Query 006594
Match_columns 639
No_of_seqs 406 out of 3260
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02927 SucB_Actino 2-oxoglu 100.0 3E-101 5E-106 870.5 55.4 544 87-636 3-584 (590)
2 TIGR01348 PDHac_trf_long pyruv 100.0 7.1E-97 2E-101 828.4 54.8 528 88-639 2-546 (546)
3 PRK11854 aceF pyruvate dehydro 100.0 2.2E-93 4.8E-98 814.2 54.6 517 84-639 103-633 (633)
4 PRK11855 dihydrolipoamide acet 100.0 4.6E-93 1E-97 801.4 55.3 534 86-639 2-547 (547)
5 PRK05704 dihydrolipoamide succ 100.0 1.8E-84 4E-89 703.2 41.4 399 213-639 3-405 (407)
6 TIGR01347 sucB 2-oxoglutarate 100.0 2.9E-84 6.2E-89 700.2 41.6 397 213-639 1-401 (403)
7 PLN02744 dihydrolipoyllysine-r 100.0 5.5E-84 1.2E-88 712.3 40.4 407 207-639 107-539 (539)
8 KOG0557 Dihydrolipoamide acety 100.0 1.1E-83 2.4E-88 676.2 32.0 416 209-639 35-470 (470)
9 TIGR01349 PDHac_trf_mito pyruv 100.0 7.1E-82 1.5E-86 689.0 41.3 410 214-639 1-435 (435)
10 PLN02528 2-oxoisovalerate dehy 100.0 1.8E-81 3.9E-86 682.3 41.9 410 215-639 1-413 (416)
11 COG0508 AceF Pyruvate/2-oxoglu 100.0 6.5E-79 1.4E-83 659.3 35.2 398 212-639 2-403 (404)
12 PRK11856 branched-chain alpha- 100.0 3E-76 6.6E-81 645.4 41.9 401 213-639 3-410 (411)
13 PLN02226 2-oxoglutarate dehydr 100.0 4.6E-75 1E-79 629.3 37.7 366 213-639 92-461 (463)
14 KOG0558 Dihydrolipoamide trans 100.0 2.8E-75 6E-80 586.4 26.7 407 83-639 61-471 (474)
15 PTZ00144 dihydrolipoamide succ 100.0 7.2E-74 1.6E-78 616.6 38.3 370 211-639 43-416 (418)
16 KOG0559 Dihydrolipoamide succi 100.0 1.3E-68 2.9E-73 541.0 27.3 379 212-639 72-455 (457)
17 PRK14843 dihydrolipoamide acet 100.0 3.1E-67 6.8E-72 556.8 29.8 296 328-639 48-347 (347)
18 PRK11857 dihydrolipoamide acet 100.0 7.9E-67 1.7E-71 544.9 31.0 300 329-639 2-305 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 2.1E-56 4.6E-61 451.1 25.0 226 408-639 3-231 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 5.5E-45 1.2E-49 409.0 25.4 222 410-632 116-349 (1228)
21 PRK13757 chloramphenicol acety 100.0 5E-27 1.1E-31 234.0 20.9 193 418-633 18-214 (219)
22 PF00302 CAT: Chloramphenicol 100.0 6.7E-27 1.4E-31 231.8 21.2 180 429-628 22-206 (206)
23 PRK11854 aceF pyruvate dehydro 99.9 2.5E-26 5.3E-31 263.3 20.5 181 86-292 2-182 (633)
24 COG4845 Chloramphenicol O-acet 99.9 1.4E-21 3.1E-26 186.4 17.7 188 430-638 26-218 (219)
25 KOG0557 Dihydrolipoamide acety 99.9 1.5E-21 3.2E-26 207.0 11.2 95 83-177 35-129 (470)
26 COG0508 AceF Pyruvate/2-oxoglu 99.8 1.2E-19 2.5E-24 197.5 11.7 82 85-167 1-82 (404)
27 PLN02226 2-oxoglutarate dehydr 99.8 3.7E-18 8.1E-23 186.2 14.1 88 75-164 81-168 (463)
28 KOG0559 Dihydrolipoamide succi 99.7 1.6E-18 3.5E-23 177.3 7.2 81 84-165 70-150 (457)
29 PLN02744 dihydrolipoyllysine-r 99.7 3.4E-17 7.3E-22 182.2 12.5 93 73-166 98-192 (539)
30 PTZ00144 dihydrolipoamide succ 99.7 3.8E-17 8.1E-22 177.2 12.3 81 84-165 42-122 (418)
31 PF00364 Biotin_lipoyl: Biotin 99.7 1.5E-17 3.2E-22 138.7 6.6 74 87-161 1-74 (74)
32 PRK05704 dihydrolipoamide succ 99.7 3.4E-16 7.4E-21 170.6 12.5 80 86-166 2-81 (407)
33 PF00364 Biotin_lipoyl: Biotin 99.7 1.2E-16 2.6E-21 133.3 6.5 74 213-287 1-74 (74)
34 TIGR01347 sucB 2-oxoglutarate 99.6 8.5E-16 1.8E-20 167.2 11.8 78 87-165 1-78 (403)
35 PRK14875 acetoin dehydrogenase 99.6 1E-15 2.2E-20 164.6 11.2 78 86-164 2-79 (371)
36 PRK06748 hypothetical protein; 99.6 1.9E-15 4.1E-20 127.5 9.3 63 100-163 12-75 (83)
37 PRK14875 acetoin dehydrogenase 99.6 1.3E-15 2.8E-20 163.8 10.4 119 213-363 3-121 (371)
38 PRK06748 hypothetical protein; 99.6 3.5E-15 7.7E-20 125.8 7.4 63 226-289 12-75 (83)
39 TIGR02927 SucB_Actino 2-oxoglu 99.6 6.3E-15 1.4E-19 167.8 10.9 82 84-166 133-214 (590)
40 PRK11892 pyruvate dehydrogenas 99.6 1.6E-14 3.4E-19 159.7 13.2 83 87-170 3-86 (464)
41 TIGR01348 PDHac_trf_long pyruv 99.5 4.2E-14 9E-19 159.9 11.8 79 86-166 116-194 (546)
42 PRK05889 putative acetyl-CoA c 99.5 9E-14 2E-18 115.0 8.9 62 100-162 10-71 (71)
43 PLN02528 2-oxoisovalerate dehy 99.5 1.4E-13 2.9E-18 150.8 11.9 77 89-166 1-77 (416)
44 PRK11892 pyruvate dehydrogenas 99.5 1.1E-13 2.4E-18 153.0 10.8 84 213-296 3-86 (464)
45 PRK11856 branched-chain alpha- 99.5 3.3E-13 7.2E-18 148.3 12.9 80 86-166 2-81 (411)
46 TIGR01349 PDHac_trf_mito pyruv 99.4 3.4E-13 7.3E-18 148.5 11.7 77 89-165 2-78 (435)
47 PRK11855 dihydrolipoamide acet 99.4 3.4E-13 7.4E-18 153.1 12.0 79 85-165 118-196 (547)
48 cd06663 Biotinyl_lipoyl_domain 99.4 6.2E-13 1.3E-17 110.3 9.0 72 89-161 2-73 (73)
49 PRK08225 acetyl-CoA carboxylas 99.4 1.3E-12 2.7E-17 107.8 8.6 62 100-162 9-70 (70)
50 COG0511 AccB Biotin carboxyl c 99.4 9.7E-13 2.1E-17 123.1 8.3 62 100-162 78-139 (140)
51 PRK05889 putative acetyl-CoA c 99.3 2.1E-12 4.6E-17 106.8 6.9 61 226-287 10-70 (71)
52 PRK06549 acetyl-CoA carboxylas 99.3 9.8E-12 2.1E-16 114.1 10.5 61 226-287 69-129 (130)
53 cd06663 Biotinyl_lipoyl_domain 99.3 7E-12 1.5E-16 104.0 7.4 72 215-287 2-73 (73)
54 COG0511 AccB Biotin carboxyl c 99.3 8.3E-12 1.8E-16 116.9 8.7 70 212-288 70-139 (140)
55 PRK06549 acetyl-CoA carboxylas 99.3 1.3E-11 2.8E-16 113.3 8.9 61 100-161 69-129 (130)
56 PLN02983 biotin carboxyl carri 99.2 6.1E-11 1.3E-15 119.1 12.3 57 231-288 217-273 (274)
57 PRK05641 putative acetyl-CoA c 99.2 3.2E-11 6.9E-16 114.1 8.6 61 100-161 92-152 (153)
58 PRK05641 putative acetyl-CoA c 99.2 1.2E-10 2.5E-15 110.3 12.2 61 226-287 92-152 (153)
59 PRK08225 acetyl-CoA carboxylas 99.2 2.7E-11 5.8E-16 99.8 6.7 62 226-288 9-70 (70)
60 PRK07051 hypothetical protein; 99.2 6.4E-11 1.4E-15 100.3 8.3 61 101-162 12-79 (80)
61 PF02817 E3_binding: e3 bindin 99.2 1.6E-11 3.4E-16 88.8 3.0 38 328-365 2-39 (39)
62 cd06850 biotinyl_domain The bi 99.2 1.4E-10 3.1E-15 93.7 8.6 62 99-161 6-67 (67)
63 KOG0558 Dihydrolipoamide trans 99.2 4E-11 8.6E-16 122.9 6.3 80 210-290 62-141 (474)
64 PLN02983 biotin carboxyl carri 99.2 7.3E-11 1.6E-15 118.6 8.1 62 100-162 205-273 (274)
65 TIGR00531 BCCP acetyl-CoA carb 99.1 8.2E-11 1.8E-15 112.1 7.8 61 101-162 89-156 (156)
66 PRK06302 acetyl-CoA carboxylas 99.1 2.2E-10 4.8E-15 109.1 7.9 61 101-162 88-155 (155)
67 TIGR00531 BCCP acetyl-CoA carb 99.1 4.9E-10 1.1E-14 106.8 9.2 74 213-287 81-155 (156)
68 PRK07051 hypothetical protein; 99.1 4.5E-10 9.8E-15 95.1 7.7 75 213-288 4-79 (80)
69 cd06849 lipoyl_domain Lipoyl d 99.0 2E-09 4.3E-14 87.1 10.3 73 88-161 2-74 (74)
70 PRK14042 pyruvate carboxylase 99.0 6.2E-10 1.3E-14 126.2 9.2 63 100-163 533-595 (596)
71 PRK06302 acetyl-CoA carboxylas 99.0 1.8E-09 3.9E-14 102.8 8.7 74 213-287 80-154 (155)
72 cd06850 biotinyl_domain The bi 99.0 1.6E-09 3.5E-14 87.5 6.7 61 226-287 7-67 (67)
73 TIGR02712 urea_carbox urea car 98.9 1.9E-09 4.1E-14 131.9 8.9 62 100-162 1140-1201(1201)
74 PRK14042 pyruvate carboxylase 98.9 1.1E-08 2.3E-13 116.2 13.5 62 226-288 533-594 (596)
75 TIGR01108 oadA oxaloacetate de 98.8 5.2E-09 1.1E-13 119.1 7.9 58 100-158 525-582 (582)
76 PRK14040 oxaloacetate decarbox 98.8 7.6E-09 1.6E-13 117.9 9.0 61 100-161 532-592 (593)
77 cd06849 lipoyl_domain Lipoyl d 98.8 1.8E-08 4E-13 81.4 7.9 73 214-287 2-74 (74)
78 TIGR01235 pyruv_carbox pyruvat 98.8 2.4E-08 5.1E-13 121.4 12.1 61 226-287 1082-1142(1143)
79 TIGR01235 pyruv_carbox pyruvat 98.8 1E-08 2.2E-13 124.5 8.6 62 100-162 1082-1143(1143)
80 TIGR02712 urea_carbox urea car 98.7 1.8E-08 3.8E-13 123.5 6.9 62 226-288 1140-1201(1201)
81 PRK09282 pyruvate carboxylase 98.7 3.6E-08 7.8E-13 112.6 8.7 62 100-162 530-591 (592)
82 TIGR01108 oadA oxaloacetate de 98.6 2.6E-08 5.5E-13 113.5 5.6 58 226-284 525-582 (582)
83 PRK14040 oxaloacetate decarbox 98.6 5.4E-08 1.2E-12 111.0 6.9 61 226-287 532-592 (593)
84 PRK12999 pyruvate carboxylase; 98.6 1.1E-07 2.5E-12 115.9 8.7 62 100-162 1084-1145(1146)
85 COG4770 Acetyl/propionyl-CoA c 98.5 1.3E-07 2.8E-12 103.6 7.4 62 100-162 583-644 (645)
86 PRK09282 pyruvate carboxylase 98.4 3.1E-07 6.6E-12 105.1 6.9 62 226-288 530-591 (592)
87 COG1038 PycA Pyruvate carboxyl 98.4 3.7E-07 8.1E-12 102.9 6.9 67 94-162 1082-1148(1149)
88 PRK12999 pyruvate carboxylase; 98.3 8.4E-07 1.8E-11 108.5 6.8 61 227-288 1085-1145(1146)
89 COG1038 PycA Pyruvate carboxyl 98.3 2.8E-06 6.1E-11 96.1 9.9 149 85-288 999-1148(1149)
90 COG4770 Acetyl/propionyl-CoA c 98.3 1.2E-06 2.5E-11 96.4 6.0 62 226-288 583-644 (645)
91 KOG0369 Pyruvate carboxylase [ 98.2 2.4E-06 5.2E-11 94.7 6.5 62 100-162 1114-1175(1176)
92 cd06848 GCS_H Glycine cleavage 98.1 4.1E-06 9E-11 73.4 5.7 63 87-150 16-79 (96)
93 cd06848 GCS_H Glycine cleavage 97.9 1.1E-05 2.4E-10 70.7 4.9 50 227-276 29-79 (96)
94 TIGR03077 not_gcvH glycine cle 97.8 2.5E-05 5.4E-10 70.1 5.0 63 87-150 17-80 (110)
95 KOG0369 Pyruvate carboxylase [ 97.8 2.6E-05 5.6E-10 86.7 5.6 62 226-288 1114-1175(1176)
96 KOG0238 3-Methylcrotonyl-CoA c 97.8 2.1E-05 4.6E-10 85.3 4.4 61 101-162 610-670 (670)
97 PRK00624 glycine cleavage syst 97.7 6.5E-05 1.4E-09 67.8 6.0 59 87-146 19-78 (114)
98 KOG0368 Acetyl-CoA carboxylase 97.7 6.2E-05 1.4E-09 89.8 6.9 68 98-167 691-758 (2196)
99 PRK13380 glycine cleavage syst 97.6 7.5E-05 1.6E-09 70.3 5.0 63 87-150 31-94 (144)
100 TIGR03077 not_gcvH glycine cle 97.6 6.1E-05 1.3E-09 67.5 3.8 49 227-275 30-79 (110)
101 PRK09783 copper/silver efflux 97.5 0.00027 5.8E-09 78.1 9.0 67 99-166 130-245 (409)
102 TIGR00998 8a0101 efflux pump m 97.5 0.00023 5E-09 76.1 8.1 35 130-165 205-239 (334)
103 PRK10559 p-hydroxybenzoic acid 97.5 0.00025 5.4E-09 75.4 7.7 66 99-165 54-189 (310)
104 PRK01202 glycine cleavage syst 97.5 0.00029 6.2E-09 65.0 6.9 63 101-164 37-107 (127)
105 PRK00624 glycine cleavage syst 97.4 0.00013 2.9E-09 65.8 4.2 45 227-271 32-77 (114)
106 TIGR01730 RND_mfp RND family e 97.4 0.0003 6.6E-09 74.3 6.8 66 99-165 33-169 (322)
107 PRK12784 hypothetical protein; 97.4 0.0009 1.9E-08 55.0 7.8 65 99-164 12-77 (84)
108 PRK10476 multidrug resistance 97.4 0.00045 9.8E-09 74.5 7.9 34 131-165 210-243 (346)
109 KOG0238 3-Methylcrotonyl-CoA c 97.3 0.00019 4.2E-09 78.1 4.0 60 227-287 610-669 (670)
110 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00044 9.6E-09 53.1 4.1 36 129-165 2-37 (50)
111 PRK09578 periplasmic multidrug 97.2 0.00077 1.7E-08 73.8 7.6 72 93-166 65-209 (385)
112 PRK13380 glycine cleavage syst 97.2 0.00041 9E-09 65.3 4.5 50 227-276 44-94 (144)
113 PRK15136 multidrug efflux syst 97.2 0.00085 1.8E-08 73.7 7.5 35 130-165 216-250 (390)
114 PRK03598 putative efflux pump 97.1 0.00095 2.1E-08 71.5 7.1 35 130-165 204-238 (331)
115 TIGR00527 gcvH glycine cleavag 97.0 0.00076 1.7E-08 62.2 4.8 49 101-149 36-85 (127)
116 PRK09783 copper/silver efflux 97.0 0.0013 2.8E-08 72.6 7.5 65 226-291 131-244 (409)
117 TIGR00998 8a0101 efflux pump m 97.0 0.0011 2.5E-08 70.7 6.4 35 256-291 205-239 (334)
118 PRK15030 multidrug efflux syst 97.0 0.0017 3.8E-08 71.4 7.8 67 99-166 72-211 (397)
119 PRK01202 glycine cleavage syst 97.0 0.0012 2.7E-08 60.9 5.4 61 227-288 37-105 (127)
120 KOG0368 Acetyl-CoA carboxylase 97.0 0.0011 2.5E-08 79.5 6.4 64 226-291 693-756 (2196)
121 PRK09859 multidrug efflux syst 97.0 0.0018 3.8E-08 71.0 7.6 66 99-165 68-206 (385)
122 PRK10559 p-hydroxybenzoic acid 96.9 0.0017 3.7E-08 69.0 6.6 64 226-290 55-188 (310)
123 TIGR01730 RND_mfp RND family e 96.8 0.0013 2.9E-08 69.4 5.2 64 226-290 34-168 (322)
124 PRK10476 multidrug resistance 96.8 0.002 4.4E-08 69.4 6.3 34 257-291 210-243 (346)
125 PRK11578 macrolide transporter 96.8 0.003 6.5E-08 68.7 7.5 66 99-165 68-221 (370)
126 PRK11556 multidrug efflux syst 96.8 0.0026 5.6E-08 70.4 6.9 66 99-165 94-232 (415)
127 PRK14843 dihydrolipoamide acet 96.7 0.00084 1.8E-08 72.3 2.8 40 330-369 7-46 (347)
128 TIGR00527 gcvH glycine cleavag 96.7 0.0016 3.5E-08 60.0 3.9 49 227-275 36-85 (127)
129 PF01597 GCV_H: Glycine cleava 96.6 0.0037 8.1E-08 57.3 5.7 48 101-148 31-79 (122)
130 PRK15136 multidrug efflux syst 96.6 0.0033 7.2E-08 69.0 5.9 34 257-291 217-250 (390)
131 PF12700 HlyD_2: HlyD family s 96.5 0.0025 5.4E-08 67.5 4.4 66 99-166 28-195 (328)
132 PF13533 Biotin_lipoyl_2: Biot 96.4 0.0045 9.8E-08 47.5 4.3 34 255-289 2-35 (50)
133 PRK03598 putative efflux pump 96.4 0.0049 1.1E-07 66.0 5.8 34 256-290 204-237 (331)
134 PRK09578 periplasmic multidrug 96.3 0.0052 1.1E-07 67.3 5.8 64 226-290 71-207 (385)
135 TIGR02971 heterocyst_DevB ABC 96.3 0.0098 2.1E-07 63.5 7.6 33 131-165 206-238 (327)
136 PRK15030 multidrug efflux syst 96.1 0.0081 1.7E-07 66.1 5.8 64 226-290 73-209 (397)
137 PRK09859 multidrug efflux syst 96.1 0.0087 1.9E-07 65.6 5.9 64 226-290 69-205 (385)
138 COG0509 GcvH Glycine cleavage 96.0 0.0068 1.5E-07 55.6 3.9 63 86-149 25-88 (131)
139 PF01597 GCV_H: Glycine cleava 96.0 0.0093 2E-07 54.7 4.9 45 227-271 31-76 (122)
140 TIGR03309 matur_yqeB selenium- 96.0 0.022 4.7E-07 58.2 7.6 59 100-165 172-230 (256)
141 PRK12784 hypothetical protein; 95.8 0.028 6E-07 46.4 5.9 64 226-290 13-77 (84)
142 PRK11556 multidrug efflux syst 95.7 0.013 2.9E-07 64.8 5.3 63 226-289 95-230 (415)
143 COG0509 GcvH Glycine cleavage 95.7 0.0096 2.1E-07 54.6 3.4 44 227-270 39-83 (131)
144 PRK11578 macrolide transporter 95.7 0.017 3.7E-07 62.9 5.9 33 257-290 185-220 (370)
145 PF12700 HlyD_2: HlyD family s 95.6 0.0082 1.8E-07 63.6 2.9 63 226-290 29-193 (328)
146 PF13375 RnfC_N: RnfC Barrel s 95.0 0.092 2E-06 46.5 7.4 47 101-148 39-85 (101)
147 TIGR03309 matur_yqeB selenium- 94.3 0.1 2.2E-06 53.4 6.7 57 229-291 174-230 (256)
148 KOG3373 Glycine cleavage syste 94.3 0.097 2.1E-06 49.4 5.9 42 109-150 89-130 (172)
149 TIGR00999 8a0102 Membrane Fusi 94.1 0.085 1.8E-06 54.2 5.9 33 257-290 90-122 (265)
150 PF05896 NQRA: Na(+)-transloca 93.6 0.086 1.9E-06 54.2 4.7 42 104-150 41-84 (257)
151 cd06253 M14_ASTE_ASPA_like_3 A 93.5 0.2 4.3E-06 53.1 7.4 58 101-161 237-297 (298)
152 cd06250 M14_PaAOTO_like An unc 93.5 0.21 4.5E-06 54.3 7.6 59 100-161 296-358 (359)
153 cd06251 M14_ASTE_ASPA_like_1 A 93.4 0.25 5.4E-06 52.0 7.8 58 101-161 227-286 (287)
154 PF13375 RnfC_N: RnfC Barrel s 93.1 0.14 3E-06 45.3 4.5 43 227-270 39-81 (101)
155 cd06252 M14_ASTE_ASPA_like_2 A 92.6 0.42 9E-06 51.1 8.3 59 101-162 252-314 (316)
156 TIGR02994 ectoine_eutE ectoine 92.4 0.34 7.4E-06 51.9 7.3 58 101-161 263-324 (325)
157 PF13437 HlyD_3: HlyD family s 92.2 0.18 4E-06 44.2 4.1 33 131-164 1-33 (105)
158 cd06251 M14_ASTE_ASPA_like_1 A 91.7 0.41 8.8E-06 50.4 6.8 58 227-287 227-286 (287)
159 cd06253 M14_ASTE_ASPA_like_3 A 91.5 0.38 8.1E-06 51.0 6.3 58 227-287 237-297 (298)
160 PF00529 HlyD: HlyD family sec 91.4 0.13 2.8E-06 53.8 2.8 35 130-165 2-36 (305)
161 PF09891 DUF2118: Uncharacteri 91.0 0.34 7.3E-06 45.8 4.7 50 99-148 87-137 (150)
162 PF13437 HlyD_3: HlyD family s 90.8 0.33 7.1E-06 42.6 4.4 33 257-290 1-33 (105)
163 COG3608 Predicted deacylase [G 90.3 0.76 1.6E-05 49.0 7.1 60 100-162 263-325 (331)
164 TIGR02971 heterocyst_DevB ABC 90.2 0.34 7.4E-06 51.7 4.6 42 122-164 6-50 (327)
165 cd06250 M14_PaAOTO_like An unc 90.2 0.58 1.3E-05 50.9 6.4 59 226-287 296-358 (359)
166 COG3608 Predicted deacylase [G 90.1 0.77 1.7E-05 48.9 7.0 62 225-289 262-326 (331)
167 TIGR02946 acyl_WS_DGAT acyltra 90.0 10 0.00023 42.0 16.4 165 436-633 231-441 (446)
168 cd06252 M14_ASTE_ASPA_like_2 A 89.9 0.82 1.8E-05 48.8 7.1 59 227-288 252-314 (316)
169 COG1726 NqrA Na+-transporting 89.5 0.39 8.5E-06 51.0 4.2 40 105-147 42-83 (447)
170 PF05896 NQRA: Na(+)-transloca 89.4 0.35 7.6E-06 49.7 3.7 42 227-271 38-81 (257)
171 cd06254 M14_ASTE_ASPA_like_4 A 89.3 0.86 1.9E-05 48.0 6.7 56 100-158 230-287 (288)
172 PF07247 AATase: Alcohol acety 89.1 5.4 0.00012 44.8 13.4 29 603-631 451-480 (480)
173 TIGR01936 nqrA NADH:ubiquinone 88.2 0.48 1E-05 52.9 4.1 44 101-145 38-81 (447)
174 TIGR02994 ectoine_eutE ectoine 87.8 1.2 2.6E-05 47.7 6.7 58 227-287 263-324 (325)
175 PRK14844 bifunctional DNA-dire 87.7 2.3 5E-05 56.0 9.9 42 105-148 2423-2464(2836)
176 TIGR01843 type_I_hlyD type I s 87.6 0.71 1.5E-05 50.7 4.9 43 122-165 36-78 (423)
177 TIGR01000 bacteriocin_acc bact 87.1 0.77 1.7E-05 51.6 4.9 36 129-165 59-94 (457)
178 TIGR03794 NHPM_micro_HlyD NHPM 87.1 0.74 1.6E-05 51.0 4.8 36 129-165 58-93 (421)
179 PF07831 PYNP_C: Pyrimidine nu 86.5 0.6 1.3E-05 39.0 2.7 23 104-126 34-56 (75)
180 PF00529 HlyD: HlyD family sec 86.2 0.6 1.3E-05 48.8 3.3 33 256-289 2-34 (305)
181 PRK05352 Na(+)-translocating N 86.1 0.67 1.5E-05 51.8 3.7 44 101-145 39-82 (448)
182 PF09891 DUF2118: Uncharacteri 85.2 1.3 2.8E-05 42.0 4.5 45 226-270 88-133 (150)
183 TIGR01945 rnfC electron transp 84.6 0.94 2E-05 50.6 4.0 40 104-144 43-82 (435)
184 KOG3373 Glycine cleavage syste 84.4 0.71 1.5E-05 43.8 2.4 42 235-276 89-130 (172)
185 TIGR00999 8a0102 Membrane Fusi 84.1 1.3 2.9E-05 45.3 4.6 36 129-165 88-123 (265)
186 PRK05352 Na(+)-translocating N 84.0 1.8 3.9E-05 48.5 5.8 44 227-271 39-82 (448)
187 cd06254 M14_ASTE_ASPA_like_4 A 84.0 1.7 3.8E-05 45.7 5.5 55 227-284 231-287 (288)
188 TIGR01936 nqrA NADH:ubiquinone 83.1 1.6 3.4E-05 48.9 4.9 45 226-271 37-81 (447)
189 PF07831 PYNP_C: Pyrimidine nu 82.2 1.1 2.3E-05 37.5 2.4 28 226-253 30-57 (75)
190 cd06255 M14_ASTE_ASPA_like_5 A 81.5 3.6 7.8E-05 43.5 6.7 43 101-143 239-283 (293)
191 COG0845 AcrA Membrane-fusion p 80.3 3.3 7.3E-05 43.5 6.1 46 117-164 55-100 (372)
192 TIGR01000 bacteriocin_acc bact 79.3 2.8 6.1E-05 47.1 5.3 40 249-289 53-92 (457)
193 TIGR01945 rnfC electron transp 79.2 2 4.2E-05 48.1 4.0 43 227-270 40-82 (435)
194 TIGR03794 NHPM_micro_HlyD NHPM 79.1 2.8 6.1E-05 46.5 5.2 38 252-290 55-92 (421)
195 TIGR01843 type_I_hlyD type I s 78.5 2.8 6.1E-05 45.9 5.0 43 247-290 35-77 (423)
196 PRK05035 electron transport co 78.3 1.8 3.8E-05 51.1 3.4 54 84-144 34-88 (695)
197 PF02749 QRPTase_N: Quinolinat 78.2 2 4.3E-05 36.9 2.9 24 101-125 45-68 (88)
198 COG4656 RnfC Predicted NADH:ub 78.0 2.1 4.6E-05 48.0 3.7 44 104-149 45-91 (529)
199 TIGR00164 PS_decarb_rel phosph 77.3 3.7 8.1E-05 40.5 4.9 53 101-159 130-182 (189)
200 COG1726 NqrA Na+-transporting 77.0 2.5 5.3E-05 45.2 3.6 38 231-271 42-81 (447)
201 PF00668 Condensation: Condens 76.9 60 0.0013 32.8 14.1 33 603-635 128-160 (301)
202 COG1566 EmrA Multidrug resista 76.9 2.9 6.2E-05 45.3 4.3 36 129-165 53-88 (352)
203 PRK05305 phosphatidylserine de 76.6 34 0.00073 34.2 11.6 52 227-284 150-201 (206)
204 PRK05305 phosphatidylserine de 76.6 3.8 8.3E-05 41.0 4.8 52 101-158 150-201 (206)
205 cd06255 M14_ASTE_ASPA_like_5 A 75.1 4.7 0.0001 42.6 5.3 43 227-269 239-283 (293)
206 PRK09294 acyltransferase PapA5 74.8 62 0.0013 35.5 14.3 34 439-478 211-247 (416)
207 COG2190 NagE Phosphotransferas 73.5 7.6 0.00017 37.1 5.6 29 100-128 85-113 (156)
208 PRK09603 bifunctional DNA-dire 73.0 10 0.00022 50.5 8.3 35 105-141 2514-2559(2890)
209 PF04952 AstE_AspA: Succinylgl 72.8 7.9 0.00017 40.5 6.3 59 101-162 228-290 (292)
210 PRK05035 electron transport co 71.9 6.5 0.00014 46.5 5.9 43 227-270 46-88 (695)
211 COG4072 Uncharacterized protei 71.7 8.3 0.00018 35.6 5.2 46 99-144 98-144 (161)
212 COG1566 EmrA Multidrug resista 71.2 4.2 9E-05 44.1 3.8 34 132-166 211-244 (352)
213 TIGR00830 PTBA PTS system, glu 70.1 3.4 7.3E-05 37.9 2.4 27 100-126 78-104 (121)
214 PF02749 QRPTase_N: Quinolinat 69.2 3.2 6.9E-05 35.6 1.9 26 227-252 44-69 (88)
215 cd00210 PTS_IIA_glc PTS_IIA, P 69.0 4.5 9.8E-05 37.2 3.0 27 100-126 78-104 (124)
216 PRK09439 PTS system glucose-sp 68.8 9.4 0.0002 37.1 5.3 20 268-288 105-124 (169)
217 PRK09439 PTS system glucose-sp 68.2 10 0.00022 36.9 5.3 28 100-127 100-127 (169)
218 COG4656 RnfC Predicted NADH:ub 68.0 4.4 9.6E-05 45.5 3.2 42 227-270 42-83 (529)
219 TIGR01995 PTS-II-ABC-beta PTS 65.2 8.4 0.00018 45.0 5.0 61 100-161 542-609 (610)
220 PF04952 AstE_AspA: Succinylgl 65.0 13 0.00029 38.8 6.1 59 227-288 228-290 (292)
221 COG0845 AcrA Membrane-fusion p 61.4 14 0.0003 38.8 5.5 42 246-289 58-99 (372)
222 PF02666 PS_Dcarbxylase: Phosp 60.0 12 0.00025 37.3 4.3 68 89-160 134-202 (202)
223 PF00358 PTS_EIIA_1: phosphoen 59.2 2.8 6E-05 39.0 -0.3 29 100-128 82-110 (132)
224 PRK09824 PTS system beta-gluco 57.1 14 0.00031 43.2 4.9 59 100-161 558-625 (627)
225 COG2190 NagE Phosphotransferas 56.9 19 0.0004 34.5 4.8 29 226-254 85-113 (156)
226 TIGR00830 PTBA PTS system, glu 55.7 9.1 0.0002 35.1 2.4 28 226-253 78-105 (121)
227 cd00210 PTS_IIA_glc PTS_IIA, P 55.3 9.3 0.0002 35.2 2.4 28 226-253 78-105 (124)
228 PF00358 PTS_EIIA_1: phosphoen 54.4 7.9 0.00017 36.0 1.8 29 226-254 82-110 (132)
229 COG0157 NadC Nicotinate-nucleo 54.1 12 0.00027 39.0 3.3 23 104-126 66-88 (280)
230 COG4072 Uncharacterized protei 53.3 19 0.00042 33.3 4.0 44 226-269 99-143 (161)
231 PRK10255 PTS system N-acetyl g 51.7 20 0.00043 42.1 5.0 29 100-128 578-606 (648)
232 TIGR02645 ARCH_P_rylase putati 49.3 26 0.00057 39.6 5.3 43 247-290 405-471 (493)
233 PRK03934 phosphatidylserine de 49.0 22 0.00048 37.0 4.4 54 103-161 212-265 (265)
234 TIGR00164 PS_decarb_rel phosph 46.7 27 0.00059 34.4 4.4 52 228-285 131-182 (189)
235 PRK03140 phosphatidylserine de 44.4 24 0.00053 36.6 3.8 52 108-161 207-258 (259)
236 TIGR02645 ARCH_P_rylase putati 41.4 36 0.00077 38.6 4.7 41 123-164 407-471 (493)
237 TIGR01042 V-ATPase_V1_A V-type 41.0 46 0.001 38.5 5.6 56 107-165 123-181 (591)
238 PRK08072 nicotinate-nucleotide 40.9 27 0.00059 36.6 3.6 23 104-126 66-88 (277)
239 PRK02597 rpoC2 DNA-directed RN 40.3 63 0.0014 40.9 7.0 35 106-140 405-446 (1331)
240 PF02458 Transferase: Transfer 40.2 32 0.00068 37.9 4.2 32 603-634 146-177 (432)
241 cd01134 V_A-ATPase_A V/A-type 40.2 56 0.0012 35.6 5.8 70 89-165 38-112 (369)
242 COG0157 NadC Nicotinate-nucleo 39.6 21 0.00046 37.3 2.4 25 228-252 64-88 (280)
243 TIGR02643 T_phosphoryl thymidi 39.1 23 0.0005 39.5 2.8 21 104-124 382-402 (437)
244 PLN02663 hydroxycinnamoyl-CoA: 38.8 30 0.00066 38.3 3.8 30 604-633 145-174 (431)
245 PRK05820 deoA thymidine phosph 38.7 24 0.00052 39.5 2.8 27 98-124 377-403 (440)
246 PLN00140 alcohol acetyltransfe 38.7 31 0.00067 38.5 3.8 30 604-633 148-177 (444)
247 PRK04350 thymidine phosphoryla 38.7 47 0.001 37.7 5.1 41 248-289 398-462 (490)
248 cd01572 QPRTase Quinolinate ph 37.8 35 0.00076 35.6 3.8 26 101-126 57-82 (268)
249 PRK06543 nicotinate-nucleotide 37.7 33 0.00071 36.1 3.5 23 104-126 67-89 (281)
250 PF07247 AATase: Alcohol acety 37.3 35 0.00076 38.3 4.0 33 603-635 140-172 (480)
251 COG1155 NtpA Archaeal/vacuolar 37.1 71 0.0015 36.4 6.1 70 89-166 105-180 (588)
252 TIGR01995 PTS-II-ABC-beta PTS 37.1 33 0.00071 40.2 3.8 29 226-254 542-570 (610)
253 PRK05742 nicotinate-nucleotide 36.3 35 0.00077 35.8 3.5 23 104-126 68-90 (277)
254 TIGR03327 AMP_phos AMP phospho 36.2 46 0.001 37.8 4.6 41 249-290 408-472 (500)
255 TIGR02643 T_phosphoryl thymidi 36.1 45 0.00098 37.2 4.5 39 250-289 334-403 (437)
256 PRK06096 molybdenum transport 35.9 36 0.00077 35.9 3.5 22 104-125 63-84 (284)
257 TIGR00163 PS_decarb phosphatid 35.8 32 0.00069 35.3 3.0 48 111-160 189-236 (238)
258 PLN02481 Omega-hydroxypalmitat 35.6 38 0.00082 37.7 3.9 30 604-633 158-187 (436)
259 PF02666 PS_Dcarbxylase: Phosp 35.3 41 0.00088 33.4 3.7 56 227-285 145-201 (202)
260 PRK06078 pyrimidine-nucleoside 35.1 29 0.00064 38.7 2.8 30 98-127 372-401 (434)
261 TIGR02644 Y_phosphoryl pyrimid 34.6 32 0.00068 38.1 3.0 28 98-125 370-397 (405)
262 cd01568 QPRTase_NadC Quinolina 34.4 40 0.00087 35.2 3.6 23 104-126 59-81 (269)
263 cd01573 modD_like ModD; Quinol 34.2 39 0.00084 35.4 3.4 25 101-126 56-80 (272)
264 PRK06978 nicotinate-nucleotide 34.1 39 0.00085 35.7 3.4 23 104-126 84-106 (294)
265 PRK07428 nicotinate-nucleotide 34.0 39 0.00085 35.7 3.4 23 104-126 74-96 (288)
266 TIGR02644 Y_phosphoryl pyrimid 33.7 47 0.001 36.8 4.1 41 249-290 327-398 (405)
267 COG4908 Uncharacterized protei 33.7 3.7E+02 0.008 29.9 10.6 68 460-536 238-318 (439)
268 PF01551 Peptidase_M23: Peptid 33.5 88 0.0019 26.7 5.1 56 98-163 19-74 (96)
269 PLN02716 nicotinate-nucleotide 33.4 42 0.00091 35.8 3.5 25 101-126 78-102 (308)
270 PRK09016 quinolinate phosphori 33.2 41 0.0009 35.6 3.4 23 104-126 87-109 (296)
271 PRK09824 PTS system beta-gluco 32.8 43 0.00094 39.3 3.8 29 226-254 558-586 (627)
272 PRK04350 thymidine phosphoryla 32.6 37 0.00079 38.5 3.1 28 98-125 435-462 (490)
273 cd06910 M14_ASTE_ASPA_like_7 A 32.3 70 0.0015 33.3 5.0 45 108-160 226-271 (272)
274 PRK06106 nicotinate-nucleotide 32.2 45 0.00098 35.1 3.5 23 104-126 72-94 (281)
275 PF03869 Arc: Arc-like DNA bin 32.1 1.5E+02 0.0032 22.7 5.4 48 430-482 2-49 (50)
276 PRK05848 nicotinate-nucleotide 32.1 44 0.00096 35.0 3.4 23 104-126 60-82 (273)
277 PF01551 Peptidase_M23: Peptid 32.0 38 0.00081 29.0 2.5 25 102-126 51-75 (96)
278 PRK07896 nicotinate-nucleotide 31.8 45 0.00098 35.2 3.5 23 104-126 78-100 (289)
279 TIGR03327 AMP_phos AMP phospho 31.3 38 0.00082 38.5 2.9 29 97-125 443-471 (500)
280 PRK10255 PTS system N-acetyl g 31.0 70 0.0015 37.7 5.1 42 243-288 526-602 (648)
281 PLN03157 spermidine hydroxycin 30.9 48 0.001 37.0 3.7 30 604-633 146-175 (447)
282 TIGR01334 modD putative molybd 30.6 49 0.0011 34.7 3.5 25 101-126 60-84 (277)
283 cd01572 QPRTase Quinolinate ph 30.5 36 0.00077 35.6 2.4 26 227-252 57-82 (268)
284 PRK08385 nicotinate-nucleotide 30.2 50 0.0011 34.7 3.5 25 101-126 58-82 (278)
285 PRK05820 deoA thymidine phosph 30.1 57 0.0012 36.6 4.0 41 249-290 334-405 (440)
286 PRK08072 nicotinate-nucleotide 29.2 39 0.00084 35.5 2.4 22 230-251 66-87 (277)
287 TIGR00078 nadC nicotinate-nucl 29.0 56 0.0012 34.1 3.5 22 105-126 57-78 (265)
288 PRK00044 psd phosphatidylserin 28.7 53 0.0011 34.7 3.4 49 111-162 237-286 (288)
289 PRK06078 pyrimidine-nucleoside 28.7 51 0.0011 36.8 3.4 41 249-290 329-400 (434)
290 PRK04192 V-type ATP synthase s 27.2 1.2E+02 0.0025 35.4 5.9 57 107-166 123-182 (586)
291 KOG1668 Elongation factor 1 be 26.7 38 0.00083 34.4 1.7 27 105-131 181-207 (231)
292 PRK06543 nicotinate-nucleotide 26.5 47 0.001 35.0 2.5 24 229-252 66-89 (281)
293 PRK03934 phosphatidylserine de 25.7 83 0.0018 32.8 4.1 56 227-287 210-265 (265)
294 PRK09016 quinolinate phosphori 25.5 50 0.0011 35.0 2.5 23 230-252 87-109 (296)
295 PRK14844 bifunctional DNA-dire 25.1 83 0.0018 42.5 4.7 21 230-250 2422-2442(2836)
296 PRK05742 nicotinate-nucleotide 25.0 51 0.0011 34.6 2.4 23 230-252 68-90 (277)
297 PRK06096 molybdenum transport 25.0 52 0.0011 34.7 2.5 24 228-251 61-84 (284)
298 PRK07428 nicotinate-nucleotide 24.6 53 0.0011 34.7 2.4 24 229-252 73-96 (288)
299 cd01573 modD_like ModD; Quinol 24.5 53 0.0012 34.4 2.4 25 228-252 56-80 (272)
300 PRK06978 nicotinate-nucleotide 24.4 54 0.0012 34.7 2.5 23 229-251 83-105 (294)
301 KOG1668 Elongation factor 1 be 24.3 41 0.00089 34.1 1.5 27 231-257 181-207 (231)
302 TIGR01043 ATP_syn_A_arch ATP s 24.0 1.3E+02 0.0028 34.9 5.6 55 108-165 121-178 (578)
303 cd01134 V_A-ATPase_A V/A-type 23.6 1.5E+02 0.0032 32.5 5.5 56 233-291 54-112 (369)
304 PF06898 YqfD: Putative stage 23.4 91 0.002 34.3 4.1 35 107-141 211-245 (385)
305 TIGR01042 V-ATPase_V1_A V-type 23.3 1.5E+02 0.0033 34.4 5.9 56 233-291 123-181 (591)
306 cd01568 QPRTase_NadC Quinolina 23.3 57 0.0012 34.0 2.4 25 228-252 57-81 (269)
307 PLN02716 nicotinate-nucleotide 23.2 58 0.0013 34.7 2.4 23 229-251 79-101 (308)
308 PRK07896 nicotinate-nucleotide 23.1 59 0.0013 34.4 2.4 24 229-252 77-100 (289)
309 COG1155 NtpA Archaeal/vacuolar 22.9 1.5E+02 0.0033 33.8 5.7 160 95-292 15-180 (588)
310 COG0213 DeoA Thymidine phospho 22.8 1.3E+02 0.0029 33.3 5.0 42 248-290 329-401 (435)
311 PRK08662 nicotinate phosphorib 22.6 81 0.0018 34.2 3.4 25 100-126 69-93 (343)
312 PRK05848 nicotinate-nucleotide 22.2 63 0.0014 33.9 2.5 22 230-251 60-81 (273)
313 PHA01513 mnt Mnt 22.0 1.4E+02 0.0031 25.4 4.0 44 430-478 3-46 (82)
314 PRK06106 nicotinate-nucleotide 21.9 64 0.0014 33.9 2.4 24 228-251 70-93 (281)
315 TIGR01334 modD putative molybd 21.6 66 0.0014 33.8 2.5 24 228-251 60-83 (277)
316 PRK06559 nicotinate-nucleotide 21.3 91 0.002 33.0 3.4 24 103-126 72-97 (290)
317 CHL00117 rpoC2 RNA polymerase 21.3 1E+02 0.0022 39.4 4.3 35 106-140 406-448 (1364)
318 PRK10252 entF enterobactin syn 21.2 8.2E+02 0.018 31.0 12.6 29 604-632 133-161 (1296)
319 COG4942 Membrane-bound metallo 20.8 68 0.0015 35.6 2.4 39 121-164 355-393 (420)
320 PRK08385 nicotinate-nucleotide 20.8 70 0.0015 33.6 2.4 24 228-251 58-81 (278)
321 TIGR00078 nadC nicotinate-nucl 20.2 72 0.0016 33.2 2.4 22 230-251 56-77 (265)
No 1
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=2.5e-101 Score=870.49 Aligned_cols=544 Identities=27% Similarity=0.405 Sum_probs=415.9
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
+.|.||++|++|.||+|++|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++||. |++|+.|+.|+..++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~-v~vG~~ia~i~~~~~ 81 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDT-VDIGGEIAIIGEAGE 81 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCE-EeeeeeEEEEeeccc
Confidence 6799999999999999999999999999999999999999999999999999999999999999 999999999976443
Q ss_pred ccccccccccCCcccccccccc---cccc-hhhhcc-cccc---ccCCCCCCCceeeecCCCCCcccccccceeecCCCC
Q 006594 167 DIQHIPATIAGGAEAKEQSSTH---QDVK-KEAVQE-TSAS---RINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGD 238 (639)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd 238 (639)
....+.......+..+...+.. .... +.+... ..++ ..+........++.||+||++|++|+|++|+|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd 161 (590)
T TIGR02927 82 ASAEAGAEDSAAAAEPEEAPAEEAPKEEPKAAPAESVEQAPAESSAPSQGGGAATDIEMPELGESVTEGTITQWLKAVGD 161 (590)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEcCCCCCCcceEEEEEEEeCCCC
Confidence 2111111000000000000000 0000 000000 0000 001111123478999999999999999999999999
Q ss_pred ccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCc-C--CCC-C-------CCccc
Q 006594 239 KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV-K--NSV-T-------SGAEV 307 (639)
Q Consensus 239 ~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~-~--~~~-~-------~~~~~ 307 (639)
.|++||+||+|||||+++||+|+++|+|.+|++++|+. |++|++|++|.+++++..+. . ... . ..+.+
T Consensus 162 ~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (590)
T TIGR02927 162 KIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDP 240 (590)
T ss_pred EecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccccccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999999 99999999997654432110 0 000 0 00000
Q ss_pred CCC-C--CCC---C----CCcccc---c--cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594 308 KGE-K--ETH---H----DSKDVV---K--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (639)
Q Consensus 308 ~~~-~--~~~---~----~~~~~~---~--~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~ 372 (639)
..+ . ..+ . ..+..+ . ......+++||+||+||+|+||||+.|+|||++|||+++||++|+.....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~ 320 (590)
T TIGR02927 241 KKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKA 320 (590)
T ss_pred ccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhcccc
Confidence 000 0 000 0 000000 0 00112356899999999999999999999999999999999999753211
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (639)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~ 452 (639)
.. ..++.............+ ...+ .+.. ....++++|+++|||.||++|++|++++||||++.+||+|+|+++|++
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~R~~ 396 (590)
T TIGR02927 321 AA-EAPAAEAAAAAPAAAAAA-SASP-APAK-AHLRGTTQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAALRAR 396 (590)
T ss_pred cc-ccccccccccCccccccc-cCCC-cccc-ccccCceeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHHHHH
Confidence 00 000000000000000000 0000 0000 001245679999999999999999999999999999999999999999
Q ss_pred Hhhh----CCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594 453 LKEK----HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528 (639)
Q Consensus 453 ~~~~----~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~ 528 (639)
+|+. +|.|+||++||+||+++||++||.||++|+++.++|++|+++||||||++++||++|||++++.++|.+|++
T Consensus 397 l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia~ 476 (590)
T TIGR02927 397 AKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAK 476 (590)
T ss_pred HHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEecccCCcccCCHHHHHH
Confidence 9842 478999999999999999999999999998654579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608 (639)
Q Consensus 529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl 608 (639)
++++|.+++|+|+|+++||+||||||||||+||+++|+||||+||+|||++|++.++|+++++++|.+.+++|++|+|||
T Consensus 477 ~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsl 556 (590)
T TIGR02927 477 AIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPL 556 (590)
T ss_pred HHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999998875334434599999999999
Q ss_pred EecccccChHHHHHHHHHHHHHHhchhh
Q 006594 609 SADHRVFEGKVGGAFFSALCSNFSDIRR 636 (639)
Q Consensus 609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ 636 (639)
+||||||||+++++||++|+++||||..
T Consensus 557 s~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 557 TYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred eccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999873
No 2
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=7.1e-97 Score=828.42 Aligned_cols=528 Identities=26% Similarity=0.390 Sum_probs=410.6
Q ss_pred EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCcc
Q 006594 88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167 (639)
Q Consensus 88 ~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~ 167 (639)
+|+||++|+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++||. |.+|++|+.|+..+..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~-V~~G~~La~i~~~~~~ 79 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAGA 79 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCE-EeccceEEEEeccccc
Confidence 5889999987 9999999999999999999999999999999999999999999999999999 9999999999654331
Q ss_pred cccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCeee
Q 006594 168 IQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247 (639)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~ 247 (639)
.... ......++...+..+... . .....+.. ......++++||++|+ |++|+|++|+|++||.|++||+||
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~-~----~~~~~~~~--~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~ 150 (546)
T TIGR01348 80 QAQA-EAKKEAAPAPTAGAPAPA-A----QAQAAPAA--GQSSGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLI 150 (546)
T ss_pred cccc-cccccccccccccccccc-c----cccccccc--cccCCceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeE
Confidence 1100 000000000000000000 0 00000110 0011237999999999 999999999999999999999999
Q ss_pred EeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCCC-----CCcccCCCCC--CCCCCcc-
Q 006594 248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVT-----SGAEVKGEKE--THHDSKD- 319 (639)
Q Consensus 248 ~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~- 319 (639)
+|||||++++|+||++|+|.++++++|+. |++|++|+.|..++++....+.... ..+.+..+.+ .+....+
T Consensus 151 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (546)
T TIGR01348 151 TLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQ 229 (546)
T ss_pred EEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCcc
Confidence 99999999999999999999999999999 9999999999754433111100000 0000000000 0000000
Q ss_pred ccc-----cccCCCc-cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCC
Q 006594 320 VVK-----VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTST 393 (639)
Q Consensus 320 ~~~-----~~~~~~~-~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 393 (639)
.+. ....... ++||+||+||+|+||||+.|+|||++|||+++||++|+..........++ ++.... ...+
T Consensus 230 ~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~---~~~~~~-~~~~ 305 (546)
T TIGR01348 230 APAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAA---SAAGGA-PGAL 305 (546)
T ss_pred CcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeEeHHHHHHHhhccccccCcccc---cccCCc-cccC
Confidence 000 0011123 58999999999999999999999999999999999997532110000000 000000 0000
Q ss_pred CCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHH
Q 006594 394 AVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKA 470 (639)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likA 470 (639)
..+. ........++.+|+++|||.||++|.+|++++||||++.++|+|+|+++|+++|+ +.|.|+||++||+||
T Consensus 306 --~~~~-~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA 382 (546)
T TIGR01348 306 --PWPN-VDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKA 382 (546)
T ss_pred --CCcc-ccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHH
Confidence 0000 0001111245689999999999999999999999999999999999999999984 357899999999999
Q ss_pred HHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 006594 471 VAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGG 550 (639)
Q Consensus 471 va~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~gg 550 (639)
+++||++||.||++|+++...|++|+++||||||++++||++|||++++++||.+|++++++|++++|+|+|+++||+||
T Consensus 383 ~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~gg 462 (546)
T TIGR01348 383 VAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGA 462 (546)
T ss_pred HHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCC
Confidence 99999999999999986534699999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHH
Q 006594 551 TFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630 (639)
Q Consensus 551 tftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~ 630 (639)
||||||+||||+++|+||||+||++||++|++.++|++.+| ++++|++|+|||+||||++||+++++||++|+++
T Consensus 463 TfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~-----~~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~ 537 (546)
T TIGR01348 463 CFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-----EFEPRLMLPLSLSYDHRVIDGADAARFTTYICES 537 (546)
T ss_pred eEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECC-----EEEEEEEEEEeEeccchhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987654 7999999999999999999999999999999999
Q ss_pred HhchhhhcC
Q 006594 631 FSDIRRLLL 639 (639)
Q Consensus 631 Le~P~~ll~ 639 (639)
||||..||+
T Consensus 538 le~P~~ll~ 546 (546)
T TIGR01348 538 LADIRRLLL 546 (546)
T ss_pred HhCHHhhhC
Confidence 999998875
No 3
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=2.2e-93 Score=814.16 Aligned_cols=517 Identities=24% Similarity=0.337 Sum_probs=411.3
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
.+++.++||++| +.+|+|++|+|++||.|++||+||++|+||+.++|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 103 ~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~ 179 (633)
T PRK11854 103 AAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEV 179 (633)
T ss_pred CCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEec
Confidence 456789999999 89999999999999999999999999999999999999999999999999999 999999999976
Q ss_pred CCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccC
Q 006594 164 DADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVG 243 (639)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~g 243 (639)
.+...... + +. +....+ ...++ + .....+++||+|| |++|+|++|+|++||.|++|
T Consensus 180 ~~~~~~~~--~------~~-----~~~~~~-----~~~~~-~---a~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g 235 (633)
T PRK11854 180 AGEAPAAA--P------AA-----AEAAAP-----AAAPA-A---AAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAE 235 (633)
T ss_pred cccccccc--c------cc-----cccccc-----ccccc-c---cCCceEEecCCCc--ccceEEEEEEecCCCeecCC
Confidence 44321100 0 00 000000 00010 0 1234799999999 99999999999999999999
Q ss_pred CeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCC-CCCcccCC-CCCCCCCCcc--
Q 006594 244 DVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV-TSGAEVKG-EKETHHDSKD-- 319 (639)
Q Consensus 244 d~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-- 319 (639)
|+||+|||||++++|+||++|+|.+|++++|+. |++|++|+.|.+++++....+.+. ...+.+.. ..+.+...+.
T Consensus 236 ~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (633)
T PRK11854 236 QSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK 314 (633)
T ss_pred CceEEEEecceeeEeeCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCccc
Confidence 999999999999999999999999999999999 999999999975443311111100 00000000 0000000000
Q ss_pred ccc----cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCC-
Q 006594 320 VVK----VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTA- 394 (639)
Q Consensus 320 ~~~----~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~- 394 (639)
.+. .......++||+||+||+++|||++.|+||||+|||+++||++|+.........+++ ++. ...+.+.
T Consensus 315 ~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~---~~~--~~~~~~~~ 389 (633)
T PRK11854 315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA---AAA--AGGGGPGL 389 (633)
T ss_pred ccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccccCCc---ccc--cccccccc
Confidence 000 011123568999999999999999999999999999999999997532110000000 000 0000000
Q ss_pred CCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh-----hCCCCcCHHHHHHH
Q 006594 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE-----KHNTKVSVNDIVIK 469 (639)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~-----~~g~kls~~~~lik 469 (639)
...+. .........+.+|+++|||.||++|.+|++++||||++.++|+|+|+++|++++. +.|.++||++||+|
T Consensus 390 ~~~~~-~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~lik 468 (633)
T PRK11854 390 LPWPK-VDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMK 468 (633)
T ss_pred ccccc-ccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHH
Confidence 00000 0001111234579999999999999999999999999999999999999998763 34789999999999
Q ss_pred HHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 006594 470 AVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQG 549 (639)
Q Consensus 470 Ava~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~g 549 (639)
|+++||++||+||++|+++.++|++|+++||||||++++||++|||+++++++|.+|+++++++.+++|+|+|.++|++|
T Consensus 469 Ava~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~g 548 (633)
T PRK11854 469 AVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQG 548 (633)
T ss_pred HHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence 99999999999999997543569999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHH
Q 006594 550 GTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCS 629 (639)
Q Consensus 550 gtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~ 629 (639)
|||||||+||+|+++|+||||+||+|||++|++.++|+++++ .+++|++|+|||+||||++||+|+|+||++|++
T Consensus 549 gTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~-----~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~ 623 (633)
T PRK11854 549 GCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGK-----EFAPRLMLPLSLSYDHRVIDGADGARFITIIND 623 (633)
T ss_pred cEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECC-----EEEEEEEEEEeEEccchhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877554 789999999999999999999999999999999
Q ss_pred HHhchhhhcC
Q 006594 630 NFSDIRRLLL 639 (639)
Q Consensus 630 ~Le~P~~ll~ 639 (639)
+||+|..|||
T Consensus 624 ~LE~p~~ll~ 633 (633)
T PRK11854 624 RLSDIRRLVL 633 (633)
T ss_pred HHhCHHhhhC
Confidence 9999998886
No 4
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=4.6e-93 Score=801.37 Aligned_cols=534 Identities=27% Similarity=0.374 Sum_probs=410.4
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+.++||++|+ +.+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+. |.+|++|+.|++.+
T Consensus 2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~~G~~L~~i~~~~ 79 (547)
T PRK11855 2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLLAVIEAAG 79 (547)
T ss_pred CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ecCCceeeEecccc
Confidence 35799999999 99999999999999999999999999999999999999999999999999999 99999999997544
Q ss_pred cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCe
Q 006594 166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245 (639)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~ 245 (639)
..... +.+...... .+.+. ..+...+.......+ .......+++||+||+ |++|+|++|+|++||.|++||.
T Consensus 80 ~~~~~---~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~ 151 (547)
T PRK11855 80 AAAAA---AAPAAAAAP--AAAAA-AAPAPAAAAPAAAAA-AAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQS 151 (547)
T ss_pred ccccc---ccccccccc--ccccc-ccccccccccccccC-cccCCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCe
Confidence 31110 000000000 00000 000000000000000 0001237899999999 9999999999999999999999
Q ss_pred eeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCCCCCc--ccCC-CCCCCCCC--ccc
Q 006594 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGA--EVKG-EKETHHDS--KDV 320 (639)
Q Consensus 246 l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~ 320 (639)
|++|||||+.++|+||++|+|.++++++|+. |++|++|+.|.+.+++...........+ .... +.+.+... +..
T Consensus 152 l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (547)
T PRK11855 152 LITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAA 230 (547)
T ss_pred eEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCc
Confidence 9999999999999999999999999999999 9999999999765432111000000000 0000 00000000 000
Q ss_pred c--c-cccCCCc-cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCC
Q 006594 321 V--K-VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS 396 (639)
Q Consensus 321 ~--~-~~~~~~~-~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 396 (639)
. . ....+.. ++||+||+||+++|||++.|+|||++|||+++||++|+....... ..++....+.+.. ..++..
T Consensus 231 ~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ 307 (547)
T PRK11855 231 AAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAA-AAAAAAAAAAGGG--GLGLLP 307 (547)
T ss_pred cccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHHHHHhhcccccc-ccccccccccccc--cccccC
Confidence 0 0 0001223 689999999999999999999999999999999999975321110 0000000000000 000000
Q ss_pred CCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHHHHH
Q 006594 397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAV 473 (639)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likAva~ 473 (639)
.+.. ........+.+|+++|||.||++|++|++++||||++.+||+|+|+++|++++. +.|.++||++||+||+++
T Consensus 308 ~~~~-~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~ 386 (547)
T PRK11855 308 WPKV-DFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVA 386 (547)
T ss_pred Cccc-cccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 0000 000111245679999999999999999999999999999999999999999874 347899999999999999
Q ss_pred HHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEE
Q 006594 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFS 553 (639)
Q Consensus 474 Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtft 553 (639)
||++||+||++|+++.+.+++|++||||+||++++||++|+|++++.+++.+|+++++++++++|+|+|.++|++||||+
T Consensus 387 al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtft 466 (547)
T PRK11855 387 ALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFT 466 (547)
T ss_pred HHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEE
Confidence 99999999999985334599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 554 ISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 554 ISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
|||+||+|+++|+|+||+||+|||++|++.++|++.+| .+..|.+|+|||+||||+|||+|+++||+.|+++||+
T Consensus 467 iSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~-----~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~ 541 (547)
T PRK11855 467 ISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGK-----EFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLAD 541 (547)
T ss_pred EeCCccccccceecCcCCCceEEEEcccceEeeeeeCC-----EEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999855433 6899999999999999999999999999999999999
Q ss_pred hhhhcC
Q 006594 634 IRRLLL 639 (639)
Q Consensus 634 P~~ll~ 639 (639)
|+.||+
T Consensus 542 p~~ll~ 547 (547)
T PRK11855 542 PRRMLL 547 (547)
T ss_pred HHhhhC
Confidence 999875
No 5
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.8e-84 Score=703.22 Aligned_cols=399 Identities=36% Similarity=0.524 Sum_probs=334.4
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
.+++||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999976544
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (639)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~ 372 (639)
+.+..+++...++ .. +.+...++.+. .......+||+||+||+|+|||++.|+|||++|||+++||++|+.....
T Consensus 82 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~-~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~ 156 (407)
T PRK05704 82 AGAAAAAAAAAAA--AA--AAPAQAQAAAA-AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAA 156 (407)
T ss_pred ccccCCCCCCCCC--CC--CCCCCCCCCcc-CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccc
Confidence 3221111000000 00 00000001110 1112346899999999999999999999999999999999999743210
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (639)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~ 452 (639)
.. .++ +. . . ..+ .+.. . .....+.+|+++|||.|+++|.+|++++||||++.++|+|+|+++|++
T Consensus 157 ~~--~~~----~~-~-~-~~~---~~~~-~--~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~ 221 (407)
T PRK05704 157 AP--AAP----AA-A-A-PAA---APAP-L--GARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQ 221 (407)
T ss_pred cC--CCC----CC-C-C-CcC---CCcc-c--cCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHH
Confidence 00 000 00 0 0 000 0000 0 011134579999999999999999999999999999999999999999
Q ss_pred Hhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528 (639)
Q Consensus 453 ~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~ 528 (639)
+++ +.|.++||++||+||+++||++||.||++|++++ +++|+++|||+||++++||++|||++++++|+.+|++
T Consensus 222 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~ 299 (407)
T PRK05704 222 YKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDD--IVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEK 299 (407)
T ss_pred HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCe--EEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHH
Confidence 974 2478999999999999999999999999998765 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608 (639)
Q Consensus 529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl 608 (639)
++++|.+++|+|+|+++|++||||||||+|+||+.+|+||||+||+|||++|++.++|++++| ++++|++|+|||
T Consensus 300 ~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g-----~i~~r~~~~lsl 374 (407)
T PRK05704 300 KIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG-----QIVIRPMMYLAL 374 (407)
T ss_pred HHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECC-----EEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 799999999999
Q ss_pred EecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
+||||+|||+++|+||++|+++||||+.||+
T Consensus 375 s~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 405 (407)
T PRK05704 375 SYDHRIIDGKEAVGFLVTIKELLEDPERLLL 405 (407)
T ss_pred EechhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence 9999999999999999999999999998875
No 6
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=2.9e-84 Score=700.16 Aligned_cols=397 Identities=34% Similarity=0.505 Sum_probs=333.4
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
++++||+||++|++|+|++|+|++||.|++||+||+|||||+++||+|+.+|+|.++++++|+. |++|++|++|.++++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGND 79 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 999999999975433
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (639)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~ 372 (639)
..+..++ +..++...+.+.+ .++.+. .......+||+||+||+|+|||++.|+|||++|||+++||++|+.....
T Consensus 80 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~ 154 (403)
T TIGR01347 80 ATAAPPA--KSGEEKEETPAAS--AAAAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPAS 154 (403)
T ss_pred Ccccccc--cccCCCCCCCCCC--CCCCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccc
Confidence 2110000 0000000000000 011111 1122346899999999999999999999999999999999999743110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (639)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~ 452 (639)
.. .+ ... .+.+ .+.. .. ...+.+|+++|||.||++|++||+++||||++.++|+|+|+++|++
T Consensus 155 ~~--~~------~~~--~~~~---~~~~---~~-~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~ 217 (403)
T TIGR01347 155 AQ--AP------APA--AAAK---APAN---FT-RPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKR 217 (403)
T ss_pred cC--CC------CCC--cccC---Cccc---cC-CCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHH
Confidence 00 00 000 0000 0000 00 1134579999999999999999999999999999999999999999
Q ss_pred Hhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528 (639)
Q Consensus 453 ~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~ 528 (639)
++. +.|.++||++||+||+++||++||.||++|++++ |++|+++|||+||++++||++|||++++++|+.+|++
T Consensus 218 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~ 295 (403)
T TIGR01347 218 YKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDD--IVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEK 295 (403)
T ss_pred HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCE--EEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHH
Confidence 874 3478999999999999999999999999998764 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608 (639)
Q Consensus 529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl 608 (639)
++++|.+++|+|+|+++|++||||||||+|+||..+|+||||+||+|||++|++.++|++++| ++++|++|+|||
T Consensus 296 ~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g-----~i~~r~~m~lsL 370 (403)
T TIGR01347 296 EIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-----QIEIRPMMYLAL 370 (403)
T ss_pred HHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECC-----eEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 799999999999
Q ss_pred EecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
+||||++||+++|+||++|+++||+|..||+
T Consensus 371 t~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 401 (403)
T TIGR01347 371 SYDHRLIDGKEAVTFLVTIKELLEDPRRLLL 401 (403)
T ss_pred EecchhhChHHHHHHHHHHHHHhcCHHHHHh
Confidence 9999999999999999999999999998875
No 7
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=5.5e-84 Score=712.28 Aligned_cols=407 Identities=44% Similarity=0.728 Sum_probs=337.4
Q ss_pred CCCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEE
Q 006594 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIA 285 (639)
Q Consensus 207 ~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~ 285 (639)
+..|++.+++||+||++|++|+|++|+|++||.|++||+||+|||||+++|++++++|+|.+|++++|+ . |++|++|+
T Consensus 107 ~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~-v~vG~~ia 185 (539)
T PLN02744 107 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE-IKVGEVIA 185 (539)
T ss_pred ccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc-cCCCCEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999996 6 99999999
Q ss_pred EEecCCCCcCCcC--------CCCCCCc--ccCCCC-C---CCCCCcc--ccc--c--ccCCCccCChhHHhhHHHcCCC
Q 006594 286 ITVEDPGDVGTVK--------NSVTSGA--EVKGEK-E---THHDSKD--VVK--V--QKGSFTKISPSAKLLILEHGLD 345 (639)
Q Consensus 286 ~i~~~~~~~~~~~--------~~~~~~~--~~~~~~-~---~~~~~~~--~~~--~--~~~~~~~asP~ar~lA~e~gID 345 (639)
+|.+++++.+.+. ....+++ .+..+. + .+...+. .+. . ......++||+||+||+|+|||
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVD 265 (539)
T PLN02744 186 ITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVP 265 (539)
T ss_pred EEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCC
Confidence 9965444321110 0000000 000000 0 0000000 000 0 0112346899999999999999
Q ss_pred cccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHh
Q 006594 346 ASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425 (639)
Q Consensus 346 ls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m 425 (639)
++.|+||||+|||+++||++|+....... . .+ .+ .+ . ..+. ...+++|+++|||.||++|
T Consensus 266 Ls~V~GTGp~GRI~k~DV~a~~~~~~~~~--~-------~~-~~--~~-----~--~~~~-~~~~~vpls~~Rk~IA~~m 325 (539)
T PLN02744 266 LSSIKGTGPDGRIVKADIEDYLASGGKGA--T-------AP-PS--TD-----S--KAPA-LDYTDIPNTQIRKVTASRL 325 (539)
T ss_pred HHHCCCCCCCCcccHHHHHHHhhcccccc--C-------CC-CC--cc-----c--CCCC-CccccccchhHHHHHHHHH
Confidence 99999999999999999999975321000 0 00 00 00 0 0000 1235689999999999999
Q ss_pred hhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEE
Q 006594 426 LESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS 501 (639)
Q Consensus 426 ~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~ 501 (639)
++|++++||||++.++|+|+|+++|+++|. +.|.|+||++||+||+++||++||+||++|+++. |++|++||||
T Consensus 326 ~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~--i~~~~~vnIg 403 (539)
T PLN02744 326 LQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDY--IRQYHNVNIN 403 (539)
T ss_pred HHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCc--EEEeCCcceE
Confidence 999999999999999999999999999974 2378999999999999999999999999998765 9999999999
Q ss_pred EEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCC-CCCccceeeccCCCcceEEEec
Q 006594 502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG-MFPVDQFCAIINPPQAGILAVG 580 (639)
Q Consensus 502 iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG-~~g~~~~~pii~~p~~ail~vG 580 (639)
+||++++||++|||++++++++.+|++++++|.+++|+|+|+++||+||||||||+| +||+.+|+||||+||+|||++|
T Consensus 404 vAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG 483 (539)
T PLN02744 404 VAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVG 483 (539)
T ss_pred EEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999998 8999999999999999999999
Q ss_pred CceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 581 RGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 581 ~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
++.++|++.. .+| ++++|++|+|||+||||||||+++|+||++|+++||||+.||+
T Consensus 484 ~i~~~pvv~~-~~g--~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 484 SAEKRVIPGS-GPD--QYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred cceeEeEEec-cCC--eEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 9999987742 233 7999999999999999999999999999999999999999886
No 8
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.1e-83 Score=676.25 Aligned_cols=416 Identities=49% Similarity=0.735 Sum_probs=352.7
Q ss_pred CCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 209 ~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.+.|.+|.||.|+++|++|+|++|+++|||.+.+||+||||||||++|++|++++|++++|+++||..||+||.+||+|+
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCCCcCCcCCCCC------CCcccCC-CCCCC---CCCc---cc-----ccc-ccCCCccCChhHHhhHHHcCCCcccc
Q 006594 289 EDPGDVGTVKNSVT------SGAEVKG-EKETH---HDSK---DV-----VKV-QKGSFTKISPSAKLLILEHGLDASSL 349 (639)
Q Consensus 289 ~~~~~~~~~~~~~~------~~~~~~~-~~~~~---~~~~---~~-----~~~-~~~~~~~asP~ar~lA~e~gIDls~v 349 (639)
+++++++++..... ..+.+++ +++++ .+.+ +. +.. ..+...++||.||+||.++|||++.|
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i 194 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI 194 (470)
T ss_pred cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence 99998876632111 0111111 01100 0011 00 101 11235679999999999999999999
Q ss_pred cccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhcc
Q 006594 350 QASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK 429 (639)
Q Consensus 350 ~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~ 429 (639)
.||||+|||++.||++|++.+.......+ .+..+..++ +++. .....|+++|+++||+.|+++|.+|+
T Consensus 195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~------~~~~~~~~~-----~a~~-~~~~~~~diP~s~mr~viakrl~eSk 262 (470)
T KOG0557|consen 195 PGTGPHGRILKGDIEKHVGSGKKKSAKAP------KASAPPPAP-----AAPP-VSLPGYEDIPVSNMRRVIAKRLLESK 262 (470)
T ss_pred cCcCCCceeehhhHHHhhcccccccccCC------CccCCCcCc-----cCCc-CCCCcccccccchhhhhhhhhhhhhh
Confidence 99999999999999999876431111110 000011111 1111 12224899999999999999999999
Q ss_pred CCcceEEeeeeeechHHHHHHHHHh-hhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC
Q 006594 430 QNTPHLYLSSDVVLDPLLSFRKELK-EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508 (639)
Q Consensus 430 ~~iP~~~~~~evDvt~l~~~rk~~~-~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~ 508 (639)
+.+||||++.++++++|+++|+++| ++.+.++|+++|++||++.||.++|+.|++|+++ ..|+++++|||++||++++
T Consensus 263 ~~IPh~yvt~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat~~ 341 (470)
T KOG0557|consen 263 QTIPHYYVTVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVATPN 341 (470)
T ss_pred cCCCeEEEeeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeeccC
Confidence 9999999999999999999999998 5677899999999999999999999999999985 4599999999999999999
Q ss_pred CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEE
Q 006594 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588 (639)
Q Consensus 509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~ 588 (639)
||++|+|+|++.+.+.+|.+++.+|.+++|.|+|.+++|+||||+||||||||++.|+.||||||.+||++|...+..++
T Consensus 342 GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~ 421 (470)
T KOG0557|consen 342 GLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVP 421 (470)
T ss_pred cccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred eeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 589 ~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
. .|+.+++.....|+|+|++|||++||+.+++||+.|+++||||..|||
T Consensus 422 d--~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 422 D--ANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred C--CCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 3 344457899999999999999999999999999999999999999986
No 9
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=7.1e-82 Score=689.04 Aligned_cols=410 Identities=48% Similarity=0.700 Sum_probs=333.7
Q ss_pred eeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCC
Q 006594 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGD 293 (639)
Q Consensus 214 ~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~ 293 (639)
+++||++|.+|++|+|.+|+|++||.|+.||+||+|||||++++|+|+++|+|.++++++|+..|++|++|++|.+++++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 47899999999999999999999999999999999999999999999999999999999998559999999999754433
Q ss_pred cC-CcC------C--CCCCCccc-C-C---CCC--CCCCCcccc---cc----ccCCCccCChhHHhhHHHcCCCccccc
Q 006594 294 VG-TVK------N--SVTSGAEV-K-G---EKE--THHDSKDVV---KV----QKGSFTKISPSAKLLILEHGLDASSLQ 350 (639)
Q Consensus 294 ~~-~~~------~--~~~~~~~~-~-~---~~~--~~~~~~~~~---~~----~~~~~~~asP~ar~lA~e~gIDls~v~ 350 (639)
.+ +.+ . ...+.+.+ . . +.+ .+....+.+ .. .....+++||+||+||+|+|||++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 22 100 0 00000000 0 0 000 000000000 00 011235689999999999999999999
Q ss_pred ccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccC
Q 006594 351 ASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQ 430 (639)
Q Consensus 351 gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~ 430 (639)
|||++|||+++||++|+.... ...+.+ . +.+ .+... ...........+.+|+++|||.|+++|++|++
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~-~~~~~~---~-~~~-----~~~~~--~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~ 228 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSP-ASANFQ---A-AAT-----TPATK--KAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQ 228 (435)
T ss_pred CCCCCCceeHHHHHHHHhccc-ccCCCc---c-ccc-----ccccc--ccCCCccCCcceeecccHHHHHHHHHHHHHHh
Confidence 999999999999999985311 000000 0 000 00000 00000011124567999999999999999999
Q ss_pred CcceEEeeeeeechHHHHHHHHHhhhC--CCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC
Q 006594 431 NTPHLYLSSDVVLDPLLSFRKELKEKH--NTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508 (639)
Q Consensus 431 ~iP~~~~~~evDvt~l~~~rk~~~~~~--g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~ 508 (639)
++||||++.++|+|+|+++|+++++.. |.++||++||+||+++||++||.||++|+++. |++|++|||||||++++
T Consensus 229 ~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~--i~~~~~vnigvAv~~~~ 306 (435)
T TIGR01349 229 TIPHYYVSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTDNF--IRRYKNVDISVAVATPD 306 (435)
T ss_pred hCCeEEEEEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeCCe--EEEeCCeeEEEEEECCC
Confidence 999999999999999999999998532 78999999999999999999999999998754 99999999999999999
Q ss_pred CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEE
Q 006594 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588 (639)
Q Consensus 509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~ 588 (639)
||++|||++++++|+.+|+++++++.+++|+|+|.++||+||||||||+|++|..+|+||||+||++||++|++.+++++
T Consensus 307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~ 386 (435)
T TIGR01349 307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV 386 (435)
T ss_pred CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 589 ~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
++|.++ .+++|++|+|||+||||++||+++++||++|+++||+|+.||+
T Consensus 387 ~~~~~~--~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 387 DNDEEK--GFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred eCCccc--eeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 765222 4999999999999999999999999999999999999998875
No 10
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.8e-81 Score=682.25 Aligned_cols=410 Identities=24% Similarity=0.353 Sum_probs=331.6
Q ss_pred eecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCc
Q 006594 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294 (639)
Q Consensus 215 ~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~ 294 (639)
++||+||++|++|+|++|+|++||.|++||+||++||||+.++++++.+|+|.++++++|+. +++|++|+.|..++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999 99999999996544332
Q ss_pred CCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCcc
Q 006594 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSS 374 (639)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~ 374 (639)
+..... ..+.. +.+.+....+.+........++||+||+||+++|||++.|+|||++|||+++||++|+.......
T Consensus 80 ~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~ 155 (416)
T PLN02528 80 LRSDSL--LLPTD--SSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVK 155 (416)
T ss_pred ccccCC--CCCCC--CccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccc
Confidence 110000 00000 00000000000001111234689999999999999999999999999999999999975321100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh
Q 006594 375 RISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK 454 (639)
Q Consensus 375 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~ 454 (639)
.+..+ ..+.. +...+....+..+. ......+.+|+++|||.||++|.+|+ ++||||++.+||+|+|+++|++++
T Consensus 156 ~~~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~ 229 (416)
T PLN02528 156 DSSSA-EEATI---AEQEEFSTSVSTPT-EQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQ 229 (416)
T ss_pred ccccc-ccccC---CccccccccCCCcc-cccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHh
Confidence 00000 00000 00000000000000 00101345799999999999999996 999999999999999999999987
Q ss_pred h---hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHH
Q 006594 455 E---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVK 531 (639)
Q Consensus 455 ~---~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~ 531 (639)
+ ..|.++||++||+||+++||++||.||++|+++..+|++|+++||||||++++||++|||++++.+++.+|+++++
T Consensus 230 ~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~ 309 (416)
T PLN02528 230 ENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELS 309 (416)
T ss_pred hhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHH
Confidence 4 3578999999999999999999999999998764469999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEec
Q 006594 532 ELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSAD 611 (639)
Q Consensus 532 ~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~D 611 (639)
+|++++|+|+|+++|++||||||||+|++|..+|+||||+||+|||++|++.++|++++ +| ++.+|++|+|||+||
T Consensus 310 ~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~--~g--~i~~r~~m~lslt~D 385 (416)
T PLN02528 310 RLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVD--DG--NVYPASIMTVTIGAD 385 (416)
T ss_pred HHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeC--CC--cEEEEeEEEEeEecc
Confidence 99999999999999999999999999999999999999999999999999999998763 23 799999999999999
Q ss_pred ccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 612 HRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 612 HRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
||||||+++++||++|+++||||+.||+
T Consensus 386 HRviDGa~aa~Fl~~lk~~le~P~~lll 413 (416)
T PLN02528 386 HRVLDGATVARFCNEWKSYVEKPELLML 413 (416)
T ss_pred chhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence 9999999999999999999999999875
No 11
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=6.5e-79 Score=659.34 Aligned_cols=398 Identities=41% Similarity=0.595 Sum_probs=339.2
Q ss_pred ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++|++ |++|++|++|.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~~ 80 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEEG 80 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999 99999999998876
Q ss_pred CCcCCcCCCCCCCcccCCCCCCCCCCcccc-ccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594 292 GDVGTVKNSVTSGAEVKGEKETHHDSKDVV-KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370 (639)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~ 370 (639)
++.++..+.. . ++.+.+....+.+ .........+||++|++|+|+|||++.+.|||++|||++.|+..+....
T Consensus 81 ~~~~a~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~ 154 (404)
T COG0508 81 ADAPAAAEAP-P-----EPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK 154 (404)
T ss_pred CcccccCccc-C-----CccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccc
Confidence 6531111100 0 0000000000000 0001145679999999999999999999999999999999999987643
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHH
Q 006594 371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR 450 (639)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r 450 (639)
.. . + +.+ .+ ..+ .+. .....++++|++++||.|+++|.+|+.++||+|.+.++|++.|+++|
T Consensus 155 ~~-~--~------~~~-~~-~~~---~~~----~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr 216 (404)
T COG0508 155 AA-A--A------AAP-AP-AAA---APA----SAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALR 216 (404)
T ss_pred cc-c--c------ccc-cc-ccC---Ccc----cccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHH
Confidence 00 0 0 000 00 000 000 12235778899999999999999999999999999999999999999
Q ss_pred HHHhhh---CCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHH
Q 006594 451 KELKEK---HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAIS 527 (639)
Q Consensus 451 k~~~~~---~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~ 527 (639)
++++.. .|.|+||++|++||++.||+++|.+|++++++...+++++++|||+||++++||++|||++++++++.+|+
T Consensus 217 ~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~ 296 (404)
T COG0508 217 KKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIA 296 (404)
T ss_pred HHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHH
Confidence 999842 28999999999999999999999999888864115999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEE
Q 006594 528 MEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607 (639)
Q Consensus 528 ~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~ls 607 (639)
+++.+|..++|+|+|+++||+||||||||+|++|...|+||||+||++||++|++.++|++.++ ++++|++|+|+
T Consensus 297 ~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~-----~i~~~~mm~ls 371 (404)
T COG0508 297 KEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGG-----EIVVRPMMYLS 371 (404)
T ss_pred HHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecC-----ceeeEeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999999988766 89999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 608 LSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 608 lt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|+||||++||+++++||..++++||+|..||+
T Consensus 372 ls~DHRviDGa~aa~Fl~~ik~~le~p~~ll~ 403 (404)
T COG0508 372 LSYDHRVIDGAEAARFLVALKELLEDPERLLL 403 (404)
T ss_pred ccccccccccHHHHHHHHHHHHHhcChhhhhc
Confidence 99999999999999999999999999998875
No 12
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=3e-76 Score=645.36 Aligned_cols=401 Identities=39% Similarity=0.589 Sum_probs=333.1
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
.++.||++|++|.+|+|.+|+|++||.|+.||+|++|||||+.++++||++|+|.++++++|+. |++|++|+.|.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEGE 81 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 999999999976554
Q ss_pred -CcCCcCCCCCCCcccCCCC-CCC--CCCcccc---ccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHH
Q 006594 293 -DVGTVKNSVTSGAEVKGEK-ETH--HDSKDVV---KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365 (639)
Q Consensus 293 -~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~---~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~ 365 (639)
+.+..+++....+.+.+.. ..+ ...++.. ........++||+||+||+++|||++.|+|||++|||+++||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~ 161 (411)
T PRK11856 82 AEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEA 161 (411)
T ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHH
Confidence 3211111000000000000 000 0000000 00011123689999999999999999999999999999999999
Q ss_pred HHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechH
Q 006594 366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDP 445 (639)
Q Consensus 366 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~ 445 (639)
|+....... .+ .+ .+ + ...+. ......+.+|++++||.||++|.+|++++||||++.+||+|+
T Consensus 162 ~~~~~~~~~--~~---~~----~~---~-~~~~~----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~ 224 (411)
T PRK11856 162 AAAAAAPAA--AA---AA----AA---A-AAPPA----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTA 224 (411)
T ss_pred HHhcccccC--CC---CC----CC---C-CCCCc----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHH
Confidence 985321100 00 00 00 0 00000 001124568999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHH
Q 006594 446 LLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525 (639)
Q Consensus 446 l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~e 525 (639)
|++++|++++. +.++||++||+||+++||++||+||++|++++ +++|++||||+||++++||++|+|+++++++|.+
T Consensus 225 l~~~~k~~~~~-~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~--i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e 301 (411)
T PRK11856 225 LLALRKQLKAI-GVKLTVTDFLIKAVALALKKFPELNASWDDDA--IVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFE 301 (411)
T ss_pred HHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhCcHhheEEeCCE--EEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHH
Confidence 99999999643 47999999999999999999999999998865 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEE
Q 006594 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMN 605 (639)
Q Consensus 526 i~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~ 605 (639)
|+++++++++++|+|+|.++|+++|||+|||+||+|..+|+|+||+||++||++|++.+++++.+| ++++|.+||
T Consensus 302 i~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g-----~~~~~~~m~ 376 (411)
T PRK11856 302 LAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-----EIVVRKVMP 376 (411)
T ss_pred HHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECC-----EEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999887655 799999999
Q ss_pred EEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 606 LTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 606 lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|||+||||++||+|+++||+.|+++||+|+.||+
T Consensus 377 lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 410 (411)
T PRK11856 377 LSLSFDHRVIDGADAARFLKALKELLENPALLLL 410 (411)
T ss_pred EeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence 9999999999999999999999999999999875
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=4.6e-75 Score=629.30 Aligned_cols=366 Identities=28% Similarity=0.418 Sum_probs=299.7
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
.+++||+||++|++|+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++||. |++|++|++|.++++
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~~~~~ 170 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIISKSED 170 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEeccCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999 999999999964432
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV 372 (639)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~ 372 (639)
+.+. .. .. ..++.. . .+.+.. +..|++ +++++++.+.-. .+....
T Consensus 171 ~~~~-~~--~~---~~~~~~--~--~~~~~~---------~~~~~~--~~~v~asp~~r~--------------~~~~~~ 215 (463)
T PLN02226 171 AASQ-VT--PS---QKIPET--T--DPKPSP---------PAEDKQ--KPKVESAPVAEK--------------PKAPSS 215 (463)
T ss_pred cccc-cC--cc---CCCCCC--C--CCCCCC---------cccccc--ccCCCcchhhcc--------------ccCCCC
Confidence 2110 00 00 000000 0 000000 001111 445555555400 000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594 373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452 (639)
Q Consensus 373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~ 452 (639)
+.+ + . .+ ...+. .......+.+|+++|||.||++|.+|++++||||++.++|+|+|+++|++
T Consensus 216 ~~~--------~-----~-~~-~~~~~---~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~ 277 (463)
T PLN02226 216 PPP--------P-----K-QS-AKEPQ---LPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ 277 (463)
T ss_pred CCC--------C-----c-cc-ccCcc---cccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHH
Confidence 000 0 0 00 00000 00000134579999999999999999999999999999999999999999
Q ss_pred Hhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528 (639)
Q Consensus 453 ~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~ 528 (639)
++. +.|.++||++||+||+++||++||.||+.|+++. |++|++|||||||++++||++|||++++++++.+|++
T Consensus 278 l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~--i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ 355 (463)
T PLN02226 278 YKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDD--IIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEK 355 (463)
T ss_pred HHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCE--EEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHH
Confidence 874 3488999999999999999999999999998764 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608 (639)
Q Consensus 529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl 608 (639)
++++|++++|+|+|+++|++||||||||+|+||+++|+||||+||++||++|++.++|++++| ++++|++|+|||
T Consensus 356 ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g-----~i~~r~~m~lsL 430 (463)
T PLN02226 356 TINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG-----SVVPRPMMYVAL 430 (463)
T ss_pred HHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECC-----EEEEEeEEEEeE
Confidence 999999999999999999999999999999999999999999999999999999999998766 899999999999
Q ss_pred EecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
+||||+|||+++|+||++|+++||+|+.||+
T Consensus 431 s~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl 461 (463)
T PLN02226 431 TYDHRLIDGREAVYFLRRVKDVVEDPQRLLL 461 (463)
T ss_pred ecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999999999999999999998875
No 14
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=2.8e-75 Score=586.38 Aligned_cols=407 Identities=26% Similarity=0.365 Sum_probs=336.1
Q ss_pred CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 83 ~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
....+.|+|.|+||+|.|++|.+|+|||||+|+++|.||||++||++++|+|+++|+|++|+...+|. +.||++|.+++
T Consensus 61 ~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~e 139 (474)
T KOG0558|consen 61 NSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDLE 139 (474)
T ss_pred ccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeeee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999 99999999997
Q ss_pred cCCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCcccc
Q 006594 163 EDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEV 242 (639)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~ 242 (639)
.++......... . ++. .
T Consensus 140 ve~~~ds~e~s~----------------e---------s~~---v----------------------------------- 156 (474)
T KOG0558|consen 140 VEDSQDSPEDSD----------------E---------SPA---V----------------------------------- 156 (474)
T ss_pred eccCcCCcccCC----------------c---------ccc---c-----------------------------------
Confidence 655321100000 0 000 0
Q ss_pred CCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCCCCCcccCCCCCCCCCCccccc
Q 006594 243 GDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVK 322 (639)
Q Consensus 243 gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (639)
..|.. .. .
T Consensus 157 -----------------------------s~~~~-----------------~~--------------------------~ 164 (474)
T KOG0558|consen 157 -----------------------------SLGES-----------------KQ--------------------------G 164 (474)
T ss_pred -----------------------------cCCCC-----------------ch--------------------------h
Confidence 00000 00 0
Q ss_pred cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccc-cCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006594 323 VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSR-ISSHTEKTSPSPLPQTSTAVSPGSKS 401 (639)
Q Consensus 323 ~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~~ 401 (639)
..+.....++|++|+||.|+|||++.|.|||++|||+|+||++|+.+..+... +.+... +.. +.+.| +..
T Consensus 165 ~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~--a~~--~~~~p-----s~~ 235 (474)
T KOG0558|consen 165 EESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEH--AVI--PGPSP-----STK 235 (474)
T ss_pred hhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCcee--ecC--CCCCC-----ccc
Confidence 00112234899999999999999999999999999999999999975422110 110000 000 00111 110
Q ss_pred CccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh---hhCCCCcCHHHHHHHHHHHHHhhC
Q 006594 402 DLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNV 478 (639)
Q Consensus 402 ~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~---~~~g~kls~~~~likAva~Al~~~ 478 (639)
..+.-.....+|+.+.+|+|.+.|.++ ..||||.+..|||+|.|+++|.+++ ...|+|+||++|++||++.||.++
T Consensus 236 a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~ky 314 (474)
T KOG0558|consen 236 ASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKY 314 (474)
T ss_pred ccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhC
Confidence 111111134579999999999999998 8999999999999999999999987 357899999999999999999999
Q ss_pred cccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCC
Q 006594 479 PEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG 558 (639)
Q Consensus 479 P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG 558 (639)
|.+|+.++..-.+|++..+.|||+|++|+.||++|.|+|++.+|+.||++++++|.+..+.|+|+++|+.|||||+||+|
T Consensus 315 P~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG 394 (474)
T KOG0558|consen 315 PIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIG 394 (474)
T ss_pred ccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecc
Confidence 99999998864559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594 559 MFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL 638 (639)
Q Consensus 559 ~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll 638 (639)
.+|.++..|+|++|+++|.++|++.+.|.... .| ++....+|.|+|++||||+||+..|||-+.+++|||||..||
T Consensus 395 ~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnk--k~--~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~ml 470 (474)
T KOG0558|consen 395 AIGGTFASPVIMPPEVAIGALGRIEKVPRFNK--KG--EVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALML 470 (474)
T ss_pred cccccccCcccccchhhhhhccccccccccCC--CC--CEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHh
Confidence 99999999999999999999999998766532 33 799999999999999999999999999999999999999887
Q ss_pred C
Q 006594 639 L 639 (639)
Q Consensus 639 ~ 639 (639)
|
T Consensus 471 l 471 (474)
T KOG0558|consen 471 L 471 (474)
T ss_pred h
Confidence 5
No 15
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=7.2e-74 Score=616.60 Aligned_cols=370 Identities=29% Similarity=0.457 Sum_probs=305.3
Q ss_pred CceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 211 ~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
...+++||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|.+.
T Consensus 43 ~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~~ 121 (418)
T PTZ00144 43 SIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDTG 121 (418)
T ss_pred cceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcCC
Confidence 457999999999999999999999999999999999999999999999999999999999999999 9999999999654
Q ss_pred CCCcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594 291 PGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370 (639)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~ 370 (639)
++..++.. .++ + ++.+. . ..+.+ .....|.+++++.+.+++...+.. .. .
T Consensus 122 ~~~~~~~~---~~~--~-~~~~~-~-~~~~~------~~~~~p~~~~~a~~~~~a~p~vr~---------------~~-~ 171 (418)
T PTZ00144 122 GAPPAAAP---AAA--A-AAKAE-K-TTPEK------PKAAAPTPEPPAASKPTPPAAAKP---------------PE-P 171 (418)
T ss_pred Cccccccc---ccc--C-CCCCc-c-CCCCC------CCCCCCccccccccccCCchhhhc---------------cc-c
Confidence 43211100 000 0 00000 0 00000 001125566666666665555520 00 0
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHH
Q 006594 371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR 450 (639)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r 450 (639)
.+ ++ + ..+ .+. . ......+.+|+++|||.||++|.+|++++||||++.++|+|+|+++|
T Consensus 172 --~~----~~---~------~~~---~~~--~-~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r 230 (418)
T PTZ00144 172 --AP----AA---K------PPP---TPV--A-RADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELR 230 (418)
T ss_pred --CC----CC---C------CCC---CCc--c-ccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHH
Confidence 00 00 0 000 000 0 00001234799999999999999999999999999999999999999
Q ss_pred HHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHH
Q 006594 451 KELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI 526 (639)
Q Consensus 451 k~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei 526 (639)
+++++ +.|.++||++||+||+++||++||.||++|+++. |++|+++|||+||++++||++|||++++++++.+|
T Consensus 231 ~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eI 308 (418)
T PTZ00144 231 KEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDE--IVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEI 308 (418)
T ss_pred HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCE--EEEecCCCEEEEEECCCCEEEccCCCcccCCHHHH
Confidence 99984 3488999999999999999999999999998764 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEE
Q 006594 527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606 (639)
Q Consensus 527 ~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~l 606 (639)
++++++|++++|+|+|+++|++||||||||+|++|+++|+||||+||+|||++|++.++|++.+| ++++|++|+|
T Consensus 309 a~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g-----~i~~r~~m~l 383 (418)
T PTZ00144 309 EKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN-----EIVIRPIMYL 383 (418)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECC-----EEEEEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998765 7999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 607 TLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 607 slt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
||+||||++||+++|+||++|+++||+|+.||+
T Consensus 384 sLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll 416 (418)
T PTZ00144 384 ALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLL 416 (418)
T ss_pred EEecchhhhChHHHHHHHHHHHHHhcCHHHHhh
Confidence 999999999999999999999999999998874
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.3e-68 Score=540.99 Aligned_cols=379 Identities=30% Similarity=0.425 Sum_probs=301.6
Q ss_pred ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
..++..|.++++++||.|..|++++||+|++++.||+|||||.+++|.||.+|+|.++++++||+ |..|+.|+.|....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999 99999999996543
Q ss_pred CCcCCcCCCCCCCcccCCCCCCCC-CCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594 292 GDVGTVKNSVTSGAEVKGEKETHH-DSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370 (639)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~ 370 (639)
+..+.. .++|..++++.++. .+++.+.+. .......|.++
T Consensus 151 Apa~~~----~~apa~~~pk~~~a~~a~p~~~s~-~~p~~~apv~e---------------------------------- 191 (457)
T KOG0559|consen 151 APAKGG----ASAPAKAEPKTAPAAAAPPKPSSK-PPPKEAAPVAE---------------------------------- 191 (457)
T ss_pred CCcccc----ccCCCccCCCCCCCCCCCCCccCC-CCccccCCCCC----------------------------------
Confidence 222110 11111111111110 000000000 00000000000
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHH
Q 006594 371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR 450 (639)
Q Consensus 371 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r 450 (639)
.++.+.+.++..+.......+++...+.. ....+....+++|++||+.||.+|.+|..+...++.+.|||+++|+++|
T Consensus 192 -~p~~p~~~~P~~~~a~k~~v~~~~~~p~~-~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mR 269 (457)
T KOG0559|consen 192 -SPPAPSSPEPVPASAKKPSVAQPKPPPSE-GATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMR 269 (457)
T ss_pred -CCCCCCCCCCCCccccCccccCCCCCccc-ccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 00000000000000000000000000011 1111234677899999999999999999899999999999999999999
Q ss_pred HHHh----hhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHH
Q 006594 451 KELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI 526 (639)
Q Consensus 451 k~~~----~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei 526 (639)
|+++ +++|+|+.|+.+|+||++.||++.|.+|+.++++. |+|+|++||++||+|++||++|||||++.+++.+|
T Consensus 270 k~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~--iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adI 347 (457)
T KOG0559|consen 270 KQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDD--IVYRDYVDISVAVATPKGLVVPVIRNAESMNFADI 347 (457)
T ss_pred HHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCe--eEEeecceeEEEeecCCceeeeeecccccccHHHH
Confidence 9988 57999999999999999999999999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEE
Q 006594 527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606 (639)
Q Consensus 527 ~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~l 606 (639)
-.++..|..+||+|+|..+||.||||||||-|.||..+.|||||+||++||++.+|.+||++++| ++++|++|.|
T Consensus 348 E~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G-----~Vv~RPMMYv 422 (457)
T KOG0559|consen 348 EKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGG-----QVVPRPMMYV 422 (457)
T ss_pred HHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCC-----EeeeccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 607 TLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 607 slt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
.||||||+|||.++.-||+.+++++|||..|||
T Consensus 423 ALTYDHRliDGREAVtFLr~iK~~VEDP~~mll 455 (457)
T KOG0559|consen 423 ALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLL 455 (457)
T ss_pred EeeccccccccHHHHHHHHHHHHHhhCHHHHhh
Confidence 999999999999999999999999999999886
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-67 Score=556.78 Aligned_cols=296 Identities=33% Similarity=0.483 Sum_probs=256.7
Q ss_pred CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 006594 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSD 407 (639)
Q Consensus 328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 407 (639)
..++||+||+||+|+|||++.|+||||+|||+++||++|+....... ..++.. + . ...+ +.+. +. +...
T Consensus 48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~~~~-~-~---~~~~--~~~~-~~-~~~~ 116 (347)
T PRK14843 48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEND--SIKSPA-Q-I---EKVE--EVPD-NV-TPYG 116 (347)
T ss_pred cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCc--cccCCC-C-C---cccc--CCCc-cc-ccCC
Confidence 34699999999999999999999999999999999999974321000 000000 0 0 0000 0000 00 0111
Q ss_pred CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccce
Q 006594 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANA 483 (639)
Q Consensus 408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~ 483 (639)
..+.+|+++|||.||++|.+|++++||||++.+||+|+|+++|++++. +.|.++||++||+||++.||++||.||+
T Consensus 117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na 196 (347)
T PRK14843 117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA 196 (347)
T ss_pred cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence 245679999999999999999999999999999999999999999873 3478999999999999999999999999
Q ss_pred eeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCcc
Q 006594 484 YWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVD 563 (639)
Q Consensus 484 ~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~ 563 (639)
+|+++..+|++|++|||||||++++||++|||++++++++.+|++++++|.+++|+|+|+++||+||||||||+|+||++
T Consensus 197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~ 276 (347)
T PRK14843 197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ 276 (347)
T ss_pred EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence 99865345999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 564 QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 564 ~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
+|+|||||||+|||++|++.++|++++| ++++|++|+|||+||||++||+++++||+.|+++||+|..||+
T Consensus 277 ~~tpIInpPq~aIlgvG~i~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 277 SFGPIINQPNSAILGVSSTIEKPVVVNG-----EIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred ceeccccCCceEEEecCCcceeeEEECC-----eEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 9999999999999999999999988765 7999999999999999999999999999999999999998874
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=7.9e-67 Score=544.95 Aligned_cols=300 Identities=31% Similarity=0.384 Sum_probs=256.0
Q ss_pred ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 006594 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS 408 (639)
Q Consensus 329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 408 (639)
.++||+||+||+|+|||++.|+|||++|||+++||++|+....... .+++.. +.+.. ...++...+... .....
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~ 75 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAP--TPAEAA-SVSSA-QQAAKTAAPAAA--PPKLE 75 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhcccccc--CCcccc-ccccc-cccccccCCccc--ccCCC
Confidence 4589999999999999999999999999999999999975321100 000000 00000 000000000000 01111
Q ss_pred cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (639)
Q Consensus 409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~ 484 (639)
.+.+|+++||+.|+++|.+|++++||||++.+||+|+|+++|+++++ ++|.++||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 34579999999999999999999999999999999999999999974 25889999999999999999999999999
Q ss_pred eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (639)
Q Consensus 485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~ 564 (639)
|+++.++|+++++||||+||++++||++|||++++++|+.+|++++++|.+++|+|+|.++|++||||||||+|++|..+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 98654569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|+||||+||+|||++|++.++|++.+| ++++|++|+|||+||||++||+++++||++|+++||+|+.|++
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv~~g-----~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIVKNG-----QIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred eecccCCCccceeecccceEEeEEECC-----EEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 999999999999999999999988665 7999999999999999999999999999999999999997753
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=2.1e-56 Score=451.13 Aligned_cols=226 Identities=47% Similarity=0.726 Sum_probs=201.3
Q ss_pred CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhh---CCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK---HNTKVSVNDIVIKAVAVALKNVPEANAY 484 (639)
Q Consensus 408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~---~g~kls~~~~likAva~Al~~~P~ln~~ 484 (639)
+++++|++++||+||++|.+|++++||+|++.+||+|+|+++|++++++ .+.++|+++|++||+++||++||+||++
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~ 82 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS 82 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence 4678899999999999999999999999999999999999999999853 3569999999999999999999999999
Q ss_pred eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (639)
Q Consensus 485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~ 564 (639)
|+++. +|++|+++|||+||++++||++|||++++++|+.||+++++++.+++|+|+|.++|++||||||||+|++|+++
T Consensus 83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 98874 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|+|||||||+|||++|++.++|++.+| +++++++|++||+||||++||+++++||++|+++||+|++|||
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~~~~-----~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVVEDG-----EVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEEETT-----CEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eEccCCcccceEEEecceEEEEEEEec-----cceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 999999999999999999999998665 7999999999999999999999999999999999999999987
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=5.5e-45 Score=409.03 Aligned_cols=222 Identities=23% Similarity=0.302 Sum_probs=204.5
Q ss_pred ccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh----hhCCCCcCHHHHHHHHHHHHHhhCcccceee
Q 006594 410 EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYW 485 (639)
Q Consensus 410 ~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~----~~~g~kls~~~~likAva~Al~~~P~ln~~~ 485 (639)
+..|+++++++|+++|..| ..+|+++...+|+++.|+++|+.+| +..|.|+||+++|+||+++||++||.+|++|
T Consensus 116 ~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 116 EVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred ceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 4569999999999999999 5699999999999999999999987 3568899999999999999999999999999
Q ss_pred cc--CCCeEEEcCCccEEEEEecC-----CCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCC
Q 006594 486 DV--EKGEIVLCDAIDISIAVATE-----KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG 558 (639)
Q Consensus 486 ~~--~~~~i~~~~~v~i~iAV~~~-----~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG 558 (639)
+. +++.|+++++||||+||+++ +||+||+|+++++++|.+|..++++++.+||+|+|+++||+||||||||+|
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G 274 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG 274 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence 84 33459999999999999998 589999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeeccCCCcceEEEecCceEEEEEeeCCC-CCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594 559 MFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD-GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFS 632 (639)
Q Consensus 559 ~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~-G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le 632 (639)
+||..+|+||||+||+|||++|++...+++.+..+ -..++.++++|+||+|||||+|||+++++||+.|+++|+
T Consensus 275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 99999999999999999999999997766543210 012799999999999999999999999999999999998
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.95 E-value=5e-27 Score=233.99 Aligned_cols=193 Identities=15% Similarity=0.106 Sum_probs=164.8
Q ss_pred HHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCC
Q 006594 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA 497 (639)
Q Consensus 418 r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~ 497 (639)
||.--.-... ...|+|+++++||||+|+++.|+. +++|++.+++|+++|+|++|+||.++.+++ ++.||.
T Consensus 18 RkehF~~f~~--~~~~~fsiT~~iDiT~l~~~~K~~------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~--v~~~D~ 87 (219)
T PRK13757 18 RKEHFEAFQS--VAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDGE--LVIWDS 87 (219)
T ss_pred cHHHHHHHhc--CCCCceEEEEEEEHHHHHHHHHHc------CCChHHHHHHHHHHHHhcCHhHheEEECCe--EEEEeE
Confidence 4444444432 234559999999999999999998 899999999999999999999999997654 999999
Q ss_pred ccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCCCCCCCCeEEEEeCCCCCccceee-ccCCC--c
Q 006594 498 IDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAPHEFQGGTFSISNLGMFPVDQFCA-IINPP--Q 573 (639)
Q Consensus 498 v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~~d~~ggtftISnlG~~g~~~~~p-ii~~p--~ 573 (639)
++++++|.++++.++..++..+..++.+|.+.....++++++. .+.++......|.||+++|+.+++|+. +.+.. .
T Consensus 88 i~ps~Ti~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~ 167 (219)
T PRK13757 88 VHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFF 167 (219)
T ss_pred EeeeEEEEeCCCceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCc
Confidence 9999999988876778999999999999999988888888876 455555566799999999999999874 33333 3
Q ss_pred ceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 574 AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 574 ~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
+|++++||+.++ +| |.+||||+++||.++||+|+++|++.||++|++
T Consensus 168 ~P~it~GKy~~~----~g---------r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 168 APVFTMGKYYTQ----GD---------KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred CcEEEeeceEEE----CC---------EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 789999999865 44 899999999999999999999999999999987
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.95 E-value=6.7e-27 Score=231.76 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=144.4
Q ss_pred cCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC
Q 006594 429 KQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508 (639)
Q Consensus 429 ~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~ 508 (639)
....|+|+++.+||||+|++++|+. +++|++++++++++|+|++|+||.+++++ |++++||.++++++|.+++
T Consensus 22 ~~~~p~~svT~~lDvT~l~~~~K~~------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~-g~v~~~d~i~ps~Tv~~~~ 94 (206)
T PF00302_consen 22 NFDNPYFSVTVNLDVTNLYKYAKEK------GLSFFPAYLYAIMKAANEIPEFRYRIVDD-GEVVYYDRIDPSYTVFHKD 94 (206)
T ss_dssp TTSBEEEEEEEEEE-HHHHHHHHHT------T--HHHHHHHHHHHHHTTSGGGCEEEETT-SCEEEESS-EEEEEEEETT
T ss_pred cCCCceEecceeEEhHHHHHHHHHc------CCCcHHHHHHHHHHHHhcCHHHheeeeCC-CcEEEECCcceeeeEEeCC
Confidence 3578999999999999999999998 89999999999999999999999999887 5699999999999999776
Q ss_pred CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCCCC-CCCCeEEEEeCCCCCccceeec-cCCC--cceEEEecCce
Q 006594 509 GLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAPHE-FQGGTFSISNLGMFPVDQFCAI-INPP--QAGILAVGRGN 583 (639)
Q Consensus 509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~~d-~~ggtftISnlG~~g~~~~~pi-i~~p--~~ail~vG~~~ 583 (639)
+..+..++..+..++.+|.+...+.++++++. .+.++. .....|.+|+++|+.+++++.- -+.+ ..|++++||+.
T Consensus 95 ~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~ 174 (206)
T PF00302_consen 95 DETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYF 174 (206)
T ss_dssp TTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--E
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeE
Confidence 55777888999999999999999999888764 455443 3457999999999999998754 3333 28999999998
Q ss_pred EEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHH
Q 006594 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALC 628 (639)
Q Consensus 584 ~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~ 628 (639)
++ +| |..||||+++||+++||+|+++|++.||
T Consensus 175 ~~----~g---------r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 175 EE----NG---------RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp EE----TT---------EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eE----CC---------EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 76 44 8999999999999999999999999987
No 23
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.94 E-value=2.5e-26 Score=263.26 Aligned_cols=181 Identities=22% Similarity=0.300 Sum_probs=149.4
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+.|+||+|| |+||+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||. |++|++|+.|+.++
T Consensus 2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~-V~~G~~l~~i~~~~ 78 (633)
T PRK11854 2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMIFESAD 78 (633)
T ss_pred CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCE-EeCCCEEEEEeccc
Confidence 3579999999 99999999999999999999999999999999999999999999999999999 99999999996542
Q ss_pred cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCe
Q 006594 166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245 (639)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~ 245 (639)
.... ..+ + ... ....+ .+. +.+ ......++.||++| +.+|+|.+|+|++||.|++||+
T Consensus 79 ~~~~----~~~----~---~~~-~~~~~---~~~-~~~----~~~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~ 136 (633)
T PRK11854 79 GAAD----AAP----A---QAE-EKKEA---APA-AAP----AAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQS 136 (633)
T ss_pred cccc----ccc----c---ccc-ccccc---ccc-ccc----ccCCceEEecccCC--CCCceEeEEEeCCCCEECCCCE
Confidence 1100 000 0 000 00000 000 000 11234689999999 9999999999999999999999
Q ss_pred eeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 246 l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
||++|+||+.++|.||++|+|.++++++|+. |..|++|+.|...++
T Consensus 137 l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~~~ 182 (633)
T PRK11854 137 LITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEVAGE 182 (633)
T ss_pred eeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEecccc
Confidence 9999999999999999999999999999999 999999999976443
No 24
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.88 E-value=1.4e-21 Score=186.45 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=163.9
Q ss_pred CCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCC
Q 006594 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKG 509 (639)
Q Consensus 430 ~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~g 509 (639)
..+||+.++.++|+|.++.+.|++ +++|++++++|+.+++++|+|||.++.++. +++||.+++.++|.++++
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~~------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~--~~~~d~v~p~~tv~~~~~ 97 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKEN------GLSFFPALLYAVTRCANRHQEFRLRIQNGQ--LGYWDNVPPMYTVFHGET 97 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHHc------CCcchHHHHHHHHHHhcccHHhHhhhcCCe--eEEeecCCcceEEEcCCC
Confidence 588999999999999999999998 899999999999999999999999998865 999999999999999988
Q ss_pred eEEeeeecCCcCCHHHHHHHHHHHHHHHHcCC-CCCCCCC-CCeEEEEeCCCCCccceeeccCCCc---ceEEEecCceE
Q 006594 510 LMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQ-GGTFSISNLGMFPVDQFCAIINPPQ---AGILAVGRGNQ 584 (639)
Q Consensus 510 l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~-l~~~d~~-ggtftISnlG~~g~~~~~pii~~p~---~ail~vG~~~~ 584 (639)
.++.+++.....++.+|++....-+++.+++. +.+++-. .....+||++|+.+++++.-++... .+|+.+|+..+
T Consensus 98 e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~~ 177 (219)
T COG4845 98 ETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFYE 177 (219)
T ss_pred cEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecceec
Confidence 88899999999999999999888888887764 3333332 2356789999999998886655332 78999999985
Q ss_pred EEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594 585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL 638 (639)
Q Consensus 585 ~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll 638 (639)
+ || +-.||+++++||..+||.|+++|++.|++++++|-.+.
T Consensus 178 ~-------~G------kl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~~ 218 (219)
T COG4845 178 E-------DG------KLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCIP 218 (219)
T ss_pred c-------CC------eEEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCCC
Confidence 4 44 67899999999999999999999999999999987653
No 25
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=99.85 E-value=1.5e-21 Score=206.96 Aligned_cols=95 Identities=60% Similarity=0.989 Sum_probs=90.9
Q ss_pred CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 83 ~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
++.|+.|.||.|+++|+||.|++|.+||||.+++||+||||||||++|++++.++|++.||++++|.+||++|++||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred cCCcccccccccccC
Q 006594 163 EDADDIQHIPATIAG 177 (639)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (639)
+.+++..+++.+..+
T Consensus 115 e~e~di~~~k~~k~~ 129 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDE 129 (470)
T ss_pred cccccHHHhhccccc
Confidence 999998888777553
No 26
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.80 E-value=1.2e-19 Score=197.46 Aligned_cols=82 Identities=50% Similarity=0.763 Sum_probs=78.7
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
+.++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++||+ |++|++|++|+++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~ 79 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEE 79 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecC
Confidence 357899999999999999999999999999999999999999999999999999999999999999 9999999999887
Q ss_pred Ccc
Q 006594 165 ADD 167 (639)
Q Consensus 165 ~~~ 167 (639)
+++
T Consensus 80 ~~~ 82 (404)
T COG0508 80 GAD 82 (404)
T ss_pred CCc
Confidence 664
No 27
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.76 E-value=3.7e-18 Score=186.17 Aligned_cols=88 Identities=31% Similarity=0.545 Sum_probs=80.1
Q ss_pred ccccccCCCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccC
Q 006594 75 VRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPV 154 (639)
Q Consensus 75 ~r~~~~~~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~ 154 (639)
.|.|....-.+ ++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |++
T Consensus 81 ~~~~~~~~~~m-~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~v 158 (463)
T PLN02226 81 VRPFSSESGDT-VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEP 158 (463)
T ss_pred ccccccccCCc-eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecC
Confidence 45554433334 8999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCcEEEEecC
Q 006594 155 GQPIAITVED 164 (639)
Q Consensus 155 G~~l~~i~~~ 164 (639)
|++|+.|++.
T Consensus 159 G~~L~~I~~~ 168 (463)
T PLN02226 159 GTKVAIISKS 168 (463)
T ss_pred CCEEEEeccC
Confidence 9999999644
No 28
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=99.74 E-value=1.6e-18 Score=177.25 Aligned_cols=81 Identities=36% Similarity=0.617 Sum_probs=77.4
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
...+++++|.|+|+|+||+|.+|++++||+|++|+.||+|||||.+++|.||.+|+|.+++|++||+ |..||.|+.|..
T Consensus 70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~ 148 (457)
T KOG0559|consen 70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISP 148 (457)
T ss_pred cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999 999999999987
Q ss_pred CC
Q 006594 164 DA 165 (639)
Q Consensus 164 ~~ 165 (639)
..
T Consensus 149 ga 150 (457)
T KOG0559|consen 149 GA 150 (457)
T ss_pred CC
Confidence 53
No 29
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.71 E-value=3.4e-17 Score=182.23 Aligned_cols=93 Identities=60% Similarity=1.026 Sum_probs=86.6
Q ss_pred ccccccccC-CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-c
Q 006594 73 IGVRHFSSS-ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-K 150 (639)
Q Consensus 73 ~~~r~~~~~-~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~ 150 (639)
...|.|++. .++.+++|.||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.+|++++|+ .
T Consensus 98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~ 177 (539)
T PLN02744 98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE 177 (539)
T ss_pred cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence 457999886 78889999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred cccCCCcEEEEecCCc
Q 006594 151 DVPVGQPIAITVEDAD 166 (639)
Q Consensus 151 ~v~~G~~l~~i~~~~~ 166 (639)
|++|++|++|.++++
T Consensus 178 -v~vG~~ia~i~~~~~ 192 (539)
T PLN02744 178 -IKVGEVIAITVEEEE 192 (539)
T ss_pred -cCCCCEEEEEccCcc
Confidence 999999999865443
No 30
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.71 E-value=3.8e-17 Score=177.20 Aligned_cols=81 Identities=32% Similarity=0.648 Sum_probs=77.3
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
..+++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.
T Consensus 42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~ 120 (418)
T PTZ00144 42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDT 120 (418)
T ss_pred ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcC
Confidence 4458999999999999999999999999999999999999999999999999999999999999999 999999999975
Q ss_pred CC
Q 006594 164 DA 165 (639)
Q Consensus 164 ~~ 165 (639)
.+
T Consensus 121 ~~ 122 (418)
T PTZ00144 121 GG 122 (418)
T ss_pred CC
Confidence 44
No 31
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.71 E-value=1.5e-17 Score=138.73 Aligned_cols=74 Identities=46% Similarity=0.690 Sum_probs=72.0
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
++|++|.+|..+.+++|.+|+|++||.|++||+||+||+||+.++|+||++|+|+++++++|+. |..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 9999999986
No 32
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.66 E-value=3.4e-16 Score=170.60 Aligned_cols=80 Identities=36% Similarity=0.601 Sum_probs=76.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|++.+
T Consensus 2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~ 80 (407)
T PRK05704 2 MVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEGA 80 (407)
T ss_pred CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999 99999999997654
Q ss_pred c
Q 006594 166 D 166 (639)
Q Consensus 166 ~ 166 (639)
+
T Consensus 81 ~ 81 (407)
T PRK05704 81 A 81 (407)
T ss_pred c
Confidence 3
No 33
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.66 E-value=1.2e-16 Score=133.28 Aligned_cols=74 Identities=42% Similarity=0.672 Sum_probs=71.9
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
+++++|.+|..+.++++.+|++++||.|++||+||+|||||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999999 9999999986
No 34
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.64 E-value=8.5e-16 Score=167.15 Aligned_cols=78 Identities=37% Similarity=0.632 Sum_probs=74.8
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+. |++|++|++|+.++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~ 78 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGN 78 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999997543
No 35
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.63 E-value=1e-15 Score=164.60 Aligned_cols=78 Identities=37% Similarity=0.632 Sum_probs=75.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.++|+||++|++|+||+|++|+|++||.|++||+||+||+||++++|+||.+|+|+++++++|+. |.+|++|+.|++.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~ 79 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADA 79 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999 9999999999754
No 36
>PRK06748 hypothetical protein; Validated
Probab=99.62 E-value=1.9e-15 Score=127.46 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=60.9
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEc-ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIET-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~iet-dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
.|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.++++++||. |++|++|+.|++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence 48999999999999999999999999 9999999999999999999999999 999999999953
No 37
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.61 E-value=1.3e-15 Score=163.78 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=101.9
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
.++.||++|++|++|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|.....
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~~~ 81 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADAEV 81 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999 999999999954221
Q ss_pred CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccch
Q 006594 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363 (639)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV 363 (639)
.. ......++|.++++.++ ++++....+++..+.+...++
T Consensus 82 ~~------------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i 121 (371)
T PRK14875 82 SD------------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV 121 (371)
T ss_pred Cc------------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence 00 00112468888888888 899999988888777765555
No 38
>PRK06748 hypothetical protein; Validated
Probab=99.58 E-value=3.5e-15 Score=125.84 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=60.7
Q ss_pred ccccceeecCCCCccccCCeeeEeec-CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIET-DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vet-dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.|+|.+|+|++||+|++||+|++||| ||++++|+||.+|+|.+|++++|+. |++|++|+.|.+
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence 48999999999999999999999999 9999999999999999999999999 999999999953
No 39
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.57 E-value=6.3e-15 Score=167.81 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=77.5
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
.+.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|+.|++
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~ 211 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGD 211 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEec
Confidence 3458999999999999999999999999999999999999999999999999999999999999999 999999999976
Q ss_pred CCc
Q 006594 164 DAD 166 (639)
Q Consensus 164 ~~~ 166 (639)
.++
T Consensus 212 ~~~ 214 (590)
T TIGR02927 212 AGA 214 (590)
T ss_pred CCC
Confidence 543
No 40
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.57 E-value=1.6e-14 Score=159.67 Aligned_cols=83 Identities=55% Similarity=0.905 Sum_probs=77.3
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEEEecCC
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAITVEDA 165 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~i~~~~ 165 (639)
++|+||++|++|+||+|.+|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++|+ . |++|++|+.|++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~-V~vG~~i~~i~~~~ 81 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEG-VKVNTPIAVLLEEG 81 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcE-eCCCCEEEEEccCC
Confidence 589999999999999999999999999999999999999999999999999999999999996 6 99999999997765
Q ss_pred ccccc
Q 006594 166 DDIQH 170 (639)
Q Consensus 166 ~~~~~ 170 (639)
++..+
T Consensus 82 ~~~~~ 86 (464)
T PRK11892 82 ESASD 86 (464)
T ss_pred Ccccc
Confidence 54443
No 41
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.52 E-value=4.2e-14 Score=159.92 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=75.6
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+.|+||++|+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~ 193 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAG 193 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999 99999999997654
Q ss_pred c
Q 006594 166 D 166 (639)
Q Consensus 166 ~ 166 (639)
+
T Consensus 194 ~ 194 (546)
T TIGR01348 194 S 194 (546)
T ss_pred C
Confidence 3
No 42
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.50 E-value=9e-14 Score=114.97 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=60.2
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|.+|+|++||.|++||+||+||+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEEC
Confidence 499999999999999999999999999999999999999999999999999 99999999884
No 43
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.48 E-value=1.4e-13 Score=150.81 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.4
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 89 v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
|+||++|++|+||+|++|+|++||.|++||+||++|+||+.++++|+.+|+|.++++++|+. |.+|++|+.|+.+++
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~ 77 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDS 77 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999 999999999975443
No 44
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.48 E-value=1.1e-13 Score=152.96 Aligned_cols=84 Identities=55% Similarity=0.898 Sum_probs=77.4
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
.+++||++|++|++|+|.+|+|++||.|+.||+|++|||||++++++|+.+|+|.++++++|+.+|++|++|++|.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999634999999999987665
Q ss_pred CcCC
Q 006594 293 DVGT 296 (639)
Q Consensus 293 ~~~~ 296 (639)
+..+
T Consensus 83 ~~~~ 86 (464)
T PRK11892 83 SASD 86 (464)
T ss_pred cccc
Confidence 5443
No 45
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.46 E-value=3.3e-13 Score=148.32 Aligned_cols=80 Identities=45% Similarity=0.666 Sum_probs=76.4
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
...++||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.+
T Consensus 2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~ 80 (411)
T PRK11856 2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEG 80 (411)
T ss_pred CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999 99999999997655
Q ss_pred c
Q 006594 166 D 166 (639)
Q Consensus 166 ~ 166 (639)
+
T Consensus 81 ~ 81 (411)
T PRK11856 81 E 81 (411)
T ss_pred C
Confidence 4
No 46
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.45 E-value=3.4e-13 Score=148.51 Aligned_cols=77 Identities=70% Similarity=1.152 Sum_probs=73.5
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 89 v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
|.||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+.+|++|++|++|++.+
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 67999999999999999999999999999999999999999999999999999999999986699999999997644
No 47
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.45 E-value=3.4e-13 Score=153.11 Aligned_cols=79 Identities=32% Similarity=0.464 Sum_probs=75.7
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
...+|+||++|+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.
T Consensus 118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~ 195 (547)
T PRK11855 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVA 195 (547)
T ss_pred CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecC
Confidence 358999999999 99999999999999999999999999999999999999999999999999999 9999999999765
Q ss_pred C
Q 006594 165 A 165 (639)
Q Consensus 165 ~ 165 (639)
+
T Consensus 196 ~ 196 (547)
T PRK11855 196 A 196 (547)
T ss_pred C
Confidence 3
No 48
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.42 E-value=6.2e-13 Score=110.33 Aligned_cols=72 Identities=40% Similarity=0.679 Sum_probs=69.4
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 89 v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
+.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+. +..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence 57899999999999999999999999999999999999999999999999999999999999 9999999874
No 49
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.39 E-value=1.3e-12 Score=107.78 Aligned_cols=62 Identities=31% Similarity=0.330 Sum_probs=60.2
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
-|+|.+|++++||+|++||+|++||+||+.+++.|+.+|+|.++++++|+. |..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence 499999999999999999999999999999999999999999999999999 99999999984
No 50
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.38 E-value=9.7e-13 Score=123.12 Aligned_cols=62 Identities=32% Similarity=0.474 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
-|++.+.+|++||+|++||+||.||+||+..+|.||.+|+|++|++++||. |..||+|+.|+
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence 499999999999999999999999999999999999999999999999999 99999999985
No 51
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.34 E-value=2.1e-12 Score=106.77 Aligned_cols=61 Identities=25% Similarity=0.358 Sum_probs=59.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEE
Confidence 489999999999999999999999999999999999999999999999999 9999999987
No 52
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.31 E-value=9.8e-12 Score=114.13 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=59.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI 129 (130)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence 479999999999999999999999999999999999999999999999999 9999999987
No 53
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.29 E-value=7e-12 Score=103.97 Aligned_cols=72 Identities=38% Similarity=0.652 Sum_probs=68.9
Q ss_pred eecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 215 ~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
+.+|+++..+.+|.+.+|++++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+. +..|++|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence 56899999999999999999999999999999999999999999999999999999999998 9999999874
No 54
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.29 E-value=8.3e-12 Score=116.86 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=63.2
Q ss_pred ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
...+.-|.. |++.+.+|++||.|++||+||+||.+|+.++|+||.+|+|.+|++++|+. |..|++|+.|.
T Consensus 70 ~~~V~SPm~------Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~ 139 (140)
T COG0511 70 GTQVTSPMV------GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE 139 (140)
T ss_pred CceEecCcc------eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence 344555543 67888999999999999999999999999999999999999999999999 99999999984
No 55
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.27 E-value=1.3e-11 Score=113.32 Aligned_cols=61 Identities=25% Similarity=0.252 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.|+|.+|++++||.|++||+|++||+||+..+|.||.+|+|.++++++||. |..|++|+.|
T Consensus 69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 129 (130)
T PRK06549 69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI 129 (130)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence 589999999999999999999999999999999999999999999999999 9999999987
No 56
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.24 E-value=6.1e-11 Score=119.14 Aligned_cols=57 Identities=33% Similarity=0.487 Sum_probs=55.4
Q ss_pred eeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|++||.|++||+|++||+||+.++|+++.+|+|.+|++++|+. |.+|++|+.|.
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE 273 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE 273 (274)
T ss_pred cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence 5999999999999999999999999999999999999999999999 99999999983
No 57
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.22 E-value=3.2e-11 Score=114.08 Aligned_cols=61 Identities=33% Similarity=0.514 Sum_probs=59.6
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.++++++||. |..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence 589999999999999999999999999999999999999999999999999 9999999987
No 58
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.21 E-value=1.2e-10 Score=110.26 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=59.1
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|.+|++++||.|++||+|+++|+||+.++|.|+.+|+|.++++++|+. |..|++|+.|
T Consensus 92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I 152 (153)
T PRK05641 92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL 152 (153)
T ss_pred CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence 368999999999999999999999999999999999999999999999999 9999999987
No 59
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.21 E-value=2.7e-11 Score=99.84 Aligned_cols=62 Identities=27% Similarity=0.316 Sum_probs=59.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|.|.+|++++||+|++||+|+++|++|+.+++.++.+|+|.++++++|+. |..|++|+.|.
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence 489999999999999999999999999999999999999999999999999 99999999873
No 60
>PRK07051 hypothetical protein; Validated
Probab=99.19 E-value=6.4e-11 Score=100.30 Aligned_cols=61 Identities=30% Similarity=0.379 Sum_probs=58.6
Q ss_pred EEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 101 g~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus 12 g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~ 79 (80)
T PRK07051 12 GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE 79 (80)
T ss_pred eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 66777 999999999999999999999999999999999999999999999 99999999985
No 61
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.17 E-value=1.6e-11 Score=88.79 Aligned_cols=38 Identities=45% Similarity=0.630 Sum_probs=33.6
Q ss_pred CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHH
Q 006594 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365 (639)
Q Consensus 328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~ 365 (639)
.+.+||+||++|+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 35689999999999999999999999999999999985
No 62
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.16 E-value=1.4e-10 Score=93.74 Aligned_cols=62 Identities=35% Similarity=0.498 Sum_probs=59.5
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.+|+|.+|++++||.|++||+|++||++|+..+|+||.+|+|.++++.+|+. |..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 4699999999999999999999999999999999999999999999999999 9999999875
No 63
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=99.15 E-value=4e-11 Score=122.87 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=75.8
Q ss_pred CCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 210 ~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.....+.+-++|+++.|+++.+|+|||||+|+..|.||||++||++++|++.++|+|++|+...++. ..||++|..+.-
T Consensus 62 ~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~ev 140 (474)
T KOG0558|consen 62 SGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDLEV 140 (474)
T ss_pred cceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeeeee
Confidence 3468899999999999999999999999999999999999999999999999999999999999999 999999998864
Q ss_pred C
Q 006594 290 D 290 (639)
Q Consensus 290 ~ 290 (639)
+
T Consensus 141 e 141 (474)
T KOG0558|consen 141 E 141 (474)
T ss_pred c
Confidence 3
No 64
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.15 E-value=7.3e-11 Score=118.60 Aligned_cols=62 Identities=31% Similarity=0.489 Sum_probs=59.2
Q ss_pred eEEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|++.+ |+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++||. |.+|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence 477777 999999999999999999999999999999999999999999999 99999999984
No 65
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.15 E-value=8.2e-11 Score=112.09 Aligned_cols=61 Identities=33% Similarity=0.496 Sum_probs=58.3
Q ss_pred EEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 101 g~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|+
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i~ 156 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVIE 156 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEEC
Confidence 77765 999999999999999999999999999999999999999999999 99999999873
No 66
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.09 E-value=2.2e-10 Score=109.08 Aligned_cols=61 Identities=33% Similarity=0.506 Sum_probs=57.9
Q ss_pred EEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 101 g~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
|++.. |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEeC
Confidence 66665 999999999999999999999999999999999999999999999 99999999873
No 67
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.07 E-value=4.9e-10 Score=106.79 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=64.2
Q ss_pred eeeecCCCCCcccc-cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 213 ~~~~~P~l~~~~~~-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
..+.-|..|-.... ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.+|+++.|+. |..|++|+.|
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i 155 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI 155 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence 45667766644321 33456999999999999999999999999999999999999999999999 9999999987
No 68
>PRK07051 hypothetical protein; Validated
Probab=99.06 E-value=4.5e-10 Score=95.08 Aligned_cols=75 Identities=25% Similarity=0.245 Sum_probs=64.4
Q ss_pred eeeecCCCCCccc-ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 213 VVLEMPALSPTMN-QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 213 ~~~~~P~l~~~~~-~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
+++..|..|.... ......|++++||.|++||+|+++|++|+.++|.||.+|+|.++++++|+. |..|++|+.+.
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 4566666664433 233446999999999999999999999999999999999999999999999 99999999984
No 69
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.03 E-value=2e-09 Score=87.13 Aligned_cols=73 Identities=56% Similarity=0.878 Sum_probs=70.1
Q ss_pred EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 88 ~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.+.+|+++.+..+|+|.+|+++.|+.|..|++++.++++|+...+.++.+|++.+.++..|+. +..|++|+.|
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence 478999999999999999999999999999999999999999999999999999999999999 9999999874
No 70
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.02 E-value=6.2e-10 Score=126.25 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=61.1
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+. |.+|++|+.|++
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999 999999999964
No 71
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.97 E-value=1.8e-09 Score=102.82 Aligned_cols=74 Identities=27% Similarity=0.390 Sum_probs=65.4
Q ss_pred eeeecCCCCCcccc-cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 213 ~~~~~P~l~~~~~~-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
..+.-|..|-.... ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i 154 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI 154 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence 46777877755432 34456999999999999999999999999999999999999999999999 9999999987
No 72
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.95 E-value=1.6e-09 Score=87.51 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=58.5
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|.+.+|++++||.|++||+|++++++|...+|.||.+|+|.+++++.|+. |..|++|+.|
T Consensus 7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i 67 (67)
T cd06850 7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI 67 (67)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence 588999999999999999999999999999999999999999999999999 9999999875
No 73
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.92 E-value=1.9e-09 Score=131.91 Aligned_cols=62 Identities=29% Similarity=0.374 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|++|+|++||.|++||+||+||+||++++|+||.+|+|+++++++||. |.+||+|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999 99999999884
No 74
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.90 E-value=1.1e-08 Score=116.23 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=60.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+. |.+|++|+.|.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~ 594 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVE 594 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEe
Confidence 489999999999999999999999999999999999999999999999999 99999999985
No 75
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.83 E-value=5.2e-09 Score=119.08 Aligned_cols=58 Identities=33% Similarity=0.512 Sum_probs=56.5
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l 158 (639)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++||. |.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence 599999999999999999999999999999999999999999999999999 9999975
No 76
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.83 E-value=7.6e-09 Score=117.91 Aligned_cols=61 Identities=33% Similarity=0.450 Sum_probs=59.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.|+|++|+|++||.|++||+||+||+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 589999999999999999999999999999999999999999999999999 9999999987
No 77
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.80 E-value=1.8e-08 Score=81.40 Aligned_cols=73 Identities=51% Similarity=0.807 Sum_probs=69.5
Q ss_pred eeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 214 ~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.+.+|+++....+|.|..|+++.|+.|..|++++.+++.|...++.++.+|++.+.++.+|+. +..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence 477899999999999999999999999999999999999999999999999999999999999 9999999864
No 78
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.79 E-value=2.4e-08 Score=121.36 Aligned_cols=61 Identities=16% Similarity=0.356 Sum_probs=59.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i 1142 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVL 1142 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 389999999999999999999999999999999999999999999999999 9999999987
No 79
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.78 E-value=1e-08 Score=124.46 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=60.2
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|+++++++|+. |.+|++|+.|+
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVLE 1143 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEeC
Confidence 499999999999999999999999999999999999999999999999999 99999999883
No 80
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.70 E-value=1.8e-08 Score=123.53 Aligned_cols=62 Identities=27% Similarity=0.390 Sum_probs=59.9
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+. |.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence 489999999999999999999999999999999999999999999999999 99999999873
No 81
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.69 E-value=3.6e-08 Score=112.64 Aligned_cols=62 Identities=32% Similarity=0.486 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|+++++++|+. |..|++|+.|+
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence 589999999999999999999999999999999999999999999999999 99999999984
No 82
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.64 E-value=2.6e-08 Score=113.53 Aligned_cols=58 Identities=31% Similarity=0.492 Sum_probs=56.1
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI 284 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l 284 (639)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence 489999999999999999999999999999999999999999999999999 9999975
No 83
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.60 E-value=5.4e-08 Score=111.01 Aligned_cols=61 Identities=33% Similarity=0.436 Sum_probs=59.2
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I 592 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL 592 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence 378999999999999999999999999999999999999999999999999 9999999987
No 84
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.57 E-value=1.1e-07 Score=115.93 Aligned_cols=62 Identities=27% Similarity=0.423 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|++|+|++||.|++||+|+.+|+|||..+|.||.+|+|+++++++|+. |..|+.|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence 499999999999999999999999999999999999999999999999999 99999999985
No 85
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.54 E-value=1.3e-07 Score=103.61 Aligned_cols=62 Identities=29% Similarity=0.471 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|+.+.|++|++|.+||+|+.+|.|||+..|+++.+|+|+++.+.+||. |..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence 599999999999999999999999999999999999999999999999999 99999999985
No 86
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.42 E-value=3.1e-07 Score=105.11 Aligned_cols=62 Identities=29% Similarity=0.468 Sum_probs=59.8
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence 478999999999999999999999999999999999999999999999999 99999999984
No 87
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.41 E-value=3.7e-07 Score=102.93 Aligned_cols=67 Identities=25% Similarity=0.481 Sum_probs=61.8
Q ss_pred CCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 94 ~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
+|-.|. |.|+++.|++||.|++||+|+.+|.|||+..|.+|++|+|++++|.+||. |..|+.|..++
T Consensus 1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038 1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence 344443 89999999999999999999999999999999999999999999999999 99999998874
No 88
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.29 E-value=8.4e-07 Score=108.48 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=59.6
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence 89999999999999999999999999999999999999999999999999 99999999984
No 89
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.28 E-value=2.8e-06 Score=96.09 Aligned_cols=149 Identities=18% Similarity=0.252 Sum_probs=100.5
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCee-ecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKI-EIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V-~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
....+.-|.+--+|.+|+-+++..+.|-+. -+-+.|.+.. +|-...|.-..+|-..++.+++-.. +.......
T Consensus 999 d~S~L~t~~ff~gm~~gEe~~v~ie~GktLii~l~aige~d-~~G~r~v~felNGq~R~i~v~Drs~----~~~~~~r~- 1072 (1149)
T COG1038 999 DVSVLPTPTFFYGLRPGEEIEVEIEKGKTLIIKLQAIGEPD-EKGMRTVYFELNGQPREIKVKDRSV----GSSVVARR- 1072 (1149)
T ss_pred CccccCcchhhccCCCCceEEEEecCCcEEEEEecccCCCC-cCCcEEEEEEeCCceeeeeeccccc----cccccccc-
Confidence 445667788888889888888877776432 1222222322 4455555556666666666554432 00000000
Q ss_pred CCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccC
Q 006594 164 DADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVG 243 (639)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~g 243 (639)
++ ...-|.|+--.| .|.|++..|++||.|++|
T Consensus 1073 --------------------------------KA--------d~~Np~higApm--------pG~Vv~v~V~~G~~Vk~G 1104 (1149)
T COG1038 1073 --------------------------------KA--------DPGNPGHIGAPM--------PGVVVEVKVKKGDKVKKG 1104 (1149)
T ss_pred --------------------------------cc--------CCCCccccCCCC--------CCceEEEEEccCCeecCC
Confidence 00 001112221122 389999999999999999
Q ss_pred CeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 244 DVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 244 d~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
|+|+.+|.+|+...|.+|.+|+|.+++|+.|+. |..|+.|..+.
T Consensus 1105 d~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038 1105 DVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred CeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence 999999999999999999999999999999999 99999998774
No 90
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.25 E-value=1.2e-06 Score=96.36 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=59.9
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|+.+.|++|+.|.+||+|+.+|.+|+...|.++.+|+|+++.+.+|+. |..|++|+.+.
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence 389999999999999999999999999999999999999999999999999 99999999884
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.18 E-value=2.4e-06 Score=94.71 Aligned_cols=62 Identities=27% Similarity=0.365 Sum_probs=60.0
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|+++.|++|++|++||+||.+..|||++-|.||.+|+++++++..|+. +..|+.|+.|+
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence 399999999999999999999999999999999999999999999999999 99999999885
No 92
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.12 E-value=4.1e-06 Score=73.40 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=52.2
Q ss_pred eEEecCCCCCCCceEEEEE-EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594 87 TVVGMPALSPTMSQGNIAK-WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~-w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~ 150 (639)
..+-|=+.+..+ =|+|.. |++++|+.|++||.||+||++|+..+|.||.+|+|.++..+.++.
T Consensus 16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 445555554443 377777 777779999999999999999999999999999999998888776
No 93
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.94 E-value=1.1e-05 Score=70.67 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=45.5
Q ss_pred cccce-eecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594 227 GNIAK-WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 227 g~i~~-w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~ 276 (639)
|+|.. |++++|+.|++||.|++||++|++.+|.||.+|+|.++..+.++.
T Consensus 29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 77777 777789999999999999999999999999999999998777765
No 94
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.81 E-value=2.5e-05 Score=70.07 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=46.6
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~ 150 (639)
..|-|=+.+.. .=|+|+.... ++|++|++||++++||++|+..+|.||.+|+|.++.-+..+.
T Consensus 17 ~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~ 80 (110)
T TIGR03077 17 VRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD 80 (110)
T ss_pred EEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence 34444444333 2245555444 669999999999999999999999999999999996655543
No 95
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.79 E-value=2.6e-05 Score=86.74 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=59.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|++++|++|+.|++||+||.+..+|+.+-|.||.+|+|+++.+..|+. +.-|+.+++++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence 389999999999999999999999999999999999999999999999999 99999998874
No 96
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.76 E-value=2.1e-05 Score=85.35 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=58.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
|.|.+++||+||.|.+||.||.++.|||...+.+|.+|+|+.+.++.|+. |.-|.+|..++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEeC
Confidence 68899999999999999999999999999999999999999999999999 99999998863
No 97
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.71 E-value=6.5e-05 Score=67.80 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=44.5
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~ 146 (639)
..|-|=+.+.. .=|+|+.... ++|+.|++||+||+||++|+..+|.||.+|+|.++.-.
T Consensus 19 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 19 VRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred EEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 44445444443 2255555544 56999999999999999999999999999999998433
No 98
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.68 E-value=6.2e-05 Score=89.77 Aligned_cols=68 Identities=24% Similarity=0.403 Sum_probs=63.3
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCcc
Q 006594 98 MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167 (639)
Q Consensus 98 ~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~ 167 (639)
-+-|++++|+|+.|+.|+.||+-+|||.|||.+.+.+..+|+| ++..++|+. +..|++|+.+..+..+
T Consensus 691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDdpS 758 (2196)
T KOG0368|consen 691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDDPS 758 (2196)
T ss_pred CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCChh
Confidence 3579999999999999999999999999999999999999988 899999999 9999999999876543
No 99
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.60 E-value=7.5e-05 Score=70.26 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=52.4
Q ss_pred eEEecCCCCCCCceEEEEEEEec-CCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKK-EGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~-~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~ 150 (639)
..|-|=++...+ =|+|+.+.+. +|++|++||+++.||++|+..+|.||.+|+|.++.....+.
T Consensus 31 ~~vGitd~aq~~-lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~ 94 (144)
T PRK13380 31 VTVGITDYAQTM-AGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDS 94 (144)
T ss_pred EEEecCHHHHHh-cCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhC
Confidence 455566655543 3788888886 89999999999999999999999999999999998876553
No 100
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.57 E-value=6.1e-05 Score=67.55 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=40.8
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~ 275 (639)
|.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.+++-+..+
T Consensus 30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 44544433 66999999999999999999999999999999999655544
No 101
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.54 E-value=0.00027 Score=78.07 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=58.8
Q ss_pred ceEEEEEEE-ecCCCeeecCCeEEEEEcc------------------------------------------------cce
Q 006594 99 SQGNIAKWR-KKEGDKIEIGDILCEIETD------------------------------------------------KAT 129 (639)
Q Consensus 99 ~eg~v~~w~-v~~Gd~V~~g~~l~~ietd------------------------------------------------K~~ 129 (639)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 469999998 9999999999999999842 013
Q ss_pred eEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
..|.||++|+|.++.+.+|+. |..|++|+.|.+.+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCCe
Confidence 579999999999999999999 999999999977654
No 102
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.52 E-value=0.00023 Score=76.06 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=32.0
Q ss_pred eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
..|.||++|+|..+.+..|+. |..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCC
Confidence 468999999999999999999 99999999997654
No 103
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.49 E-value=0.00025 Score=75.43 Aligned_cols=66 Identities=15% Similarity=0.295 Sum_probs=57.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.+++|++||.|++||+|+++++...
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 569999999999999999999999987310
Q ss_pred --------------------eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 --------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 --------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
...|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeCC
Confidence 1358899999999999999999 99999999997543
No 104
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.47 E-value=0.00029 Score=65.03 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=49.1
Q ss_pred EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEE---EecCCCcccc---CCC-cEEEEecC
Q 006594 101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAITVED 164 (639)
Q Consensus 101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~---~v~~g~~~v~---~G~-~l~~i~~~ 164 (639)
|+|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++ +....+. +. -|+ -|+.|...
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWLFKIKPS 107 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceEEEEEeC
Confidence 4444443 256999999999999999999999999999999999 5544455 54 454 78888644
No 105
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.44 E-value=0.00013 Score=65.79 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=38.5
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~ 271 (639)
|.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.++.-
T Consensus 32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~ 77 (114)
T PRK00624 32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT 77 (114)
T ss_pred CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 45555443 6699999999999999999999999999999999853
No 106
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.38 E-value=0.0003 Score=74.33 Aligned_cols=66 Identities=29% Similarity=0.464 Sum_probs=57.8
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999975311
Q ss_pred ---------------------eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 ---------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
...|+||++|+|..+.+..|+. |..|++|+.|.+.+
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcCC
Confidence 2369999999999999999999 99999999997654
No 107
>PRK12784 hypothetical protein; Provisional
Probab=97.38 E-value=0.0009 Score=54.98 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=59.0
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcc-cceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETD-KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietd-K~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
-.|+|-+.++.+++.|-+++.|+-|+++ +.-..|.--.+|.|.-+.|++||. |..+..|++++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence 4699999999999999999999999984 555668889999999999999999 9999999999754
No 108
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.36 E-value=0.00045 Score=74.46 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=31.5
Q ss_pred EEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 131 ~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.|+||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~ 243 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTD 243 (346)
T ss_pred EEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCC
Confidence 58899999999999999999 99999999997654
No 109
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.29 E-value=0.00019 Score=78.14 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=57.8
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
|.|.+.+|++||.|.+||.|+.++.+|+..-+.+|.+|+|+.+.+++|+. |.-|.+|..+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence 58899999999999999999999999999999999999999999999999 9999999876
No 110
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.20 E-value=0.00044 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=31.4
Q ss_pred eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
++.|.++.+|+|.+++|.+|+. |+.|++|+.|+..+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECcHH
Confidence 4678999999999999999999 99999999996543
No 111
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.20 E-value=0.00077 Score=73.78 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=58.9
Q ss_pred CCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------
Q 006594 93 ALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------- 128 (639)
Q Consensus 93 ~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------- 128 (639)
+++.- ..|+|.++++++||.|++||+|+.|++...
T Consensus 65 ~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 65 EVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEecc-CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34443 469999999999999999999999986311
Q ss_pred ---------------------------eeEEecCCceEEEEEEecCCCccccCC--CcEEEEecCCc
Q 006594 129 ---------------------------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD 166 (639)
Q Consensus 129 ---------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G--~~l~~i~~~~~ 166 (639)
...|.||++|+|.+.++++|+. |..| ++|+.|...+.
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEecCc
Confidence 1368999999999999999999 9885 58999876543
No 112
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.18 E-value=0.00041 Score=65.29 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=44.2
Q ss_pred cccceeecC-CCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594 227 GNIAKWRKN-EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 227 g~i~~w~v~-~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~ 276 (639)
|.|+.+.++ +|+.|++||+++.||++|+..+|.||.+|+|.++..+.-+.
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~ 94 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDS 94 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhC
Confidence 778887775 89999999999999999999999999999999997655543
No 113
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.17 E-value=0.00085 Score=73.67 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=31.9
Q ss_pred eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
..|.||++|+|..+.++.|+. |..|++|+.|.+.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCC
Confidence 369999999999999999999 99999999997554
No 114
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.12 E-value=0.00095 Score=71.50 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=31.7
Q ss_pred eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
..|.||++|+|..+.+..|+. |..|++|+.|.+.+
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecCC
Confidence 468999999999999999999 99999999996543
No 115
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.04 E-value=0.00076 Score=62.22 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=40.7
Q ss_pred EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC
Q 006594 101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149 (639)
Q Consensus 101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~ 149 (639)
|+|..+. .++|++|++||++|.||++|+..+|.||.+|+|.++.-..-+
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 4554443 357999999999999999999999999999999988765544
No 116
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.04 E-value=0.0013 Score=72.64 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=56.7
Q ss_pred ccccceee-cCCCCccccCCeeeEeecCc------------------------------------------------cee
Q 006594 226 QGNIAKWR-KNEGDKIEVGDVICEIETDK------------------------------------------------ATL 256 (639)
Q Consensus 226 ~g~i~~w~-v~~Gd~V~~gd~l~~vetdK------------------------------------------------~~~ 256 (639)
.|.|.+++ +++||.|++||+|++|++.. ..+
T Consensus 131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~ 210 (409)
T PRK09783 131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF 210 (409)
T ss_pred CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence 48899998 99999999999999998320 135
Q ss_pred eEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.|.||++|+|.++.+.+|+. |..|++|+.|.+..
T Consensus 211 ~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~ 244 (409)
T PRK09783 211 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMD 244 (409)
T ss_pred EEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCC
Confidence 79999999999999999999 99999999997543
No 117
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.00 E-value=0.0011 Score=70.71 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=31.8
Q ss_pred eeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 256 ~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
..|.||++|+|..+.+.+|+. |..|++|+.|.+..
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCC
Confidence 369999999999999999999 99999999997543
No 118
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.99 E-value=0.0017 Score=71.36 Aligned_cols=67 Identities=31% Similarity=0.310 Sum_probs=56.0
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.++++++||.|++||+|++|+....
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999985310
Q ss_pred ---------------------eeEEecCCceEEEEEEecCCCccccCCCc--EEEEecCCc
Q 006594 129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP--IAITVEDAD 166 (639)
Q Consensus 129 ---------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~--l~~i~~~~~ 166 (639)
...|.||++|+|.+++++.|+. |..|++ |+.|.+.+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEecCc
Confidence 1247899999999999999999 999985 777765543
No 119
>PRK01202 glycine cleavage system protein H; Provisional
Probab=96.97 E-value=0.0012 Score=60.86 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=45.5
Q ss_pred cccceee-cCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecC---CCCcccc---CCC-eEEEEe
Q 006594 227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP---EGSKDVA---VGQ-PIAITV 288 (639)
Q Consensus 227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~---~G~~~v~---vG~-~l~~i~ 288 (639)
|+|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.++..+ ..+. +. -|+ -|+.|.
T Consensus 37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl~~v~ 105 (127)
T PRK01202 37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWLFKIK 105 (127)
T ss_pred CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceEEEEE
Confidence 4454443 367999999999999999999999999999999999443 3333 33 333 566664
No 120
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=96.97 E-value=0.0011 Score=79.53 Aligned_cols=64 Identities=23% Similarity=0.452 Sum_probs=59.5
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.|++++|+|+.|+.|..||+-+|||.+|+.|.+.++.+|.| ....++|+. +..|++|+.+.-+.
T Consensus 693 ~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 693 PGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDD 756 (2196)
T ss_pred CccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCC
Confidence 58999999999999999999999999999999999999998 556899999 99999999997544
No 121
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.96 E-value=0.0018 Score=70.99 Aligned_cols=66 Identities=27% Similarity=0.274 Sum_probs=56.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEccc---------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDK--------------------------------------------------- 127 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK--------------------------------------------------- 127 (639)
..|.|.++++++||.|++||+|++|+...
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998531
Q ss_pred --------------------ceeEEecCCceEEEEEEecCCCccccCCC--cEEEEecCC
Q 006594 128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVEDA 165 (639)
Q Consensus 128 --------------------~~~~i~s~~~G~i~~~~v~~g~~~v~~G~--~l~~i~~~~ 165 (639)
....|.||++|+|.+.+++.|+. |..|+ +|+.|.+.+
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~ 206 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRLD 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEecC
Confidence 01368999999999999999999 99985 688886544
No 122
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=96.89 E-value=0.0017 Score=69.04 Aligned_cols=64 Identities=14% Similarity=0.289 Sum_probs=56.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.+++|++||.|++||+|++++....
T Consensus 55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a 134 (310)
T PRK10559 55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV 134 (310)
T ss_pred ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999987321
Q ss_pred -------------------eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 255 -------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 255 -------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
...|.||++|+|.++.+++|+. |..|++|+.|.+.
T Consensus 135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~ 188 (310)
T PRK10559 135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeC
Confidence 1359999999999999999999 9999999998754
No 123
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=96.83 E-value=0.0013 Score=69.41 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=56.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|+.+++.-.
T Consensus 34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~ 113 (322)
T TIGR01730 34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA 113 (322)
T ss_pred cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 48899999999999999999999976321
Q ss_pred --------------------eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
...|.||.+|+|..+.+..|+. +..|++|+.|...
T Consensus 114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 168 (322)
T TIGR01730 114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcC
Confidence 2369999999999999999999 9999999999753
No 124
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.79 E-value=0.002 Score=69.39 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=31.3
Q ss_pred eEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.|.||++|+|.++.+.+|+. |..|++|+.|....
T Consensus 210 ~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~ 243 (346)
T PRK10476 210 TVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTD 243 (346)
T ss_pred EEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCC
Confidence 68999999999999999999 99999999997653
No 125
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.77 E-value=0.003 Score=68.74 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=55.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.+|++++||.|++||+|++|++...
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 359999999999999999999999986310
Q ss_pred -----------------------------------eeEEecCCceEEEEEEecCCCccccCCC---cEEEEecCC
Q 006594 129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQ---PIAITVEDA 165 (639)
Q Consensus 129 -----------------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~---~l~~i~~~~ 165 (639)
...|+||++|+|..+++..|+. |..|+ +|+.|.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS 221 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcE-eecccCCceEEEEecCC
Confidence 1269999999999999999999 97764 788886554
No 126
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.76 E-value=0.0026 Score=70.44 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=55.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.++++++||.|++||+|++|+....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 569999999999999999999999975310
Q ss_pred ---------------------eeEEecCCceEEEEEEecCCCccccCCC--cEEEEecCC
Q 006594 129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVEDA 165 (639)
Q Consensus 129 ---------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~--~l~~i~~~~ 165 (639)
...|+||++|+|..+.+..|+. |..|+ +|+.|.+.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~~~ 232 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQTH 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEecCC
Confidence 2268999999999999999999 99984 687775443
No 127
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=96.74 E-value=0.00084 Score=72.31 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=37.2
Q ss_pred cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (639)
Q Consensus 330 ~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~ 369 (639)
++||++|++|+++|||++.++|||++|||+++||+++...
T Consensus 7 ~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~ 46 (347)
T PRK14843 7 RATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT 46 (347)
T ss_pred cCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence 4689999999999999999999999999999999988653
No 128
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.69 E-value=0.0016 Score=60.03 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=40.0
Q ss_pred cccceee-cCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594 227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (639)
Q Consensus 227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~ 275 (639)
|.|.-+. .++|+.|++||+++.||++|+..+|.||.+|+|.++.-+.-+
T Consensus 36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 4454442 367999999999999999999999999999999998644433
No 129
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.62 E-value=0.0037 Score=57.27 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=36.0
Q ss_pred EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCC
Q 006594 101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148 (639)
Q Consensus 101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g 148 (639)
|+|+.+. .++|+.|++|++++.||+.|+..++.||.+|+|.++.-..-
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~ 79 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELL 79 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccc
Confidence 4444443 35599999999999999999999999999999988865544
No 130
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.55 E-value=0.0033 Score=69.01 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=31.5
Q ss_pred eEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.|.||++|+|..+.++.|+. |..|++|+.|.+..
T Consensus 217 ~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 217 KIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPAT 250 (390)
T ss_pred EEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCC
Confidence 69999999999999999999 99999999997654
No 131
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.51 E-value=0.0025 Score=67.54 Aligned_cols=66 Identities=27% Similarity=0.507 Sum_probs=48.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc---------------------e----------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA---------------------T---------------------------- 129 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~---------------------~---------------------------- 129 (639)
..|.| +|+|++||+|++||+|++++++.. .
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 36999 999999999999999999986311 1
Q ss_pred ------------------e----------EEecCCceEEE-------------------------EEEecCCCccccCCC
Q 006594 130 ------------------V----------EFESLEEGFLA-------------------------KILVPEGSKDVPVGQ 156 (639)
Q Consensus 130 ------------------~----------~i~s~~~G~i~-------------------------~~~v~~g~~~v~~G~ 156 (639)
+ .|.||++|+|. ++.+..|+. |..|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~-v~~g~ 185 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQY-VAAGQ 185 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-E-ETSTT
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCE-ECCCc
Confidence 1 28999999999 999999999 99999
Q ss_pred cEEEEecCCc
Q 006594 157 PIAITVEDAD 166 (639)
Q Consensus 157 ~l~~i~~~~~ 166 (639)
+|+.|.+...
T Consensus 186 ~l~~i~~~~~ 195 (328)
T PF12700_consen 186 PLFTIADLSN 195 (328)
T ss_dssp CSEEEEEESE
T ss_pred eeeeeccCCc
Confidence 9999976643
No 132
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.45 E-value=0.0045 Score=47.45 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=30.6
Q ss_pred eeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 255 TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 255 ~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
++.|.++.+|.|.++++++|+. |+.|++|+.+..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~ 35 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDS 35 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECc
Confidence 3578899999999999999999 999999999964
No 133
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.37 E-value=0.0049 Score=65.99 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=31.2
Q ss_pred eeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 256 ~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
..|.||++|+|..+.+.+|+. |..|++|+.|...
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecC
Confidence 479999999999999999999 9999999999654
No 134
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.34 E-value=0.0052 Score=67.30 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=54.9
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|+.|++...
T Consensus 71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~ 150 (385)
T PRK09578 71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ 150 (385)
T ss_pred cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999987421
Q ss_pred --------------------eeeEecCCCeeEEEEecCCCCccccCC--CeEEEEecC
Q 006594 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED 290 (639)
Q Consensus 255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG--~~l~~i~~~ 290 (639)
...|.||++|+|.++++++|+. |..| ++|+.|...
T Consensus 151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEec
Confidence 1369999999999999999999 9885 588888643
No 135
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.31 E-value=0.0098 Score=63.49 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=28.5
Q ss_pred EEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 131 ~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.|+||++|+|..+++..|+. |.. ++|+.|...+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~-v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEV-IGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCc-cCC-CccEEEecCC
Confidence 57899999999999999998 886 8999886543
No 136
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.11 E-value=0.0081 Score=66.13 Aligned_cols=64 Identities=27% Similarity=0.297 Sum_probs=54.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|++|+....
T Consensus 73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~ 152 (397)
T PRK15030 73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 152 (397)
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999986421
Q ss_pred --------------------eeeEecCCCeeEEEEecCCCCccccCCCe--EEEEecC
Q 006594 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP--IAITVED 290 (639)
Q Consensus 255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~--l~~i~~~ 290 (639)
...|.||++|+|.++.++.|+. |..|++ |+.|...
T Consensus 153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEec
Confidence 1359999999999999999999 999985 6777543
No 137
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.08 E-value=0.0087 Score=65.57 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=54.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|++|+....
T Consensus 69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~ 148 (385)
T PRK09859 69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE 148 (385)
T ss_pred cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 48899999999999999999999986410
Q ss_pred --------------------eeeEecCCCeeEEEEecCCCCccccCCC--eEEEEecC
Q 006594 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVED 290 (639)
Q Consensus 255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~--~l~~i~~~ 290 (639)
...|.||++|+|.++++..|+. |..|+ +|+.|...
T Consensus 149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEec
Confidence 1369999999999999999999 99984 68887543
No 138
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.04 E-value=0.0068 Score=55.61 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=47.5
Q ss_pred ceEEecCCCCCCCceEEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~ 149 (639)
...|-|-+.+.. .=|.|+.+. .++|+.|++|+.++.||+-|+..+|.||.+|.|.++.-..-+
T Consensus 25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~ 88 (131)
T COG0509 25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVD 88 (131)
T ss_pred EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhc
Confidence 345555555554 236665553 467899999999999999999999999999999877654443
No 139
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.03 E-value=0.0093 Score=54.65 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=34.6
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~ 271 (639)
|.|+.+.. ++|+.|++|++++.||++|.+.++.||.+|+|.++.-
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 55555443 5699999999999999999999999999999988853
No 140
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=95.96 E-value=0.022 Score=58.23 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=50.6
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|.- ++.+|-. |..|..|++|+.-.
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~-V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLT-VTEGLKIGDVDPRG 230 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCC-cCCCCEEEEECCCC
Confidence 4555 669999999999999999974 7999999999955 5678988 99999999997544
No 141
>PRK12784 hypothetical protein; Provisional
Probab=95.75 E-value=0.028 Score=46.44 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=57.6
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc-eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA-TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~-~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
.|++.++++.++++|-+=+.|+-|++..- -..|.-..+|.|.-+.+++|+. +..+..|+.+.++
T Consensus 13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD 77 (84)
T PRK12784 13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD 77 (84)
T ss_pred ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence 48999999999999999999999999544 4568889999999999999999 9999999998654
No 142
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=95.69 E-value=0.013 Score=64.80 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=53.6
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|++|.....
T Consensus 95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~ 174 (415)
T PRK11556 95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174 (415)
T ss_pred cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 58999999999999999999999976310
Q ss_pred --------------------eeeEecCCCeeEEEEecCCCCccccCCC--eEEEEec
Q 006594 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVE 289 (639)
Q Consensus 255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~--~l~~i~~ 289 (639)
...|.||++|+|..+.+..|+. |..|+ +|+.|..
T Consensus 175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~ 230 (415)
T PRK11556 175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEec
Confidence 1269999999999999999999 99984 6777753
No 143
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.69 E-value=0.0096 Score=54.63 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=37.8
Q ss_pred ccccee-ecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594 227 GNIAKW-RKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (639)
Q Consensus 227 g~i~~w-~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~ 270 (639)
|.|+-. +.++|+.|++|+.++.||+-|+..+|.||.+|+|.++.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 455543 34778999999999999999999999999999998875
No 144
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=95.67 E-value=0.017 Score=62.90 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=28.2
Q ss_pred eEecCCCeeEEEEecCCCCccccCC---CeEEEEecC
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVG---QPIAITVED 290 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG---~~l~~i~~~ 290 (639)
.|.||++|+|..+.+..|+. |..| ++|+.|...
T Consensus 185 ~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM 220 (370)
T ss_pred EEECCCCcEEEeeecCCCcE-eecccCCceEEEEecC
Confidence 69999999999999999998 9766 478888643
No 145
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=95.56 E-value=0.0082 Score=63.57 Aligned_cols=63 Identities=29% Similarity=0.499 Sum_probs=47.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcce--------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKAT-------------------------------------------------- 255 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~-------------------------------------------------- 255 (639)
.|.| +|++++||.|++||+|++++++...
T Consensus 29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 107 (328)
T PF12700_consen 29 SGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAIS 107 (328)
T ss_dssp -EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSS
T ss_pred CEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhH
Confidence 4889 9999999999999999999875441
Q ss_pred -----------------e----------eEecCCCeeEE-------------------------EEecCCCCccccCCCe
Q 006594 256 -----------------L----------EFECLEEGYLA-------------------------KILAPEGSKDVAVGQP 283 (639)
Q Consensus 256 -----------------~----------ei~s~~~G~v~-------------------------~i~~~~G~~~v~vG~~ 283 (639)
. .|.||++|+|. .+.+.+|+. |..|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~-v~~g~~ 186 (328)
T PF12700_consen 108 KEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQY-VAAGQP 186 (328)
T ss_dssp TCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-E-ETSTTC
T ss_pred HHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCE-ECCCce
Confidence 1 29999999999 999999999 999999
Q ss_pred EEEEecC
Q 006594 284 IAITVED 290 (639)
Q Consensus 284 l~~i~~~ 290 (639)
|+.|...
T Consensus 187 l~~i~~~ 193 (328)
T PF12700_consen 187 LFTIADL 193 (328)
T ss_dssp SEEEEEE
T ss_pred eeeeccC
Confidence 9999654
No 146
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.03 E-value=0.092 Score=46.50 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCC
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g 148 (639)
|.-.+-.|++||+|.+||.|++.+ +-.+..|-|+.+|+|..|.-...
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~~~ 85 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKRPI 85 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeeeEc
Confidence 333466899999999999999986 46688999999999988765544
No 147
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.33 E-value=0.1 Score=53.39 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=49.5
Q ss_pred cceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 229 IAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
+.+..++-||.|++||+|+.|+. .+|.||.+|+|..+ +..|-. |..|--|+.|..-+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~-V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLT-VTEGLKIGDVDPRG 230 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCC-cCCCCEEEEECCCC
Confidence 44558999999999999999975 69999999999886 689988 99999999996443
No 148
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=94.29 E-value=0.097 Score=49.43 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=38.2
Q ss_pred cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 109 ~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~ 150 (639)
++|-.|.+||-++-+|+-|+.-+|.+|.+|.|.+|..+-.+.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En 130 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence 578899999999999999999999999999999998776665
No 149
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=94.13 E-value=0.085 Score=54.22 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=30.3
Q ss_pred eEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
.|.||++|+|..+.+..|+. |..|++|+.|.+.
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~ 122 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDY-VAPQAELFRVADL 122 (265)
T ss_pred EEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcC
Confidence 47999999999999999999 9999999998754
No 150
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.65 E-value=0.086 Score=54.15 Aligned_cols=42 Identities=38% Similarity=0.526 Sum_probs=36.1
Q ss_pred EEEEecCCCeeecCCeEEEEEcccce--eEEecCCceEEEEEEecCCCc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETDKAT--VEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietdK~~--~~i~s~~~G~i~~~~v~~g~~ 150 (639)
-+..|+|||+|+.||+|++ ||-. +-++||.+|+|++|.. |+.
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r 84 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER 84 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence 5789999999999999997 7764 5589999999999887 555
No 151
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.54 E-value=0.2 Score=53.07 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=46.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc---ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET---DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet---dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
+=+....++.||.|++||+|++|=. +....+|.||.+|+|.-+. ..-. |..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~-v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPL-VYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCe-ecCCceEEEe
Confidence 4466888999999999999999843 4557789999999995544 4456 8899999876
No 152
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=93.46 E-value=0.21 Score=54.32 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=46.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.|=+.++.++.||.|++||+|++|=. +...++|.||.+|+|.- ....-. |..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~-V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRF-VRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCcc-ccCCCeEEEe
Confidence 35566899999999999999999853 34455579999999944 445556 8899999876
No 153
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.36 E-value=0.25 Score=52.03 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=45.1
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc--ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet--dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
+-+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..-. |..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence 3345889999999999999999953 1334789999999995444 4445 8899999876
No 154
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=93.05 E-value=0.14 Score=45.33 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=38.0
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~ 270 (639)
|.-.+-.|++||.|++||.|++.+. -...-|.|+.+|+|..|.
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence 5666789999999999999999974 568899999999999984
No 155
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.61 E-value=0.42 Score=51.07 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=46.2
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
+=+....++.||.|++||+|++|=. .....+|.||.+|+|.-.. ..-. |..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~-v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGL-VRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCc-cCCCCEEEEEe
Confidence 4466899999999999999999853 2445679999999996444 3345 88888898874
No 156
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=92.44 E-value=0.34 Score=51.94 Aligned_cols=58 Identities=22% Similarity=0.371 Sum_probs=45.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
+=+....++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..-. |..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence 3455889999999999999999843 2246689999999996644 4455 8999999876
No 157
>PF13437 HlyD_3: HlyD family secretion protein
Probab=92.18 E-value=0.18 Score=44.23 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=30.4
Q ss_pred EEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 131 ~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.|.||++|+|..+.++.|+. |..|++|+.|.+.
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence 37899999999999999999 9999999999765
No 158
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.67 E-value=0.41 Score=50.42 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=45.4
Q ss_pred cccceeecCCCCccccCCeeeEeec--CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
+-+.++.++.||.|++||+|++|.. .....+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence 3456789999999999999999954 2334789999999996654 3344 8889998876
No 159
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.48 E-value=0.38 Score=51.00 Aligned_cols=58 Identities=29% Similarity=0.232 Sum_probs=47.7
Q ss_pred cccceeecCCCCccccCCeeeEeec---CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET---DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
+=+...+++.||.|++||+|++|=. +...-+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~-v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPL-VYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCe-ecCCceEEEe
Confidence 4477788999999999999999855 4567789999999997764 4455 8889998876
No 160
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.43 E-value=0.13 Score=53.75 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=24.8
Q ss_pred eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
+.|.+++.|+|.+|+|++|+. |+.|++|+.|++..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEeec
Confidence 468899999999999999999 99999999998643
No 161
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=90.98 E-value=0.34 Score=45.84 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=36.8
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeE-EecCCceEEEEEEecCC
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVPEG 148 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~-i~s~~~G~i~~~~v~~g 148 (639)
.||..+-..+.+||+|.+||.|+-+.|-|-.+- +.||.+|+|.-+.=-.+
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~ 137 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW 137 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence 367777889999999999999999999999987 89999999976654433
No 162
>PF13437 HlyD_3: HlyD family secretion protein
Probab=90.85 E-value=0.33 Score=42.58 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=29.7
Q ss_pred eEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+|.||++|+|..+.++.|+. |..|++|+.|...
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence 47899999999999999999 9999999999765
No 163
>COG3608 Predicted deacylase [General function prediction only]
Probab=90.26 E-value=0.76 Score=49.00 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=48.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcc---cceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETD---KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietd---K~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
++-+++..|+.||.|++||+|+.|=.. +..++|+|+.+|+|..+.... . |+.|+.++.+.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeec
Confidence 556779999999999999999988653 889999999999997766543 3 66776666653
No 164
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=90.24 E-value=0.34 Score=51.67 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=35.2
Q ss_pred EEEcccceeEEecCCc---eEEEEEEecCCCccccCCCcEEEEecC
Q 006594 122 EIETDKATVEFESLEE---GFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 122 ~ietdK~~~~i~s~~~---G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.|+..--.+.|.++.+ |+|.+++|++||. |+.|++|+.|+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~~G~~L~~ld~~ 50 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQAGQVLAELDSR 50 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCE-ecCCcEEEEecCc
Confidence 3444444567889999 9999999999999 9999999999765
No 165
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=90.20 E-value=0.58 Score=50.91 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=46.8
Q ss_pred ccccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.+=+...+++.||.|++||+|++|-. +....+|.||.+|+|..+ ...-. |..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~-V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRF-VRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCcc-ccCCCeEEEe
Confidence 35578899999999999999998854 334555799999999765 44555 8899998876
No 166
>COG3608 Predicted deacylase [General function prediction only]
Probab=90.08 E-value=0.77 Score=48.94 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=48.8
Q ss_pred cccccceeecCCCCccccCCeeeEeec---CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 225 NQGNIAKWRKNEGDKIEVGDVICEIET---DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 225 ~~g~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.++-+++-+++.||.|++||+|+.|-. -+...||.|+.+|+|..+.-.- - +..|+.++++..
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~~ 326 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVGR 326 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeecc
Confidence 356689999999999999999998765 4889999999999998874321 2 566666666643
No 167
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=89.98 E-value=10 Score=41.99 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=90.3
Q ss_pred EeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC-------
Q 006594 436 YLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK------- 508 (639)
Q Consensus 436 ~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~------- 508 (639)
+.+..+++..+.+..++. +.|++++++-|++.+|.++ ++.. ++ .....+.+++.|+...
T Consensus 231 ~~~~~~~~~~l~~~a~~~------g~T~ndvllaa~~~al~~~--~~~~-----~~-~~~~~i~~~~pv~~R~~~~~~~~ 296 (446)
T TIGR02946 231 FAAQSLPLADVKAVAKAF------GVTINDVVLAAVAGALRRY--LEER-----GE-LPDDPLVAMVPVSLRPMEDDSEG 296 (446)
T ss_pred EEeeccCHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHH--HHHc-----CC-CCCCceEEEEeeeccccccCCCC
Confidence 346677777877776666 7999999999999999875 2211 11 1122467777776321
Q ss_pred C----eEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCC-------------CCC-----------CC--CCCeEEEEeCC
Q 006594 509 G----LMTPIVRNADQKSISAISMEVKELAEKARAGKL-------------APH-----------EF--QGGTFSISNLG 558 (639)
Q Consensus 509 g----l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l-------------~~~-----------d~--~ggtftISnlG 558 (639)
| .++..+. ....+..+...++++....+++... .|. .. ..-+++|||+|
T Consensus 297 ~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvp 375 (446)
T TIGR02946 297 GNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNVP 375 (446)
T ss_pred CCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCCC
Confidence 1 2222222 2333444544556655555554410 110 00 12378899997
Q ss_pred CCCcc---------ceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHH
Q 006594 559 MFPVD---------QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCS 629 (639)
Q Consensus 559 ~~g~~---------~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~ 629 (639)
..... .+.++.....-..++++-.. .+ ..|.+++++|-.++.. ..+|.+.|++
T Consensus 376 g~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~-----------g~l~~~~~~d~~~~~d--~~~l~~~~~~ 437 (446)
T TIGR02946 376 GPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YN-----------GQLDFGLLADRDAVPD--PQELADALEA 437 (446)
T ss_pred CCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cC-----------CeEEEEEeechhhCCC--HHHHHHHHHH
Confidence 65421 12222111111122222111 01 2689999999988873 7778888877
Q ss_pred HHhc
Q 006594 630 NFSD 633 (639)
Q Consensus 630 ~Le~ 633 (639)
.|+.
T Consensus 438 ~l~~ 441 (446)
T TIGR02946 438 ALEE 441 (446)
T ss_pred HHHH
Confidence 7765
No 168
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.86 E-value=0.82 Score=48.83 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=47.1
Q ss_pred cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
+-+....++.||.|++||+|++|-. ....-+|.||.+|+|.-+.. .-. |..|+.|+.|.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~--~~~-v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRP--PGL-VRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeC--CCc-cCCCCEEEEEe
Confidence 4467788999999999999999865 34567899999999976643 344 78888888874
No 169
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=89.50 E-value=0.39 Score=50.97 Aligned_cols=40 Identities=33% Similarity=0.469 Sum_probs=34.1
Q ss_pred EEEecCCCeeecCCeEEEEEcccc--eeEEecCCceEEEEEEecC
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKA--TVEFESLEEGFLAKILVPE 147 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~--~~~i~s~~~G~i~~~~v~~ 147 (639)
...|++||.|++|++|+| ||- .+-++||.+|+|..|+-.+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 567999999999999998 766 4668999999999887543
No 170
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=89.38 E-value=0.35 Score=49.75 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=35.3
Q ss_pred cccceeecCCCCccccCCeeeEeecCcce--eeEecCCCeeEEEEec
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKAT--LEFECLEEGYLAKILA 271 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~--~ei~s~~~G~v~~i~~ 271 (639)
|..-+.+|+|||.|+.||+|++ ||-+ +-+.||.+|+|.+|.-
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 4456789999999999999985 6665 5588999999999876
No 171
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.30 E-value=0.86 Score=47.98 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=40.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEc--ccceeEEecCCceEEEEEEecCCCccccCCCcE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~iet--dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l 158 (639)
.+=+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+... -. |..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence 34566888999999999999999832 244567999999999554433 33 5666654
No 172
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=89.10 E-value=5.4 Score=44.84 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=22.9
Q ss_pred EEEEEEEecccccChHHH-HHHHHHHHHHH
Q 006594 603 KMNLTLSADHRVFEGKVG-GAFFSALCSNF 631 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~a-a~Fl~~l~~~L 631 (639)
.|++++++=.-+++-.+. -.|++.|++.|
T Consensus 451 ~L~i~~s~~~~~~~~~~~~~~~~~~~~~~~ 480 (480)
T PF07247_consen 451 GLNISISWQEGIVEDEEMEDEFMELFKQNL 480 (480)
T ss_pred ceEEEEEEeCCcccccchHHHHHHHHHhhC
Confidence 588999988888876666 58999888764
No 173
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=88.23 E-value=0.48 Score=52.89 Aligned_cols=44 Identities=30% Similarity=0.367 Sum_probs=35.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEe
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV 145 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v 145 (639)
|..-+-.|++||+|..||+|++-. .-.++.|.||.+|+|++|..
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~-~~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDK-KNPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecC-CCceEEEEcCCCeEEEEEec
Confidence 334567899999999999999843 12678899999999999954
No 174
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=87.79 E-value=1.2 Score=47.74 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=46.7
Q ss_pred cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
+=+...+++.||.|++||+|++|-. .....+|.||.+|+|..+. ..-. |..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence 4466788999999999999999864 3346789999999997754 4455 8889988876
No 175
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=87.67 E-value=2.3 Score=56.00 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=30.4
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCC
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g 148 (639)
..+|++|+.|+.|++||+. |=-+..|-+..+|+|.=..+.+|
T Consensus 2423 ~l~v~~g~~V~~g~~la~w--dp~~~piisE~~G~v~f~d~~~g 2464 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEW--DPYTLPIITEKTGTVSYQDLKDG 2464 (2836)
T ss_pred EEEecCCCEecCCCEEEEE--cCCCcceEeecceEEEEEEEecc
Confidence 4789999999999999997 45566666666666654444444
No 176
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.55 E-value=0.71 Score=50.71 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=35.8
Q ss_pred EEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 122 ~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.|........|.++.+|+|.+++|.+||. |+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDR-VKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCE-ecCCCeEEEEccch
Confidence 34455666678899999999999999999 99999999997654
No 177
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.11 E-value=0.77 Score=51.58 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=32.2
Q ss_pred eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
...|.++..|+|.+|+|.+||. |+.|++|+.|+...
T Consensus 59 ~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 59 LSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDNGN 94 (457)
T ss_pred eEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECchH
Confidence 4578899999999999999999 99999999996543
No 178
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.06 E-value=0.74 Score=51.05 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.5
Q ss_pred eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+.|.++.+|+|.+++|++||. |+.|++|+.|+...
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~-V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQ-VKKGQVVARLFQPE 93 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCE-ECCCCEEEEECcHH
Confidence 4478999999999999999999 99999999997654
No 179
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=86.46 E-value=0.6 Score=39.03 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+.++++.||.|++||+||+|=++
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEES
T ss_pred eEecCcCcCEECCCCeEEEEEcC
Confidence 47999999999999999998664
No 180
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=86.25 E-value=0.6 Score=48.77 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=23.8
Q ss_pred eeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 256 ~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
..|.+++.|+|.+|+|++|+. |+.|++|+.|..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--
T ss_pred EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEe
Confidence 468899999999999999999 999999999963
No 181
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=86.14 E-value=0.67 Score=51.85 Aligned_cols=44 Identities=34% Similarity=0.410 Sum_probs=35.4
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEe
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV 145 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v 145 (639)
|...+-.|++||+|..||.|++-.. -.++.+.||.+|+|+.|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~-~~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKK-NPGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEcc
Confidence 3334678999999999999997432 2578899999999999953
No 182
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=85.21 E-value=1.3 Score=42.01 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=33.9
Q ss_pred ccccceeecCCCCccccCCeeeEeecCccee-eEecCCCeeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-EFECLEEGYLAKIL 270 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-ei~s~~~G~v~~i~ 270 (639)
+|..+-..+.+||.|.+||.|+-+.|-|-.+ -+.||.+|+|.-+.
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 5677778889999999999999999999987 48999999997664
No 183
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=84.59 E-value=0.94 Score=50.60 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=34.5
Q ss_pred EEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEE
Q 006594 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~ 144 (639)
.+-.|++||+|+.||.|++-+ ...+..|.||.+|+|++|.
T Consensus 43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 357899999999999999963 3368999999999998875
No 184
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=84.44 E-value=0.71 Score=43.76 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=37.0
Q ss_pred CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 235 ~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~ 276 (639)
++|-.|.+||-++-+|.=|+.-||.+|.+|.|.+|.-+-.+.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En 130 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence 677889999999999999999999999999999997555443
No 185
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=84.06 E-value=1.3 Score=45.32 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=31.9
Q ss_pred eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+.|+||++|+|..+.+..|+. |..|++|+.|.+..
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGDY-VAPQAELFRVADLG 123 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcCC
Confidence 3468999999999999999999 99999999997654
No 186
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=83.98 E-value=1.8 Score=48.49 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=37.4
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~ 271 (639)
|.--+.+|++||+|++||.|++-... ...-+.||.+|+|..|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 56678999999999999999966544 468899999999999943
No 187
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=83.97 E-value=1.7 Score=45.67 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=41.2
Q ss_pred cccceeecCCCCccccCCeeeEeec--CcceeeEecCCCeeEEEEecCCCCccccCCCeE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPI 284 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l 284 (639)
+-+.+.+++.||.|++||+|++|=. .....+|.||++|+|.-+... -. |..|+.|
T Consensus 231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l 287 (288)
T cd06254 231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL 287 (288)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence 4477888999999999999999932 244678999999999776432 23 5556554
No 188
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=83.10 E-value=1.6 Score=48.89 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=38.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~ 271 (639)
.|.--+.+|++||+|+.||+|++-... ..+-|.||.+|+|++|.-
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 366678999999999999999987644 478899999999999953
No 189
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=82.23 E-value=1.1 Score=37.54 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=22.1
Q ss_pred ccccceeecCCCCccccCCeeeEeecCc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDK 253 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (639)
-+.=+.++++.||.|++||+||+|-++.
T Consensus 30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 30 PAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 3455689999999999999999998764
No 190
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=81.50 E-value=3.6 Score=43.47 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=29.5
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc--ccceeEEecCCceEEEEE
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKI 143 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet--dK~~~~i~s~~~G~i~~~ 143 (639)
+=+.+..++.||.|++||+|++|-. .....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 3455777888888888888888742 122445788888887554
No 191
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=80.30 E-value=3.3 Score=43.54 Aligned_cols=46 Identities=30% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 117 g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
-.....++. .-...+.++..|.|.+++|++||. |+.|++|+.++..
T Consensus 55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~~ 100 (372)
T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDPS 100 (372)
T ss_pred eeeeeEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECCc
Confidence 334445554 334478888999999999999999 9999999999763
No 192
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.28 E-value=2.8 Score=47.06 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=33.8
Q ss_pred eecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 249 IETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
|..+.-...|.+++.|+|.+|+|++|+. |..|++|+.+..
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~ 92 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDN 92 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECc
Confidence 3433445678899999999999999999 999999999954
No 193
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=79.19 E-value=2 Score=48.09 Aligned_cols=43 Identities=21% Similarity=0.214 Sum_probs=36.5
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~ 270 (639)
|.-.+..|++||+|++||+|++-. ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 445578999999999999999983 3357899999999999984
No 194
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=79.07 E-value=2.8 Score=46.50 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.3
Q ss_pred CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 252 DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 252 dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+.-...|.++..|+|.++++++|+. |..|++|+.|...
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~-V~kGq~L~~l~~~ 92 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQ-VKKGQVVARLFQP 92 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCE-ECCCCEEEEECcH
Confidence 3445689999999999999999999 9999999999643
No 195
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.53 E-value=2.8 Score=45.95 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=37.3
Q ss_pred eEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 247 CEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 247 ~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
..|........|.++.+|+|.+++|++|+. |+.|++|+.+...
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V~kG~~L~~ld~~ 77 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDR-VKAGQVLVELDAT 77 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCE-ecCCCeEEEEccc
Confidence 355666777779999999999999999999 9999999999654
No 196
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=78.32 E-value=1.8 Score=51.15 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=40.0
Q ss_pred CcceEEecCC-CCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEE
Q 006594 84 PSHTVVGMPA-LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144 (639)
Q Consensus 84 ~~~~~v~~p~-~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~ 144 (639)
+....|.|.+ +|. -.+-.|++||+|.+||+|++-+ .-.++.|.||.+|+|..|.
T Consensus 34 p~~~~ipl~qhiG~------~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 34 PQRLVIPLKQHIGA------EGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCEEEEECccCCCC------CCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 4445555554 333 2356899999999999999753 3357899999999998875
No 197
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=78.25 E-value=2 Score=36.90 Aligned_cols=24 Identities=42% Similarity=0.846 Sum_probs=19.4
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET 125 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet 125 (639)
.++ +|++++||.|++|++|++++-
T Consensus 45 ~~v-~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 45 LEV-EWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEE-EESS-TT-EEETTCEEEEEEE
T ss_pred EEE-EEEeCCCCCccCCcEEEEEEe
Confidence 445 799999999999999999985
No 198
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=78.00 E-value=2.1 Score=47.99 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=37.6
Q ss_pred EEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEE---ecCCC
Q 006594 104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL---VPEGS 149 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~---v~~g~ 149 (639)
...+|++||+|.+||+|.+=+. ....+.||.+|+|.+|. +..+.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~s 91 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPS 91 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcc
Confidence 3568999999999999998764 78999999999999998 44443
No 199
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=77.29 E-value=3.7 Score=40.50 Aligned_cols=53 Identities=28% Similarity=0.366 Sum_probs=41.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEE
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA 159 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~ 159 (639)
+.|. .++++|+.|++||.+.-++-. .++++--|.+ .++.+++|++ |..|+.|.
T Consensus 130 ~~i~-~~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~-V~~G~tli 182 (189)
T TIGR00164 130 RRIV-CYVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK-VTAGETVL 182 (189)
T ss_pred cEEE-EecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE-EEeceEEE
Confidence 3443 346899999999999999866 5677767765 3789999999 99999664
No 200
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=76.95 E-value=2.5 Score=45.19 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=32.5
Q ss_pred eeecCCCCccccCCeeeEeecCcce--eeEecCCCeeEEEEec
Q 006594 231 KWRKNEGDKIEVGDVICEIETDKAT--LEFECLEEGYLAKILA 271 (639)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~--~ei~s~~~G~v~~i~~ 271 (639)
..+|++||.|++|++|+| ||-. +-++||.+|+|..|.-
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~R 81 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHR 81 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeec
Confidence 468999999999999986 6654 5699999999999864
No 201
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=76.92 E-value=60 Score=32.78 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=26.9
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHHhchh
Q 006594 603 KMNLTLSADHRVFEGKVGGAFFSALCSNFSDIR 635 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~ 635 (639)
...|-+.+||-++||.-...|+++|.+++++..
T Consensus 128 ~~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 128 EYFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred cchhcccccccccccccchhhhhhhHHhhhccc
Confidence 456778899999999999999999999887754
No 202
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=76.87 E-value=2.9 Score=45.32 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=32.3
Q ss_pred eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+.|.+.++|+|.+++|.+++. |+.|++|+.|++..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~-Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQL-VKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCE-ecCCCeEEEECcHH
Confidence 4568899999999999999999 99999999997654
No 203
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=76.64 E-value=34 Score=34.21 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=40.3
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI 284 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l 284 (639)
+.|+. .+++|+.+++||.+.-++-. .++++--|.+ .++.+++|++ |..|+.+
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv 201 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV 201 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence 44444 45899999999999999987 4566665654 2889999999 9999754
No 204
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=76.63 E-value=3.8 Score=40.99 Aligned_cols=52 Identities=29% Similarity=0.334 Sum_probs=41.2
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcE
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l 158 (639)
+.|.. ++++|+.|++||.+.-++-. .++++--|.+ .++.+++||+ |..|+.+
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv 201 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV 201 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence 34433 56899999999999999866 5677666665 2889999999 9999854
No 205
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=75.07 E-value=4.7 Score=42.59 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=34.4
Q ss_pred cccceeecCCCCccccCCeeeEeec--CcceeeEecCCCeeEEEE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKI 269 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~ei~s~~~G~v~~i 269 (639)
+=+.+.+++.||.|++||+|++|-. .....++.||.+|+|..+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 4477888999999999999998854 122457899999999765
No 206
>PRK09294 acyltransferase PapA5; Provisional
Probab=74.84 E-value=62 Score=35.51 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred eeee---chHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhC
Q 006594 439 SDVV---LDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNV 478 (639)
Q Consensus 439 ~evD---vt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~ 478 (639)
..+| ...|.+++++. ++|++.+++-|++.++.+.
T Consensus 211 ~~l~~~~~~~L~~~a~~~------~~t~~~~l~Aa~~~~l~r~ 247 (416)
T PRK09294 211 CRLSKAQTSSLAAFGRRH------RLTVNALVSAAILLAEWQL 247 (416)
T ss_pred EEeCHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHHHh
Confidence 3455 45555555555 6999999999998887754
No 207
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=73.45 E-value=7.6 Score=37.06 Aligned_cols=29 Identities=38% Similarity=0.452 Sum_probs=25.3
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA 128 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~ 128 (639)
+|+--+-++++||+|++||.|+++.-|+.
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 47778999999999999999999987643
No 208
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=73.04 E-value=10 Score=50.53 Aligned_cols=35 Identities=6% Similarity=0.054 Sum_probs=24.4
Q ss_pred EEEecCCCeeecC-----------CeEEEEEcccceeEEecCCceEEE
Q 006594 105 KWRKKEGDKIEIG-----------DILCEIETDKATVEFESLEEGFLA 141 (639)
Q Consensus 105 ~w~v~~Gd~V~~g-----------~~l~~ietdK~~~~i~s~~~G~i~ 141 (639)
..+|.+|+.|++| ++||+- |--+..|-|.++|+|.
T Consensus 2514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--dp~~~pii~e~~G~v~ 2559 (2890)
T PRK09603 2514 EILIDDNSEVSANSVISKPTTNTFKTIATW--DPYNTPIIADFKGKVS 2559 (2890)
T ss_pred cccccccccccCCccccccccccccEEEEe--CCCCCcEEeecceEEE
Confidence 4688899999999 777764 4455556666666653
No 209
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=72.84 E-value=7.9 Score=40.46 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=46.3
Q ss_pred EEEEEEEecCCCeeecCCeE--EEEEc--ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 101 GNIAKWRKKEGDKIEIGDIL--CEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l--~~iet--dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
+-+..+.++.||.|++||+| ..+-. +-...+|.+|.+|+| +.....-. |..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~-v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPY-VEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSE-CTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccc-cCCCCeEEEEe
Confidence 34559999999999999999 54431 223468999999999 66677777 99999999874
No 210
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=71.92 E-value=6.5 Score=46.53 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=35.9
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~ 270 (639)
|.-.+.+|++||+|.+||+|++-.. -...-|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 5556789999999999999996642 256889999999999974
No 211
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.66 E-value=8.3 Score=35.63 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.0
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeE-EecCCceEEEEEE
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKIL 144 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~-i~s~~~G~i~~~~ 144 (639)
.||-++.--+..|++|-+||+++-+.|-|-.+- +++|.+|++.-+.
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 367777888888888888999888888888887 6788888885543
No 212
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=71.19 E-value=4.2 Score=44.09 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=31.5
Q ss_pred EecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 132 FESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 132 i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
|.||.+|+|.++.+..|+. |.+|++|+.+.+.+.
T Consensus 211 IrAP~dG~V~~~~v~~G~~-V~~G~~l~alVp~~~ 244 (352)
T COG1566 211 IRAPVDGYVTNLSVRVGQY-VSAGTPLMALVPLDS 244 (352)
T ss_pred EECCCCceEEeecccCCCe-ecCCCceEEEecccc
Confidence 7999999999999999999 999999999986554
No 213
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=70.05 E-value=3.4 Score=37.86 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.0
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+|+=.++++++||+|++||+|+++.-+
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 456678999999999999999998754
No 214
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=69.21 E-value=3.2 Score=35.61 Aligned_cols=26 Identities=46% Similarity=0.788 Sum_probs=20.1
Q ss_pred cccceeecCCCCccccCCeeeEeecC
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
+--++|++++|+.|++||+|++++-+
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEeC
Confidence 33467999999999999999999853
No 215
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=68.99 E-value=4.5 Score=37.18 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+|+=.++++++||+|++||+|+++.-+
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence 466789999999999999999998754
No 216
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=68.84 E-value=9.4 Score=37.06 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.8
Q ss_pred EEecCCCCccccCCCeEEEEe
Q 006594 268 KILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 268 ~i~~~~G~~~v~vG~~l~~i~ 288 (639)
+.++++||. |..|++|+.+.
T Consensus 105 ~~~Vk~Gd~-Vk~G~~L~~~D 124 (169)
T PRK09439 105 KRIAEEGQR-VKVGDPIIEFD 124 (169)
T ss_pred EEEecCCCE-EeCCCEEEEEc
Confidence 568999999 99999999984
No 217
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=68.18 E-value=10 Score=36.86 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.5
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEccc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDK 127 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK 127 (639)
+|+=.+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4667899999999999999999998653
No 218
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=68.03 E-value=4.4 Score=45.54 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=37.4
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~ 270 (639)
|.=...+|++||+|.+||+|.+-+. ...-+.||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3336789999999999999999887 78889999999999996
No 219
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=65.23 E-value=8.4 Score=44.98 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=38.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeE-------EecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVE-------FESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~-------i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
+|+--+.+|++||+|++||+|+++.-++..-. +--.-......+....+.. +..|+.+..+
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~~vvv~n~~~~~~~~~~~~~~-~~~~~~~~~~ 609 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTTPVVVTNTKDFLDVIPTDKET-VTAGDVLLRL 609 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCeeEEEEEccccccceeeccCCc-ccCCCeeEEe
Confidence 56778999999999999999999986543211 1111111122334445556 7888877654
No 220
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=65.04 E-value=13 Score=38.75 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=45.4
Q ss_pred cccceeecCCCCccccCCee--eEeec--CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 227 GNIAKWRKNEGDKIEVGDVI--CEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l--~~vet--dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
+-+....++.||.|++||+| .++-. +-...++.+|.+|+|.- ....-. |..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~--~~~~~~-v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIF--IRESPY-VEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEES--ECTSSE-CTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEE--eCcccc-cCCCCeEEEEe
Confidence 45678899999999999999 54432 23346899999999854 456666 88999998874
No 221
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=61.42 E-value=14 Score=38.78 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=34.2
Q ss_pred eeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 246 l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
...++. .-..++.++..|.|.++++++|+. |..|++|+.+..
T Consensus 58 ~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~ 99 (372)
T COG0845 58 PGRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDP 99 (372)
T ss_pred eeEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECC
Confidence 334444 333478888999999999999999 999999999965
No 222
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=60.03 E-value=12 Score=37.28 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=46.5
Q ss_pred EecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEE
Q 006594 89 VGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (639)
Q Consensus 89 v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~ 160 (639)
|-+=.+|..+ =|.|.-+.. ++|+.|++||.+.-++= =.++.+--|.+- +.++.++.|+. |..|+.|++
T Consensus 134 v~~v~Vga~~-v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~-V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGALL-VGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQK-VRAGETIGY 202 (202)
T ss_pred EEEEEeccce-eceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCE-EEeeeEEeC
Confidence 3333444433 366644443 69999999999999885 344544444433 33999999999 999999873
No 223
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=59.20 E-value=2.8 Score=39.01 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=21.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA 128 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~ 128 (639)
+|+-.+|++++||+|+.||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 46668999999999999999999976543
No 224
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=57.14 E-value=14 Score=43.19 Aligned_cols=59 Identities=20% Similarity=0.417 Sum_probs=37.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccce---eE------EecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKAT---VE------FESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~---~~------i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
+|+=-+++|++||+|++||+|++++-++.. .+ ++-..+ ...+....+.. ++.|+++..+
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~~vvvtn~~~--~~~~~~~~~~~-v~~~~~~~~~ 625 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTTPVLISNSDD--YTDVLPHATAQ-VSAGEPLLSI 625 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeEEEEEEcccc--ccceeeccCCc-ccCCCeEEEe
Confidence 466678999999999999999999865332 11 222111 12223334455 7888877665
No 225
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=56.91 E-value=19 Score=34.48 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.8
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (639)
+|+--+.++++||+|++||+|+++.-|+.
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 37788899999999999999999988765
No 226
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=55.72 E-value=9.1 Score=35.05 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.8
Q ss_pred ccccceeecCCCCccccCCeeeEeecCc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDK 253 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (639)
+|+--++++++||.|++||+|+++.-++
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3666789999999999999999988654
No 227
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=55.31 E-value=9.3 Score=35.16 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred ccccceeecCCCCccccCCeeeEeecCc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDK 253 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (639)
+|+--++++++||.|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 3667889999999999999999988654
No 228
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=54.40 E-value=7.9 Score=36.02 Aligned_cols=29 Identities=28% Similarity=0.427 Sum_probs=22.5
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (639)
.|.--++++++||+|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 47788999999999999999999986653
No 229
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=54.06 E-value=12 Score=38.99 Aligned_cols=23 Identities=43% Similarity=0.882 Sum_probs=21.0
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
..|++++||.|+.||+|+++|-+
T Consensus 66 ~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 66 IQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEcCCCCEeCCCCEEEEEecc
Confidence 48999999999999999999864
No 230
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.32 E-value=19 Score=33.33 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=34.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceee-EecCCCeeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLE-FECLEEGYLAKI 269 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~e-i~s~~~G~v~~i 269 (639)
||-++-.-+..|+.|.+||+++-+.|-|..+- +++|.+|+|.-+
T Consensus 99 EGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 99 EGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred CcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 56677777788888888888888888888775 678888887544
No 231
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=51.73 E-value=20 Score=42.08 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.1
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKA 128 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~ 128 (639)
+|+=-+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 46667889999999999999999986644
No 232
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=49.32 E-value=26 Score=39.61 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=36.6
Q ss_pred eEeecCcceeeEecCCCeeEEEE------------------------ecCCCCccccCCCeEEEEecC
Q 006594 247 CEIETDKATLEFECLEEGYLAKI------------------------LAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 247 ~~vetdK~~~ei~s~~~G~v~~i------------------------~~~~G~~~v~vG~~l~~i~~~ 290 (639)
..+..-+-+.+|.|+.+|+|..| +++.||. |..|+||+.|-.+
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~-V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQ-VKKGDPLYTIYAE 471 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCE-ecCCCeEEEEECC
Confidence 44555677899999999999988 8899999 9999999999743
No 233
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=49.00 E-value=22 Score=37.03 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=40.1
Q ss_pred EEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 103 IAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 103 v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
|..|. .+|+.|++||.+..++-. .++.+--|. |.+ ++.++.|+. |..||.|+.|
T Consensus 212 i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~-V~~Ge~ig~~ 265 (265)
T PRK03934 212 IQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKS-VKFGESIGEI 265 (265)
T ss_pred eeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCE-EEcchhhccC
Confidence 33443 459999999999999864 455554443 344 778999999 9999999764
No 234
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=46.73 E-value=27 Score=34.40 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=40.7
Q ss_pred ccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEE
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~ 285 (639)
.|.. .+++|+.+++||.+.-++-. .++++--|.+ .++.+++|++ |..|+.|.
T Consensus 131 ~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~-V~~G~tli 182 (189)
T TIGR00164 131 RIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK-VTAGETVL 182 (189)
T ss_pred EEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE-EEeceEEE
Confidence 4433 35899999999999999977 5666666655 3788999999 99999664
No 235
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=44.39 E-value=24 Score=36.60 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=34.7
Q ss_pred ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 108 KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 108 v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
..+|+.|++||.+.-++-. .++.+--|.+-+--...+.+|+. |..|+.|+.+
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~-V~~Ge~ig~~ 258 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQE-VRLGEKIGTR 258 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCE-EEcChhhccc
Confidence 3578888888888888766 56655544432222456777887 8888887653
No 236
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=41.36 E-value=36 Score=38.62 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=33.8
Q ss_pred EEcccceeEEecCCceEEE------------------------EEEecCCCccccCCCcEEEEecC
Q 006594 123 IETDKATVEFESLEEGFLA------------------------KILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 123 ietdK~~~~i~s~~~G~i~------------------------~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
+..-+.+.+|.|+.+|+|. .++++.||. |+.|++|++|..+
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~-V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQ-VKKGDPLYTIYAE 471 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCE-ecCCCeEEEEECC
Confidence 4445678888999999884 578999999 9999999999743
No 237
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=40.99 E-value=46 Score=38.48 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=41.4
Q ss_pred EecCCCeeecCCeEEEEE-cccceeE--EecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 107 RKKEGDKIEIGDILCEIE-TDKATVE--FESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 107 ~v~~Gd~V~~g~~l~~ie-tdK~~~~--i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.+++||.|..||++++|. |.-.... ++....|+|+.+ ..+|+ ..+.++|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEeeCC
Confidence 578899999999999765 4433344 444567999765 56775 58899999998633
No 238
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.87 E-value=27 Score=36.62 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|+.||+|++++-+
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEC
Confidence 49999999999999999999854
No 239
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=40.26 E-value=63 Score=40.94 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=30.3
Q ss_pred EEecCCCeeecCCeEEEEEcc-------cceeEEecCCceEE
Q 006594 106 WRKKEGDKIEIGDILCEIETD-------KATVEFESLEEGFL 140 (639)
Q Consensus 106 w~v~~Gd~V~~g~~l~~ietd-------K~~~~i~s~~~G~i 140 (639)
.+|+.|+.|+.+|+|+|+-+. |+.-.|.|+.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 689999999999999999863 56667999999987
No 240
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=40.23 E-value=32 Score=37.85 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=26.7
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHHhch
Q 006594 603 KMNLTLSADHRVFEGKVGGAFFSALCSNFSDI 634 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P 634 (639)
-+-|+++++|.++||.-+..|++.+.+.+...
T Consensus 146 G~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 146 GLALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred ceeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 47889999999999999999999999988653
No 241
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=40.19 E-value=56 Score=35.60 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=45.9
Q ss_pred EecCCCCCCCceEEEEEE--EecCCCeeecCCeEEEEE-cccceeEE--ecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 89 VGMPALSPTMSQGNIAKW--RKKEGDKIEIGDILCEIE-TDKATVEF--ESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 89 v~~p~~~~~~~eg~v~~w--~v~~Gd~V~~g~~l~~ie-tdK~~~~i--~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
+.+|.|... +.++| .+|+||.|..||++.+|. +.-....| +.-..|.|+. .+.+|+ ..+-+.++.++.
T Consensus 38 ~~~~~ld~~----~~w~f~p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~-~~~~g~--~~~~~~~~~~~~ 110 (369)
T cd01134 38 VNVPALDRD----KKWDFKPLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTY-IAPAGD--YTVDDVILEVEF 110 (369)
T ss_pred CCCCCCCCC----CeeeeEeccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEE-EecCCC--eeEEEEEEEEEe
Confidence 456766543 22222 468999999999999876 33234444 4445899865 456675 477888888875
Q ss_pred CC
Q 006594 164 DA 165 (639)
Q Consensus 164 ~~ 165 (639)
++
T Consensus 111 ~g 112 (369)
T cd01134 111 DG 112 (369)
T ss_pred CC
Confidence 33
No 242
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=39.64 E-value=21 Score=37.30 Aligned_cols=25 Identities=36% Similarity=0.706 Sum_probs=21.4
Q ss_pred ccceeecCCCCccccCCeeeEeecC
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
--..|+++.||.|+.||+|++++.+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 3457999999999999999999954
No 243
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=39.07 E-value=23 Score=39.48 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.3
Q ss_pred EEEEecCCCeeecCCeEEEEE
Q 006594 104 AKWRKKEGDKIEIGDILCEIE 124 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ie 124 (639)
+.++++.||+|++||+|++|=
T Consensus 382 i~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 382 LTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred eEeccCCcCEeCCCCeEEEEE
Confidence 478999999999999998876
No 244
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=38.84 E-value=30 Score=38.34 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=27.7
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998755
No 245
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=38.71 E-value=24 Score=39.49 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=20.9
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEE
Q 006594 98 MSQGNIAKWRKKEGDKIEIGDILCEIE 124 (639)
Q Consensus 98 ~~eg~v~~w~v~~Gd~V~~g~~l~~ie 124 (639)
++-+-=++++++.||.|++||+||.|=
T Consensus 377 id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 377 IDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 333333589999999999999999886
No 246
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=38.70 E-value=31 Score=38.54 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=27.8
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
+-|+++++|.++||.-+..||+.+.++...
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998865
No 247
>PRK04350 thymidine phosphorylase; Provisional
Probab=38.70 E-value=47 Score=37.69 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=35.6
Q ss_pred EeecCcceeeEecCCCeeEEEE------------------------ecCCCCccccCCCeEEEEec
Q 006594 248 EIETDKATLEFECLEEGYLAKI------------------------LAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 248 ~vetdK~~~ei~s~~~G~v~~i------------------------~~~~G~~~v~vG~~l~~i~~ 289 (639)
.+..-+.+.+|.|+.+|+|..| +++.||. |..|+||++|-.
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~-V~~G~~l~~i~a 462 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDK-VKKGDPLYTIHA 462 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCE-ecCCCeEEEEec
Confidence 3555677889999999999988 8899999 999999999974
No 248
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=37.84 E-value=35 Score=35.60 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+--++|++++|+.|+.||+|++++-+
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 33459999999999999999999853
No 249
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.67 E-value=33 Score=36.09 Aligned_cols=23 Identities=26% Similarity=0.526 Sum_probs=20.9
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|+++.|+.|+.||+|++++-+
T Consensus 67 v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 67 VTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEeCCCCEecCCCEEEEEEec
Confidence 49999999999999999999854
No 250
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=37.30 E-value=35 Score=38.30 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=29.8
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHHhchh
Q 006594 603 KMNLTLSADHRVFEGKVGGAFFSALCSNFSDIR 635 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~ 635 (639)
...|.+.+||-+.||.-+..|.+.|-+.|+++.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 567899999999999999999999999998653
No 251
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=37.13 E-value=71 Score=36.36 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=49.4
Q ss_pred EecCCCCCCCceEEEEEEE----ecCCCeeecCCeEEEEE-cccc-eeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 89 VGMPALSPTMSQGNIAKWR----KKEGDKIEIGDILCEIE-TDKA-TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 89 v~~p~~~~~~~eg~v~~w~----v~~Gd~V~~g~~l~~ie-tdK~-~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
+.+|.|.-. .+|. +++||.|..||+|..|. |.-. .+-+..+..|....+...+|+ ..+.++|+.++
T Consensus 105 v~~p~Ldr~------~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~ 176 (588)
T COG1155 105 LNPPALDRK------KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVS 176 (588)
T ss_pred CCCCCCCcc------cccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEe
Confidence 556766543 2564 37999999999999875 3212 122455657777788888995 58999999997
Q ss_pred cCCc
Q 006594 163 EDAD 166 (639)
Q Consensus 163 ~~~~ 166 (639)
++..
T Consensus 177 ~~~g 180 (588)
T COG1155 177 TEGG 180 (588)
T ss_pred cCCC
Confidence 6655
No 252
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=37.10 E-value=33 Score=40.19 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (639)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 47778999999999999999999987664
No 253
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.34 E-value=35 Score=35.80 Aligned_cols=23 Identities=17% Similarity=0.640 Sum_probs=21.2
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|++||+|++++-+
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEc
Confidence 59999999999999999999854
No 254
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=36.21 E-value=46 Score=37.76 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=35.3
Q ss_pred eecCcceeeEecCCCeeEEEE------------------------ecCCCCccccCCCeEEEEecC
Q 006594 249 IETDKATLEFECLEEGYLAKI------------------------LAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i------------------------~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+-.-+.+.+|.|+.+|+|..| +++.||. |..|+||++|-.+
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~-V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEK-VKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCE-eCCCCeEEEEECC
Confidence 455677889999999999988 8899999 9999999999743
No 255
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=36.06 E-value=45 Score=37.24 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=33.7
Q ss_pred ecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEec
Q 006594 250 ETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 250 etdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~ 289 (639)
-.-+-+.+|.|+.+|+|..| +++.||. |..|++|++|-.
T Consensus 334 ~~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~-V~~Gd~l~~i~~ 403 (437)
T TIGR02643 334 ATAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDR-VEKGEPLAVVHA 403 (437)
T ss_pred CCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCE-eCCCCeEEEEEC
Confidence 34566888999999999988 7899999 999999999974
No 256
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=35.89 E-value=36 Score=35.90 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.1
Q ss_pred EEEEecCCCeeecCCeEEEEEc
Q 006594 104 AKWRKKEGDKIEIGDILCEIET 125 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~iet 125 (639)
++|+++.|+.|++|++|++++-
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEEe
Confidence 4999999999999999999884
No 257
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=35.78 E-value=32 Score=35.25 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEE
Q 006594 111 GDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (639)
Q Consensus 111 Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~ 160 (639)
|+.|++||.+.-++-. .++.+--|.+-+--+..+.+|+. |..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~k-V~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQE-VKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCE-EEcChhhcc
Confidence 9999999999999864 56655555432222678899999 999999964
No 258
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=35.55 E-value=38 Score=37.72 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=27.9
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998865
No 259
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=35.27 E-value=41 Score=33.41 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=41.0
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEE
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~ 285 (639)
+.|+-+.. ++|+.|++||.+..++- -.++.+--|.+- +.++.++.|+. |..|+.|+
T Consensus 145 ~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~-V~~Ge~i~ 201 (202)
T PF02666_consen 145 GSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQK-VRAGETIG 201 (202)
T ss_pred ceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCE-EEeeeEEe
Confidence 55555554 69999999999999886 444444433332 23889999999 99999886
No 260
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=35.07 E-value=29 Score=38.71 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=22.8
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEccc
Q 006594 98 MSQGNIAKWRKKEGDKIEIGDILCEIETDK 127 (639)
Q Consensus 98 ~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK 127 (639)
|+-+-=+.++++.||.|++||+||+|=+|+
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 333333589999999999999999887654
No 261
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=34.64 E-value=32 Score=38.14 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=22.3
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEc
Q 006594 98 MSQGNIAKWRKKEGDKIEIGDILCEIET 125 (639)
Q Consensus 98 ~~eg~v~~w~v~~Gd~V~~g~~l~~iet 125 (639)
++-+-=+.++++.||+|++||+||.|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 3433335899999999999999999864
No 262
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=34.37 E-value=40 Score=35.16 Aligned_cols=23 Identities=39% Similarity=0.855 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|+.|++|++++-+
T Consensus 59 v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 59 VEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEEEeCCCCEecCCCEEEEEEEc
Confidence 48999999999999999999854
No 263
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=34.20 E-value=39 Score=35.36 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.++ +|++++|+.|++||+|++++-+
T Consensus 56 ~~v-~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 56 LEV-DLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred cEE-EEEcCCCCEecCCCEEEEEEEc
Confidence 444 8999999999999999999854
No 264
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.12 E-value=39 Score=35.74 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|+++.||.|++|++|++++-+
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEEeC
Confidence 49999999999999999999853
No 265
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.00 E-value=39 Score=35.66 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|++||+|++++-+
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEEEc
Confidence 37999999999999999999854
No 266
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=33.71 E-value=47 Score=36.82 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=35.1
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecC
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+-..+-..+|.|+.+|+|..| +++.|+. |..|+||++|-..
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~-V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDR-VKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCE-eCCCCeEEEEeCC
Confidence 456777889999999999987 7889999 9999999999743
No 267
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=33.67 E-value=3.7e+02 Score=29.91 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=41.9
Q ss_pred CcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecC-------------CCeEEeeeecCCcCCHHHH
Q 006594 460 KVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATE-------------KGLMTPIVRNADQKSISAI 526 (639)
Q Consensus 460 kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~-------------~gl~~pvI~~a~~~sl~ei 526 (639)
+.|++++++.|+++--..+--.+ + -.++.+.++++|+.- .+....+|+..+..||...
T Consensus 238 gaTiNDiilaa~~~fr~~y~~~~-----~----k~~~~lsi~~~VDlRkyl~sk~~sI~Nls~~~~i~I~~dd~~~fe~t 308 (439)
T COG4908 238 GATINDIILAALLKFRLLYNTTH-----E----KANNYLSIDMPVDLRKYLPSKEESISNLSSYLTIVINVDDVTDFEKT 308 (439)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhc-----h----hhcCeeeeceeeehhhhccccccceeccceeEEEEEeccccccHHHH
Confidence 78999999999954332221110 0 123445555555421 1356678888888888888
Q ss_pred HHHHHHHHHH
Q 006594 527 SMEVKELAEK 536 (639)
Q Consensus 527 ~~~~~~l~~~ 536 (639)
.+.+++....
T Consensus 309 ~~~vk~~~~~ 318 (439)
T COG4908 309 LEKVKGIMNP 318 (439)
T ss_pred HHHHHhhcCc
Confidence 8887776553
No 268
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=33.53 E-value=88 Score=26.65 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=33.6
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 98 MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 98 ~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
+.+|+|+.+.-.. ...-...|+...-...+ +.. +..+.++.||. |+.|+.|+.+..
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~---y~~-l~~~~v~~G~~-V~~G~~IG~~g~ 74 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITV---YGH-LDSVSVKVGDR-VKAGQVIGTVGN 74 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEE---EEE-ESEESS-TTSE-E-TTCEEEEEBS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEE---Eec-cccccceeccc-ccCCCEEEecCC
Confidence 4568887777644 23344455553332222 222 56667899999 999999999864
No 269
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=33.44 E-value=42 Score=35.76 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.6
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.++ +|+++.|+.|++|++|++++-.
T Consensus 78 ~~v-~~~~~dG~~v~~G~~i~~v~G~ 102 (308)
T PLN02716 78 LKV-EWAAIDGDFVHKGLKFGKVTGP 102 (308)
T ss_pred eEE-EEEeCCCCEecCCCEEEEEEEC
Confidence 444 8999999999999999999853
No 270
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=33.20 E-value=41 Score=35.63 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|++||+|++++-+
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 49999999999999999999854
No 271
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=32.76 E-value=43 Score=39.27 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=25.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (639)
+|+--++++++||+|++||+|+++.-++.
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i 586 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPAI 586 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 36677999999999999999999987654
No 272
>PRK04350 thymidine phosphorylase; Provisional
Probab=32.60 E-value=37 Score=38.51 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=22.3
Q ss_pred CceEEEEEEEecCCCeeecCCeEEEEEc
Q 006594 98 MSQGNIAKWRKKEGDKIEIGDILCEIET 125 (639)
Q Consensus 98 ~~eg~v~~w~v~~Gd~V~~g~~l~~iet 125 (639)
++-+-=+.++++.||+|++||+|+.|=+
T Consensus 435 ~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 435 KDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCcccCeEEeccCCCEecCCCeEEEEec
Confidence 4444445899999999999999999863
No 273
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=32.33 E-value=70 Score=33.31 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=32.7
Q ss_pred ecCCCeeec-CCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEE
Q 006594 108 KKEGDKIEI-GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160 (639)
Q Consensus 108 v~~Gd~V~~-g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~ 160 (639)
++.|+.+.+ |++|++. . .-+|.+|++|.+ ++-.... +.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~-~---~~~~~ap~~g~v---l~~p~~~-~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHD-G---GEPIRTPYDDCV---LIMPSLR-PLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEe-C---CeEEeCCCCCEE---EEccCCC-CCCCceeee
Confidence 456888888 9999883 2 378889999965 4566666 678887664
No 274
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.18 E-value=45 Score=35.08 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|+++.|+.|++||+|++++-.
T Consensus 72 ~~~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 72 MRRHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEC
Confidence 49999999999999999999853
No 275
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=32.07 E-value=1.5e+02 Score=22.69 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=35.1
Q ss_pred CCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccc
Q 006594 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEAN 482 (639)
Q Consensus 430 ~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln 482 (639)
+..++|++..+-++-+.++.+.+.+ +-|++.-+++++..+|.+...++
T Consensus 2 r~~~~f~lRlP~~l~~~lk~~A~~~-----gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKERAEEN-----GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHHHHHHT-----TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHhccccCC
Confidence 4678999888877655555444442 57999999999999999876554
No 276
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.06 E-value=44 Score=34.98 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=20.9
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|++||+|++++-+
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 49999999999999999999854
No 277
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=31.99 E-value=38 Score=28.98 Aligned_cols=25 Identities=16% Similarity=0.431 Sum_probs=18.2
Q ss_pred EEEEEEecCCCeeecCCeEEEEEcc
Q 006594 102 NIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 102 ~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
-+....|++||.|++||.|+.+...
T Consensus 51 ~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 51 HLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EESEESS-TTSEE-TTCEEEEEBSC
T ss_pred ccccccceecccccCCCEEEecCCC
Confidence 3445569999999999999998743
No 278
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.81 E-value=45 Score=35.22 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++|++++|+.|++||+|++++-+
T Consensus 78 v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 78 VLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 48999999999999999999854
No 279
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=31.27 E-value=38 Score=38.46 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCceEEEEEEEecCCCeeecCCeEEEEEc
Q 006594 97 TMSQGNIAKWRKKEGDKIEIGDILCEIET 125 (639)
Q Consensus 97 ~~~eg~v~~w~v~~Gd~V~~g~~l~~iet 125 (639)
-++-+-=+.++++.||.|++||+|+.|=+
T Consensus 443 ~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 443 PNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred CcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 34444445899999999999999998863
No 280
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=31.03 E-value=70 Score=37.68 Aligned_cols=42 Identities=36% Similarity=0.436 Sum_probs=30.8
Q ss_pred CCeeeEeecCcceeeEecCCCeeEEEE-----------------------------------ecCCCCccccCCCeEEEE
Q 006594 243 GDVICEIETDKATLEFECLEEGYLAKI-----------------------------------LAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 243 gd~l~~vetdK~~~ei~s~~~G~v~~i-----------------------------------~~~~G~~~v~vG~~l~~i 287 (639)
||-++..=+| .+|.||.+|+|..+ ++++||. |+.||+|+.+
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~-V~~G~~l~~~ 601 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQ-VSAGQPILEM 601 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCE-EcCCCEEEEE
Confidence 5556655554 36777777777665 6889998 9999998888
Q ss_pred e
Q 006594 288 V 288 (639)
Q Consensus 288 ~ 288 (639)
.
T Consensus 602 D 602 (648)
T PRK10255 602 D 602 (648)
T ss_pred c
Confidence 4
No 281
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=30.93 E-value=48 Score=37.00 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=27.6
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
+-|+++++|.++||.-+..|++.+.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 678999999999999999999999998754
No 282
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=30.65 E-value=49 Score=34.73 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.++ +|+++.|+.|+.|++|++++-+
T Consensus 60 ~~~-~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 60 ASI-DYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred CEE-EEEeCCCCEeCCCCEEEEEEec
Confidence 455 9999999999999999999854
No 283
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=30.51 E-value=36 Score=35.55 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=21.8
Q ss_pred cccceeecCCCCccccCCeeeEeecC
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
+--++|++++|+.|+.||+|++++-+
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 44578999999999999999999843
No 284
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.19 E-value=50 Score=34.69 Aligned_cols=25 Identities=20% Similarity=0.652 Sum_probs=21.5
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.++ +|++++|+.|++|++|++++-+
T Consensus 58 ~~v-~~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 58 VKV-EVRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred CEE-EEEcCCCCEecCCCEEEEEEEC
Confidence 444 8999999999999999999854
No 285
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=30.13 E-value=57 Score=36.57 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=34.9
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecC
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+-..+-..+|.|+.+|+|..| +++.|+. |..|++|+.|-..
T Consensus 334 ~~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~-V~~Gd~l~~i~~~ 405 (440)
T PRK05820 334 LPTAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDR-VDAGEPLATLHAD 405 (440)
T ss_pred CCCCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCE-ECCCCeEEEEeCC
Confidence 335677889999999999887 7899999 9999999999743
No 286
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.20 E-value=39 Score=35.50 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=19.8
Q ss_pred ceeecCCCCccccCCeeeEeec
Q 006594 230 AKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (639)
++|++++|+.|+.||+|++++-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6899999999999999999984
No 287
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=29.01 E-value=56 Score=34.07 Aligned_cols=22 Identities=36% Similarity=0.889 Sum_probs=20.3
Q ss_pred EEEecCCCeeecCCeEEEEEcc
Q 006594 105 KWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+|++++|+.|+.|++|++++-.
T Consensus 57 ~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 57 EWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEeCCCCEecCCCEEEEEEEc
Confidence 8999999999999999999853
No 288
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=28.75 E-value=53 Score=34.67 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=36.0
Q ss_pred CCeeecCCeEEEEEcccceeEEecCCceEEE-EEEecCCCccccCCCcEEEEe
Q 006594 111 GDKIEIGDILCEIETDKATVEFESLEEGFLA-KILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 111 Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~-~~~v~~g~~~v~~G~~l~~i~ 162 (639)
|..|++||.+..++=. .++.+--+.+ .+. ...+.+|+. |..|+.|+.+.
T Consensus 237 ~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~k-V~~Ge~ig~~~ 286 (288)
T PRK00044 237 AITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSV-VRMGQPLAHIT 286 (288)
T ss_pred CCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCE-EEcChhhcCcc
Confidence 7799999999998864 4555544443 332 345789999 99999998764
No 289
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=28.72 E-value=51 Score=36.85 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=35.0
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecC
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+-.-+...+|.|+.+|+|..| +++.||. |..|++|++|-.+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~-V~~g~~l~~i~~~ 400 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDS-VKKGESLATIYAN 400 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCE-eCCCCeEEEEeCC
Confidence 445667889999999999988 7899999 9999999999743
No 290
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=27.25 E-value=1.2e+02 Score=35.39 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=41.8
Q ss_pred EecCCCeeecCCeEEEEEcc-cceeE--EecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 107 RKKEGDKIEIGDILCEIETD-KATVE--FESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 107 ~v~~Gd~V~~g~~l~~ietd-K~~~~--i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
.+|+||.|..||+|.+|.-. -...- ++.-..|+++.| +.+|+ ..+.++|+.+++.+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~--ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD--YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEEccCC
Confidence 47889999999999997643 22333 445568999555 66775 588999999987554
No 291
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=26.69 E-value=38 Score=34.37 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=25.5
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeE
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVE 131 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~ 131 (639)
.|++.+|..+++-++.|.||.||.+++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 499999999999999999999999887
No 292
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.52 E-value=47 Score=34.97 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=20.6
Q ss_pred cceeecCCCCccccCCeeeEeecC
Q 006594 229 IAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
-++|+++.|+.|+.||+|++++.+
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEec
Confidence 468999999999999999999843
No 293
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=25.69 E-value=83 Score=32.76 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=41.1
Q ss_pred cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
..|..|.. +|+.|++||.+..++-. .++.+--|.+ .+ ++.++.|+. |..|+.|+.|
T Consensus 210 r~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~~-V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGKS-VKFGESIGEI 265 (265)
T ss_pred Cceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCCE-EEcchhhccC
Confidence 45566654 49999999999998884 5555444433 33 677999999 9999998754
No 294
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=25.50 E-value=50 Score=35.01 Aligned_cols=23 Identities=22% Similarity=0.578 Sum_probs=19.9
Q ss_pred ceeecCCCCccccCCeeeEeecC
Q 006594 230 AKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
++|++++|+.|+.||+|++++.+
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEEC
Confidence 68999999999999999998843
No 295
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=25.09 E-value=83 Score=42.55 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.3
Q ss_pred ceeecCCCCccccCCeeeEee
Q 006594 230 AKWRKNEGDKIEVGDVICEIE 250 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~ve 250 (639)
..++|++|+.|++|++||+..
T Consensus 2422 a~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2422 AKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred cEEEecCCCEecCCCEEEEEc
Confidence 357899999999999999864
No 296
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.00 E-value=51 Score=34.60 Aligned_cols=23 Identities=17% Similarity=0.641 Sum_probs=20.2
Q ss_pred ceeecCCCCccccCCeeeEeecC
Q 006594 230 AKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
++|+++.|+.|++||+|++++.+
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEEc
Confidence 78999999999999999999843
No 297
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=24.95 E-value=52 Score=34.69 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=20.2
Q ss_pred ccceeecCCCCccccCCeeeEeec
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
--++|+++.|+.|++||+|++++.
T Consensus 61 ~~v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 61 LTIDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 346899999999999999998883
No 298
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.62 E-value=53 Score=34.72 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.1
Q ss_pred cceeecCCCCccccCCeeeEeecC
Q 006594 229 IAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
-++|++++|+.|++||+|++++.+
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEc
Confidence 346999999999999999998843
No 299
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.53 E-value=53 Score=34.35 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.9
Q ss_pred ccceeecCCCCccccCCeeeEeecC
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
--++|++++|+.|+.||+|++++.+
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEEEc
Confidence 3457888999999999988888843
No 300
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.45 E-value=54 Score=34.72 Aligned_cols=23 Identities=35% Similarity=0.852 Sum_probs=19.9
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|+++.|+.|++||+|++++.
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEe
Confidence 46899999999999999998883
No 301
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=24.27 E-value=41 Score=34.14 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=25.4
Q ss_pred eeecCCCCccccCCeeeEeecCcceee
Q 006594 231 KWRKNEGDKIEVGDVICEIETDKATLE 257 (639)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~e 257 (639)
.|++.+|..|++=++.|.||.||++++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 499999999999999999999999886
No 302
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=23.95 E-value=1.3e+02 Score=34.90 Aligned_cols=55 Identities=35% Similarity=0.437 Sum_probs=40.6
Q ss_pred ecCCCeeecCCeEEEEE-cccceeE--EecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 108 KKEGDKIEIGDILCEIE-TDKATVE--FESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 108 v~~Gd~V~~g~~l~~ie-tdK~~~~--i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
+++||.|..||+++++. +.-.... +..-..|+|+.+ ..+|+ ..+-++|+.++..+
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~--~~~~~~v~~~~~~g 178 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD--YTVEDTIAVVDTDG 178 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC--ceeeeeEEEEecCC
Confidence 78899999999999884 4433333 345578998665 56775 58899999997643
No 303
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=23.59 E-value=1.5e+02 Score=32.50 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=39.6
Q ss_pred ecCCCCccccCCeeeEee-cCcceeeE--ecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 233 RKNEGDKIEVGDVICEIE-TDKATLEF--ECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 233 ~v~~Gd~V~~gd~l~~ve-tdK~~~ei--~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.+++||.|..||++.+|. |.-.+-.| +....|.|..+ +++|+ ..+-+.++.+..++
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~--~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD--YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC--eeEEEEEEEEEeCC
Confidence 469999999999999876 33344444 44568998775 56776 45667888876543
No 304
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=23.39 E-value=91 Score=34.29 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=0.0
Q ss_pred EecCCCeeecCCeEEEEEcccceeEEecCCceEEE
Q 006594 107 RKKEGDKIEIGDILCEIETDKATVEFESLEEGFLA 141 (639)
Q Consensus 107 ~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~ 141 (639)
.|++||.|++||+|..=.-..-.-+..-+.+|.|.
T Consensus 211 ~Vk~Gd~VkkGdvLISG~i~~~~~~~~v~A~G~V~ 245 (385)
T PF06898_consen 211 LVKVGDTVKKGDVLISGVIEIEGDEQEVHADGDVK 245 (385)
T ss_pred EecCCCEECCCCEEEeeeEcCCCCceEECCcEEEE
No 305
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=23.33 E-value=1.5e+02 Score=34.43 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=41.8
Q ss_pred ecCCCCccccCCeeeEee-cCcceee--EecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 233 RKNEGDKIEVGDVICEIE-TDKATLE--FECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 233 ~v~~Gd~V~~gd~l~~ve-tdK~~~e--i~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.+++||.|..||++.+|. |.-...- ++...+|+|..| +++|+ ..+.++|+.+..++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEeeCC
Confidence 588999999999999754 4433333 455568999876 67886 67889999997543
No 306
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.31 E-value=57 Score=34.01 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=20.4
Q ss_pred ccceeecCCCCccccCCeeeEeecC
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
--++|++++|+.|+.|++|++++.+
T Consensus 57 ~~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 57 IEVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEEc
Confidence 3457999999999999999998843
No 307
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=23.19 E-value=58 Score=34.70 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.4
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|+++.|+.|++||+|++++.
T Consensus 79 ~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 79 KVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEEEEeCCCCEecCCCEEEEEEE
Confidence 45799999999999999998883
No 308
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.10 E-value=59 Score=34.37 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=19.6
Q ss_pred cceeecCCCCccccCCeeeEeecC
Q 006594 229 IAKWRKNEGDKIEVGDVICEIETD 252 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (639)
-++|++++|+.|++||+|++++.+
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEEEC
Confidence 457888999999999988888843
No 309
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=22.91 E-value=1.5e+02 Score=33.79 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=85.2
Q ss_pred CCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCccccccccc
Q 006594 95 SPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT 174 (639)
Q Consensus 95 ~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~~~~~~~~ 174 (639)
.++|..+... =+|++|+.==.|++| +|+-||+++.|.=..+| +..|+.-+..|.+|.. +-...-...- .
T Consensus 15 a~gm~~~~my-~~v~Vg~~~L~gEiI-~i~gd~a~iQVyE~T~G------i~~Ge~V~~Tg~pLsv-ELGPGll~~I--y 83 (588)
T COG1155 15 AEGMEGAKMY-DVVKVGEMGLIGEII-RIEGNRATIQVYEDTAG------IRPGEKVENTGRPLSV-ELGPGLLKSI--Y 83 (588)
T ss_pred EecCcCCceE-EEEEEcCCceeEEEE-EEeCCeEEEEEEeecCC------CCCCCeeecCCCceEE-EeCccHHhhh--h
Confidence 4556655553 346677665566654 58889999998877777 3567763445555543 1111000000 0
Q ss_pred ccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceee----cCCCCccccCCeeeEee
Q 006594 175 IAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWR----KNEGDKIEVGDVICEIE 250 (639)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~----v~~Gd~V~~gd~l~~ve 250 (639)
.+. ..|=..-...+ ..-.+.+ +..|.|... .+|. +++||.|..||+|..|.
T Consensus 84 --DGi-----------QrPL~~i~e~s----g~Fi~RG--v~~p~Ldr~------~kW~F~P~~~~Gd~V~~GdvlGtV~ 138 (588)
T COG1155 84 --DGI-----------QRPLDVIKETS----GDFIARG--LNPPALDRK------KKWDFVPAVKKGDTVYPGDVLGTVQ 138 (588)
T ss_pred --hhc-----------cChHHHHHHHh----hhHhhcC--CCCCCCCcc------cccccccccccCCEeccCceEEEec
Confidence 000 00000000000 0001111 223444432 1332 38999999999999774
Q ss_pred -cCcc-eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 251 -TDKA-TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 251 -tdK~-~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
|.-. .+=++.+.+|.+..+.+.+|+ ..+.+.|+.+..+..
T Consensus 139 Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~~~~g 180 (588)
T COG1155 139 ETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVSTEGG 180 (588)
T ss_pred cCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEecCCC
Confidence 4423 122555667777788888896 688889999865443
No 310
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=22.80 E-value=1.3e+02 Score=33.31 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=35.8
Q ss_pred EeecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecC
Q 006594 248 EIETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 248 ~vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~ 290 (639)
.+..-|-..+|.|..+|+|..+ +.+.|+. |+.|++|+.|-.+
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~-Vk~Gd~l~tiya~ 401 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEK-VKKGDPLATIYAE 401 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCe-eccCCeEEEEecC
Confidence 5556677889999999999887 7788999 9999999999763
No 311
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=22.55 E-value=81 Score=34.18 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.5
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.++| |.+++|+.|.+|++|++||-.
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 4565 899999999999999999854
No 312
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.24 E-value=63 Score=33.86 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=18.8
Q ss_pred ceeecCCCCccccCCeeeEeec
Q 006594 230 AKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (639)
++|++++|+.|+.||+|++++.
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6889999999998888888883
No 313
>PHA01513 mnt Mnt
Probab=22.03 E-value=1.4e+02 Score=25.42 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=34.2
Q ss_pred CCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhC
Q 006594 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNV 478 (639)
Q Consensus 430 ~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~ 478 (639)
+.+|+|++-.+-++-.-++.+.+.+ +.|++..+++++..+|.+-
T Consensus 3 r~~~qf~LRLP~eLk~rL~~aA~~n-----GRSmNaeIv~~Le~al~~~ 46 (82)
T PHA01513 3 RDDPQFNLRLPYELKEKLKQRAKAN-----GRSLNAELVQIVQDALSKP 46 (82)
T ss_pred CCCcceeeeCCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCC
Confidence 5788999888877766555555543 7899999999999998753
No 314
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.89 E-value=64 Score=33.95 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.5
Q ss_pred ccceeecCCCCccccCCeeeEeec
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
--++|+++.|+.|+.||+|++++.
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEE
Confidence 346899999999999999999884
No 315
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=21.64 E-value=66 Score=33.80 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=19.8
Q ss_pred ccceeecCCCCccccCCeeeEeec
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
--++|+++.|+.|+.||+|++++.
T Consensus 60 ~~~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 60 ASIDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred CEEEEEeCCCCEeCCCCEEEEEEe
Confidence 456788999999999999988883
No 316
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.32 E-value=91 Score=32.99 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEEe--cCCCeeecCCeEEEEEcc
Q 006594 103 IAKWRK--KEGDKIEIGDILCEIETD 126 (639)
Q Consensus 103 v~~w~v--~~Gd~V~~g~~l~~ietd 126 (639)
..+|++ +.|+.|++|++|++++-+
T Consensus 72 ~~~~~~~~~dG~~v~~G~~i~~v~G~ 97 (290)
T PRK06559 72 TFQNPHQFKDGDRLTSGDLVLEIIGS 97 (290)
T ss_pred EEEEeecCCCCCEecCCCEEEEEEEC
Confidence 458888 999999999999999854
No 317
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=21.28 E-value=1e+02 Score=39.43 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.0
Q ss_pred EEecCCCeeecCCeEEEEEc--------ccceeEEecCCceEE
Q 006594 106 WRKKEGDKIEIGDILCEIET--------DKATVEFESLEEGFL 140 (639)
Q Consensus 106 w~v~~Gd~V~~g~~l~~iet--------dK~~~~i~s~~~G~i 140 (639)
.+|+.||.|++||+|||+.. +|+...|-|..+|.|
T Consensus 406 l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 406 LLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 68999999999999999974 455678999999986
No 318
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=21.24 E-value=8.2e+02 Score=31.00 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=25.2
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFS 632 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le 632 (639)
--+-+++||-++||+-.+-|+++|.++..
T Consensus 133 ~~l~~~~HHii~DG~S~~~l~~el~~~Y~ 161 (1296)
T PRK10252 133 WYWYQRYHHLLVDGFSFPAITRRIAAIYC 161 (1296)
T ss_pred EEEEEecCceeEccccHHHHHHHHHHHHH
Confidence 35678999999999999999999987764
No 319
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.84 E-value=68 Score=35.56 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=29.6
Q ss_pred EEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 121 ~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
..|+..+--+.+. |..-.|+|..|+. |..|++|+.+...
T Consensus 355 vIldhG~gy~sly----g~~~~i~v~~G~~-V~AGepIa~~G~s 393 (420)
T COG4942 355 VILDHGGGYHSLY----GGNQSILVNPGQF-VKAGEPIALVGSS 393 (420)
T ss_pred EEEEcCCccEEEe----cccceeeecCCCE-eecCCchhhccCC
Confidence 3466666665554 3356899999999 9999999999766
No 320
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.76 E-value=70 Score=33.61 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=19.2
Q ss_pred ccceeecCCCCccccCCeeeEeec
Q 006594 228 NIAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
--++|++++|+.|+.|++|++++.
T Consensus 58 ~~v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 58 VKVEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred CEEEEEcCCCCEecCCCEEEEEEE
Confidence 345788888888888888888883
No 321
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.17 E-value=72 Score=33.25 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=18.2
Q ss_pred ceeecCCCCccccCCeeeEeec
Q 006594 230 AKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (639)
++|++++|+.|+.||+|++++-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 3688889999888888888883
Done!