996332211 0000 000 24678899999999999999643221
Q ss_pred eeecCCCCCcceEEEeecCccccCc
Q 006592 322 KKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 322 ~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
.. | +.--++-+|||=+|-.
T Consensus 371 ~f----~--d~s~~ihLDngr~FGr 389 (486)
T KOG3829|consen 371 VF----G--DLSFLIHLDNGRAFGR 389 (486)
T ss_pred cc----C--CcceEEEeccccccCC
Confidence 11 1 1245889999999873
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.62 E-value=0.00026 Score=52.24 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=54.1
Q ss_pred EeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC----CCcCCCCceeee
Q 006592 45 QTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL----SYVRHDSPLLLT 105 (639)
Q Consensus 45 KT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~----t~I~~dStLhLv 105 (639)
+..+|....+.+.+..||++||++|.++.|++++.|.|+++|..+.+.. +++.++++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 3347899999999999999999999999999999999999999998776 378889998885
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.33 E-value=0.00083 Score=58.19 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=50.8
Q ss_pred EEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC----C---eEeccCC-C----CcCCCCceeeec
Q 006592 41 RVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG----D---TVLKNDL-S----YVRHDSPLLLTR 106 (639)
Q Consensus 41 qIfVKT~tG--ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg----G---k~LeDd~-t----~I~~dStLhLvR 106 (639)
.|+|.+..- +.....+.++.||++||++|+...|+|+..|+|.+- + ..|.|+. + +++++.+||++-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 466666555 488899999999999999999999999999999665 2 2344443 2 999999999963
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.14 E-value=0.0013 Score=61.11 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=52.2
Q ss_pred EEEEeCCCcE-EEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----Cc-------CCCCceee-ec
Q 006592 42 VFVQTEMGYV-LGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YV-------RHDSPLLL-TR 106 (639)
Q Consensus 42 IfVKT~tGkt-l~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I-------~~dStLhL-vR 106 (639)
+|+..---|+ +-++++++.||.+||++|+.-...|+++|||+-+++.|+|+.+ |+ ++.++|-| .|
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 4444433443 3349999999999999999999999999999966788999885 77 78999999 55
No 48
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.07 E-value=0.0015 Score=55.54 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=48.9
Q ss_pred EEEEEeCCCcEEE-EEec-CCCCHHHHHHHHHHHcC-CCCCCeEEE--ECCeEeccCCC----CcCCCCceee
Q 006592 41 RVFVQTEMGYVLG-MELD-RSDNAHTVKRKLQLALD-VPTEERSLI--YGDTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 41 qIfVKT~tGktl~-~eVd-~sdTV~~VKqkIqekeG-IP~eqQrLi--FgGk~LeDd~t----~I~~dStLhL 104 (639)
.|.+|....+.+. ++++ ++.||.+||+.|+++.+ ++++.|||. +.|+.|.|+.+ |+.++++||+
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 3555654324443 4444 88999999999999975 578999995 77999988875 8999999886
No 49
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.02 E-value=0.0042 Score=57.21 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred cEEEEEeCCCc-EEEEEecCCCCHHHHHHHHHHH-----c--CCCCCCeEEEECCeEeccCCC----CcCCC------Cc
Q 006592 40 RRVFVQTEMGY-VLGMELDRSDNAHTVKRKLQLA-----L--DVPTEERSLIYGDTVLKNDLS----YVRHD------SP 101 (639)
Q Consensus 40 ~qIfVKT~tGk-tl~~eVd~sdTV~~VKqkIqek-----e--GIP~eqQrLiFgGk~LeDd~t----~I~~d------St 101 (639)
..|..+-.+|+ +-.+.+++++||.+||++|... . -..+.+.||||.|+.|+|+.+ .+.-+ .|
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34556667999 8889999999999999999875 1 123357899999999999885 34332 37
Q ss_pred eeee
Q 006592 102 LLLT 105 (639)
Q Consensus 102 LhLv 105 (639)
+||+
T Consensus 83 mHlv 86 (111)
T PF13881_consen 83 MHLV 86 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8994
No 50
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.01 Score=63.41 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=55.3
Q ss_pred cEEEEE---eCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 40 RRVFVQ---TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVK---T~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
|.|+|+ |..-..++++|+.+.+|.+||+-+++..|+|++|-++||.|+.|.|+-+ -+.-.|.+|.++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 345554 4466788899999999999999999999999999999999999998864 455567888864
No 51
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=96.29 E-value=0.0014 Score=55.87 Aligned_cols=38 Identities=32% Similarity=0.265 Sum_probs=28.5
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee
Q 006592 296 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI 338 (639)
Q Consensus 296 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI 338 (639)
+.++-++.+|+++|+|+|||.+||-+-.. .+.++|.|+
T Consensus 40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-----~~~~~LaP~ 77 (79)
T PF07804_consen 40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-----GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHCTBS---CCCSEEEEE-----CCEEEE--B
T ss_pred HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-----CCeEEecCC
Confidence 57889999999999999999999999883 246789987
No 52
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.09 E-value=0.0079 Score=52.29 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC---CeEec--cCCC----CcCCCCceeee
Q 006592 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG---DTVLK--NDLS----YVRHDSPLLLT 105 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg---Gk~Le--Dd~t----~I~~dStLhLv 105 (639)
+-|-|=||+..|- ..|+|++++|+.+||++|++.+++|.+.|.|..+ ...|. ++.+ ||+.|+.|+|.
T Consensus 3 ~~milRvrS~dG~-~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDGM-KRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSEE-EEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCCC-EEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 4478889998874 5589999999999999999999999998888443 11221 1222 77777777663
No 53
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=95.39 E-value=0.058 Score=47.08 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=53.7
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC----CeEeccCCC-----CcCCCCceeee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG----DTVLKNDLS-----YVRHDSPLLLT 105 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg----Gk~LeDd~t-----~I~~dStLhLv 105 (639)
.||.||-..+..+++.|.|...|..||.+|....|++ .+|||.|- -++|-.+.+ ||-.+-.|.|+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 3899999999999999999999999999999999999 69999994 456655554 66655555554
No 54
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.053 Score=60.60 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=58.2
Q ss_pred EEEEEeCCCcEEEEE-ecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccC-C---CCcCCCCceeee
Q 006592 41 RVFVQTEMGYVLGME-LDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKND-L---SYVRHDSPLLLT 105 (639)
Q Consensus 41 qIfVKT~tGktl~~e-Vd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd-~---t~I~~dStLhLv 105 (639)
.|.||- .|+++.++ ++..+|+..+|+++....|+||+.|++.+.|..+.|| + -.|.++.+|||+
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMM 73 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEee
Confidence 466775 89999998 9999999999999999999999999999999999988 3 279999999996
No 55
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=94.30 E-value=0.034 Score=57.04 Aligned_cols=108 Identities=20% Similarity=0.185 Sum_probs=64.4
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHhc
Q 006592 296 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQ 375 (639)
Q Consensus 296 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~ 375 (639)
+.++-.|+|||++|+|+|||-.|..-+- |. ..-++-+|||-.|-...-|..---+.+-|+ -=|...|.+.++.
T Consensus 89 LldliDm~IFDFLigN~DRhhye~f~~f----gn--~~~l~~LDNgrgFG~~~~de~sIlaPL~Qc-C~iRrST~~rL~~ 161 (221)
T PF06702_consen 89 LLDLIDMAIFDFLIGNMDRHHYETFNKF----GN--EGFLLHLDNGRGFGRPSHDELSILAPLYQC-CRIRRSTWERLQL 161 (221)
T ss_pred hhHHHHHHHHHHHhcCCcchhhhhhhcc----CC--CceEEEEeCCcccCCCCCCccchhccHHHh-hhccccHHHHHHH
Confidence 5678899999999999999999966322 22 234789999999943222211001333344 4466777777776
Q ss_pred CC--cccchhHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Q 006592 376 LD--PFGDSGMLRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSRE 427 (639)
Q Consensus 376 LD--~~~D~~~Lr~~L~~lre~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~ 427 (639)
|. ...-.++||+.+ ....+..=|+-..+.+|..|.
T Consensus 162 l~~~~~~Ls~~m~~s~-----------------~~D~l~PvL~e~Hl~AldrRL 198 (221)
T PF06702_consen 162 LSKGGYRLSDLMRESL-----------------SRDPLAPVLTEPHLEALDRRL 198 (221)
T ss_pred hccCCCcHHHHHHHHh-----------------ccCccCccCcHHHHHHHHHHH
Confidence 64 222222222221 111233457777788887775
No 56
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=92.48 E-value=0.15 Score=54.29 Aligned_cols=41 Identities=27% Similarity=0.549 Sum_probs=34.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
...--..|.=|++.=-|||.+||||.. +|+ ++.||=|++|-
T Consensus 131 ~S~A~ySvv~YvLGigDRH~~NILi~~---~G~-----liHIDFG~~fg 171 (293)
T cd05168 131 ESLAGYSLICYLLQIKDRHNGNILIDN---DGH-----IIHIDFGFMLS 171 (293)
T ss_pred HHHHHHHHHHHHhhccccCCCceEEcC---CCC-----EEEEehHHhhc
Confidence 345567778899999999999999987 564 99999999997
No 57
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.73 Score=42.18 Aligned_cols=70 Identities=7% Similarity=0.143 Sum_probs=62.5
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceeeec
Q 006592 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLLTR 106 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhLvR 106 (639)
+.-..+.|+--.|.++.|.|.++.....|+.-..++.|++..+-|++|+|+.+..+.+ ..+++.+|-++.
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~ 91 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQ 91 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEe
Confidence 4556778888899999999999999999999999999999999999999999998886 788899888875
No 58
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=92.13 E-value=0.25 Score=52.50 Aligned_cols=41 Identities=29% Similarity=0.530 Sum_probs=34.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..+--..|.=|++.=-|||.|||||.. +|+ ++.||-|++|-
T Consensus 129 ~SlA~ySvv~YiLgigDRH~~NILid~---~G~-----liHIDFG~ilg 169 (289)
T cd00893 129 ESMAGYSLLCYLLQIKDRHNGNILLDS---DGH-----IIHIDFGFILD 169 (289)
T ss_pred HHHHHHHHHHHHhhccccCCCceEECC---CCC-----EEEEehHHhhC
Confidence 345566778899999999999999976 554 99999999997
No 59
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=91.39 E-value=0.73 Score=39.00 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=41.3
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----CcCCCCceee
Q 006592 46 TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 46 T~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~I~~dStLhL 104 (639)
+.+|+.+.+.|.|+.++.+|-++.-+++|+.+++-.|.++++.|+-+.. |+.+++.|-|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4578999999999999999999999999999999999999999977764 8999988764
No 60
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.01 E-value=0.49 Score=46.72 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=43.5
Q ss_pred cEEEEEeCCC----cEEEEEecCCCCHHHHHHHHHHHcCCCCCCe-EEEE-CCeEec
Q 006592 40 RRVFVQTEMG----YVLGMELDRSDNAHTVKRKLQLALDVPTEER-SLIY-GDTVLK 90 (639)
Q Consensus 40 ~qIfVKT~tG----ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQ-rLiF-gGk~Le 90 (639)
++|||+|..| .++.+.+.++.||.+|+.+|....++|...| .|.+ .+++|.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~ 57 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLS 57 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeC
Confidence 5899999999 6999999999999999999999999998774 4555 356663
No 61
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=90.76 E-value=0.36 Score=52.82 Aligned_cols=67 Identities=27% Similarity=0.330 Sum_probs=50.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHh
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYIN 374 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~ 374 (639)
...---+|.=|++.=.|||.||||+.. +|+ ++.||=|+.|- ..+++..+....+-.+|+++.++.|.
T Consensus 193 ~S~AgYsV~tYiLgIgDRHndNImi~~---~Gh-----lfHIDFG~iLg---~~~~~g~~~re~~PF~Lt~emv~vm~ 259 (354)
T cd00895 193 YSCAGCCVATYVLGICDRHNDNIMLKT---TGH-----MFHIDFGRFLG---HAQMFGNIKRDRAPFVFTSDMAYVIN 259 (354)
T ss_pred HHHHHHHHHHHHccccccCCCceeEcC---CCC-----EEEEeeHHhcC---CCcccCCCCcCCCCccccHHHHHHhc
Confidence 345556788899999999999999986 564 99999999998 44566666555455556887777664
No 62
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=90.07 E-value=0.71 Score=41.79 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=38.6
Q ss_pred EEEEEeCC-CcEEEEEec--CCCCHHHHHHHHHHHcCC--CCCCeEEEECCeEeccCC
Q 006592 41 RVFVQTEM-GYVLGMELD--RSDNAHTVKRKLQLALDV--PTEERSLIYGDTVLKNDL 93 (639)
Q Consensus 41 qIfVKT~t-Gktl~~eVd--~sdTV~~VKqkIqekeGI--P~eqQrLiFgGk~LeDd~ 93 (639)
.|.|+-.+ -.-+.++|. .+.||..||+.|.+..+= .-..+||||+|+.|.|..
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t 59 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHT 59 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccc
Confidence 34555444 334667776 889999999999999832 224578999999998764
No 63
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=89.93 E-value=0.51 Score=43.15 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=42.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE-CC-eEeccCCC-----------CcCCCCceee
Q 006592 51 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY-GD-TVLKNDLS-----------YVRHDSPLLL 104 (639)
Q Consensus 51 tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF-gG-k~LeDd~t-----------~I~~dStLhL 104 (639)
++-++.+++.||-+||++++.-.--|++.|||+- .. +.|+|..+ +.++.+++-|
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~pA~vgL 79 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQAPATVGL 79 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccccccCCCceeee
Confidence 4555999999999999999999888999999987 33 55666653 5667777766
No 64
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=89.24 E-value=0.55 Score=50.53 Aligned_cols=67 Identities=16% Similarity=0.410 Sum_probs=43.9
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHhcC
Q 006592 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQL 376 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~L 376 (639)
..--.+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-. +|. .++.+..+-.-++.+.++.+--.
T Consensus 151 S~Agysv~tYiLgigDRHn~NILid~---~G~-----l~HIDFG~il~~---~p~-~~~~~E~~PFkLT~emv~~mGg~ 217 (311)
T cd05167 151 SMAAYSLISYLLQIKDRHNGNIMIDD---DGH-----IIHIDFGFIFEI---SPG-GNLKFESAPFKLTKEMVQIMGGS 217 (311)
T ss_pred HHHHHHHHHHHhhccccCccceEEcC---CCC-----EEEEeeHHhhcc---CCC-CCCCcCCCCEeecHHHHHHhCCC
Confidence 44556677788999999999999987 564 999999999963 221 11112222223566666655433
No 65
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.30 E-value=0.73 Score=54.46 Aligned_cols=142 Identities=16% Similarity=0.252 Sum_probs=77.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHhcC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQL 376 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~L 376 (639)
..+---.+.=|++-=-|||.||||+.. .| |+|.||-|+-|-.+--.--|+. |=.-|+.|.++.+--|
T Consensus 685 qSlagYSLvcYlLQvKDRHNGNILiD~---EG-----HIIHIDFGFmLsnsPgnvgFEs-----APFKLT~EylEvmgG~ 751 (847)
T KOG0903|consen 685 QSLAGYSLVCYLLQVKDRHNGNILIDE---EG-----HIIHIDFGFMLSNSPGNVGFES-----APFKLTTEYLEVMGGL 751 (847)
T ss_pred HHHHHHHHHHHhhhcccccCCceEecC---CC-----CEEEEeeeeEecCCCCCccccc-----CchhhHHHHHHHhcCC
Confidence 344445567788888999999999955 34 5999999999874322211332 2222344444444433
Q ss_pred Ccccch---hHHHhhCCcchHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHhccccCCC--CCCChHHHHHHHHHHH
Q 006592 377 DPFGDS---GMLRLELPMIREACLRVLVICTIFLKEAAAF---GLCLADIGEMMSREFRGHA--EAPSELEFICIEARRL 448 (639)
Q Consensus 377 D~~~D~---~~Lr~~L~~lre~clr~l~i~T~lLk~~a~~---gLtl~eIg~~m~R~~~~~~--~~pS~lE~i~~~A~~~ 448 (639)
|-+.-- .++...+-.+|.-.-|+..++.+ +|.+-.+ .--...|..+..|--...- +--+-++.+|..+..+
T Consensus 752 ~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEi-Mq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~kS~~S 830 (847)
T KOG0903|consen 752 DSDMFDYFKSLMLQGFMALRKHADRIVLLVEI-MQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLISKSLDS 830 (847)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCcccccChHHHHHHHHHhcccccHHHHHHHHHHHHhhcccc
Confidence 222110 22222232466667778888877 6764433 2224678888888654321 1112334444445444
Q ss_pred Hhhc
Q 006592 449 LEES 452 (639)
Q Consensus 449 ~~~~ 452 (639)
+..|
T Consensus 831 ~~Tr 834 (847)
T KOG0903|consen 831 ITTR 834 (847)
T ss_pred hhhh
Confidence 4433
No 66
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=86.03 E-value=0.61 Score=51.06 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=43.5
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHH
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELE 371 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~le 371 (639)
...--.+|.=|++.=.|||.||||+.. +|+ ++.||-|++|- ..+++..+...-+=.+|+++.+.
T Consensus 193 ~S~AgysvvtYiLGigDRHn~NILi~~---~G~-----~~HIDFG~ilg---~~~~~~~~~~E~~PF~LT~emv~ 256 (354)
T cd05177 193 HSCAGWCVVTFILGVCDRHNDNIMLTH---SGH-----MFHIDFGKFLG---HAQTFGSIKRDRAPFIFTSEMEY 256 (354)
T ss_pred HHHHHHHHHHHHhcccCcCCCceeEcC---CCC-----EEEEehHHhcC---CCccccCCCcCCCCeeccHHHHH
Confidence 445567788899999999999999975 564 99999999997 23333332222222245665543
No 67
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=83.59 E-value=1.1 Score=48.86 Aligned_cols=67 Identities=25% Similarity=0.266 Sum_probs=45.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCC-cccccccccCCCC--CHHHHHHH
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPY-FEWIHWAQASIPF--SEDELEYI 373 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~-f~Wl~WPqA~~PF--S~e~leyI 373 (639)
..+--.+|+=|++.=.|||.||||+.. +|+ ++.||-|++|-. .++ +.. -| -..|| +++.++.+
T Consensus 193 ~S~A~ysv~~YiLgigDRH~~NILi~~---~G~-----~~HIDFG~ilg~---~~~~~~~--~~-E~~PFrLT~~mv~~m 258 (352)
T cd00891 193 YSCAGYCVATYVLGIGDRHNDNIMLTK---TGH-----LFHIDFGHFLGN---FKKKFGI--KR-ERAPFVLTPDMAYVM 258 (352)
T ss_pred hhHHHHHHHHHHccccccCCCceEECC---CCC-----EEEEehHHhhcc---CCccCCC--CC-CCCCeeecHHHHHHh
Confidence 345667788899999999999999975 564 999999999941 111 110 11 13455 67777666
Q ss_pred hcCC
Q 006592 374 NQLD 377 (639)
Q Consensus 374 ~~LD 377 (639)
-..+
T Consensus 259 Gg~~ 262 (352)
T cd00891 259 GGGD 262 (352)
T ss_pred CCCC
Confidence 5543
No 68
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=82.76 E-value=1.8 Score=47.41 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=34.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
...--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|-
T Consensus 192 ~S~A~ysvv~YiLgigDRH~~NILl~~---~G~-----l~HIDFG~~lg 232 (353)
T cd05166 192 YSCAGCCVATYVLGICDRHNDNIMLTK---SGH-----MFHIDFGKFLG 232 (353)
T ss_pred hHHHHHHHHHHHhhccccCCCceEECC---CCC-----EEEEeeHHhcc
Confidence 345567788899999999999999976 554 99999999996
No 69
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=80.97 E-value=0.82 Score=50.08 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=34.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
...--.+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 192 ~S~AgYsv~tYiLGIgDRHn~NILi~~---~Gh-----l~HIDFG~ilg 232 (353)
T cd05176 192 YSCAGCCVATYVLGICDRHNDNIMLRS---TGH-----MFHIDFGKFLG 232 (353)
T ss_pred HHHHHHHHHhhhccccCcCCcceEEcC---CCC-----EEEEeeHHhcC
Confidence 345567788899999999999999976 564 99999999996
No 70
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=80.56 E-value=0.77 Score=50.50 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=33.5
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..--.+|.=|++.=.|||.|||||.. +|+ ++.||-|++|-
T Consensus 203 S~AgYsV~tYiLGIgDRHndNImi~~---~G~-----lfHIDFG~ilg 242 (365)
T cd00894 203 SCAGYCVATFVLGIGDRHNDNIMITE---TGN-----LFHIDFGHILG 242 (365)
T ss_pred HhHHHHHHHHhccccCccccceeEcC---CCC-----EEEEeeHHhhC
Confidence 34456677799999999999999986 564 99999999996
No 71
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.25 E-value=2.2 Score=43.88 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=56.1
Q ss_pred ccCCCcEEEEE---eCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC----CCcCCCCceee
Q 006592 35 QHSGKRRVFVQ---TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL----SYVRHDSPLLL 104 (639)
Q Consensus 35 ~~sd~~qIfVK---T~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~----t~I~~dStLhL 104 (639)
+++...+.+.| |.+++.+.+-+...+||.++|.+++.++|+.+--|+++|+|..|-+.. |+|++++---|
T Consensus 139 pp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 139 PPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred CCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 35555555544 448999999999999999999999999999988999999999986643 58888854333
No 72
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=79.88 E-value=0.68 Score=50.89 Aligned_cols=40 Identities=33% Similarity=0.429 Sum_probs=34.1
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..--.+|.=|++.=-|||.||||+.. +|+ ++.||-|++|-
T Consensus 203 S~AgysvvtYiLGigDRH~~NILi~~---~G~-----l~HIDFG~ilg 242 (366)
T cd05165 203 SCAGYCVATFVLGIGDRHNDNIMVKE---TGQ-----LFHIDFGHILG 242 (366)
T ss_pred HHHHHHHHHHHhhccccCCcceEEcC---CCC-----EEEEehHHhhc
Confidence 44557788899999999999999986 564 99999999994
No 73
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=79.29 E-value=0.8 Score=50.31 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=33.7
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..--.+|.=|++.=.|||.|||||.. +|+ ++.||-|++|-
T Consensus 199 S~AgysVvtYiLGIGDRHn~NILi~~---~G~-----l~HIDFG~ilg 238 (361)
T cd05174 199 SCAGYCVATYVLGIGDRHSDNIMIRE---SGQ-----LFHIDFGHFLG 238 (361)
T ss_pred HHHHHHHHHHHhcccCcCccceeEcC---CCC-----EEEEehHHhhc
Confidence 44556788899999999999999976 554 99999999995
No 74
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=79.22 E-value=0.82 Score=50.32 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=34.5
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
...--.+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 201 ~S~AgYsV~tYiLGIgDRHndNImi~~---~G~-----l~HIDFG~iLg 241 (366)
T cd05175 201 RSCAGYCVATFILGIGDRHNSNIMVKD---DGQ-----LFHIDFGHFLD 241 (366)
T ss_pred HHHHHHHHHHHHhcccccCccceeEcC---CCC-----EEEEehHHhhc
Confidence 344556788899999999999999986 564 99999999995
No 75
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=78.99 E-value=0.83 Score=50.16 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=33.8
Q ss_pred hhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 298 AVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 298 evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..--.+|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 199 S~AgYsvvtYILGIGDRHn~NILi~~---~G~-----l~HIDFG~ilg 238 (362)
T cd05173 199 SCAGYCVATYVLGIGDRHSDNIMVRK---NGQ-----LFHIDFGHILG 238 (362)
T ss_pred HHHHHHHHHHHhhccccCCCceEECC---CCC-----EEEEehHHhhc
Confidence 44556788899999999999999975 564 99999999995
No 76
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=77.08 E-value=0.95 Score=49.42 Aligned_cols=41 Identities=32% Similarity=0.420 Sum_probs=35.2
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
....-..|.=|++.=.|||.||||+.. +|+ ++.||=|++|-
T Consensus 192 ~S~A~ysvv~YiLGigDRH~~NILi~~---~G~-----~~HIDFG~ilg 232 (350)
T cd00896 192 KSCAGYCVITYILGVGDRHLDNLLLTK---DGK-----LFHIDFGYILG 232 (350)
T ss_pred HHHHHHHHHHHHhcccccCCCcEEEcC---CCC-----EEEEEhHHhhC
Confidence 445667888899999999999999975 564 99999999996
No 77
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=76.91 E-value=18 Score=30.66 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCC-eEEEE--CCeEeccCC--C----CcCCCCceee
Q 006592 37 SGKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEE-RSLIY--GDTVLKNDL--S----YVRHDSPLLL 104 (639)
Q Consensus 37 sd~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eq-QrLiF--gGk~LeDd~--t----~I~~dStLhL 104 (639)
++--+|-||..+|+.+.-.+.+++||..|.+-|......+... -.|+- --+.|.++. + ++...++|+|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4456899999999999999999999999999998887666544 57764 356665443 2 5556666665
No 78
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=76.82 E-value=1.4 Score=49.62 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=33.5
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEee-cC
Q 006592 296 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPI-DH 340 (639)
Q Consensus 296 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pI-DH 340 (639)
..++.|..+|.++|+|+|.|+.|+=+-..+ .+.++|.|+ |-
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~----~~~~~LAPaYDi 368 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSD----GRPLALAPVYDM 368 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECC----CCCeeecchhhc
Confidence 356778899999999999999999887731 246899998 76
No 79
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=74.87 E-value=1.4 Score=52.43 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=34.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
...---.|+-|++.=.|||.|||||.. +|. |+-||-|+.|-+
T Consensus 1135 ~S~AGYsViTYILgIgDRHngNILId~---dGh-----LfHIDFGFILg~ 1176 (1374)
T PTZ00303 1135 ASAKLFLLLNYIFSIGDRHKGNVLIGT---NGA-----LLHIDFRFIFSE 1176 (1374)
T ss_pred HHHHHHHHHHHHhccCcccCCceeEcC---CCC-----EEEEecceeecC
Confidence 344455678899999999999999988 564 999999999984
No 80
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=74.12 E-value=0.55 Score=51.03 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=54.0
Q ss_pred cEEEEEeCCC--cEEEEEecCCCCHHHHHHHHHHHc-CCC-CCCeEEEECCeEeccCCC------CcCCCCceeeecccc
Q 006592 40 RRVFVQTEMG--YVLGMELDRSDNAHTVKRKLQLAL-DVP-TEERSLIYGDTVLKNDLS------YVRHDSPLLLTRNCM 109 (639)
Q Consensus 40 ~qIfVKT~tG--ktl~~eVd~sdTV~~VKqkIqeke-GIP-~eqQrLiFgGk~LeDd~t------~I~~dStLhLvRs~I 109 (639)
..++||..+- +-+.|..+...||+.||..++... +-| +.+|||||.|+.|.|..| +-....++|||.+
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn-- 87 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN-- 87 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC--
Confidence 4677777654 577888899999999999988874 222 268999999999999886 2234567788752
Q ss_pred CCCCCCC
Q 006592 110 HRSSSTP 116 (639)
Q Consensus 110 hRSsStP 116 (639)
+|.+.++
T Consensus 88 sk~v~~~ 94 (391)
T KOG4583|consen 88 SKEVVTQ 94 (391)
T ss_pred CCCCCCc
Confidence 4444433
No 81
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=72.20 E-value=11 Score=33.71 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=34.1
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCC
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTE 78 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~e 78 (639)
..+|+..|+++.|.+.++.++..+++.|.+++|+..+
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 4678999999999999999999999999999999864
No 82
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=71.93 E-value=16 Score=33.38 Aligned_cols=86 Identities=6% Similarity=0.035 Sum_probs=62.7
Q ss_pred CCCCCCCCCcccccccCC-CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCC----C
Q 006592 21 GINGEHGGSKRMESQHSG-KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLS----Y 95 (639)
Q Consensus 21 ~~~~~~~~~~~~~~~~sd-~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t----~ 95 (639)
+.+.|+..+.....+++- -..+.|=-..|.++-|.|..+.+-..+-.-...+.|-....-|++|+|+.++-+.+ .
T Consensus 5 ~~~~e~kt~~~p~vkp~t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dld 84 (103)
T COG5227 5 DSGSEFKTNENPLVKPITKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLD 84 (103)
T ss_pred ccchhhccccCccccccccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcC
Confidence 345666665555555443 23344444589999999999999988888888888988889999999999987776 5
Q ss_pred cCCCCceeeec
Q 006592 96 VRHDSPLLLTR 106 (639)
Q Consensus 96 I~~dStLhLvR 106 (639)
.+++..|..++
T Consensus 85 mEdnd~iEav~ 95 (103)
T COG5227 85 MEDNDEIEAVT 95 (103)
T ss_pred CccchHHHHHH
Confidence 66666665554
No 83
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=71.34 E-value=2 Score=42.85 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=45.4
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCC--CHHHHHHHh
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPF--SEDELEYIN 374 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PF--S~e~leyI~ 374 (639)
..+--..++-|++.=.|||.+|||+.+ +|+ ++.||=|++|-. .+.+. =+.-..|| +++.++.+-
T Consensus 91 ~SlA~~s~~~YilglgDRh~~NIli~~---~G~-----v~hIDfg~~~~~---~~~~~---~~~e~vPFRLT~~~~~~lg 156 (202)
T smart00146 91 RSCAGYSVITYILGLGDRHNDNIMLDK---TGH-----LFHIDFGFILGN---GPKLF---GFPERVPFRLTPEMVDVMG 156 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeC---CCC-----EEEEechhhhCc---cccCC---CCCCCCCeecCHHHHHHhC
Confidence 456678899999999999999999984 564 999999999973 23221 11123444 666666654
No 84
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=70.71 E-value=10 Score=32.43 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=44.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCe------EEE-ECCeEeccCCC----CcCCCCceee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEER------SLI-YGDTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQ------rLi-FgGk~LeDd~t----~I~~dStLhL 104 (639)
.+|.|....|+.+-+.+....+|..+...|.+..+++..+. +|. -+|..|.++.+ +|.+|++|+|
T Consensus 3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 46777776679999999999999999999999988754332 343 46889988886 9999999987
No 85
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=70.18 E-value=5.6 Score=41.61 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=25.0
Q ss_pred hhhhhhccccceEeecCCC----------CCCceEEeee
Q 006592 296 VAAVHRIGILDIRILNTDR----------HAGNLLVKKF 324 (639)
Q Consensus 296 v~evhKIaILDiri~NtDR----------h~GNiLV~~~ 324 (639)
..++-||-+||+.|+|.|| |..|||++..
T Consensus 121 ~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~ 159 (238)
T cd05124 121 LIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDI 159 (238)
T ss_pred HHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcc
Confidence 3678999999999999999 5678998874
No 86
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=69.69 E-value=2.5 Score=44.22 Aligned_cols=82 Identities=20% Similarity=0.367 Sum_probs=53.1
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCC--CHHHHHHHh
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPF--SEDELEYIN 374 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PF--S~e~leyI~ 374 (639)
..+--.+++=|++.=.|||.+|||+... +|+ ++.||-|+||-.. ..+- ..|. ..|| +++.++.+-
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~~--tG~-----v~HIDfg~~f~~~---~~~~--~~pE-~VPFRLT~~~~~~lG 237 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDRL--TGK-----VIHIDFGDCFEVA---MHRE--KFPE-KVPFRLTRMLVNALG 237 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEcC--CCC-----EEEEecHHHHhhc---cccC--CCCC-cCCcccCHHHHHHhC
Confidence 4567788889999999999999999884 343 9999999998421 1000 0122 2444 677777665
Q ss_pred cCCcccchhHHHhhCCcchHHHHHHHH
Q 006592 375 QLDPFGDSGMLRLELPMIREACLRVLV 401 (639)
Q Consensus 375 ~LD~~~D~~~Lr~~L~~lre~clr~l~ 401 (639)
....+ + ..+..|.++++
T Consensus 238 ~~g~~---------G-~F~~~~~~~~~ 254 (280)
T cd05169 238 VSGIE---------G-TFRTTCEDVMN 254 (280)
T ss_pred CCCCC---------C-chHHHHHHHHH
Confidence 44221 2 25666666664
No 87
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=69.03 E-value=29 Score=29.55 Aligned_cols=54 Identities=19% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEecc
Q 006592 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKN 91 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~LeD 91 (639)
+--+|-||..+|+.+...+..++||++|.+-|....+.....-.|+-. -+.|.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~ 58 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTK 58 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCcc
Confidence 345899999999999999999999999999996666665556666543 455544
No 88
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.56 E-value=5.1 Score=47.19 Aligned_cols=45 Identities=33% Similarity=0.479 Sum_probs=37.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPY 352 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~ 352 (639)
...---+|.=|+++=.|||.||+|+.+ +|+ +..||-|+.|- -||+
T Consensus 684 kScaGYsVitYILGvGDRhldNLllT~---dGk-----~FHiDFgyIlG---RDPK 728 (843)
T KOG0906|consen 684 KSCAGYSVITYILGVGDRHLDNLLLTK---DGK-----LFHIDFGYILG---RDPK 728 (843)
T ss_pred HhhccceeeeeeecccCCCcCceEEcc---CCc-----EEEEeeeeecc---CCCC
Confidence 344556788899999999999999999 675 99999999998 5655
No 89
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.28 E-value=3.7 Score=35.34 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=40.5
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL 93 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~ 93 (639)
+|.+.---||+..+...+.+||+++|+-|+...|..++...|--....++|.+
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I 55 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHI 55 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhccc
Confidence 34555567999999999999999999999999998877766543344445544
No 90
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=62.27 E-value=3.4 Score=52.17 Aligned_cols=42 Identities=24% Similarity=0.542 Sum_probs=34.6
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
....--+|+-|++.=-|||.||||+.. .| |++.||-|+.|-.
T Consensus 1642 ~S~A~Ysv~s~lLq~KDRHNGNim~Dd---~G-----~~iHIDFGf~~e~ 1683 (1803)
T KOG0902|consen 1642 RSMAGYSVLSYLLQIKDRHNGNIMIDD---QG-----HIIHIDFGFMFES 1683 (1803)
T ss_pred HHHHHHHHHHHHcccccccCCceeEcc---CC-----CEEEEeeeeEEec
Confidence 345556788899999999999999966 45 5999999998863
No 91
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=59.55 E-value=25 Score=29.36 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=41.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeeec
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLvR 106 (639)
|+|+| +|+.+ +++...|+..||+++.. +.--+|++|-+..+|.. +++++.|.|++
T Consensus 1 M~I~v---N~k~~--~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~-L~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKV---NEKEI--ETEENTTLFELRKESKP------DADIVILNGFPTKEDIE-LKEGDEVFLIK 55 (57)
T ss_pred CEEEE---CCEEE--EcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccc-cCCCCEEEEEe
Confidence 56777 56665 56677899999987543 22277999999988876 88888888876
No 92
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=59.26 E-value=6.5 Score=40.56 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=35.8
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
..+--.+++=|++.=.|||.+|||+... +|+ ++-||=|.+|-.
T Consensus 126 ~S~A~~S~~~YilglgDRH~~NIli~~~--tG~-----v~HIDfg~~f~~ 168 (235)
T cd05172 126 KSLAAMCVSHWILGIGDRHLSNFLVDLE--TGG-----LVGIDFGHAFGT 168 (235)
T ss_pred HHHHHHHHHhheeeccCCCcccEEEECC--CCc-----EEEEeeHhhhcc
Confidence 4566678888999999999999999863 343 999999999973
No 93
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=59.11 E-value=5 Score=42.24 Aligned_cols=42 Identities=31% Similarity=0.433 Sum_probs=35.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..+--+.++=|++.=.|||.+|||+... +|+ ++.||-|.||-
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~--tG~-----v~hiDf~~~f~ 212 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK--TAE-----VVHIDLGIAFE 212 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC--cCc-----EEEEechhhhc
Confidence 4567788889999999999999999863 343 99999999996
No 94
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=58.67 E-value=4.8 Score=41.49 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=35.8
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
..+--.+++=|++.=.|||.+|||+... +| +++-||=|.+|-.
T Consensus 129 ~SlA~~s~~~YilgigDRh~~NIli~~~--tG-----~~~HIDfg~~~~~ 171 (237)
T cd00892 129 RSTAVMSMVGYILGLGDRHGENILFDSN--TG-----DVVHVDFNCLFDK 171 (237)
T ss_pred HHHHHHHHHHHHhccCCCCcccEEEEcC--CC-----cEEEEehHhhhcc
Confidence 4566677888999999999999999874 34 3999999999974
No 95
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=58.29 E-value=28 Score=30.99 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=33.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006592 51 VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 86 (639)
Q Consensus 51 tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG 86 (639)
++.|.|.++-+..+|..+|.+++.+|+++-.|-|.+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 999999999999999999999999998888898874
No 96
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=57.64 E-value=16 Score=30.48 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.3
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC-CCeEEEE
Q 006592 44 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT-EERSLIY 84 (639)
Q Consensus 44 VKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~-eqQrLiF 84 (639)
|+.++|.+.+++|+++.|+.++=++|..+.||.. +--.|.|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 6788999999999999999999999999999963 2346666
No 97
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=57.06 E-value=13 Score=32.07 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=38.3
Q ss_pred ecCCCCHHHHHHHHHHHcCC-CCCCeEEEECCeEeccCCC-----CcCCCCceeeec
Q 006592 56 LDRSDNAHTVKRKLQLALDV-PTEERSLIYGDTVLKNDLS-----YVRHDSPLLLTR 106 (639)
Q Consensus 56 Vd~sdTV~~VKqkIqekeGI-P~eqQrLiFgGk~LeDd~t-----~I~~dStLhLvR 106 (639)
|.++++|.+|++-|...... .-.--.|.++|+.|++... ++.++++|+|+-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56889999999998887432 2234578889999976542 788899999873
No 98
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=57.00 E-value=7.7 Score=44.93 Aligned_cols=38 Identities=37% Similarity=0.603 Sum_probs=31.1
Q ss_pred ccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 304 ILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 304 ILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
||.-=...+|=|.|||||++.+ .+..+++=.|||++--
T Consensus 317 If~~GffHaDPHPGNilv~~~~----~~~~~ivllDhGl~~~ 354 (538)
T KOG1235|consen 317 IFKTGFFHADPHPGNILVRPNP----EGDEEIVLLDHGLYAV 354 (538)
T ss_pred HHhcCCccCCCCCCcEEEecCC----CCCccEEEEccccccc
Confidence 6677789999999999999742 3556788899999876
No 99
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=55.51 E-value=8.8 Score=46.61 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=30.9
Q ss_pred cccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 303 GILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 303 aILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
+|--|+++=.|||.+||||+. +|. |..||-|=.|-+
T Consensus 919 cVATyVLGIgDRHsDNIMvke---~Gq-----lFHIDFGHiLGh 954 (1076)
T KOG0904|consen 919 CVATYVLGIGDRHSDNIMVKE---TGQ-----LFHIDFGHILGH 954 (1076)
T ss_pred eeeeeeecccccccCceEEec---cCc-----EEEEEhhhhhcc
Confidence 455689999999999999998 564 999999988875
No 100
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=54.20 E-value=31 Score=33.10 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=35.7
Q ss_pred CcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCC
Q 006592 39 KRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVP 76 (639)
Q Consensus 39 ~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP 76 (639)
.+.|.|...+|.+..+.++++.||.+|-+.|.++.||+
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999999999999995
No 101
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=53.78 E-value=55 Score=27.44 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=36.8
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD 86 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG 86 (639)
.|.|+. .|.+..|.|.++.|-.+|+++|+.+++++.+...|-|-+
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 345554 678889999999999999999999999886667777763
No 102
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=53.70 E-value=61 Score=29.17 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=36.1
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY 84 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF 84 (639)
.|.|-..+|.+-++.|+.++|+.+|=+.+.++.+...+.-.-+|
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~Lv 47 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLV 47 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 56777789999999999999999999999999877655443334
No 103
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=53.34 E-value=6.3 Score=39.86 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=45.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccc-cCCCCCHHHHHHHhc
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQ-ASIPFSEDELEYINQ 375 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPq-A~~PFS~e~leyI~~ 375 (639)
..+--..++=|++.=.|||.+|||+... +| +++-||=|++|-. .+.+.= |. .-.-++++..+.+-.
T Consensus 118 ~SlA~~s~~~YilglgDRh~~NIli~~~--~G-----~~~hIDfg~~~~~---~~~~~~---~e~vPFRLT~~~~~~~g~ 184 (219)
T cd00142 118 SSLAGYSVAGYILGIGDRHPDNIMIDLD--TG-----KLFHIDFGFIFGK---RKKFLG---RERVPFRLTPDLVNALGT 184 (219)
T ss_pred HHHHHHHHHHHHhccCCCCCccEEEECC--CC-----eEEEEeeHHhhCc---CcCCCC---CCCCCEeccHHHHHHhCC
Confidence 4566678889999999999999999884 34 4999999999962 222111 11 123346766666654
Q ss_pred C
Q 006592 376 L 376 (639)
Q Consensus 376 L 376 (639)
.
T Consensus 185 ~ 185 (219)
T cd00142 185 G 185 (219)
T ss_pred c
Confidence 4
No 104
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=53.14 E-value=90 Score=26.85 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=45.6
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEeccC---CC----CcCCCCceee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKND---LS----YVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~LeDd---~t----~I~~dStLhL 104 (639)
-+|-||..+|+.+.-....++|+.+|.+-|+...+.+ ..-.|+-. -+.+.++ .+ ++.+-++|.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4789999999999999999999999999998665433 44566544 5556432 22 5555555554
No 105
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=51.08 E-value=11 Score=47.03 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 302 IGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 302 IaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
-+|--|+++=+|||.+|||.++ .| |+..||-|=-|-
T Consensus 1191 ~cVaTYVLGIcDRHNDNIMl~~---sG-----HmFHIDFGKFLG 1226 (1639)
T KOG0905|consen 1191 WCVATYVLGICDRHNDNIMLTK---SG-----HMFHIDFGKFLG 1226 (1639)
T ss_pred ceeeeEeeecccccCCceEEec---cC-----cEEEEehhhhcc
Confidence 4677899999999999999999 56 499999997665
No 106
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=51.05 E-value=25 Score=40.54 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=44.9
Q ss_pred eEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCCCHHHHHHHhcCCcccchhHHH
Q 006592 307 IRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPFSEDELEYINQLDPFGDSGMLR 386 (639)
Q Consensus 307 iri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PFS~e~leyI~~LD~~~D~~~Lr 386 (639)
-=.+=+|=|.|||+|.. +|+ ++-+|||+.=+ -++.+++.+ .+.+-.+..-|.++-++.+.
T Consensus 284 dgffHaDpHpGNi~v~~---~g~-----i~~lDfGi~g~---l~~~~r~~l---------~~~~~a~~~rD~~~v~~~~~ 343 (517)
T COG0661 284 DGFFHADPHPGNILVRS---DGR-----IVLLDFGIVGR---LDPKFRRYL---------AELLLAFLNRDYDRVAELHV 343 (517)
T ss_pred cCccccCCCccceEEec---CCc-----EEEEcCcceec---CCHHHHHHH---------HHHHHHHHhhCHHHHHHHHH
Confidence 34567999999999988 453 99999999877 344444331 22223333335555455555
Q ss_pred hhCCcchHHHHHHHHHHHH
Q 006592 387 LELPMIREACLRVLVICTI 405 (639)
Q Consensus 387 ~~L~~lre~clr~l~i~T~ 405 (639)
..++.=...+...+.....
T Consensus 344 ~~G~~~~~~~~~~~~~~i~ 362 (517)
T COG0661 344 ELGYVPPDTDRDPLAAAIR 362 (517)
T ss_pred HhCCCCCccchHHHHHHHH
Confidence 4443222344444444433
No 107
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=49.07 E-value=8.1 Score=39.42 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=35.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
..+--..++=|++.=.|||.+|||+... +|+ ++-||=|.+|-.
T Consensus 121 ~SlA~~s~~~YvlglgDRh~~NIli~~~--tG~-----v~hIDf~~~~~~ 163 (222)
T cd05164 121 RSTAVMSIVGYILGLGDRHLDNILIDRE--TGE-----VVHIDFGCIFEK 163 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCceEEEECC--CCc-----EEEEccHHhhcc
Confidence 3556678889999999999999999884 343 899999999974
No 108
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=48.12 E-value=1.2e+02 Score=25.54 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=39.2
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEecc
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKN 91 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~LeD 91 (639)
+|-||..+|+.+.-....++||++|.+=|...... ...-+|+.. -+.+.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~ 55 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTD 55 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCC
Confidence 68899999999999999999999999988765443 355667654 566654
No 109
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=48.02 E-value=9.2 Score=40.94 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=45.9
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCccCCCCCcccccccccCCCC--CHHHHHHHh
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPENLEDPYFEWIHWAQASIPF--SEDELEYIN 374 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~~~~d~~f~Wl~WPqA~~PF--S~e~leyI~ 374 (639)
..+--++++=|++.=.|||.+|||+... +|+ ++.||=|.||-... .+..|.. .|| ++...+.+-
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~~--tG~-----v~hiDf~~~f~~~~------~l~~pE~-VPFRLT~~~~~~lg 264 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDLK--TGE-----VVHIDYNVCFEKGK------SLRIPEK-VPFRMTQNIETALG 264 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEcC--CCc-----EEEEeeHhhhcccC------CCCCCCC-CCeeeCHHHHHHhC
Confidence 4567788889999999999999999864 343 99999999995321 1223333 444 566666654
Q ss_pred cC
Q 006592 375 QL 376 (639)
Q Consensus 375 ~L 376 (639)
..
T Consensus 265 ~~ 266 (307)
T cd05170 265 LT 266 (307)
T ss_pred CC
Confidence 33
No 110
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=46.03 E-value=73 Score=26.45 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=38.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHHcCC----CCCCeEEEECCeEeccCCCCcCCCCceeee
Q 006592 51 VLGMELDRSDNAHTVKRKLQLALDV----PTEERSLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 51 tl~~eVd~sdTV~~VKqkIqekeGI----P~eqQrLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
...++++...||.+|.+++.+..+- ....-.+..+|+....+ +-+++++.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~-~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD-TPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC-cccCCCCEEEEe
Confidence 4667887889999999999987642 11233555578777643 458899998886
No 111
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=45.65 E-value=1.5e+02 Score=26.15 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=42.5
Q ss_pred CCcEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC--eEec
Q 006592 38 GKRRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD--TVLK 90 (639)
Q Consensus 38 d~~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG--k~Le 90 (639)
+--+|-||..+|+.+.-....++||++|..=|.. .+..++..+|+.+= +.+.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~ 56 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLP 56 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCcccc
Confidence 3468999999999999999999999999998864 44555788998874 6664
No 112
>smart00455 RBD Raf-like Ras-binding domain.
Probab=45.59 E-value=68 Score=27.33 Aligned_cols=49 Identities=8% Similarity=-0.106 Sum_probs=40.6
Q ss_pred EEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECC--eEecc
Q 006592 43 FVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGD--TVLKN 91 (639)
Q Consensus 43 fVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgG--k~LeD 91 (639)
.|=..+|+...+.|.|+.||.++=+++-++.|+.+++-.+...| +.|+-
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl 53 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDL 53 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceec
Confidence 34567899999999999999999999999999998888887743 44543
No 113
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=44.07 E-value=1.1e+02 Score=25.60 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=40.1
Q ss_pred cEEEEEeCCCc--EEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeeec
Q 006592 40 RRVFVQTEMGY--VLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 106 (639)
Q Consensus 40 ~qIfVKT~tGk--tl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLvR 106 (639)
|.|+| .|+ ...++++...||.++-++ .+++.+.-.+..+|..+..+ +.+++++.|-++.
T Consensus 5 m~v~v---ng~~~~~~~~~~~~~tv~~ll~~----l~~~~~~v~v~vNg~iv~~~-~~l~~gD~Veii~ 65 (70)
T PRK08364 5 IRVKV---IGRGIEKEIEWRKGMKVADILRA----VGFNTESAIAKVNGKVALED-DPVKDGDYVEVIP 65 (70)
T ss_pred EEEEE---eccccceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCC-cCcCCCCEEEEEc
Confidence 34444 455 667888888999988766 47775444555677776443 4488888888764
No 114
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=42.31 E-value=29 Score=41.54 Aligned_cols=42 Identities=7% Similarity=0.198 Sum_probs=38.1
Q ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCe
Q 006592 46 TEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDT 87 (639)
Q Consensus 46 T~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk 87 (639)
+.++..+.+.|+++.|++.++.+|++..|||.+.|.|+|.+.
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~ 362 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGG 362 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecC
Confidence 347788899999999999999999999999999999999754
No 115
>PRK06437 hypothetical protein; Provisional
Probab=40.98 E-value=1.4e+02 Score=25.02 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=42.6
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceeeec
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLLTR 106 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhLvR 106 (639)
|+|+ .|+.-.++++...||.+|=++ +|++++.--+..+|..+..+ +-+++++.|-+++
T Consensus 5 ~~v~--g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~-~~L~dgD~Veiv~ 62 (67)
T PRK06437 5 IRVK--GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLED-HNVKKEDDVLILE 62 (67)
T ss_pred EEec--CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCc-eEcCCCCEEEEEe
Confidence 4454 567788888888898877544 68887666677788888744 3488888888864
No 116
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=40.52 E-value=67 Score=33.48 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=41.7
Q ss_pred EecCCCCHHHHHHHHHHHcCCCCCCeEE-EECC-----eEeccCCC-----CcCCCCceeeec
Q 006592 55 ELDRSDNAHTVKRKLQLALDVPTEERSL-IYGD-----TVLKNDLS-----YVRHDSPLLLTR 106 (639)
Q Consensus 55 eVd~sdTV~~VKqkIqekeGIP~eqQrL-iFgG-----k~LeDd~t-----~I~~dStLhLvR 106 (639)
...+++||.++|.|+....|.+++.-+| +|+| -.|.|+.. +..++--||++-
T Consensus 18 r~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 18 RLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 4568999999999999999999999888 6764 34554432 678888899986
No 117
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=40.48 E-value=1.9e+02 Score=25.79 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC--CeEeccC---CC----CcCCCCceee
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG--DTVLKND---LS----YVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg--Gk~LeDd---~t----~I~~dStLhL 104 (639)
-+|-||..+|+.+.-....++++.+|-.=|+. .|.+++...|+-+ =+.+..+ .+ |+..-+||.+
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 47999999999999999999999999887776 6778888899866 4444322 12 5555555554
No 118
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=38.01 E-value=77 Score=26.37 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=33.4
Q ss_pred EEEEeCCCcEEEEEec-CCCCHHHHHHHHHHHcCCCCCCeEEEECC
Q 006592 42 VFVQTEMGYVLGMELD-RSDNAHTVKRKLQLALDVPTEERSLIYGD 86 (639)
Q Consensus 42 IfVKT~tGktl~~eVd-~sdTV~~VKqkIqekeGIP~eqQrLiFgG 86 (639)
|.|+. .|.+..+.+. ++.|..+|+++|.++++++...-.|-|-+
T Consensus 3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 34443 3578888888 99999999999999999876455555544
No 119
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.74 E-value=20 Score=37.37 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=31.3
Q ss_pred EEeecCccccCccCCCCC--------ccccccc-ccCCCCCHHHHHHHhcCC
Q 006592 335 LVPIDHGLCLPENLEDPY--------FEWIHWA-QASIPFSEDELEYINQLD 377 (639)
Q Consensus 335 L~pIDHGlcLP~~~~d~~--------f~Wl~WP-qA~~PFS~e~leyI~~LD 377 (639)
-++|.||+.+|+.+...+ +.|..=. .+|.||++..+..+..|.
T Consensus 107 ~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~ 158 (230)
T PHA02537 107 EYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLT 158 (230)
T ss_pred HHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 478999999998776433 4565443 458999998887776663
No 120
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=36.77 E-value=2e+02 Score=25.02 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred cEEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCC-CCCeEEE--ECCeEeccC
Q 006592 40 RRVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVP-TEERSLI--YGDTVLKND 92 (639)
Q Consensus 40 ~qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP-~eqQrLi--FgGk~LeDd 92 (639)
-+|-||..+|+.+...+..++||.+|.+=|....+.+ .....|+ |=.+.|.|+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~ 60 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE 60 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC
Confidence 4788999999999999999999999999888765322 2345665 336667554
No 121
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=33.63 E-value=1.1e+02 Score=26.53 Aligned_cols=44 Identities=11% Similarity=-0.092 Sum_probs=38.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG 85 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg 85 (639)
+.|=..+|..-.+.|.+++||.++=.++-++-|+.++.-.|.+.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 34556789999999999999999999999999999888877654
No 122
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=33.05 E-value=37 Score=34.52 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHcCCCCC
Q 006592 49 GYVLGMELDRSDNAHTVKRKLQLALDVPTE 78 (639)
Q Consensus 49 Gktl~~eVd~sdTV~~VKqkIqekeGIP~e 78 (639)
|-.|.|-|.++.|..++|+||++++|++..
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 556777999999999999999999999853
No 123
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=32.21 E-value=1.8e+02 Score=24.39 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=37.5
Q ss_pred EEEEeCCCc----EEEEEecCCCCHHHHHHHHHHHcCCCC--CCeEEE-EC-----CeEeccCCC
Q 006592 42 VFVQTEMGY----VLGMELDRSDNAHTVKRKLQLALDVPT--EERSLI-YG-----DTVLKNDLS 94 (639)
Q Consensus 42 IfVKT~tGk----tl~~eVd~sdTV~~VKqkIqekeGIP~--eqQrLi-Fg-----Gk~LeDd~t 94 (639)
|-|=+..+. .-+|.|.+++|+.+|=+.+.++++++. .+-.|+ +. .+.|.++.+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~ 69 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDEC 69 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSB
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCc
Confidence 344445666 888999999999999999999999932 344563 21 456666654
No 124
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=32.03 E-value=1.2e+02 Score=25.71 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=36.7
Q ss_pred CC-cEEEEEecCCCCHHHHHHHHHHHcC-CCCC-Ce-EEEECCeEeccCCCCcCCCCceeee
Q 006592 48 MG-YVLGMELDRSDNAHTVKRKLQLALD-VPTE-ER-SLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 48 tG-ktl~~eVd~sdTV~~VKqkIqekeG-IP~e-qQ-rLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
.| +...+++....||++|++.|..... +... .. .+..+++...+ .+-++++++|-++
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-~~~l~dgDeVai~ 76 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-SAALKDGDELAII 76 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-CcCcCCCCEEEEe
Confidence 45 5677788889999999999977651 1100 11 24456666543 3458888888775
No 125
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=31.15 E-value=86 Score=28.41 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=36.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE--C--Ce-EeccCC-C----CcCCCCceee-ecc
Q 006592 50 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY--G--DT-VLKNDL-S----YVRHDSPLLL-TRN 107 (639)
Q Consensus 50 ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF--g--Gk-~LeDd~-t----~I~~dStLhL-vRs 107 (639)
.+++-.+.+.|||+.|+..+.+.+.| .++-||-- . +. .|.+.. | +|.+|-+|-+ .|+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 37778889999999999999999999 57789832 2 22 354433 3 7777877777 653
No 126
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=31.03 E-value=1.3e+02 Score=26.58 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=31.4
Q ss_pred EEeC-CCcEEEEEecCCCCHHHHHHHHHHHcCCCC-CCeEEEE
Q 006592 44 VQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPT-EERSLIY 84 (639)
Q Consensus 44 VKT~-tGktl~~eVd~sdTV~~VKqkIqekeGIP~-eqQrLiF 84 (639)
||.. .|-++.|.+.++.+..+|+++|++++++.. ..-.|-|
T Consensus 3 vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY 45 (82)
T cd06407 3 VKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY 45 (82)
T ss_pred EEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence 4433 667888899999999999999999999863 2334444
No 127
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.58 E-value=1.5e+02 Score=27.00 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=34.6
Q ss_pred EEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEE
Q 006592 44 VQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIY 84 (639)
Q Consensus 44 VKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiF 84 (639)
++...|.+-.+.|+++.+-.++++++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 57789999999999999999999999999998855 45543
No 128
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=30.29 E-value=25 Score=36.65 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=34.7
Q ss_pred hhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 297 AAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 297 ~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
..+--+.++=|+++=.|||.+|||+... .|+ ++.||-|.+|-
T Consensus 144 ~s~A~~s~~gYilglgdRh~~nili~~~--tG~-----v~hiDf~~~f~ 185 (253)
T cd05163 144 YQLALLSFMTYILSINNRNPDKIFISRD--TGN-----VYQSDLLPSIN 185 (253)
T ss_pred HHHHHHHHHHHHhcCCCCCchhEEEEcC--CCc-----EEEEeeeeeec
Confidence 4566788889999999999999999874 343 89999998874
No 129
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=29.20 E-value=22 Score=38.00 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=61.5
Q ss_pred cccc--cceEEEEEeCCC--CeEEEEeCCCCCCCCCCCCCcccccccCCCCCCCccccCCcchhhhhhhhhcC-CCCCCC
Q 006592 166 VHSG--LGGAYYFRNCAG--ENVAIVKPTDEEPYAPNNPKGFVGSALGQPGLKRSVRVGETGFREVAAYLLDY-DHFANV 240 (639)
Q Consensus 166 i~~G--SgGsYf~~n~~G--k~vaVFKP~DEEP~a~nNPk~f~~~~~g~~g~krGtlvGe~a~REVAAYLLD~-~gf~~V 240 (639)
+..| |||.||+..-+| ..++|.|+..- -..|+=||+|-. .| --|
T Consensus 33 s~~g~ns~gv~fv~~f~~~~~~avViK~s~t------------------------------~~~E~~~s~La~~Lg-v~~ 81 (275)
T PF09192_consen 33 SEHGVNSGGVFFVATFSGSKEEAVVIKFSST------------------------------IQQEVFASELARWLG-VPT 81 (275)
T ss_dssp EEE-STTS-EEEEEETTE----EEEEE--TT------------------------------HHHHHHHHHHHHHCT----
T ss_pred hccccCCCCEEEEEEcCCCceEEEEEecCCc------------------------------hHHHHHHHHHHHHhC-CCC
Confidence 3445 999999997766 45888886411 257888888875 43 346
Q ss_pred CcceEEEeeccccccCCC-CCcccccccCC--------CCccceeeecccCCCCCCCCCC-CCCC--------hhhhhhc
Q 006592 241 PCTALVKVTHEIFNINNG-VNGNKIRKRKQ--------VSKIASLQQFIPHDFDASDHGT-SSFP--------VAAVHRI 302 (639)
Q Consensus 241 P~T~lV~~~hp~Fn~~~~-~~~~~~~~~~~--------p~KiGSlQ~FV~~d~~a~d~g~-~~F~--------v~evhKI 302 (639)
|--.+|+.+.+-|.--.. ....+...+.+ ..-.==++.||++. .-.++.. ..|. ..++-||
T Consensus 82 P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~~~~~~~~LG~i 160 (275)
T PF09192_consen 82 PQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKSGEKRLEQLGRI 160 (275)
T ss_dssp --EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS-HHHHHHHHHH
T ss_pred CceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcchHHHHHHHHHhH
Confidence 666667654443311000 00000000111 01111245566531 1122221 1232 3678999
Q ss_pred cccceEeecCCCCC------------CceEEeeecCCCCCcceEEEeecCcccc
Q 006592 303 GILDIRILNTDRHA------------GNLLVKKFEGTGSFGQVELVPIDHGLCL 344 (639)
Q Consensus 303 aILDiri~NtDRh~------------GNiLV~~~~~~g~~g~~~L~pIDHGlcL 344 (639)
.+||+.++|.||-. .|||+...+. | ..+..||..++-
T Consensus 161 i~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~-~----~~~~~i~~~i~~ 209 (275)
T PF09192_consen 161 IAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPN-G----WYFSLIDSNITC 209 (275)
T ss_dssp HHHHHHHT--SSS----SSS-S---GGGEEEESB---T----T-EEE-S-----
T ss_pred HhhhhhhcCcccCcccccccCCCCChhheEEecccc-c----ceeeeccccccc
Confidence 99999999999976 5788866431 2 346777777653
No 130
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=28.06 E-value=91 Score=28.27 Aligned_cols=41 Identities=5% Similarity=0.056 Sum_probs=35.0
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEE
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSL 82 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrL 82 (639)
|-|--.+|.++.+.|..++|...|=+.++.+.|+|.+-+..
T Consensus 4 L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 4 LRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 44445689999999999999999999999999999766544
No 131
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=27.82 E-value=2.6e+02 Score=23.75 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=25.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHcCCC
Q 006592 49 GYVLGMELDRSDNAHTVKRKLQLALDVP 76 (639)
Q Consensus 49 Gktl~~eVd~sdTV~~VKqkIqekeGIP 76 (639)
|...+|.|.+++|+.+|=+.+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6678889999999999999999999997
No 132
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=26.70 E-value=1.7e+02 Score=24.43 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=30.9
Q ss_pred CcEEE-EEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC
Q 006592 49 GYVLG-MELDRSDNAHTVKRKLQLALDVPTEERSLIYG 85 (639)
Q Consensus 49 Gktl~-~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg 85 (639)
|.... +.+.+..|...|+++|+++++++...-.|-|.
T Consensus 10 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 10 GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 33444 79999999999999999999998777788875
No 133
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=26.21 E-value=2.6e+02 Score=25.55 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=43.1
Q ss_pred cEEEEEeCC-CcEEEEEecCCCCHHHHHHHHHHH----cC--CCCC---------CeEEEECCeEeccCCC---CcCCCC
Q 006592 40 RRVFVQTEM-GYVLGMELDRSDNAHTVKRKLQLA----LD--VPTE---------ERSLIYGDTVLKNDLS---YVRHDS 100 (639)
Q Consensus 40 ~qIfVKT~t-Gktl~~eVd~sdTV~~VKqkIqek----eG--IP~e---------qQrLiFgGk~LeDd~t---~I~~dS 100 (639)
..|.|.... -..+++.|++++|+..|.+.+-.+ .+ .+++ ....++++..|.+-.. ++..+.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 345555433 356889999999999998877665 22 1222 2244555666766553 688888
Q ss_pred ceeee
Q 006592 101 PLLLT 105 (639)
Q Consensus 101 tLhLv 105 (639)
++||+
T Consensus 98 ~~~L~ 102 (108)
T smart00144 98 EPHLV 102 (108)
T ss_pred CceEE
Confidence 98884
No 134
>PRK12540 RNA polymerase sigma factor; Provisional
Probab=26.00 E-value=1.3e+02 Score=29.24 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=40.4
Q ss_pred HHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCCCCCCChHHHHHHHHHHHHhhc
Q 006592 385 LRLELPMIREACLRVLVICTIFLKEAAAFGLCLADIGEMMSREFRGHAEAPSELEFICIEARRLLEES 452 (639)
Q Consensus 385 Lr~~L~~lre~clr~l~i~T~lLk~~a~~gLtl~eIg~~m~R~~~~~~~~pS~lE~i~~~A~~~~~~~ 452 (639)
|...+..|.+.|-+++.+... .|++..||+.+|.-. ++.+...+..|++.+.+.
T Consensus 105 l~~~l~~Lp~~~R~v~~L~~~-------~g~s~~EIA~~Lgis-------~~tV~~~l~RAr~~Lr~~ 158 (182)
T PRK12540 105 FRAALDKLPQDQREALILVGA-------SGFSYEDAAAICGCA-------VGTIKSRVNRARSKLSAL 158 (182)
T ss_pred HHHHHHhCCHHHHHHhhHHHH-------cCCCHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHH
Confidence 455555566777777655443 899999999998654 278889999999888654
No 135
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=24.76 E-value=1.1e+02 Score=28.34 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred EEEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCC
Q 006592 41 RVFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPT 77 (639)
Q Consensus 41 qIfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~ 77 (639)
.|+|=..+|.+-+|+|.-..|...||.++-+|+|++.
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 3778889999999999999999999999999999985
No 136
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=24.53 E-value=59 Score=39.18 Aligned_cols=37 Identities=32% Similarity=0.801 Sum_probs=28.4
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccC
Q 006592 296 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLP 345 (639)
Q Consensus 296 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP 345 (639)
|+.||||+.+- .|=+.+||||.. + |.++| -|-|||--
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDr---d---GHIKL--TDFGLCTG 778 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDR---D---GHIKL--TDFGLCTG 778 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEcc---C---Cceee--eecccccc
Confidence 57899999653 578999999976 3 45555 59999955
No 137
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=24.01 E-value=37 Score=45.39 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=37.5
Q ss_pred hhhhhhccccceEeecCCCCCCceEEeeecCCCCCcceEEEeecCccccCc
Q 006592 296 VAAVHRIGILDIRILNTDRHAGNLLVKKFEGTGSFGQVELVPIDHGLCLPE 346 (639)
Q Consensus 296 v~evhKIaILDiri~NtDRh~GNiLV~~~~~~g~~g~~~L~pIDHGlcLP~ 346 (639)
+..+..+.|..|+++=-|||+||||+... +| +++-||=|.||=.
T Consensus 1931 ~~SlA~ySvigYiLglgDRH~~NIliD~~--sG-----~viHiDFg~il~~ 1974 (2105)
T COG5032 1931 ARSLAVYSVIGYILGLGDRHPGNILIDRS--SG-----HVIHIDFGFILFN 1974 (2105)
T ss_pred HHHHHHHHHHHHHccCCCcCCceEEEEcC--CC-----cEEEehHHHHHhc
Confidence 36788899999999999999999999773 34 4999999999873
No 138
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=23.97 E-value=1.8e+02 Score=25.97 Aligned_cols=45 Identities=4% Similarity=0.027 Sum_probs=34.7
Q ss_pred EEEeC-CCcEEEEEecC--CCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCC
Q 006592 43 FVQTE-MGYVLGMELDR--SDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDL 93 (639)
Q Consensus 43 fVKT~-tGktl~~eVd~--sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~ 93 (639)
.||.. .|.++.|.+.+ .-+-.+|++.|+..++++ -|.=+-|+|+.
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~------~f~lKYlDde~ 49 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN------DIQIKYVDEEN 49 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC------cceeEEEcCCC
Confidence 34443 67788999999 568999999999999998 45556666654
No 139
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=23.74 E-value=2.1e+02 Score=25.80 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=45.3
Q ss_pred EEEEEeC-CCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEECCeEeccCCCCcCCCCceee
Q 006592 41 RVFVQTE-MGYVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYGDTVLKNDLSYVRHDSPLLL 104 (639)
Q Consensus 41 qIfVKT~-tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFgGk~LeDd~t~I~~dStLhL 104 (639)
.|.||.. .|-++.+.|.++-+-.++..+|.+++++. ..-.|-|-+- ++.+.|.++.-|.+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE---GD~iti~sq~DLd~ 62 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD---GDMITMGDQDDLDM 62 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC---CCCccccCHHHHHH
Confidence 4666766 68899999999999999999999999995 3445555554 44455776666666
No 140
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.51 E-value=1.1e+02 Score=22.66 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHhc
Q 006592 405 IFLKEAAAFGLCLADIGEMMSR 426 (639)
Q Consensus 405 ~lLk~~a~~gLtl~eIg~~m~R 426 (639)
.|+++|...|+|..||-.++.+
T Consensus 7 ~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 7 ELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 5789999999999999887654
No 141
>PRK04171 ribosome biogenesis protein; Provisional
Probab=23.13 E-value=1.6e+02 Score=30.80 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=40.4
Q ss_pred hhhhhhhhcCCCCCCCCCCcccccccCCCcEEEEEeCCCcEEEE--EecCCCCHHHHH---HHHHHHcCCCCCCeEEE
Q 006592 11 TQMAVAAFRGGINGEHGGSKRMESQHSGKRRVFVQTEMGYVLGM--ELDRSDNAHTVK---RKLQLALDVPTEERSLI 83 (639)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~sd~~qIfVKT~tGktl~~--eVd~sdTV~~VK---qkIqekeGIP~eqQrLi 83 (639)
.|--.+++++|++ -.|..+|+|.|..|+.+.| ++..-+|-..+. .|+-.+.-||+..+.|+
T Consensus 65 Hq~LL~lldSpLN------------k~G~L~VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~~~~Ll 130 (222)
T PRK04171 65 HISLLVALDSPLN------------KEGKLRVYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPNGEPLL 130 (222)
T ss_pred HHHHHHHhcChhh------------hcCCeEEEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCCCcchh
Confidence 3445566777776 3567899999999998876 344444555444 45666677877655554
No 142
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=22.76 E-value=3.6e+02 Score=22.77 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCCcE-EEEEecCC-CCHHHHHHHHHHHcC-CCC--CCeEEEECCeEeccCCCCcCCCCceeee
Q 006592 47 EMGYV-LGMELDRS-DNAHTVKRKLQLALD-VPT--EERSLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 47 ~tGkt-l~~eVd~s-dTV~~VKqkIqekeG-IP~--eqQrLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
..|+. ..+++... .||.+|++.+.++.. +-. ....+..+++...++ +-++++++|.++
T Consensus 12 ~~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~-~~l~dgDevai~ 74 (80)
T TIGR01682 12 QAGTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDD-ALLNEGDEVAFI 74 (80)
T ss_pred HhCCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCC-cCcCCCCEEEEe
Confidence 34554 57788876 899999999988864 110 112445567666543 458888888775
No 143
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=22.12 E-value=70 Score=33.86 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=25.4
Q ss_pred ccCCCHHHHHHHHHHHHhhhhHHHhhcc
Q 006592 594 LADMNEEEWAQYLEKFQKLLYPAFTNHK 621 (639)
Q Consensus 594 ~~~~~~~~w~~~~~~~~~~l~~~~~~~k 621 (639)
|..+++++|..||..|.++|..+|-.++
T Consensus 211 L~~L~e~~~~~FL~~Y~~~l~~aYP~~~ 238 (257)
T COG4106 211 LDRLDEEERQRFLDRYLALLAEAYPPRA 238 (257)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7889999999999999999999996663
No 144
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=22.01 E-value=1.2e+02 Score=26.67 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=25.9
Q ss_pred EEec-CCCCHHHHHHHHHHH--cCCCCCCeEEEEC---CeEeccCCCCcCCCCceee
Q 006592 54 MELD-RSDNAHTVKRKLQLA--LDVPTEERSLIYG---DTVLKNDLSYVRHDSPLLL 104 (639)
Q Consensus 54 ~eVd-~sdTV~~VKqkIqek--eGIP~eqQrLiFg---Gk~LeDd~t~I~~dStLhL 104 (639)
+.++ .+.+|.+||+.|.++ .|-..+-+-.+|+ +..-.|+..-|..++.|-+
T Consensus 14 i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~t~eeY~dd~~~IprnssViv 70 (74)
T PF08783_consen 14 ITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQTGEEYKDDNELIPRNSSVIV 70 (74)
T ss_dssp EEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESSS--EE-STT-EEETT--EEE
T ss_pred EEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCCCCCccCCCCeEEeCCCEEEE
Confidence 3444 578999999999666 5555554555666 3444444433444444433
No 145
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=21.26 E-value=2.6e+02 Score=22.83 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=39.2
Q ss_pred EEEEeCCCcEEEEEecCCCCHHHHHHHHHHHcCCCCCCe-EEEECCeEeccCCCCcCCCCceeee
Q 006592 42 VFVQTEMGYVLGMELDRSDNAHTVKRKLQLALDVPTEER-SLIYGDTVLKNDLSYVRHDSPLLLT 105 (639)
Q Consensus 42 IfVKT~tGktl~~eVd~sdTV~~VKqkIqekeGIP~eqQ-rLiFgGk~LeDd~t~I~~dStLhLv 105 (639)
|.|.|..|+... ++.+.|+.++=+.|....+- .- --..+|+...-+. -++++++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~---~~~~A~Vng~~vdl~~-~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAK---RAVAAKVNGQLVDLDH-PLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHH---CEEEEEETTEEEETTS-BB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHh---heeEEEEcCEECCCCC-CcCCCCEEEEE
Confidence 678889999887 66889999999998877631 11 1134575554443 38888887764
No 146
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=20.19 E-value=1.8e+02 Score=31.27 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=40.0
Q ss_pred cEEEEEeCCC-cEEE-EEecCCCCHHHHHHHHHHH-cCCCCCCeEEEE----CCeEeccCCC----CcCCCCceee
Q 006592 40 RRVFVQTEMG-YVLG-MELDRSDNAHTVKRKLQLA-LDVPTEERSLIY----GDTVLKNDLS----YVRHDSPLLL 104 (639)
Q Consensus 40 ~qIfVKT~tG-ktl~-~eVd~sdTV~~VKqkIqek-eGIP~eqQrLiF----gGk~LeDd~t----~I~~dStLhL 104 (639)
|.|++.+-++ -.++ .+...+.||.+++.+|..+ ..+.+-.||+.. +|+.|.|+.+ +..+++||.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 3456655444 2344 4566788999999666555 677665555544 3888877764 4555555544
No 147
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=20.16 E-value=1.9e+02 Score=25.79 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=33.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCCCeEEEEC
Q 006592 50 YVLGMELDRSDNAHTVKRKLQLALDVPTEERSLIYG 85 (639)
Q Consensus 50 ktl~~eVd~sdTV~~VKqkIqekeGIP~eqQrLiFg 85 (639)
.|+.|.|.++-+...|..+|++++..+++.-.|-|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 577889999999999999999999999998899886
Done!