BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006594
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 137/222 (61%), Gaps = 13/222 (5%)
Query: 409 FEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDI 466
F D P + IR+VIA+RL++SKQ PH RKEL + + +K+SVND
Sbjct: 12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDF 71
Query: 467 VIKAVAVALKNVPEANAYWD---VEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
+IKA A+A VPEAN+ W + + +V D+S+AV+T GL+TPIV NA K +
Sbjct: 72 IIKASALACLKVPEANSSWMDTVIRQNHVV-----DVSVAVSTPAGLITPIVFNAHIKGV 126
Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
I+ +V LA KAR GKL PHEFQGGTF+ISNLGMF + F AIINPPQA ILA+G
Sbjct: 127 ETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 186
Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
+ P +D + V + M++TLS DHRV +G VG + +
Sbjct: 187 DKLVP---ADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLA 225
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 211/444 (47%), Gaps = 41/444 (9%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
++P + +++G I KW GD++ DV+CE++ DKA +E +G + +IL PEG
Sbjct: 5 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64
Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEV-------------KGEK-ETHHDSKDV 320
+ VGQ + IT++ PG +N G E K EK + +
Sbjct: 65 TV-ATVGQTL-ITLDAPG----YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPA 118
Query: 321 VKVQKGSFTKI--SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISS 378
+ + G ++ PS + E G+D +Q +G G +LK D+ A + G + ++
Sbjct: 119 AEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAA 178
Query: 379 HTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXX 438
+ + P T+ P ++ + + IR+ IA+ ++ SK PH
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKM-----------SGIRRAIAKAMVHSKHTAPHVTLM 227
Query: 439 XXXXXXXXXXFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
RK+ K + K++ V+KA+ AL+ P N D E EI+
Sbjct: 228 DEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQK 287
Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
+I IA T++GL+ P++++AD+K I A++ E+ ELAEKAR GKL P E +G + +I+
Sbjct: 288 HYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTIT 347
Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVF 615
N+G F +IN P+ IL +GR + E I DG A + + L+LS DHR+
Sbjct: 348 NIGSAGGQWFTPVINHPEVAILGIGR---IAEKPIVRDGEIVAAPM--LALSLSFDHRMI 402
Query: 616 EGKVGGAFFSALCSNFSDIRRLLL 639
+G + + SD LL+
Sbjct: 403 DGATAQKALNHIKRLLSDPELLLM 426
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 91 MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
+P + + +G I KW K GD++ D+LCE++ DKA VE S +G + +ILVPEG+
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 65
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 123/231 (53%), Gaps = 11/231 (4%)
Query: 410 EDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRK----ELKEKHNTKVSVND 465
++ P +RK IA+ + SKQ PH +R K++ ++
Sbjct: 19 KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFA 78
Query: 466 IVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525
IKAVA ALK P+ N+ W +K I+ I+ISIA+A L P+++NAD+KSI
Sbjct: 79 FFIKAVAQALKEFPQLNSTWAGDK--IIEHANINISIAIAAGDLLYVPVIKNADEKSIKG 136
Query: 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQV 585
I+ E+ ELA KAR GKL+ + +GGTF++++ G F Q IIN PQA IL V + V
Sbjct: 137 IAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV--ESIV 194
Query: 586 VEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRR 636
PVI D AV +NL LS DHR+ +G + G F A+ +N I +
Sbjct: 195 KRPVIIDD---MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISK 242
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 413 PNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE----KHNTKVSVNDIVI 468
P T++RK +A RLLE+K +T RK+ E +H ++ +
Sbjct: 8 PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67
Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
KAV ALK PE NA D + ++V + D+S+AV+T +GL+TP++R+ D ++ I
Sbjct: 68 KAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125
Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
++KELA K R GKL + GG F+I+N G+F IINPPQ+ IL + + + +
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGM---HAIKDR 182
Query: 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
+ +G ++ M L LS DHR+ +G+ F + D RLLL
Sbjct: 183 PMAVNGQ--VEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
Query: 411 DFPNTQ-----IRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE---KHNTKVS 462
+FP T+ IR+ IA+ ++ SK PH RK+ K + K++
Sbjct: 11 EFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLT 70
Query: 463 VNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKS 522
V+KA+ AL+ P N D E EI+ +I IA T++GL+ P++++AD+K
Sbjct: 71 FLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKP 130
Query: 523 ISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRG 582
I A++ E+ ELAEKAR GKL P E +G + +I+N+G F +IN P+ IL +GR
Sbjct: 131 IFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGR- 189
Query: 583 NQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
+ E I DG A + + L+LS DHR+ +G + + SD LL+
Sbjct: 190 --IAEKPIVRDGEIVAAPM--LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 67/92 (72%)
Query: 77 HFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE 136
+F S P H V +PALSPTM+ G + +W KK G+K+ GD+L EIETDKAT+ FE E
Sbjct: 18 YFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 77
Query: 137 EGFLAKILVPEGSKDVPVGQPIAITVEDADDI 168
EG+LAKILVPEG++DVP+G P+ I VE DI
Sbjct: 78 EGYLAKILVPEGTRDVPLGTPLCIIVEKEADI 109
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 62/88 (70%)
Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
S PP + + +PALSPTM G + +W K G+K+ GD++ EIETDKAT+ FE EEGYL
Sbjct: 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYL 81
Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDV 294
AKIL PEG++DV +G P+ I VE D+
Sbjct: 82 AKILVPEGTRDVPLGTPLCIIVEKEADI 109
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 66/90 (73%)
Query: 79 SSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEG 138
S+ P H V +PALSPTM+ G + +W KK G+K+ GD+L EIETDKAT+ FE EEG
Sbjct: 2 SNMSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEG 61
Query: 139 FLAKILVPEGSKDVPVGQPIAITVEDADDI 168
+LAKILVPEG++DVP+G P+ I VE DI
Sbjct: 62 YLAKILVPEGTRDVPLGTPLCIIVEKEADI 91
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI 269
PP + + +PALSPTM G + +W K G+K+ GD++ EIETDKAT+ FE EEGYLAKI
Sbjct: 7 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 66
Query: 270 LAPEGSKDVAVGQPIAITVEDPGDV 294
L PEG++DV +G P+ I VE D+
Sbjct: 67 LVPEGTRDVPLGTPLCIIVEKEADI 91
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 63/85 (74%)
Query: 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI 143
P H V +PALSPTM+ G + +W KK G+K+ GD+L EIETD AT+ FE EEG+LAKI
Sbjct: 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 144 LVPEGSKDVPVGQPIAITVEDADDI 168
LVPEG++DVP+G P+ I VE DI
Sbjct: 63 LVPEGTRDVPLGTPLCIIVEKEADI 87
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 60/85 (70%)
Query: 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI 269
PP + + +PALSPTM G + +W K G+K+ GD++ EIETD AT+ FE EEGYLAKI
Sbjct: 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 270 LAPEGSKDVAVGQPIAITVEDPGDV 294
L PEG++DV +G P+ I VE D+
Sbjct: 63 LVPEGTRDVPLGTPLCIIVEKEADI 87
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 64/81 (79%)
Query: 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
V +P+LSPTM G IA+W KKEGDKI GD++ E+ETDKATV FESLEE ++AKILV EG
Sbjct: 10 VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
Query: 149 SKDVPVGQPIAITVEDADDIQ 169
++DVP+G I ITV +DI+
Sbjct: 70 TRDVPIGAIICITVGKPEDIE 90
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 60/83 (72%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
+P+LSPTM G IA+W K EGDKI GD+I E+ETDKAT+ FE LEE Y+AKIL EG++
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 277 DVAVGQPIAITVEDPGDVGTVKN 299
DV +G I ITV P D+ KN
Sbjct: 72 DVPIGAIICITVGKPEDIEAFKN 94
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
+ P D E+ P T++ ++ A L S N PH FR K
Sbjct: 1 IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
+ EK K++V +++KA A LK +P+ N+ ++ + I AV T GL+
Sbjct: 61 AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
P++RN DQKS+ ++ E ELAEKAR+ KL QG F+IS+LG F I+N
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
P+ IL V + + ++PV DG P ++ + L+LS DHRV +G F L
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVIDGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
+DIR +LL
Sbjct: 235 LADIRAILL 243
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
+ P D E+ P T++ ++ A L S N PH FR K
Sbjct: 1 IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
+ EK K++V +++KA A LK +P+ N+ ++ + I AV T GL+
Sbjct: 61 AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
P++RN DQKS+ ++ E ELAEKAR+ KL QG F+I++LG F I+N
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
P+ IL V + + ++PV DG P ++ + L+LS DHRV G F L
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVINGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
+DIR +LL
Sbjct: 235 LADIRAILL 243
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
+ P D E+ P T++ ++ A L S N PH FR K
Sbjct: 1 IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
+ +K K++V +++KA A LK +P+ N+ ++ + I AV T GL+
Sbjct: 61 AVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
P++RN DQKS+ ++ E ELAEKAR+ KL QG F+IS+LG F I+N
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
P+ IL V + + ++PV DG P ++ + L+LS DHRV G F L
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVINGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
+DIR +LL
Sbjct: 235 LADIRAILL 243
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 63/87 (72%)
Query: 91 MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
MP+LSPTM +GNI KW KKEG+ + GD LCEIETDKA V ++ ++G LAKI+V EGSK
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 151 DVPVGQPIAITVEDADDIQHIPATIAG 177
++ +G I + VE+ +D +H+ +G
Sbjct: 72 NIRLGSLIGLIVEEGEDWKHVSGPSSG 98
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
MP+LSPTM +GNI KW K EG+ + GD +CEIETDKA + + ++G LAKI+ EGSK
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 277 DVAVGQPIAITVEDPGD 293
++ +G I + VE+ D
Sbjct: 72 NIRLGSLIGLIVEEGED 88
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 120/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
+ P D E+ P T++ ++ A L S N PH FR K
Sbjct: 1 IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
+ EK K++V +++KA A LK +P+ N+ ++ + I AV T GL+
Sbjct: 61 AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
P++RN DQKS+ ++ E ELAEKAR+ KL QG F+IS+LG F I+N
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
P+ IL V + + ++PV DG P ++ + L+LS D RV G F L
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDCRVINGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
+DIR +LL
Sbjct: 235 LADIRAILL 243
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 93/169 (55%), Gaps = 12/169 (7%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
MP+LSPTM +GNI KW K EG+ + GD +CEIETDKA + + ++G LAKI+ EGSK
Sbjct: 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 67
Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQ--------KGSF 328
++ +G I + VE+ D V+ G K + ++ G+
Sbjct: 68 NIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTL 127
Query: 329 T-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI---KSGKVS 373
++SP+A+ ++ +H LDAS A+GP G K D L + ++GK++
Sbjct: 128 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKIT 176
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 91 MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
MP+LSPTM +GNI KW KKEG+ + GD LCEIETDKA V ++ ++G LAKI+V EGSK
Sbjct: 8 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 67
Query: 151 DVPVGQPIAITVEDADDIQHI 171
++ +G I + VE+ +D +H+
Sbjct: 68 NIRLGSLIGLIVEEGEDWKHV 88
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELK 454
++PG + LE+ +R++I ++ ++KQ PH K
Sbjct: 1 MAPGREEILEMHG---------LRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK 51
Query: 455 EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPI 514
+ N KV+V + + V LK P NA +D + +L +I IAV T GL +
Sbjct: 52 AR-NRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFV 110
Query: 515 VRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQA 574
+++AD+KS+ IS E+ + A +AR KL E Q TF+I+N+G IIN P+
Sbjct: 111 IKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEV 170
Query: 575 GILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
IL V R ++ +G + M L+LS DHR+ +G V F L
Sbjct: 171 AILGVHR-------ILEREGRKY------MYLSLSCDHRLIDGAVATRFIVDL 210
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 15/168 (8%)
Query: 466 IVIKAVAVALKNVPEANAYWDVEKGE---IVLCDAIDISIAVATEKGLMTPIVRNADQKS 522
+ ++ + +ALK+ N+ W V+ GE + + + + ATE+GL+ P+V +A K+
Sbjct: 70 LTLRLLVIALKHNVILNSTW-VDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128
Query: 523 ISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRG 582
++ V EL AR G L P E +G TF++SN G VD +IN P+A IL +G
Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLG-- 186
Query: 583 NQVVEP---VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
++P V+G + P M LT DHRV +G F L
Sbjct: 187 --AIKPRPVVVGGEVVARP----TMTLTCVFDHRVVDGAQVAQFMCEL 228
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 17/264 (6%)
Query: 379 HTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXX 438
H E P P P+ T P SK + + + P K + + + + PH
Sbjct: 2 HAEIMPPPPKPKDRTIPIPISKPPVFIGKDRTE-PVKGFHKAMVKTM-SAALKIPHFGYC 59
Query: 439 XXXXXXXXXXFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
R+ELK K+S +KA ++ L P NA D I
Sbjct: 60 DEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 119
Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
+ +I IA+ TE+GL+ P V+N +SI I+ E+ L + AG+L+ ++ GGTF++S
Sbjct: 120 ASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLS 179
Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVF 615
N+G +I PP+ I A+G + P G A + MN++ SADHR+
Sbjct: 180 NIGSIGGTYAKPVILPPEVAIGALGTIKAL--PRFNEKGEVCKAQI--MNVSWSADHRII 235
Query: 616 EGKVGGAFFSALCSNFSDIRRLLL 639
+G A S FS++ + L
Sbjct: 236 DG--------ATVSRFSNLWKSYL 251
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 91 MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
+P + + +G I KW K GD++ D+LCE++ DKA VE S +G + +ILVPEG+
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 64
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
++P + +++G I KW GD++ DV+CE++ DKA +E +G + +IL PEG
Sbjct: 4 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63
Query: 275 SKDVAVGQPIAITVEDPG 292
+ VGQ + IT++ PG
Sbjct: 64 TV-ATVGQTL-ITLDAPG 79
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 91 MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
+P + +++G I +W KEGD +E L E+ TDK TV+ S G + KIL EG +
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG-Q 64
Query: 151 DVPVGQPI 158
VPVG +
Sbjct: 65 VVPVGSTL 72
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
++P + + +G I +W EGD +E + E+ TDK T++ G + KIL EG
Sbjct: 4 FKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 8/184 (4%)
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATE---- 507
LK K+S ++ A+ A+K P N ++ V G+ ++ +A +
Sbjct: 32 HLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGK 91
Query: 508 ---KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564
+ L+ ++ + +++ +AR GKL +F G T S++N G
Sbjct: 92 DGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVH 151
Query: 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKM-NLTLSADHRVFEGKVGGAF 623
+ Q I+ G E S+ + K+ LT + DHR+ +G G F
Sbjct: 152 SVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDF 211
Query: 624 FSAL 627
+
Sbjct: 212 LRTI 215
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 91 MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
+P L +++ +A W KK GD + ++L EIETDK +E + +G L +L EG+
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275
+P L ++ +A W K GD + +V+ EIETDK LE +G L +L EG+
Sbjct: 7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 92 PALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
P +++ G +A W KK G+ ++ +++ +IETDK +E + +G +A+I+ EG
Sbjct: 7 PTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
++ P ++ G +A W K G+ ++ ++I +IETDK +E +G +A+I+ EG
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 103 IAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI 143
+ +W KEGD + D +CE+++DKA+V S +G + K+
Sbjct: 21 VKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
V ++ + + + + +W EGD + D ICE+++DKA++ +G + K+
Sbjct: 5 VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY- 63
Query: 273 EGSKDVA-VGQPI 284
D+A VG+P+
Sbjct: 64 -NLDDIAYVGKPL 75
>pdb|2LF0|A Chain A, Solution Structure Of Sf3636, A Two-Domain Unknown
Function Protein From Shigella Flexneri 2a, Determined
By Joint Refinement Of Nmr, Residual Dipolar Couplings
And Small-Angle X-Ray Scattering, Nesg Target Sfr339OCSP
TARGET SF3636
Length = 123
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 240 IEVGDVICEIETDKATLEFEC--LEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV 297
+E D E+E +KATLE E L E + K L+ E K + + AIT ++ D+G +
Sbjct: 32 VEAADKYAELEKEKATLEAEIARLREVHSQK-LSKEAQKLMKMPFQRAITKKEQADMGKL 90
Query: 298 KNSV 301
K SV
Sbjct: 91 KKSV 94
>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
(e3)-binding Domain Of Human E3-binding Protein
Length = 64
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI---KSGKV 372
++SP+A+ ++ +H LDAS A+GP G K D L + ++GK+
Sbjct: 11 RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKI 56
>pdb|2X7X|A Chain A, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
pdb|2X7X|B Chain B, Fructose Binding Periplasmic Domain Of Hybrid Two
Component System Bt1754
Length = 325
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 454 KEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTP 513
+ K N ++ + V+V +++ + N+ E + + +D+ I A E MTP
Sbjct: 20 RHKMNDEILREAMFYNGVSVEIRSAGDDNSK-QAEDVHYFMDEGVDLLIISANEAAPMTP 78
Query: 514 IVRNADQKSISAISMEVKELAEKARA 539
IV A QK I I ++ K L++K A
Sbjct: 79 IVEEAYQKGIPVILVDRKILSDKYTA 104
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 8 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 40
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 8 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 40
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 2 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 34
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
G + + + GD++ +G L +E K E S +G + +ILV EG V GQP+
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPL 70
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
+SP+ + L+ EH LDAS+++ +G G L + DV
Sbjct: 12 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDV 44
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 142 KILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGG 178
KIL P G P PI + +ED D+ Q +P GG
Sbjct: 101 KILCPGGEGFRP--NPITVILEDIDECQELPGLCQGG 135
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 142 KILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGG 178
KIL P G P PI + +ED D+ Q +P GG
Sbjct: 101 KILCPGGEGFRP--NPITVILEDIDECQELPGLCQGG 135
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 53 PLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGD 112
P ++ AP + D L+L V ++ ELPS V + L+P + K+ K D
Sbjct: 70 PTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAP------VCKFLTKNED 123
Query: 113 KIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQH 170
+ + L + TDK LE F K + EG +P + + + D H
Sbjct: 124 GVSLAPFLL-LATDKVL-----LEPWFYLKDAILEGG--IPFNKAYGMNIFDYHGTDH 173
>pdb|2DQB|A Chain A, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|B Chain B, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|C Chain C, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|D Chain D, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|E Chain E, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|F Chain F, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
Length = 376
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 85 SHTVVGMPALSPTMS-QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI 143
+H P P QG + E +++ D + D L++GF A +
Sbjct: 168 THEAAYSPGFKPLYEGQGTL------EAQVVDLSDAIAYAAHD--------LDDGFRAGL 213
Query: 144 LVPEGSKDVPVGQPIAITVEDADDIQHIP--------ATIAGGAEAKEQSSTHQDVKKEA 195
L PE K+V + Q A+ +E+ D+ +P + G +TH+ V++
Sbjct: 214 LHPEELKEVELLQ--ALALEEGLDLLRLPELDRRVLVRQLLGYFITAAIEATHRRVEEAG 271
Query: 196 VQETSASRINTSEL 209
VQ A R + S L
Sbjct: 272 VQSAEAVRRHPSRL 285
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 333 PSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
P+A+ L E G+DAS ++ +GP G + DV
Sbjct: 9 PAARRLAKELGIDASKVKGTGPGGVITVEDV 39
>pdb|2IZP|A Chain A, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IZP|B Chain B, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IXR|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|B Chain B, Bipd Of Burkholderia Pseudomallei
pdb|3NFT|A Chain A, Near-Atomic Resolution Analysis Of Bipd- A Component Of
The Type-Iii Secretion System Of Burkholderia
Pseudomallei
Length = 303
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 222 PTMN---QGNIAKWRKNEGDKIEVGDV-ICEIETDKATLEFECLEEGYLAKILAPEGS-K 276
PTM +IA+WRK GD + + D + I DK + L P+G+
Sbjct: 192 PTMQLPKGADIARWRKELGDAVSISDSGVVTINPDKLIKMRDSLP---------PDGTVW 242
Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAK 336
D A Q A G ++N V + E + ++ D+ +VKV G+ + ++ +AK
Sbjct: 243 DTARYQ--AWNTAFSGQKDNIQNDVQTLVEKYSHQNSNFDN--LVKVLSGAISTLTDTAK 298
>pdb|1XK8|A Chain A, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|B Chain B, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|C Chain C, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|D Chain D, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|E Chain E, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|F Chain F, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
Length = 147
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 376 ISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK 429
++S + T PSP + + PGS +S +F PN ++ K IAR ++E +
Sbjct: 12 MASGSPPTQPSPASDSGSGYVPGS-----VSAAFVTCPNEKVAKEIARAVVEKR 60
>pdb|1A6X|A Chain A, Structure Of The Apo-Biotin Carboxyl Carrier Protein (Apo-
Bccp87) Of Escherichia Coli Acetyl-Coa Carboxylase, Nmr,
49 Structures
Length = 87
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
AK + G K+ +GD LC +E K + E+ + G + ILV E + V +P+ +
Sbjct: 30 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILV-ESGQPVEFDEPLVV 85
>pdb|1BDO|A Chain A, Structure Of The Biotinyl Domain Of Acetyl-Coenzyme A
Carboxylase Determined By Mad Phasing
pdb|2BDO|A Chain A, Solution Structure Of Holo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 80
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
AK + G K+ +GD LC +E K + E+ + G + ILV E + V +P+ +
Sbjct: 23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILV-ESGQPVEFDEPLVV 78
>pdb|3BDO|A Chain A, Solution Structure Of Apo-Biotinyl Domain From Acetyl
Coenzyme A Carboxylase Of Escherichia Coli Determined By
Triple-Resonance Nmr Spectroscopy
Length = 82
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
AK + G K+ +GD LC +E K + E+ + G + ILV G
Sbjct: 25 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 69
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
+SP+ + L+ E LDAS+++ +G G L + DV
Sbjct: 8 LSPAIRRLLAEWNLDASAIKGTGVGGRLTREDV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,474,887
Number of Sequences: 62578
Number of extensions: 727226
Number of successful extensions: 1521
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 85
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)