Query 006594
Match_columns 639
No_of_seqs 406 out of 3260
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 03:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 3.6E-88 1.2E-92 737.7 2.0 410 213-639 3-426 (428)
2 1dpb_A Dihydrolipoyl-transacet 100.0 8.1E-58 2.8E-62 463.9 26.8 227 408-639 14-243 (243)
3 3l60_A Branched-chain alpha-ke 100.0 1.3E-57 4.4E-62 462.7 24.9 220 413-638 18-239 (250)
4 3mae_A 2-oxoisovalerate dehydr 100.0 4.5E-58 1.5E-62 467.6 21.3 225 407-638 16-244 (256)
5 1scz_A E2, dihydrolipoamide su 100.0 5.9E-58 2E-62 462.1 20.6 224 409-639 4-231 (233)
6 2ii3_A Lipoamide acyltransfera 100.0 4.3E-57 1.5E-61 462.6 23.6 227 408-639 30-259 (262)
7 3rqc_A Probable lipoamide acyl 100.0 1.6E-56 5.3E-61 449.2 23.2 217 409-639 6-222 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 9.1E-57 3.1E-61 455.5 15.2 227 408-639 11-239 (239)
9 1q23_A Chloramphenicol acetylt 100.0 2E-42 6.8E-47 345.7 24.6 194 417-635 17-216 (219)
10 2xt6_A 2-oxoglutarate decarbox 100.0 2.1E-43 7.1E-48 421.7 16.4 213 424-637 1-225 (1113)
11 3cla_A Type III chloramphenico 100.0 9.3E-42 3.2E-46 339.6 24.6 192 418-633 13-210 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 1.7E-40 5.9E-45 330.9 22.5 190 418-631 15-216 (217)
13 1zy8_K Pyruvate dehydrogenase 99.9 4.2E-28 1.4E-32 242.8 3.5 158 212-369 3-169 (229)
14 1y8o_B Dihydrolipoyllysine-res 99.8 8.1E-19 2.8E-23 159.8 11.4 93 75-168 15-109 (128)
15 2dne_A Dihydrolipoyllysine-res 99.8 7.3E-19 2.5E-23 156.1 8.7 86 82-168 3-89 (108)
16 3crk_C Dihydrolipoyllysine-res 99.7 9E-18 3.1E-22 143.3 11.0 83 83-166 2-85 (87)
17 2dnc_A Pyruvate dehydrogenase 99.7 9.3E-18 3.2E-22 146.4 10.8 83 84-167 5-88 (98)
18 1k8m_A E2 component of branche 99.7 3.1E-17 1.1E-21 141.7 10.1 81 84-165 2-82 (93)
19 1y8o_B Dihydrolipoyllysine-res 99.7 8.2E-17 2.8E-21 146.6 9.8 86 208-294 23-109 (128)
20 2dne_A Dihydrolipoyllysine-res 99.7 5.2E-17 1.8E-21 144.1 7.7 86 208-294 3-89 (108)
21 2dnc_A Pyruvate dehydrogenase 99.7 1.7E-16 5.8E-21 138.4 10.3 85 209-294 4-89 (98)
22 3crk_C Dihydrolipoyllysine-res 99.7 1.9E-16 6.6E-21 134.9 9.8 82 210-292 3-85 (87)
23 1ghj_A E2, E2, the dihydrolipo 99.6 2.4E-16 8.1E-21 131.8 8.0 76 87-163 2-77 (79)
24 3dva_I Dihydrolipoyllysine-res 99.6 1.5E-17 5.3E-22 181.2 0.0 81 86-167 2-82 (428)
25 1zy8_K Pyruvate dehydrogenase 99.6 4.3E-17 1.5E-21 163.1 0.0 81 85-165 2-82 (229)
26 1qjo_A Dihydrolipoamide acetyl 99.6 1.4E-15 4.9E-20 127.2 8.8 76 86-164 2-77 (80)
27 1k8m_A E2 component of branche 99.6 1.7E-15 5.7E-20 130.8 8.8 78 212-290 4-81 (93)
28 2l5t_A Lipoamide acyltransfera 99.6 1.4E-15 4.9E-20 126.3 7.8 75 87-162 2-76 (77)
29 1pmr_A Dihydrolipoyl succinylt 99.6 4.6E-17 1.6E-21 136.6 -1.7 76 87-163 3-78 (80)
30 1ghj_A E2, E2, the dihydrolipo 99.6 4.1E-15 1.4E-19 124.2 9.0 76 213-289 2-77 (79)
31 1pmr_A Dihydrolipoyl succinylt 99.5 1.8E-15 6.1E-20 126.8 3.1 76 213-289 3-78 (80)
32 1iyu_A E2P, dihydrolipoamide a 99.5 1.5E-14 5.3E-19 120.7 8.8 75 87-165 2-76 (79)
33 1gjx_A Pyruvate dehydrogenase; 99.5 5.1E-15 1.7E-19 124.2 4.1 76 86-163 2-77 (81)
34 2l5t_A Lipoamide acyltransfera 99.5 3.6E-14 1.2E-18 117.8 7.9 75 213-288 2-76 (77)
35 1qjo_A Dihydrolipoamide acetyl 99.5 5.3E-14 1.8E-18 117.6 8.1 75 213-290 3-77 (80)
36 1iyu_A E2P, dihydrolipoamide a 99.4 2E-13 7E-18 113.8 9.0 74 213-290 2-75 (79)
37 1gjx_A Pyruvate dehydrogenase; 99.4 1.2E-13 4.2E-18 115.7 5.0 76 212-289 2-77 (81)
38 2k7v_A Dihydrolipoyllysine-res 99.4 3.1E-14 1.1E-18 120.7 0.3 72 87-165 3-74 (85)
39 2k7v_A Dihydrolipoyllysine-res 99.4 5.8E-13 2E-17 112.8 6.5 72 213-291 3-74 (85)
40 2kcc_A Acetyl-COA carboxylase 99.3 2.8E-12 9.7E-17 108.3 6.3 66 99-166 12-77 (84)
41 2jku_A Propionyl-COA carboxyla 99.3 9.9E-13 3.4E-17 113.6 2.8 80 82-162 11-94 (94)
42 1z6h_A Biotin/lipoyl attachmen 99.3 6.9E-12 2.4E-16 102.3 7.7 64 99-163 6-69 (72)
43 2dn8_A Acetyl-COA carboxylase 99.2 1.7E-11 5.9E-16 106.9 8.1 65 99-165 24-88 (100)
44 2d5d_A Methylmalonyl-COA decar 99.2 7.4E-11 2.5E-15 96.5 8.1 63 99-162 12-74 (74)
45 2kcc_A Acetyl-COA carboxylase 99.1 4.6E-11 1.6E-15 100.8 6.7 63 226-290 13-75 (84)
46 1dcz_A Transcarboxylase 1.3S s 99.1 8.1E-11 2.8E-15 97.2 8.0 63 99-162 15-77 (77)
47 2ejm_A Methylcrotonoyl-COA car 99.1 8.1E-11 2.8E-15 102.5 7.9 67 99-166 21-87 (99)
48 1bdo_A Acetyl-COA carboxylase; 99.1 6.3E-11 2.2E-15 98.8 6.2 57 105-162 24-80 (80)
49 1z6h_A Biotin/lipoyl attachmen 99.1 8.9E-11 3.1E-15 95.6 6.8 63 226-289 7-69 (72)
50 3va7_A KLLA0E08119P; carboxyla 99.1 4.2E-12 1.4E-16 154.0 -3.9 165 105-288 1067-1236(1236)
51 1bdo_A Acetyl-COA carboxylase; 99.1 1.8E-10 6.2E-15 96.0 7.0 73 214-287 6-79 (80)
52 2jku_A Propionyl-COA carboxyla 99.0 5.2E-11 1.8E-15 102.7 2.7 74 213-287 16-93 (94)
53 2dn8_A Acetyl-COA carboxylase 99.0 2.7E-10 9.2E-15 99.3 6.7 62 226-289 25-86 (100)
54 3n6r_A Propionyl-COA carboxyla 99.0 4.5E-10 1.5E-14 129.5 8.1 62 100-162 620-681 (681)
55 2eq9_C Pyruvate dehydrogenase 99.0 2.5E-10 8.6E-15 82.9 3.2 39 330-368 2-40 (41)
56 2d5d_A Methylmalonyl-COA decar 99.0 9.2E-10 3.2E-14 89.9 7.0 61 226-287 13-73 (74)
57 1dcz_A Transcarboxylase 1.3S s 99.0 1.1E-09 3.6E-14 90.5 7.3 61 226-287 16-76 (77)
58 3rnm_E Lipoamide acyltransfera 99.0 2.2E-10 7.5E-15 89.2 2.7 43 328-370 7-49 (58)
59 2eq8_C Pyruvate dehydrogenase 98.9 3.3E-10 1.1E-14 81.9 3.0 37 331-367 2-38 (40)
60 3va7_A KLLA0E08119P; carboxyla 98.9 7.9E-10 2.7E-14 134.2 8.0 61 100-161 1175-1235(1236)
61 2ejm_A Methylcrotonoyl-COA car 98.9 1.1E-09 3.8E-14 95.3 6.5 65 226-291 22-86 (99)
62 2eq7_C 2-oxoglutarate dehydrog 98.9 2.7E-10 9.1E-15 82.3 1.7 37 331-367 2-38 (40)
63 3u9t_A MCC alpha, methylcroton 98.9 1.4E-10 4.7E-15 133.7 0.0 64 100-164 610-673 (675)
64 3hbl_A Pyruvate carboxylase; T 98.9 1.2E-09 4.3E-14 132.1 8.0 64 100-164 1085-1148(1150)
65 1w85_I Dihydrolipoyllysine-res 98.8 9.2E-10 3.2E-14 83.1 2.8 40 329-368 7-46 (49)
66 1bal_A Dihydrolipoamide succin 98.8 6.9E-10 2.4E-14 84.5 1.9 40 328-367 9-48 (51)
67 3n6r_A Propionyl-COA carboxyla 98.8 3.5E-09 1.2E-13 122.1 7.1 61 226-287 620-680 (681)
68 3u9t_A MCC alpha, methylcroton 98.7 9.8E-10 3.4E-14 126.5 0.0 63 226-289 610-672 (675)
69 3hbl_A Pyruvate carboxylase; T 98.7 8.1E-09 2.8E-13 125.0 6.8 64 226-290 1085-1148(1150)
70 1w4i_A Pyruvate dehydrogenase 98.7 5E-09 1.7E-13 83.0 3.3 41 329-369 5-45 (62)
71 2f60_K Pyruvate dehydrogenase 98.7 4.5E-09 1.5E-13 83.7 2.6 41 329-369 10-50 (64)
72 2coo_A Lipoamide acyltransfera 98.7 1.1E-08 3.8E-13 82.8 4.2 41 329-369 16-56 (70)
73 2k32_A A; NMR {Campylobacter j 98.7 1.7E-08 5.8E-13 90.0 5.8 67 99-166 8-104 (116)
74 1zko_A Glycine cleavage system 98.7 2.2E-08 7.6E-13 91.7 6.4 62 103-165 47-116 (136)
75 3bg3_A Pyruvate carboxylase, m 98.6 7.4E-09 2.5E-13 119.0 1.6 61 100-161 657-717 (718)
76 2qf7_A Pyruvate carboxylase pr 98.6 2.5E-08 8.5E-13 121.0 4.5 62 100-162 1103-1164(1165)
77 2k32_A A; NMR {Campylobacter j 98.4 1.3E-07 4.4E-12 84.3 4.9 65 226-291 9-103 (116)
78 1zko_A Glycine cleavage system 98.4 2.7E-07 9.2E-12 84.5 6.5 61 228-289 46-114 (136)
79 3bg3_A Pyruvate carboxylase, m 98.4 6.6E-08 2.2E-12 111.2 2.5 61 226-287 657-717 (718)
80 2qf7_A Pyruvate carboxylase pr 98.3 1.9E-07 6.3E-12 113.4 4.5 62 226-288 1103-1164(1165)
81 1onl_A Glycine cleavage system 98.2 1.3E-06 4.4E-11 79.3 6.5 62 103-165 38-107 (128)
82 1hpc_A H protein of the glycin 98.2 6.5E-07 2.2E-11 81.5 3.7 64 101-165 36-107 (131)
83 3a7l_A H-protein, glycine clea 98.2 1.5E-06 5E-11 78.9 5.5 63 103-165 39-108 (128)
84 1hpc_A H protein of the glycin 98.0 3E-06 1E-10 77.1 3.6 49 227-275 36-85 (131)
85 3a7l_A H-protein, glycine clea 98.0 6.1E-06 2.1E-10 74.8 5.3 50 227-276 37-87 (128)
86 1onl_A Glycine cleavage system 97.9 5.6E-06 1.9E-10 75.1 3.6 61 227-288 36-104 (128)
87 3fpp_A Macrolide-specific effl 97.7 0.00016 5.4E-09 75.9 11.6 66 99-165 38-191 (341)
88 3ne5_B Cation efflux system pr 97.6 6.4E-05 2.2E-09 81.5 7.3 66 99-165 128-242 (413)
89 3lnn_A Membrane fusion protein 97.6 5.7E-05 1.9E-09 79.9 6.7 67 99-166 64-207 (359)
90 2f1m_A Acriflavine resistance 97.6 2.2E-05 7.5E-10 80.1 3.2 67 99-166 29-168 (277)
91 3klr_A Glycine cleavage system 97.6 8.3E-05 2.8E-09 66.9 5.9 77 87-164 19-102 (125)
92 3mxu_A Glycine cleavage system 97.4 0.00016 5.5E-09 66.3 6.1 63 87-150 41-104 (143)
93 3tzu_A GCVH, glycine cleavage 97.4 0.00018 6.1E-09 65.6 5.6 59 87-146 36-95 (137)
94 1vf7_A Multidrug resistance pr 97.3 0.0001 3.4E-09 78.6 3.2 66 99-165 50-174 (369)
95 2f1m_A Acriflavine resistance 97.2 9.8E-05 3.3E-09 75.2 2.6 64 226-290 30-166 (277)
96 3lnn_A Membrane fusion protein 97.2 0.00027 9.1E-09 74.7 5.8 64 226-290 65-205 (359)
97 3ne5_B Cation efflux system pr 97.2 0.00028 9.7E-09 76.4 5.9 63 226-289 129-240 (413)
98 3klr_A Glycine cleavage system 97.2 0.00042 1.4E-08 62.3 5.6 49 227-275 32-81 (125)
99 3fpp_A Macrolide-specific effl 97.1 0.00034 1.2E-08 73.3 5.2 64 226-290 39-190 (341)
100 3hgb_A Glycine cleavage system 97.1 0.00061 2.1E-08 63.2 6.1 59 87-146 46-105 (155)
101 3mxu_A Glycine cleavage system 97.0 0.00074 2.5E-08 61.9 5.5 49 227-275 54-103 (143)
102 3tzu_A GCVH, glycine cleavage 96.9 0.00081 2.8E-08 61.3 4.8 45 227-271 49-94 (137)
103 1vf7_A Multidrug resistance pr 96.8 0.00047 1.6E-08 73.4 2.7 64 226-290 51-173 (369)
104 4dk0_A Putative MACA; alpha-ha 96.8 9.9E-05 3.4E-09 78.2 -2.7 65 99-164 39-191 (369)
105 4dk0_A Putative MACA; alpha-ha 96.5 0.00052 1.8E-08 72.7 0.9 62 226-288 40-189 (369)
106 3hgb_A Glycine cleavage system 96.5 0.0022 7.5E-08 59.5 4.8 45 227-271 59-104 (155)
107 2xhc_A Transcription antitermi 95.9 0.026 9.1E-07 59.4 10.1 32 105-142 62-93 (352)
108 2xha_A NUSG, transcription ant 95.9 0.037 1.3E-06 53.1 9.9 30 105-140 22-51 (193)
109 3na6_A Succinylglutamate desuc 95.5 0.027 9.2E-07 59.0 8.2 61 101-164 265-329 (331)
110 3cdx_A Succinylglutamatedesucc 95.2 0.042 1.4E-06 58.0 8.6 60 103-165 277-340 (354)
111 3fmc_A Putative succinylglutam 95.0 0.044 1.5E-06 58.3 7.9 60 101-163 298-363 (368)
112 3na6_A Succinylglutamate desuc 94.6 0.049 1.7E-06 57.0 7.1 60 227-289 265-328 (331)
113 3cdx_A Succinylglutamatedesucc 94.2 0.08 2.8E-06 55.8 7.6 59 229-290 277-339 (354)
114 3fmc_A Putative succinylglutam 94.0 0.083 2.8E-06 56.1 7.3 60 227-289 298-363 (368)
115 1f3z_A EIIA-GLC, glucose-speci 93.4 0.054 1.9E-06 50.7 4.1 59 99-162 19-116 (161)
116 3lu0_D DNA-directed RNA polyme 92.9 0.089 3E-06 63.4 5.8 41 105-147 1002-1042(1407)
117 2gpr_A Glucose-permease IIA co 92.5 0.076 2.6E-06 49.3 3.6 59 99-162 14-111 (154)
118 1ax3_A Iiaglc, glucose permeas 91.5 0.082 2.8E-06 49.5 2.5 59 99-162 19-116 (162)
119 2qj8_A MLR6093 protein; struct 91.3 0.38 1.3E-05 50.1 7.7 60 101-163 265-328 (332)
120 1f3z_A EIIA-GLC, glucose-speci 90.7 0.27 9.1E-06 46.0 5.2 58 226-288 20-116 (161)
121 2gpr_A Glucose-permease IIA co 89.5 0.36 1.2E-05 44.7 5.0 58 226-288 15-111 (154)
122 3d4r_A Domain of unknown funct 89.0 0.46 1.6E-05 44.1 5.2 49 100-148 108-157 (169)
123 2qj8_A MLR6093 protein; struct 87.2 0.99 3.4E-05 46.9 7.1 60 227-289 265-328 (332)
124 1ax3_A Iiaglc, glucose permeas 86.8 0.41 1.4E-05 44.7 3.6 58 226-288 20-116 (162)
125 2xha_A NUSG, transcription ant 86.4 0.58 2E-05 44.8 4.4 31 231-267 22-52 (193)
126 2auk_A DNA-directed RNA polyme 83.7 0.91 3.1E-05 43.5 4.4 44 105-150 63-106 (190)
127 3d4r_A Domain of unknown funct 81.8 1.7 6E-05 40.3 5.3 45 226-270 108-153 (169)
128 2xhc_A Transcription antitermi 78.6 1.8 6E-05 45.5 4.8 32 230-267 61-92 (352)
129 2auk_A DNA-directed RNA polyme 77.2 2.4 8.1E-05 40.6 4.9 44 231-276 63-106 (190)
130 3fot_A 15-O-acetyltransferase; 77.1 11 0.00036 41.7 10.8 33 601-633 484-516 (519)
131 4hvm_A Tlmii; PSI-biology, mid 67.3 1.3E+02 0.0045 31.8 16.8 27 605-631 135-161 (493)
132 3our_B EIIA, phosphotransferas 65.9 8.3 0.00028 36.5 5.6 20 268-288 119-138 (183)
133 3our_B EIIA, phosphotransferas 56.1 4.5 0.00015 38.3 1.9 28 100-127 114-141 (183)
134 2bco_A Succinylglutamate desuc 53.3 13 0.00044 38.8 5.1 51 232-290 279-329 (350)
135 2bco_A Succinylglutamate desuc 52.5 10 0.00034 39.6 4.1 50 107-164 280-329 (350)
136 3lu0_D DNA-directed RNA polyme 52.5 10 0.00034 46.1 4.5 45 230-276 1001-1045(1407)
137 1q9j_A PAPA5, polyketide synth 49.4 90 0.0031 32.0 11.1 159 444-633 224-412 (422)
138 1qpo_A Quinolinate acid phosph 44.7 14 0.00048 37.4 3.6 25 101-126 71-95 (284)
139 2xr7_A Malonyltransferase; xen 42.7 19 0.00063 38.5 4.4 30 603-632 156-185 (453)
140 1o4u_A Type II quinolic acid p 42.6 13 0.00043 37.8 2.8 25 101-126 71-95 (285)
141 1x1o_A Nicotinate-nucleotide p 42.1 13 0.00046 37.6 3.0 25 101-126 72-96 (286)
142 3l0g_A Nicotinate-nucleotide p 42.1 14 0.00049 37.6 3.2 25 101-126 84-108 (300)
143 3tqv_A Nicotinate-nucleotide p 42.0 14 0.00047 37.6 3.0 25 101-126 75-99 (287)
144 1brw_A PYNP, protein (pyrimidi 41.8 25 0.00084 37.8 5.1 43 249-292 329-402 (433)
145 2bgh_A Vinorine synthase; VS, 41.6 19 0.00064 38.2 4.2 29 604-632 152-180 (421)
146 2dsj_A Pyrimidine-nucleoside ( 41.2 24 0.00083 37.7 4.9 42 249-292 322-394 (423)
147 2e1v_A Acyl transferase; BAHD 40.8 21 0.00073 38.1 4.5 30 603-632 161-190 (454)
148 2b7n_A Probable nicotinate-nuc 40.4 18 0.00061 36.3 3.6 25 101-126 58-82 (273)
149 2rkv_A Trichothecene 3-O-acety 39.7 21 0.00073 38.0 4.3 31 603-633 147-177 (451)
150 3gnn_A Nicotinate-nucleotide p 39.3 16 0.00054 37.3 3.0 24 102-126 87-110 (298)
151 3paj_A Nicotinate-nucleotide p 38.3 17 0.00057 37.5 3.0 25 101-126 108-132 (320)
152 1qap_A Quinolinic acid phospho 37.1 18 0.00062 36.8 3.0 25 101-126 85-109 (296)
153 4g22_A Hydroxycinnamoyl-COA sh 37.0 26 0.00088 37.4 4.4 29 604-632 150-178 (439)
154 3h5q_A PYNP, pyrimidine-nucleo 36.9 29 0.00098 37.3 4.7 39 249-288 332-401 (436)
155 2tpt_A Thymidine phosphorylase 35.4 23 0.00079 38.1 3.7 42 249-291 334-406 (440)
156 1uou_A Thymidine phosphorylase 35.0 33 0.0011 37.3 4.8 43 123-166 366-437 (474)
157 3h5q_A PYNP, pyrimidine-nucleo 33.7 20 0.00069 38.5 2.8 23 104-126 381-403 (436)
158 2jbm_A Nicotinate-nucleotide p 32.5 21 0.00071 36.4 2.6 25 101-126 71-95 (299)
159 1qpo_A Quinolinate acid phosph 31.8 21 0.00071 36.2 2.4 23 229-251 72-94 (284)
160 3tqv_A Nicotinate-nucleotide p 31.4 20 0.00068 36.4 2.2 22 230-251 77-98 (287)
161 1x1o_A Nicotinate-nucleotide p 31.2 20 0.00069 36.3 2.2 23 229-251 73-95 (286)
162 3l0g_A Nicotinate-nucleotide p 30.5 22 0.00074 36.3 2.3 23 229-251 85-107 (300)
163 1o4u_A Type II quinolic acid p 30.0 19 0.00066 36.4 1.8 23 229-251 72-94 (285)
164 2dsj_A Pyrimidine-nucleoside ( 29.9 28 0.00097 37.2 3.2 24 104-127 370-393 (423)
165 1brw_A PYNP, protein (pyrimidi 29.4 29 0.00099 37.3 3.2 24 104-127 378-401 (433)
166 3gnn_A Nicotinate-nucleotide p 29.2 23 0.00078 36.1 2.2 22 230-251 88-109 (298)
167 2vsq_A Surfactin synthetase su 28.8 5.3E+02 0.018 31.2 14.8 67 460-540 251-331 (1304)
168 2b7n_A Probable nicotinate-nuc 28.7 25 0.00086 35.2 2.4 22 230-251 60-81 (273)
169 3paj_A Nicotinate-nucleotide p 27.7 25 0.00086 36.2 2.2 23 229-251 109-131 (320)
170 1uou_A Thymidine phosphorylase 27.3 34 0.0012 37.2 3.3 24 104-127 413-436 (474)
171 1qap_A Quinolinic acid phospho 27.2 26 0.00089 35.7 2.2 23 229-251 86-108 (296)
172 3it5_A Protease LASA; metallop 26.6 25 0.00084 33.1 1.8 19 144-163 86-104 (182)
173 2tpt_A Thymidine phosphorylase 24.4 35 0.0012 36.7 2.7 29 226-254 379-407 (440)
174 2jbm_A Nicotinate-nucleotide p 23.9 29 0.00099 35.3 1.9 21 230-250 73-93 (299)
175 2jgp_A Tyrocidine synthetase 3 23.2 6.6E+02 0.023 26.3 15.2 76 444-539 316-403 (520)
176 2lmc_B DNA-directed RNA polyme 23.2 19 0.00066 29.6 0.3 17 232-248 67-83 (84)
177 3c2e_A Nicotinate-nucleotide p 22.2 37 0.0013 34.4 2.2 25 101-126 67-97 (294)
178 3qoq_A Alginate and motility r 21.4 1.6E+02 0.0055 23.1 5.3 43 430-477 17-59 (69)
179 3tuf_B Stage II sporulation pr 20.8 40 0.0014 33.3 2.1 19 144-163 136-154 (245)
180 3it5_A Protease LASA; metallop 20.8 37 0.0013 31.9 1.8 25 227-251 80-104 (182)
181 1qwy_A Peptidoglycan hydrolase 20.1 44 0.0015 33.8 2.3 22 143-165 239-260 (291)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=3.6e-88 Score=737.66 Aligned_cols=410 Identities=28% Similarity=0.429 Sum_probs=39.0
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|.++++
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAPGY 81 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999987655
Q ss_pred CcCCcCC-CCCCC---cccC-CCCCCC--CCCcc--ccc--cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeecc
Q 006594 293 DVGTVKN-SVTSG---AEVK-GEKETH--HDSKD--VVK--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKG 361 (639)
Q Consensus 293 ~~~~~~~-~~~~~---~~~~-~~~~~~--~~~~~--~~~--~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~ 361 (639)
+..+... ..... +.+. .+.+.+ ...+. .+. .......++||+||+||+|+||||+.|+||||+|||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~ 161 (428)
T 3dva_I 82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKE 161 (428)
T ss_dssp ----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTT
T ss_pred cccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHH
Confidence 4322110 00000 0000 000000 00000 000 011234579999999999999999999999999999999
Q ss_pred chHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeee
Q 006594 362 DVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDV 441 (639)
Q Consensus 362 DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~ev 441 (639)
||++|+....... +..+ +.+ ....| ..+. .......++++|+++|||.||++|.+|++++||||++.+|
T Consensus 162 DV~~~~~~~~~~~-~~~~----~~~--~~~~~--~~~~--~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~ev 230 (428)
T 3dva_I 162 DIDAFLAGGAKPA-PAAA----EEK--AAPAA--AKPA--TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEA 230 (428)
T ss_dssp TTTTTSCC------------------------------------------------------------------------
T ss_pred HHHHHhhcccccc-cccc----ccc--cccCC--CCcc--ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEE
Confidence 9999875321110 0000 000 00001 0000 0011123677899999999999999999999999999999
Q ss_pred echHHHHHHHHHhh---hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecC
Q 006594 442 VLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNA 518 (639)
Q Consensus 442 Dvt~l~~~rk~~~~---~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a 518 (639)
|+|+|+++|+++|. +.|.++||++||+||+++||++||+||++|+++.++|++|+++||||||++++||++|+|+++
T Consensus 231 Dvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a 310 (428)
T 3dva_I 231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHA 310 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccC
Confidence 99999999999874 468899999999999999999999999999874345999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCccc
Q 006594 519 DQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETP 598 (639)
Q Consensus 519 ~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~ 598 (639)
+.++|.+|+++++++.+++|+|+|.++|++||||||||+||||+++|+||||+||++||++|++.++|++.+| ++
T Consensus 311 ~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g-----~i 385 (428)
T 3dva_I 311 DRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-----EI 385 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECC-----EE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988655 79
Q ss_pred EEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 599 AVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 599 ~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
++|++|+|||+||||+|||+|+++||+.|+++||||+.||+
T Consensus 386 ~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll 426 (428)
T 3dva_I 386 VAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 426 (428)
T ss_dssp -----------------------------------------
T ss_pred EEeeeEEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhh
Confidence 99999999999999999999999999999999999999885
No 2
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=8.1e-58 Score=463.85 Aligned_cols=227 Identities=33% Similarity=0.439 Sum_probs=216.4
Q ss_pred CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (639)
Q Consensus 408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likAva~Al~~~P~ln~~ 484 (639)
.++++|+++|||.||++|.+|++++||||++.+||+|+|+++|+++|+ +.|.++||++|++||+++||++||+||++
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 456789999999999999999999999999999999999999998874 46789999999999999999999999999
Q ss_pred eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (639)
Q Consensus 485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~ 564 (639)
|+++.++|++|+++|||+||++++||++|+|++++.+||.+|+++++++++++|+|+|.++|++||||||||+||+|+++
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 173 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA 173 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence 98653459999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|+||||+||++||++|++.++|++.+| ++++|++|+|||+||||+|||+|+++||+.|+++||+|..||+
T Consensus 174 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 243 (243)
T 1dpb_A 174 FTPIVNAPEVAILGVSKASMQPVWDGK-----AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243 (243)
T ss_dssp CCCCCCTTSSEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred eECccCCCCCeEEEccccEEEEEEECC-----eEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999988655 7999999999999999999999999999999999999999885
No 3
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=1.3e-57 Score=462.66 Aligned_cols=220 Identities=27% Similarity=0.424 Sum_probs=211.8
Q ss_pred cCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccC--CC
Q 006594 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE--KG 490 (639)
Q Consensus 413 ~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~--~~ 490 (639)
|+++|||.||++|.+|++++||||++.+||+|+|+++|+++|+ .|.|+||++|++||+++||++||+||++|+++ .+
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~ 96 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGP 96 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSC
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCC
Confidence 9999999999999999999999999999999999999999964 57799999999999999999999999999764 24
Q ss_pred eEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccC
Q 006594 491 EIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIIN 570 (639)
Q Consensus 491 ~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~ 570 (639)
+|++|+++|||+||++++||++|||++++++||.+|+++++++++++|+|+|.++|++||||||||+||+|+++|+||||
T Consensus 97 ~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIin 176 (250)
T 3l60_A 97 QVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN 176 (250)
T ss_dssp EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCC
T ss_pred eEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594 571 PPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL 638 (639)
Q Consensus 571 ~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll 638 (639)
+||++||++|++.++|++.+| ++++|++|+|||+||||+|||+++++||+.|+++||+|+.|+
T Consensus 177 ppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~ 239 (250)
T 3l60_A 177 HPEAAILGLGAIKPRPVVVGG-----EVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETAL 239 (250)
T ss_dssp TTCSEEEEECCCEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHT
T ss_pred CCCceEEEecceEEEeEEECC-----EEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHh
Confidence 999999999999999988765 899999999999999999999999999999999999999886
No 4
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-58 Score=467.60 Aligned_cols=225 Identities=37% Similarity=0.538 Sum_probs=215.4
Q ss_pred CCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccc
Q 006594 407 DSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEAN 482 (639)
Q Consensus 407 ~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln 482 (639)
...+++|+++|||+||++|.+|++++||||++.+||+|+|+++|+++|+ +.|.++||++|++||+++||++||+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 3467899999999999999999999999999999999999999999874 358899999999999999999999999
Q ss_pred eeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCc
Q 006594 483 AYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPV 562 (639)
Q Consensus 483 ~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~ 562 (639)
++|++++ |++|++||||+||++++||++|+|+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus 96 a~~~~~~--i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~ 173 (256)
T 3mae_A 96 STWAGDK--IIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173 (256)
T ss_dssp EEEETTE--EEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred hEEecCE--EEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence 9998764 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594 563 DQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL 638 (639)
Q Consensus 563 ~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll 638 (639)
++|+||||+||++||++|++.++|++.+| ++++|++|+|||+||||+|||+++|+||+.|+++||+|+.|.
T Consensus 174 ~~ftpIInppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~ 244 (256)
T 3mae_A 174 VQSMGIINHPQAAILQVESIVKRPVIIDD-----MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKEN 244 (256)
T ss_dssp SEEECCCCTTSSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTT
T ss_pred cceEcccCCCCceEEEecccEEEEEEECC-----EEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHH
Confidence 99999999999999999999999988765 899999999999999999999999999999999999999764
No 5
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=5.9e-58 Score=462.10 Aligned_cols=224 Identities=37% Similarity=0.564 Sum_probs=214.0
Q ss_pred cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (639)
Q Consensus 409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~ 484 (639)
.+++|+++|||.||++|.+|++++||||++.++|+|+|+++|+++|+ +.|.++||++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 34579999999999999999999999999999999999999999874 35789999999999999999999999999
Q ss_pred eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (639)
Q Consensus 485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~ 564 (639)
|++++ +++|+++|||+||++++||++|+|++++.+||.+|+++++++++++|+|+|.++|++||||||||+||+|..+
T Consensus 84 ~~~~~--i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~ 161 (233)
T 1scz_A 84 IDGDD--VVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM 161 (233)
T ss_dssp EETTE--EECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred EeCCE--EEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence 98654 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|+|||||||++||++|++.++|++.+| ++++|++|+|||+||||+|||+|+|+||+.|+++||+|..||+
T Consensus 162 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 231 (233)
T 1scz_A 162 STPIINPPQSAILGMHAIKDRPMAVNG-----QVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231 (233)
T ss_dssp CCCCCCTTCSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred eEcccCCCCcEEEEccccEEEEEEECC-----EEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhh
Confidence 999999999999999999999988665 7999999999999999999999999999999999999998764
No 6
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=4.3e-57 Score=462.55 Aligned_cols=227 Identities=29% Similarity=0.393 Sum_probs=214.4
Q ss_pred CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (639)
Q Consensus 408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likAva~Al~~~P~ln~~ 484 (639)
.++++|+++|||.||++|.+|+ ++||||++.+||+|+|+++|+++|+ +.|.++||++|++||+++||++||+||++
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~ 108 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS 108 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence 4677899999999999999996 6999999999999999999999874 46889999999999999999999999999
Q ss_pred eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (639)
Q Consensus 485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~ 564 (639)
|+++.++|++|+++|||+||++++||++|+|++++.+||.+|+++++++++++|+|+|.++|++||||||||+||+|.++
T Consensus 109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~ 188 (262)
T 2ii3_A 109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTY 188 (262)
T ss_dssp ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSC
T ss_pred EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccc
Confidence 98754579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
|+||||+||+|||++|++.++|++.+ || ++++|.+|+|||+||||+|||+|+++||+.|+++||+|..||+
T Consensus 189 ~tPIinppq~aIL~vG~~~~~pv~~~--~g--~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~ 259 (262)
T 2ii3_A 189 AKPVILPPEVAIGALGTIKALPRFNE--KG--EVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL 259 (262)
T ss_dssp EECCCCTTCCEEEEECCCEEEEEECT--TS--CEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHH
T ss_pred eECccCCCcceEEEcCccEEEEEEec--CC--cEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHh
Confidence 99999999999999999999988752 23 7999999999999999999999999999999999999998763
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=1.6e-56 Score=449.15 Aligned_cols=217 Identities=32% Similarity=0.436 Sum_probs=207.8
Q ss_pred cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccC
Q 006594 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE 488 (639)
Q Consensus 409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~ 488 (639)
.+++|+++|||+||++|.+|++++||||++.+||+|+|+++|+++|++ |.|+||++|++||+++||++||+||++|+++
T Consensus 6 ~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~ 84 (224)
T 3rqc_A 6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-NRKVTVTGFLARIVPSILKQYPYLNAIYDET 84 (224)
T ss_dssp CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-TCCCCHHHHHHHHHHHHHHHSGGGSBBCCSS
T ss_pred ceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHhCHHhheEEeCC
Confidence 567899999999999999999999999999999999999999999765 8899999999999999999999999999887
Q ss_pred CCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeec
Q 006594 489 KGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAI 568 (639)
Q Consensus 489 ~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pi 568 (639)
.++|++|+++|||+||++++||++|+|+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+++|+||
T Consensus 85 ~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpi 164 (224)
T 3rqc_A 85 RRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPI 164 (224)
T ss_dssp TTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECC
T ss_pred CCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEec
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 569 INPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 569 i~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
||+||++||++|++.+++ + |++|+|||+||||++||+|+++||+.|+++||+|+.||+
T Consensus 165 in~pq~aIl~vG~~~~~p----~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~ 222 (224)
T 3rqc_A 165 INYPEVAILGVHRILERE----G---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIY 222 (224)
T ss_dssp CCTTBSEEEEECCCEEET----T---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC
T ss_pred cCCCCceEEEecccEEEC----C---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhh
Confidence 999999999999999762 1 789999999999999999999999999999999999875
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=9.1e-57 Score=455.52 Aligned_cols=227 Identities=48% Similarity=0.738 Sum_probs=213.6
Q ss_pred CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhh--CCCCcCHHHHHHHHHHHHHhhCcccceee
Q 006594 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK--HNTKVSVNDIVIKAVAVALKNVPEANAYW 485 (639)
Q Consensus 408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~--~g~kls~~~~likAva~Al~~~P~ln~~~ 485 (639)
.++++|+++|||.||++|.+|++++||||++.++|+|+|+++|+++|+. .+.++||++|++||+++||++||+||++|
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~ 90 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSW 90 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence 3677899999999999999999999999999999999999999998752 22599999999999999999999999999
Q ss_pred ccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccce
Q 006594 486 DVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565 (639)
Q Consensus 486 ~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~ 565 (639)
++++ +++|+++|||+||++++||++|+|++++.++|.+|+++++++++++|+|+|.++|++||||||||+||+|+++|
T Consensus 91 ~~~~--i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f 168 (239)
T 3b8k_A 91 MDTV--IRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 168 (239)
T ss_dssp CCCS--SSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred ECCE--EEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence 8765 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594 566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639 (639)
Q Consensus 566 ~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~ 639 (639)
+||+|+||++||++|++.++|+++ ++|| ++++|.+|+|||+||||+|||+|+|+||+.|+++||+|+.||+
T Consensus 169 tpiin~pq~aIl~vG~~~~~pv~~-~~~g--~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~ 239 (239)
T 3b8k_A 169 SAIINPPQACILAIGASEDKLVPA-DNEK--GFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239 (239)
T ss_dssp CCCCCTTSCCCCEECCCCCSCCCC-CSSS--SCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred ECcCCCCceEEEECcccEEEEEEE-cCCC--cEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999998774 1233 7999999999999999999999999999999999999998875
No 9
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=2e-42 Score=345.68 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=173.0
Q ss_pred HHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcC
Q 006594 417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCD 496 (639)
Q Consensus 417 ~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~ 496 (639)
-||.-.... ..+++||||++.+||+|+|+++||+. ++||++|++||+++||++||+||++|+++ +|++|+
T Consensus 17 ~R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~ 86 (219)
T 1q23_A 17 HRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWD 86 (219)
T ss_dssp TTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEES
T ss_pred CCHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEec
Confidence 355455554 34799999999999999999999875 89999999999999999999999999865 499999
Q ss_pred CccEEEEE-ecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCeEEEEeCCCCCccceeeccCCCc
Q 006594 497 AIDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPPQ 573 (639)
Q Consensus 497 ~v~i~iAV-~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~-~d~~ggtftISnlG~~g~~~~~pii~~p~ 573 (639)
+||||+|| ++++||++|++.. +.+++.+|+++++++++++|+| +|.+ +|+ ||||||||+||++++.+.+.++++.
T Consensus 87 ~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~ 164 (219)
T 1q23_A 87 SVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMD 164 (219)
T ss_dssp CCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCT
T ss_pred ccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCc
Confidence 99999999 9999999999986 6789999999999999999998 6976 888 9999999999998777776665543
Q ss_pred ---ceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchh
Q 006594 574 ---AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIR 635 (639)
Q Consensus 574 ---~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~ 635 (639)
+|||++|++.++ ++ |.+|||||+||||++||+|+|+||+.|+++||+|.
T Consensus 165 ~~~~pIi~~G~~~~~----~~---------r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~ 216 (219)
T 1q23_A 165 NFFAPVFTMGKYYTQ----GD---------KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216 (219)
T ss_dssp TCCSCEEEECCCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred cceeEEEecccEEEE----CC---------cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence 699999999875 33 79999999999999999999999999999999863
No 10
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.1e-43 Score=421.71 Aligned_cols=213 Identities=18% Similarity=0.271 Sum_probs=173.5
Q ss_pred HhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCC--CeEEEcCC
Q 006594 424 RLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEK--GEIVLCDA 497 (639)
Q Consensus 424 ~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~--~~i~~~~~ 497 (639)
+|.+|+ ++||||++.+||+|+|+++|+++|+ +.|.|+||++||+||+++||++||+||++|+++. ++|++|++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 478885 8999999999999999999999875 3688999999999999999999999999998642 26999999
Q ss_pred ccEEEEEecC--CC---eEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCC
Q 006594 498 IDISIAVATE--KG---LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP 572 (639)
Q Consensus 498 v~i~iAV~~~--~g---l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p 572 (639)
||||+||+++ +| |++|||++++.+||.+|+++++++++++|+|+|+++|++||||||||+||+|.++|+||||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp 159 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence 9999999997 66 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCceEEEEEeeCCC-CCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhh
Q 006594 573 QAGILAVGRGNQVVEPVIGSD-GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRL 637 (639)
Q Consensus 573 ~~ail~vG~~~~~~~~~~g~~-G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~l 637 (639)
|++||++|++.++|++.++++ +..+++++++|+|||+||||||||+++++||+.|+++||+|+.|
T Consensus 160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w 225 (1113)
T 2xt6_A 160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF 225 (1113)
T ss_dssp CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence 999999999998876643110 00168899999999999999999999999999999999999866
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=9.3e-42 Score=339.62 Aligned_cols=192 Identities=17% Similarity=0.164 Sum_probs=170.7
Q ss_pred HHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCC
Q 006594 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA 497 (639)
Q Consensus 418 r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~ 497 (639)
||.--.... .+++||||++.+||+|+|+++||+. ++||+++++||+++||++||+||++|+++ +|++|++
T Consensus 13 R~~~f~~f~--~~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~ 82 (213)
T 3cla_A 13 RREHFEFYR--HRLPCGFSLTSKIDITTLKKSLDDS------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDS 82 (213)
T ss_dssp THHHHHHHH--HTSCCEEEEEEEEECHHHHHHHHTS------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESC
T ss_pred cHHHHHHHh--CCCCceEEEEEEEEHHHHHHHHHHh------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEec
Confidence 444444443 2589999999999999999999765 89999999999999999999999999865 4999999
Q ss_pred ccEEEEE-ecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCeEEEEeCCCCCccceeeccCCC--
Q 006594 498 IDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPP-- 572 (639)
Q Consensus 498 v~i~iAV-~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~-~d~~ggtftISnlG~~g~~~~~pii~~p-- 572 (639)
||||+|| ++++||++|++.+ +.+++.+|+++++++++++|+| +|.+ +|++||||||||+||++++.|+...+.+
T Consensus 83 v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~ 161 (213)
T 3cla_A 83 VDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTD 161 (213)
T ss_dssp CEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTT
T ss_pred cceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCc
Confidence 9999999 9999999999987 6789999999999999999996 9988 8899999999999999988876444433
Q ss_pred -cceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 573 -QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 573 -~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
..|||++|++.++ +| +.+|||||+||||+|||+|+|+||+.|+++||+
T Consensus 162 ~~~PIi~~G~~~~~----~~---------~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 162 YFAPIITMAKYQQE----GD---------RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp CCSCEEEEECCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred ccccEEEeeEEEEE----CC---------eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 2699999999875 33 799999999999999999999999999999998
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-40 Score=330.85 Aligned_cols=190 Identities=17% Similarity=0.146 Sum_probs=168.8
Q ss_pred HHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeec-cCCCeEEEcC
Q 006594 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWD-VEKGEIVLCD 496 (639)
Q Consensus 418 r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~-~~~~~i~~~~ 496 (639)
||.--.... .+++||||++.+||+|+|+++||+. ++||+++++||+++||++||+||++|+ ++. |++|+
T Consensus 15 R~~~f~~f~--~~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~--i~~~~ 84 (217)
T 2i9d_A 15 RKENFNFFR--HFQNPQLSITSEVECGGARQRAKAA------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGR--VVLYD 84 (217)
T ss_dssp THHHHHHHT--TCSBCEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSC--EEEES
T ss_pred CHHHHHHHh--CCCCceEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCE--EEEec
Confidence 444444432 3689999999999999999999876 899999999999999999999999998 554 99999
Q ss_pred CccEEEEE-ecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHc-CCCCCC------CCCCCeEEEEeCCCCCccceeec
Q 006594 497 AIDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARA-GKLAPH------EFQGGTFSISNLGMFPVDQFCAI 568 (639)
Q Consensus 497 ~v~i~iAV-~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~-g~l~~~------d~~ggtftISnlG~~g~~~~~pi 568 (639)
+||||+|| ++++||++|++. ++.+++.+|+++++++++++|+ |+|.++ |++||||||||+||++++.|+..
T Consensus 85 ~i~igvAVf~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~ 163 (217)
T 2i9d_A 85 TIDMLSPIKIKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGT 163 (217)
T ss_dssp CCEEEEEEECSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCC
T ss_pred ccCeEEEEEecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecC
Confidence 99999999 999999999986 5678999999999999999999 599995 99999999999999998888655
Q ss_pred cCCC---cceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHH
Q 006594 569 INPP---QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNF 631 (639)
Q Consensus 569 i~~p---~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~L 631 (639)
.+++ ..|||++|++.++ ++ |.+|||||++|||+|||+|+|+||+.|+++|
T Consensus 164 ~~~g~~~~~PIi~~Gk~~~~----~~---------r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l 216 (217)
T 2i9d_A 164 QEKRSGNNYPLLNAGKAIIR----EG---------RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL 216 (217)
T ss_dssp BCSTTCCSSCEEEECCCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccceEEEEecceEEEE----CC---------cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence 5544 2699999999865 33 7999999999999999999999999999987
No 13
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.94 E-value=4.2e-28 Score=242.83 Aligned_cols=158 Identities=36% Similarity=0.580 Sum_probs=38.3
Q ss_pred ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+..|.+|++|++|.+++
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~~ 82 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 82 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEeccC
Confidence 35799999999999999999999999999999999999999999999999999999999999993399999999997554
Q ss_pred CCcCCc--CCCC-CCCcccCCCCC--CCCCCcccccc----ccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccc
Q 006594 292 GDVGTV--KNSV-TSGAEVKGEKE--THHDSKDVVKV----QKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGD 362 (639)
Q Consensus 292 ~~~~~~--~~~~-~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~D 362 (639)
++.... +... ...+....+.+ .+....+.+.. ......++||+||+||+|+||||+.|+|||++|||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRItk~D 162 (229)
T 1zy8_K 83 EDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162 (229)
T ss_dssp -----------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHH
T ss_pred ccccccccccccccccccccCCCcccccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCceehHH
Confidence 332110 0000 00000000000 00000000000 011235689999999999999999999999999999999
Q ss_pred hHHHHhc
Q 006594 363 VLAAIKS 369 (639)
Q Consensus 363 V~~~~~~ 369 (639)
|++|+..
T Consensus 163 V~~~~~~ 169 (229)
T 1zy8_K 163 ALKLVQL 169 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999864
No 14
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.78 E-value=8.1e-19 Score=159.84 Aligned_cols=93 Identities=55% Similarity=0.916 Sum_probs=81.5
Q ss_pred ccccc-cCCCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccc
Q 006594 75 VRHFS-SSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDV 152 (639)
Q Consensus 75 ~r~~~-~~~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v 152 (639)
+|.|. .+.+++++.|+||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |
T Consensus 15 ~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V 93 (128)
T 1y8o_B 15 ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-V 93 (128)
T ss_dssp --------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-E
T ss_pred ccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-e
Confidence 34443 3467889999999999999999999999999999999999999999999999999999999999999998 8 9
Q ss_pred cCCCcEEEEecCCccc
Q 006594 153 PVGQPIAITVEDADDI 168 (639)
Q Consensus 153 ~~G~~l~~i~~~~~~~ 168 (639)
.+|++|+.|.+.+++.
T Consensus 94 ~~G~~L~~i~~~~~~~ 109 (128)
T 1y8o_B 94 PLGTPLCIIVEKEADI 109 (128)
T ss_dssp ETTCEEEEEESSGGGG
T ss_pred cCCCEEEEEecCccch
Confidence 9999999998765443
No 15
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=156.06 Aligned_cols=86 Identities=59% Similarity=0.912 Sum_probs=80.9
Q ss_pred CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEE
Q 006594 82 ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAI 160 (639)
Q Consensus 82 ~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~ 160 (639)
.+++++.|+||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|+.
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~ 81 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI 81 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence 36888999999999999999999999999999999999999999999999999999999999999999 8 999999999
Q ss_pred EecCCccc
Q 006594 161 TVEDADDI 168 (639)
Q Consensus 161 i~~~~~~~ 168 (639)
|...+++.
T Consensus 82 i~~~~~~~ 89 (108)
T 2dne_A 82 TVGKPEDI 89 (108)
T ss_dssp EESCHHHH
T ss_pred EecCccch
Confidence 98765443
No 16
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.74 E-value=9e-18 Score=143.26 Aligned_cols=83 Identities=57% Similarity=0.969 Sum_probs=78.6
Q ss_pred CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEEE
Q 006594 83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAIT 161 (639)
Q Consensus 83 ~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~i 161 (639)
+++++.+.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |..|++|+.|
T Consensus 2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i 80 (87)
T 3crk_C 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCII 80 (87)
T ss_dssp CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEE
T ss_pred CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEE
Confidence 4667899999999999999999999999999999999999999999999999999999999999999 8 9999999999
Q ss_pred ecCCc
Q 006594 162 VEDAD 166 (639)
Q Consensus 162 ~~~~~ 166 (639)
...++
T Consensus 81 ~~~~~ 85 (87)
T 3crk_C 81 VEKEA 85 (87)
T ss_dssp ESSST
T ss_pred EcccC
Confidence 76543
No 17
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=146.38 Aligned_cols=83 Identities=53% Similarity=0.866 Sum_probs=78.5
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccc-cCCCcEEEEe
Q 006594 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDV-PVGQPIAITV 162 (639)
Q Consensus 84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v-~~G~~l~~i~ 162 (639)
.+.+.++||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|.
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLIV 83 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEEe
Confidence 5668999999999999999999999999999999999999999999999999999999999999999 9 9999999998
Q ss_pred cCCcc
Q 006594 163 EDADD 167 (639)
Q Consensus 163 ~~~~~ 167 (639)
..+++
T Consensus 84 ~~~~~ 88 (98)
T 2dnc_A 84 EEGED 88 (98)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 65543
No 18
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.71 E-value=3.1e-17 Score=141.73 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=76.8
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
.+.+.|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~ 80 (93)
T 1k8m_A 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIET 80 (93)
T ss_dssp CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEEC
T ss_pred CcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEec
Confidence 3458899999999999999999999999999999999999999999999999999999999999999 999999999975
Q ss_pred CC
Q 006594 164 DA 165 (639)
Q Consensus 164 ~~ 165 (639)
.+
T Consensus 81 ~~ 82 (93)
T 1k8m_A 81 EA 82 (93)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 19
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.68 E-value=8.2e-17 Score=146.60 Aligned_cols=86 Identities=52% Similarity=0.952 Sum_probs=80.1
Q ss_pred CCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEEE
Q 006594 208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI 286 (639)
Q Consensus 208 ~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~~ 286 (639)
..|..+++.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|++
T Consensus 23 ~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V~~G~~L~~ 101 (128)
T 1y8o_B 23 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCI 101 (128)
T ss_dssp CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-EETTCEEEE
T ss_pred cCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-ecCCCEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999998 8 999999999
Q ss_pred EecCCCCc
Q 006594 287 TVEDPGDV 294 (639)
Q Consensus 287 i~~~~~~~ 294 (639)
|...+++.
T Consensus 102 i~~~~~~~ 109 (128)
T 1y8o_B 102 IVEKEADI 109 (128)
T ss_dssp EESSGGGG
T ss_pred EecCccch
Confidence 98765443
No 20
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=144.09 Aligned_cols=86 Identities=53% Similarity=0.862 Sum_probs=80.2
Q ss_pred CCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEEE
Q 006594 208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI 286 (639)
Q Consensus 208 ~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~~ 286 (639)
..|..+++.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|++
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~ 81 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI 81 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence 46677899999999999999999999999999999999999999999999999999999999999998 8 999999999
Q ss_pred EecCCCCc
Q 006594 287 TVEDPGDV 294 (639)
Q Consensus 287 i~~~~~~~ 294 (639)
|...+++.
T Consensus 82 i~~~~~~~ 89 (108)
T 2dne_A 82 TVGKPEDI 89 (108)
T ss_dssp EESCHHHH
T ss_pred EecCccch
Confidence 98665443
No 21
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=138.39 Aligned_cols=85 Identities=46% Similarity=0.779 Sum_probs=79.2
Q ss_pred CCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccc-cCCCeEEEE
Q 006594 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDV-AVGQPIAIT 287 (639)
Q Consensus 209 ~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v-~vG~~l~~i 287 (639)
.+..+++.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|
T Consensus 4 ~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i 82 (98)
T 2dnc_A 4 GSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLI 82 (98)
T ss_dssp CCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEE
T ss_pred CcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 9 999999999
Q ss_pred ecCCCCc
Q 006594 288 VEDPGDV 294 (639)
Q Consensus 288 ~~~~~~~ 294 (639)
...+++.
T Consensus 83 ~~~~~~~ 89 (98)
T 2dnc_A 83 VEEGEDW 89 (98)
T ss_dssp ECTTSCS
T ss_pred ecCCCcc
Confidence 8765543
No 22
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.66 E-value=1.9e-16 Score=134.94 Aligned_cols=82 Identities=52% Similarity=0.950 Sum_probs=77.4
Q ss_pred CCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEEEEe
Q 006594 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAITV 288 (639)
Q Consensus 210 ~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~~i~ 288 (639)
|.+.++.||++|.++.+|+|.+|+|++||.|++||+||+||++|+.++|+||++|+|.++++++|+ . |..|++|+.|.
T Consensus 3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i~ 81 (87)
T 3crk_C 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCIIV 81 (87)
T ss_dssp CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEEE
T ss_pred CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEEE
Confidence 456889999999999999999999999999999999999999999999999999999999999999 8 99999999997
Q ss_pred cCCC
Q 006594 289 EDPG 292 (639)
Q Consensus 289 ~~~~ 292 (639)
..++
T Consensus 82 ~~~~ 85 (87)
T 3crk_C 82 EKEA 85 (87)
T ss_dssp SSST
T ss_pred cccC
Confidence 6543
No 23
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.64 E-value=2.4e-16 Score=131.78 Aligned_cols=76 Identities=28% Similarity=0.560 Sum_probs=73.6
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
+.++||++|+++.+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999999 999999999964
No 24
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.64 E-value=1.5e-17 Score=181.16 Aligned_cols=81 Identities=35% Similarity=0.592 Sum_probs=0.0
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|++++
T Consensus 2 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 2 AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAPG 80 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999 99999999998765
Q ss_pred cc
Q 006594 166 DD 167 (639)
Q Consensus 166 ~~ 167 (639)
++
T Consensus 81 ~~ 82 (428)
T 3dva_I 81 YE 82 (428)
T ss_dssp --
T ss_pred cc
Confidence 54
No 25
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.61 E-value=4.3e-17 Score=163.07 Aligned_cols=81 Identities=52% Similarity=0.880 Sum_probs=0.0
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
|.++|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+..|.+|++|++|..+
T Consensus 2 ~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999339999999999754
Q ss_pred C
Q 006594 165 A 165 (639)
Q Consensus 165 ~ 165 (639)
+
T Consensus 82 ~ 82 (229)
T 1zy8_K 82 G 82 (229)
T ss_dssp -
T ss_pred C
Confidence 4
No 26
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.61 E-value=1.4e-15 Score=127.23 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=72.8
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.+.+.||++|++ +|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|...
T Consensus 2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE 77 (80)
T ss_dssp EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence 368999999998 999999999999999999999999999999999999999999999999999 9999999999754
No 27
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.60 E-value=1.7e-15 Score=130.83 Aligned_cols=78 Identities=22% Similarity=0.430 Sum_probs=74.8
Q ss_pred ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
.+++.||++|.++.+|+|.+|+|++||.|++||+|++||++|+.++|+||++|+|.++++++|+. |..|++|+.|...
T Consensus 4 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE 81 (93)
T ss_dssp CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred ceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999 9999999999753
No 28
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.60 E-value=1.4e-15 Score=126.33 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=73.1
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
++++||++|+++.+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999 99999999985
No 29
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.59 E-value=4.6e-17 Score=136.56 Aligned_cols=76 Identities=32% Similarity=0.523 Sum_probs=73.3
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
+.++||++|+++.+|+|.+|++++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 5689999999999999999999999999999999999999999999999999999999999999 999999998853
No 30
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.58 E-value=4.1e-15 Score=124.22 Aligned_cols=76 Identities=28% Similarity=0.579 Sum_probs=73.4
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
+++.||++|.++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999964
No 31
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.54 E-value=1.8e-15 Score=126.82 Aligned_cols=76 Identities=33% Similarity=0.535 Sum_probs=72.9
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.++.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 4688999999999999999999999999999999999999999999999999999999999999 999999998853
No 32
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.53 E-value=1.5e-14 Score=120.69 Aligned_cols=75 Identities=25% Similarity=0.362 Sum_probs=71.0
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
+.+.||++|++ + +|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecCC
Confidence 46899999996 7 9999999999999999999999999999999999999999999999999 99999999997543
No 33
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.51 E-value=5.1e-15 Score=124.21 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=72.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
.+.+.||++| +...|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence 4678999999 688999999999999999999999999999999999999999999999999999 999999999964
No 34
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.50 E-value=3.6e-14 Score=117.77 Aligned_cols=75 Identities=29% Similarity=0.509 Sum_probs=72.6
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.++.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence 4688999999999999999999999999999999999999999999999999999999999999 99999999885
No 35
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.48 E-value=5.3e-14 Score=117.60 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=71.9
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+++.||++|.+ .|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE 77 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence 46899999998 999999999999999999999999999999999999999999999999999 9999999999754
No 36
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.45 E-value=2e-13 Score=113.83 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=70.1
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+++.||++|.+ + +|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA 75 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence 46889999996 6 9999999999999999999999999999999999999999999999999 9999999999754
No 37
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.41 E-value=1.2e-13 Score=115.70 Aligned_cols=76 Identities=28% Similarity=0.401 Sum_probs=72.1
Q ss_pred ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.+++.||+++ ++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. +..|++|+.|..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence 3578999999 688999999999999999999999999999999999999999999999999999 999999999964
No 38
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.39 E-value=3.1e-14 Score=120.68 Aligned_cols=72 Identities=28% Similarity=0.368 Sum_probs=67.7
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
+.|.+|.+ |+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence 45778888 89999999999999999999999999999999999999999999999999 99999999997543
No 39
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.36 E-value=5.8e-13 Score=112.77 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=67.4
Q ss_pred eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
+++.+|.+ |+|.+|++++||.|++||+|++||++|...+|.||++|+|.++++++|+. |..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence 35778877 89999999999999999999999999999999999999999999999999 99999999997654
No 40
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.29 E-value=2.8e-12 Score=108.34 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=62.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
.+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.+++ .+|+. |..|++|+.|.....
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~~~ 77 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELDDL 77 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECSCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCCCh
Confidence 5699999999999999999999999999999999999999999999 99999 999999999976543
No 41
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.27 E-value=9.9e-13 Score=113.57 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCCcceEEecCCCCCCC----ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCc
Q 006594 82 ELPSHTVVGMPALSPTM----SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQP 157 (639)
Q Consensus 82 ~~~~~~~v~~p~~~~~~----~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~ 157 (639)
.......|.+|...+.. ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++.+|+. |..|++
T Consensus 11 ~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~ 89 (94)
T 2jku_A 11 VDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDL 89 (94)
T ss_dssp -------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--------------------------------
T ss_pred ccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCE
Confidence 34455778899988764 4899999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEEe
Q 006594 158 IAITV 162 (639)
Q Consensus 158 l~~i~ 162 (639)
|+.|+
T Consensus 90 L~~ie 94 (94)
T 2jku_A 90 LVELE 94 (94)
T ss_dssp -----
T ss_pred EEEEC
Confidence 99873
No 42
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.27 E-value=6.9e-12 Score=102.30 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=61.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999 999999999864
No 43
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=106.93 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=61.7
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|. +++++|+. |..|++|+.|...+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEcCC
Confidence 4699999999999999999999999999999999999999999 99999999 99999999997544
No 44
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.15 E-value=7.4e-11 Score=96.52 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=60.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
..|+|.+|++++||.|++||+|+++|++|+...|.||++|+|.++++.+|+. |..|++|+.|+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEC
Confidence 4699999999999999999999999999999999999999999999999999 99999999873
No 45
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.15 E-value=4.6e-11 Score=100.83 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=60.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
.|+|.+|++++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+. |..|++|+.|...
T Consensus 13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~ 75 (84)
T 2kcc_A 13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELD 75 (84)
T ss_dssp SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECS
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCC
Confidence 589999999999999999999999999999999999999999999 99999 9999999999643
No 46
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.14 E-value=8.1e-11 Score=97.24 Aligned_cols=63 Identities=29% Similarity=0.379 Sum_probs=60.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
..|.|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++.+|+. |..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEEC
Confidence 4689999999999999999999999999999999999999999999999999 99999999873
No 47
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.13 E-value=8.1e-11 Score=102.49 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=63.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++..|+. |..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCCc
Confidence 4699999999999999999999999999999999999999999999999999 999999999976544
No 48
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.12 E-value=6.3e-11 Score=98.81 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=54.8
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++|+.|+
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i~ 80 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE 80 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEEC
Confidence 4699999999999999999999999999999999999999999999 99999999873
No 49
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.11 E-value=8.9e-11 Score=95.62 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=60.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~ 69 (72)
T 1z6h_A 7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN 69 (72)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999 999999999864
No 50
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.08 E-value=4.2e-12 Score=154.02 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=104.2
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCcccccccccccCCcccccc
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQ 184 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 184 (639)
=|+.++||+|.- ..|.-++.....+...+|.. ++.++++ . ....+.+..+.+..++++.+...-..+..+..+
T Consensus 1067 p~ll~~gD~VrF----~~v~~~e~~~~~~~~~~G~~-~~~i~e~-~-f~~~~~~~~l~~~~~~i~~f~~~q~~a~~~e~~ 1139 (1236)
T 3va7_A 1067 PWLLTPFDQVEF----YPVTEEELEVIIEDNDNGKF-KIDVEES-I-FDHKEYLAWINENIDSIVAFQEAQGGEKADEFA 1139 (1236)
T ss_dssp SBCCCTTCEEEE----EEECHHHHHHHHHHHHTTCS-BCEEEEE-E-EEHHHHHHHHHTTHHHHHHHHHTSCSHHHHHHH
T ss_pred chhcCCCCEEEe----ccCCHHHHHHHHHHHhCCce-eeEEEEE-E-eeHHHHHHHHhhchhhHHHHHhhhhhhhHhhhh
Confidence 488899998864 34444444444444457776 7777774 4 566666766666666555444321111000000
Q ss_pred -----cccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEe
Q 006594 185 -----SSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFE 259 (639)
Q Consensus 185 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~ 259 (639)
........++ . .....+........+.-|. .|+|.+|+|++||.|++||+|++||+||++++|+
T Consensus 1140 ~w~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~v~ap~------~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ 1208 (1236)
T 3va7_A 1140 RLIQVANAELKKSGD--D---KPQDVEEYPDDAELLYSEY------TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVG 1208 (1236)
T ss_dssp HHHTSCCCCCCCC-------------CCCCTTCEEEECSS------CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEE
T ss_pred hhhhccccccccccc--c---cCccccccCCCCcEEeCCC------cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEe
Confidence 0000000000 0 0000111122334454332 2899999999999999999999999999999999
Q ss_pred cCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 260 CLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 260 s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
||.+|+|.+|++++|+. |.+|++|++|.
T Consensus 1209 ap~~G~v~~i~v~~G~~-V~~G~~l~~i~ 1236 (1236)
T 3va7_A 1209 ATKSGKVYKILHKNGDM-VEAGDLVAVIV 1236 (1236)
T ss_dssp CSSCEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred cCCCeEEEEEEeCCcCE-eCCCCEEEEeC
Confidence 99999999999999999 99999999873
No 51
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.07 E-value=1.8e-10 Score=96.00 Aligned_cols=73 Identities=25% Similarity=0.407 Sum_probs=62.4
Q ss_pred eeecCCCCCcccc-cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 214 VLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 214 ~~~~P~l~~~~~~-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.+..|..|.-..- ..+.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus 6 ~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i 79 (80)
T 1bdo_A 6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI 79 (80)
T ss_dssp EEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred EEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEE
Confidence 3444544432221 46678999999999999999999999999999999999999999999999 9999999987
No 52
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.04 E-value=5.2e-11 Score=102.73 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=27.8
Q ss_pred eeeecCCCCCcc----cccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 213 VVLEMPALSPTM----NQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 213 ~~~~~P~l~~~~----~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.++.+|...... ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus 16 ~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i 93 (94)
T 2jku_A 16 ENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDLLVEL 93 (94)
T ss_dssp --------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred EEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCEEEEE
Confidence 345666665543 4699999999999999999999999999999999999999999999999999 9999999876
No 53
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.7e-10 Score=99.35 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=59.7
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+. |..|++|+.|..
T Consensus 25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~ 86 (100)
T 2dn8_A 25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLEL 86 (100)
T ss_dssp CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECC
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEc
Confidence 589999999999999999999999999999999999999999 99999999 999999999964
No 54
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.98 E-value=4.5e-10 Score=129.47 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=60.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|++|+|++||+|++||+||+||+|||.++|+||.+|+|+++++++|+. |.+|++|+.|+
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEEC
Confidence 599999999999999999999999999999999999999999999999999 99999999984
No 55
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=98.96 E-value=2.5e-10 Score=82.93 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=36.6
Q ss_pred cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHh
Q 006594 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368 (639)
Q Consensus 330 ~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~ 368 (639)
.+||+||++|+++|||++.|.|||++|||+++||++|+.
T Consensus 2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 479999999999999999999999999999999999863
No 56
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.96 E-value=9.2e-10 Score=89.90 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=59.1
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|.|.+|++++||.|++||+|++++++|...+|.||.+|+|.++++++|+. +..|++|+.|
T Consensus 13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i 73 (74)
T 2d5d_A 13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL 73 (74)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence 588999999999999999999999999999999999999999999999999 9999999987
No 57
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.96 E-value=1.1e-09 Score=90.48 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=59.2
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|.|.+|++++||.|++||+|++++++|...+|.||++|+|.++++++|+. |..|++|+.|
T Consensus 16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i 76 (77)
T 1dcz_A 16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI 76 (77)
T ss_dssp SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEE
Confidence 588999999999999999999999999999999999999999999999999 9999999987
No 58
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=98.95 E-value=2.2e-10 Score=89.24 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=39.3
Q ss_pred CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370 (639)
Q Consensus 328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~ 370 (639)
.+.+||+||++|+++|||++.|+|||++|||+++||++|++..
T Consensus 7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~~ 49 (58)
T 3rnm_E 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ 49 (58)
T ss_dssp -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhhh
Confidence 4568999999999999999999999999999999999998643
No 59
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=98.94 E-value=3.3e-10 Score=81.87 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=35.6
Q ss_pred CChhHHhhHHHcCCCcccccccCCCCeeeccchHHHH
Q 006594 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (639)
Q Consensus 331 asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~ 367 (639)
+||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6899999999999999999999999999999999885
No 60
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.93 E-value=7.9e-10 Score=134.23 Aligned_cols=61 Identities=30% Similarity=0.350 Sum_probs=59.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.|+|++|+|++||+|++||+||+||+||++++|+||.+|+|.++++++||. |.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEe
Confidence 499999999999999999999999999999999999999999999999999 9999999987
No 61
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=95.27 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=61.8
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
.|.|.+|++++||.|++||+|++|+++|+..+|.||++|+|.++++++|+. |..|++|+.|....
T Consensus 22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEE 86 (99)
T ss_dssp SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCC
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCC
Confidence 589999999999999999999999999999999999999999999999999 99999999997543
No 62
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=98.91 E-value=2.7e-10 Score=82.33 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=34.7
Q ss_pred CChhHHhhHHHcCCCcccccccCCCCeeeccchHHHH
Q 006594 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (639)
Q Consensus 331 asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~ 367 (639)
+||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6899999999999999999999999999999998765
No 63
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.91 E-value=1.4e-10 Score=133.65 Aligned_cols=64 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.|+|++|+|++||.|++||+||+||+||++++|+||.+|+|+++++++||. |.+|++|+.|+.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGEL-VEEGTPLVELDEN 673 (675)
T ss_dssp -----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCC-cCCCCEEEEEecC
Confidence 699999999999999999999999999999999999999999999999999 9999999999643
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.90 E-value=1.2e-09 Score=132.07 Aligned_cols=64 Identities=14% Similarity=0.276 Sum_probs=60.9
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|+.+
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC--
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence 599999999999999999999999999999999999999999999999999 9999999999643
No 65
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=98.85 E-value=9.2e-10 Score=83.12 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=37.7
Q ss_pred ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHh
Q 006594 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368 (639)
Q Consensus 329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~ 368 (639)
..+||+||++|+++|||++.|.|||++|||+++||++|+.
T Consensus 7 ~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 7 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred ccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 4579999999999999999999999999999999999874
No 66
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=98.84 E-value=6.9e-10 Score=84.51 Aligned_cols=40 Identities=35% Similarity=0.542 Sum_probs=37.0
Q ss_pred CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHH
Q 006594 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (639)
Q Consensus 328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~ 367 (639)
...+||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 3468999999999999999999999999999999999764
No 67
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.81 E-value=3.5e-09 Score=122.09 Aligned_cols=61 Identities=30% Similarity=0.397 Sum_probs=59.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i 680 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEF 680 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEE
Confidence 378999999999999999999999999999999999999999999999999 9999999987
No 68
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.75 E-value=9.8e-10 Score=126.51 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~~ 672 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGEL-VEEGTPLVELDE 672 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCC-cCCCCEEEEEec
Confidence 388999999999999999999999999999999999999999999999999 999999999964
No 69
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.72 E-value=8.1e-09 Score=124.99 Aligned_cols=64 Identities=13% Similarity=0.261 Sum_probs=60.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
.|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|..+
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC--
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence 488999999999999999999999999999999999999999999999999 9999999999643
No 70
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.72 E-value=5e-09 Score=82.98 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=38.2
Q ss_pred ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (639)
Q Consensus 329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~ 369 (639)
..+||+||+||+++|||++.|.|||++|||+++||++|+..
T Consensus 5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~ 45 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE 45 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 34799999999999999999999999999999999999863
No 71
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.71 E-value=4.5e-09 Score=83.65 Aligned_cols=41 Identities=37% Similarity=0.577 Sum_probs=38.2
Q ss_pred ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (639)
Q Consensus 329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~ 369 (639)
..+||+||++|+++|||++.|.|||++|||+++||++|+..
T Consensus 10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 34799999999999999999999999999999999999864
No 72
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=82.84 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=38.5
Q ss_pred ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (639)
Q Consensus 329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~ 369 (639)
..++|+||+||+++|||++.|.|||++|||+++||++|+..
T Consensus 16 ~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 16 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp CCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred cccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 45899999999999999999999999999999999999864
No 73
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.68 E-value=1.7e-08 Score=90.04 Aligned_cols=67 Identities=27% Similarity=0.313 Sum_probs=61.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEccccee-----------------------------EEecCCceEEEEEEecCCC
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATV-----------------------------EFESLEEGFLAKILVPEGS 149 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~-----------------------------~i~s~~~G~i~~~~v~~g~ 149 (639)
..|+|.+|+|++||.|++||+|++|++.++.. .|.||++|+|.++.+.+|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 46999999999999999999999999886654 8999999999999999999
Q ss_pred ccccCC-CcEEEEecCCc
Q 006594 150 KDVPVG-QPIAITVEDAD 166 (639)
Q Consensus 150 ~~v~~G-~~l~~i~~~~~ 166 (639)
. |..| ++|+.|.+.+.
T Consensus 88 ~-v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 88 Y-VSASTTELVRVTNLNP 104 (116)
T ss_dssp E-ECTTTSCCEEEECSCT
T ss_pred E-EcCCCcEEEEEECCCe
Confidence 9 9999 99999987554
No 74
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.67 E-value=2.2e-08 Score=91.72 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=55.3
Q ss_pred EEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEE---EecCCCcccc---CCC-cEEEEecCC
Q 006594 103 IAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAITVEDA 165 (639)
Q Consensus 103 v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~---~v~~g~~~v~---~G~-~l~~i~~~~ 165 (639)
|..+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++ ++..|+. |. .|+ .|+.|...+
T Consensus 47 i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 47 VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFKMEISD 116 (136)
T ss_dssp EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEEEEESC
T ss_pred cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEEEEECC
Confidence 444444 99999999999999999999999999999999999 8889999 99 898 999997544
No 75
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.60 E-value=7.4e-09 Score=118.99 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i 161 (639)
.|+|++|+|++||.|++||+||+||+||+..+|+||.+|+|.++++++|+. |..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence 799999999999999999999999999999999999999999999999999 9999999876
No 76
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.56 E-value=2.5e-08 Score=121.00 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=53.9
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~ 162 (639)
.|+|++|+|++||.|++||+||+||+||+..+|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence 699999999999999999999999999999999999999999999999999 99999999874
No 77
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.44 E-value=1.3e-07 Score=84.28 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=59.8
Q ss_pred ccccceeecCCCCccccCCeeeEeecCccee-----------------------------eEecCCCeeEEEEecCCCCc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-----------------------------EFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-----------------------------ei~s~~~G~v~~i~~~~G~~ 276 (639)
.|.|.+|++++||.|++||+|+++++.++.. .|.||++|+|..+.+.+|+.
T Consensus 9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~ 88 (116)
T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY 88 (116)
T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence 5899999999999999999999999987654 89999999999999999999
Q ss_pred cccCC-CeEEEEecCC
Q 006594 277 DVAVG-QPIAITVEDP 291 (639)
Q Consensus 277 ~v~vG-~~l~~i~~~~ 291 (639)
|..| ++|+.|.+..
T Consensus 89 -v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 89 -VSASTTELVRVTNLN 103 (116)
T ss_dssp -ECTTTSCCEEEECSC
T ss_pred -EcCCCcEEEEEECCC
Confidence 9999 9999997643
No 78
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.42 E-value=2.7e-07 Score=84.52 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=54.0
Q ss_pred ccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEE---ecCCCCcccc---CCC-eEEEEec
Q 006594 228 NIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI---LAPEGSKDVA---VGQ-PIAITVE 289 (639)
Q Consensus 228 ~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i---~~~~G~~~v~---vG~-~l~~i~~ 289 (639)
.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++ +++.|+. |. -|+ .|+.|..
T Consensus 46 ~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 46 DVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFKMEI 114 (136)
T ss_dssp SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEEEEE
T ss_pred CcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEEEEE
Confidence 3444444 99999999999999999999999999999999999 8889998 98 887 8888863
No 79
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.40 E-value=6.6e-08 Score=111.16 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=59.2
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i 287 (639)
.|+|++|+|++||.|++||+|++||++|+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence 589999999999999999999999999999999999999999999999999 9999999876
No 80
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.34 E-value=1.9e-07 Score=113.42 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=53.4
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~ 288 (639)
.|+|.+|+|++||.|++||+|++||++|+.++|+||.+|+|.++++++|+. |..|++|+.|.
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence 488999999999999999999999999999999999999999999999999 99999999874
No 81
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.24 E-value=1.3e-06 Score=79.28 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=50.6
Q ss_pred EEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec---CCCccc---cCCC-cEEEEecCC
Q 006594 103 IAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP---EGSKDV---PVGQ-PIAITVEDA 165 (639)
Q Consensus 103 v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~---~g~~~v---~~G~-~l~~i~~~~ 165 (639)
|+.+. .++||+|++||+||+||++|+..+|.||.+|+|.+++.. ..+. | +-|+ -|+.|...+
T Consensus 38 i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 38 VVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp EEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEEESC
T ss_pred ceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEEEECC
Confidence 44443 499999999999999999999999999999999999765 4444 5 5576 888887544
No 82
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.20 E-value=6.5e-07 Score=81.55 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=51.7
Q ss_pred EEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC---cccc---CCC-cEEEEecCC
Q 006594 101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS---KDVP---VGQ-PIAITVEDA 165 (639)
Q Consensus 101 g~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~---~~v~---~G~-~l~~i~~~~ 165 (639)
|.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++ . |. -|+ -|+.|...+
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~~~~ 107 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGL-INSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEEESS
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhh-hccCCCCCceEEEEEECC
Confidence 33555555 99999999999999999999999999999999999866554 4 43 455 788887544
No 83
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.18 E-value=1.5e-06 Score=78.91 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=50.2
Q ss_pred EEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCcc--cc---CCC-cEEEEecCC
Q 006594 103 IAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKD--VP---VGQ-PIAITVEDA 165 (639)
Q Consensus 103 v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~--v~---~G~-~l~~i~~~~ 165 (639)
|+.+. .++||+|++||+||+||++|+..+|.||.+|+|.++....++.+ |. -|+ -|+.|...+
T Consensus 39 i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~ 108 (128)
T 3a7l_A 39 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD 108 (128)
T ss_dssp EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence 44444 49999999999999999999999999999999999987554431 44 465 788887544
No 84
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.99 E-value=3e-06 Score=77.10 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=43.3
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~ 275 (639)
|.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++.+.++
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~ 85 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTG 85 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHH
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhc
Confidence 45666655 99999999999999999999999999999999999866554
No 85
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.97 E-value=6.1e-06 Score=74.82 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=42.7
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~ 276 (639)
|.|+...+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+.++.
T Consensus 37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~ 87 (128)
T 3a7l_A 37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDS 87 (128)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccC
Confidence 44555544 899999999999999999999999999999999997655443
No 86
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.90 E-value=5.6e-06 Score=75.09 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=48.2
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecC---CCCccc---cCCC-eEEEEe
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP---EGSKDV---AVGQ-PIAITV 288 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~---~G~~~v---~vG~-~l~~i~ 288 (639)
|.|+...+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+ ..+. | +-|+ -|+.|.
T Consensus 36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~ 104 (128)
T 1onl_A 36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRLK 104 (128)
T ss_dssp CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEE
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEEE
Confidence 44555544 99999999999999999999999999999999999755 3333 4 3454 666664
No 87
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.70 E-value=0.00016 Score=75.86 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=57.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.+++|++||.|++||+|++|++...
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 469999999999999999999999987421
Q ss_pred -----------------------------------eeEEecCCceEEEEEEecCCCccccCCCc---EEEEecCC
Q 006594 129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVEDA 165 (639)
Q Consensus 129 -----------------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~---l~~i~~~~ 165 (639)
...|+||++|+|.++.+..|+. |..|++ |+.|.+.+
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecCC
Confidence 1459999999999999999999 999998 99987544
No 88
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.63 E-value=6.4e-05 Score=81.49 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=58.6
Q ss_pred ceEEEEEEEe-cCCCeeecCCeEEEEEcc------------------------------------------------cce
Q 006594 99 SQGNIAKWRK-KEGDKIEIGDILCEIETD------------------------------------------------KAT 129 (639)
Q Consensus 99 ~eg~v~~w~v-~~Gd~V~~g~~l~~ietd------------------------------------------------K~~ 129 (639)
..|.|.+++| ++||.|++||+|++|++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999952 124
Q ss_pred eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
..|+||++|+|.++.+.+|+. |..|++|+.|.+.+
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~~~ 242 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMD 242 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCE-ECTTSCSEEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeCCC
Confidence 579999999999999999999 99999999997544
No 89
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.62 E-value=5.7e-05 Score=79.88 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=59.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.+++|++||.|++||+|++|++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999997532
Q ss_pred --------------------------eeEEecCCceEEEEEEecCCCccccC-CCcEEEEecCCc
Q 006594 129 --------------------------TVEFESLEEGFLAKILVPEGSKDVPV-GQPIAITVEDAD 166 (639)
Q Consensus 129 --------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~-G~~l~~i~~~~~ 166 (639)
...|.||++|+|.++.+..|+. |.. |++|+.|.+.+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecCCe
Confidence 2579999999999999999999 999 999999976543
No 90
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.61 E-value=2.2e-05 Score=80.05 Aligned_cols=67 Identities=31% Similarity=0.319 Sum_probs=58.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEccc---------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDK--------------------------------------------------- 127 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK--------------------------------------------------- 127 (639)
..|.|.+++|++||.|++||+|++|++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998742
Q ss_pred --------------------ceeEEecCCceEEEEEEecCCCccccCC--CcEEEEecCCc
Q 006594 128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD 166 (639)
Q Consensus 128 --------------------~~~~i~s~~~G~i~~~~v~~g~~~v~~G--~~l~~i~~~~~ 166 (639)
....|+||++|+|..+.+.+|+. |..| ++|+.|.+.+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecCCc
Confidence 12479999999999999999999 9999 69999976543
No 91
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.56 E-value=8.3e-05 Score=66.88 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=55.5
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCcc--c---cCCC-cEE
Q 006594 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKD--V---PVGQ-PIA 159 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~--v---~~G~-~l~ 159 (639)
..|-+=+.+.. .=|.|+.+.. ++|+.|++||.+|.||++|+..+|.||.+|+|.++.....+.+ | +-|+ =|+
T Consensus 19 ~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ 97 (125)
T 3klr_A 19 GTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLI 97 (125)
T ss_dssp EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCE
T ss_pred EEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEE
Confidence 34444444443 2367777666 7899999999999999999999999999999999977665530 1 1243 466
Q ss_pred EEecC
Q 006594 160 ITVED 164 (639)
Q Consensus 160 ~i~~~ 164 (639)
.|...
T Consensus 98 ki~~~ 102 (125)
T 3klr_A 98 KMTFS 102 (125)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 66543
No 92
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.44 E-value=0.00016 Score=66.28 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=49.1
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~ 150 (639)
..|-+=+.... .=|.|+.+.. ++|+.|++||.+|.||++|+..+|.||.+|+|.++.-...+.
T Consensus 41 ~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~ 104 (143)
T 3mxu_A 41 VTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAES 104 (143)
T ss_dssp EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred EEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhC
Confidence 44555444433 2366766555 789999999999999999999999999999999987766554
No 93
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.37 E-value=0.00018 Score=65.65 Aligned_cols=59 Identities=15% Similarity=0.322 Sum_probs=45.8
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~ 146 (639)
..|-+=+.... .=|.|+.+.. ++|++|++||.+|.||++|+..+|.||.+|+|.++.-.
T Consensus 36 ~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~ 95 (137)
T 3tzu_A 36 VRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA 95 (137)
T ss_dssp EEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred EEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence 44444444333 2366766555 78999999999999999999999999999999988543
No 94
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.27 E-value=0.0001 Score=78.60 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=57.8
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.+++|++||.|++||+|++|++...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999986421
Q ss_pred -------eeEEecCCceEEEEEEecCCCccccCC--CcEEEEecCC
Q 006594 129 -------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDA 165 (639)
Q Consensus 129 -------~~~i~s~~~G~i~~~~v~~g~~~v~~G--~~l~~i~~~~ 165 (639)
...|+||++|+|.++.+..|+. |..| ++|+.|.+.+
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECCS
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecCC
Confidence 2479999999999999999999 9995 8999997644
No 95
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.24 E-value=9.8e-05 Score=75.20 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=56.6
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.+++|++||.|++||+|+++++...
T Consensus 30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~ 109 (277)
T 2f1m_A 30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 109 (277)
T ss_dssp CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999987421
Q ss_pred --------------------eeeEecCCCeeEEEEecCCCCccccCC--CeEEEEecC
Q 006594 255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED 290 (639)
Q Consensus 255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG--~~l~~i~~~ 290 (639)
...|.||++|+|..+.+.+|+. |..| ++|+.|.+.
T Consensus 110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecC
Confidence 2479999999999999999999 9999 699999754
No 96
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.22 E-value=0.00027 Score=74.68 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=57.5
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|+++++...
T Consensus 65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~ 144 (359)
T 3lnn_A 65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE 144 (359)
T ss_dssp CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998642
Q ss_pred -------------------------eeeEecCCCeeEEEEecCCCCccccC-CCeEEEEecC
Q 006594 255 -------------------------TLEFECLEEGYLAKILAPEGSKDVAV-GQPIAITVED 290 (639)
Q Consensus 255 -------------------------~~ei~s~~~G~v~~i~~~~G~~~v~v-G~~l~~i~~~ 290 (639)
...|.||++|+|..+.+..|+. |.. |++|+.|.+.
T Consensus 145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECC
T ss_pred HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecC
Confidence 2469999999999999999999 998 9999999754
No 97
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.20 E-value=0.00028 Score=76.37 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=56.5
Q ss_pred ccccceeec-CCCCccccCCeeeEeecC------------------------------------------------ccee
Q 006594 226 QGNIAKWRK-NEGDKIEVGDVICEIETD------------------------------------------------KATL 256 (639)
Q Consensus 226 ~g~i~~w~v-~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~ 256 (639)
.|.|.+++| ++||.|++||+|+++++. ....
T Consensus 129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~ 208 (413)
T 3ne5_B 129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF 208 (413)
T ss_dssp CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence 589999998 999999999999999952 1245
Q ss_pred eEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
.|.||++|+|.++.+.+|+. |..|++|+.|.+
T Consensus 209 ~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~ 240 (413)
T 3ne5_B 209 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQG 240 (413)
T ss_dssp EEECSSSEEEEECCCCTTCE-ECTTSCSEEEEE
T ss_pred EEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeC
Confidence 79999999999999999999 999999999974
No 98
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.18 E-value=0.00042 Score=62.29 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=42.4
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~ 275 (639)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.-...+
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 66766655 78999999999999999999999999999999999655443
No 99
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.12 E-value=0.00034 Score=73.34 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=56.0
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|+++++...
T Consensus 39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 118 (341)
T 3fpp_A 39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN 118 (341)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 48999999999999999999999998521
Q ss_pred ----------------------------------eeeEecCCCeeEEEEecCCCCccccCCCe---EEEEecC
Q 006594 255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITVED 290 (639)
Q Consensus 255 ----------------------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~---l~~i~~~ 290 (639)
...|.||++|+|..+.+..|+. |..|++ |+.|.+.
T Consensus 119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecC
Confidence 1459999999999999999999 999987 8888643
No 100
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.10 E-value=0.00061 Score=63.17 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=45.4
Q ss_pred eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594 87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146 (639)
Q Consensus 87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~ 146 (639)
..|-+=+.... .=|.|+.+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.-.
T Consensus 46 ~~VGITd~Aq~-~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~ 105 (155)
T 3hgb_A 46 VRVGITDYAQS-ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSD 105 (155)
T ss_dssp EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTH
T ss_pred EEEeeCHHHHH-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 44444444333 2356655544 78999999999999999999999999999999887653
No 101
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.99 E-value=0.00074 Score=61.88 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=41.5
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~ 275 (639)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.+++-+..+
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 56665544 78999999999999999999999999999999998654433
No 102
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.88 E-value=0.00081 Score=61.30 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=39.6
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~ 271 (639)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.+++-
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 56665544 7999999999999999999999999999999999853
No 103
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.77 E-value=0.00047 Score=73.39 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=56.3
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|++|++...
T Consensus 51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~ 130 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ 130 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999987431
Q ss_pred ------eeeEecCCCeeEEEEecCCCCccccCC--CeEEEEecC
Q 006594 255 ------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED 290 (639)
Q Consensus 255 ------~~ei~s~~~G~v~~i~~~~G~~~v~vG--~~l~~i~~~ 290 (639)
...|.||++|+|..+.+..|+. |..| ++|+.|...
T Consensus 131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 131 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECC
T ss_pred HHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecC
Confidence 2479999999999999999999 9995 899999743
No 104
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.76 E-value=9.9e-05 Score=78.24 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=55.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~-------------------------------------------------- 128 (639)
..|.|.+++|++||.|++||+|++|++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 458999999999999999999999987421
Q ss_pred -----------------------------------eeEEecCCceEEEEEEecCCCccccCCCc---EEEEecC
Q 006594 129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVED 164 (639)
Q Consensus 129 -----------------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~---l~~i~~~ 164 (639)
...|+||++|+|.++.+..|+. |..|++ |+.|.+.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~ 191 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVADL 191 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEcCC
Confidence 1249999999999999999999 999998 6666443
No 105
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.53 E-value=0.00052 Score=72.67 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=53.9
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (639)
.|.|.++++++||.|++||+|+++++...
T Consensus 40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 119 (369)
T 4dk0_A 40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT 119 (369)
T ss_dssp CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 48999999999999999999999987531
Q ss_pred ----------------------------------eeeEecCCCeeEEEEecCCCCccccCCCe---EEEEe
Q 006594 255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITV 288 (639)
Q Consensus 255 ----------------------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~---l~~i~ 288 (639)
...|.||++|+|..+.+..|+. |..|++ |+.|.
T Consensus 120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEc
Confidence 1249999999999999999999 999998 65554
No 106
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.51 E-value=0.0022 Score=59.46 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=39.0
Q ss_pred cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA 271 (639)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~ 271 (639)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.-
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 55655433 7899999999999999999999999999999988853
No 107
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.92 E-value=0.026 Score=59.42 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=27.2
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEE
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~ 142 (639)
..+|++||.|++||.||+-. .|-+..+|+|..
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 57999999999999999964 788888888743
No 108
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.87 E-value=0.037 Score=53.07 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=27.6
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEE
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFL 140 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i 140 (639)
..+|++|+.|++||.||+-. .|-+.++|+|
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V 51 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVI 51 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEE
Confidence 56899999999999999875 8999999999
No 109
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=95.50 E-value=0.027 Score=58.99 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=50.4
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
+-+++..++.||.|++||+|++|.. .....+|.||.+|+|..... .-. |..|+.|+.|...
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGVV 329 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEECB
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEecc
Confidence 3466889999999999999999986 35678999999999976554 345 8899999999643
No 110
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=95.21 E-value=0.042 Score=58.02 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=51.7
Q ss_pred EEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594 103 IAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 103 v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
+++..++.||.|++||+|+.|+. .+...+|.||.+|+|..+. .... |..|+.|+.|....
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMEDY 340 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEEC
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeeec
Confidence 67888999999999999999997 4788999999999997664 6667 89999999996543
No 111
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.99 E-value=0.044 Score=58.26 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=49.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc------ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET------DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet------dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
+=|.+..++.||.|++||+|++|-. .....+|.||.+|+|.-... .-. |..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~--~p~-V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFA--SAS-VHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECS--SSE-ECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEee
Confidence 3455899999999999999999986 45678999999999955544 456 999999999864
No 112
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.63 E-value=0.049 Score=57.02 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=50.1
Q ss_pred cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
+-+.+.+++.||.|++||+|++|.. .....+|.||.+|+|..... .-. |..|+.|+.|..
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~ 328 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGV 328 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEEC
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEec
Confidence 3377788999999999999999997 35678999999999987654 344 889999999864
No 113
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=94.17 E-value=0.08 Score=55.85 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=51.0
Q ss_pred cceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
+.+..++.||.|++||+|++|+. .+...+|.||.+|+|..+. .... |..|+.|+.|...
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMED 339 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeee
Confidence 67778899999999999999997 5788999999999998764 5666 8899999998643
No 114
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.02 E-value=0.083 Score=56.10 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=51.0
Q ss_pred cccceeecCCCCccccCCeeeEeec------CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET------DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet------dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
+=|.+.+++.||.|++||+|++|.. .....+|.||.+|+|..... .-. |..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~--~p~-V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFA--SAS-VHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECS--SSE-ECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEee
Confidence 4477789999999999999999998 56778999999999977654 455 899999998864
No 115
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=93.45 E-value=0.054 Score=50.65 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=50.5
Q ss_pred ceEEEEEEEecCCCeeec----CCeEEEEEcccceeEEecCCceEEEEE-------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI------------------------------- 143 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~----g~~l~~ietdK~~~~i~s~~~G~i~~~------------------------------- 143 (639)
-.|+|+.+. ++.|.|-. |+-++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 468998876 78888777 8888877765 57899999999988
Q ss_pred ----EecCCCccccCCCcEEEEe
Q 006594 144 ----LVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 144 ----~v~~g~~~v~~G~~l~~i~ 162 (639)
+|+.||. |+.|++|+.++
T Consensus 95 gF~~~V~~Gd~-V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQR-VKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCE-ECTTCEEEEEC
T ss_pred ccEEEEeCcCE-ECCCCEEEEEC
Confidence 8999999 99999999985
No 116
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=92.95 E-value=0.089 Score=63.36 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=33.8
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecC
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE 147 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~ 147 (639)
..+|++||.|++||+||+. |--+..|-+.++|+|.=-.+.+
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~ 1042 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMID 1042 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCB
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeecc
Confidence 4689999999999999996 7789999999999886433333
No 117
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=92.53 E-value=0.076 Score=49.31 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=49.6
Q ss_pred ceEEEEEEEecCCCeeec----CCeEEEEEcccceeEEecCCceEEEE--------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAK-------------------------------- 142 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~----g~~l~~ietdK~~~~i~s~~~G~i~~-------------------------------- 142 (639)
-.|+|+... ++.|.|-. |+-++...++ ..+.||++|+|..
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 458888864 77888777 8888877765 5899999999987
Q ss_pred ---EEecCCCccccCCCcEEEEe
Q 006594 143 ---ILVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 143 ---~~v~~g~~~v~~G~~l~~i~ 162 (639)
++|++||. |+.||+|+.++
T Consensus 90 gF~~~V~~Gd~-V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQE-VNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCE-ECTTCEEEEEC
T ss_pred ceEEEEcCCCE-EcCCCEEEEEC
Confidence 48999999 99999999985
No 118
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=91.49 E-value=0.082 Score=49.51 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=49.7
Q ss_pred ceEEEEEEEecCCCeeec----CCeEEEEEcccceeEEecCCceEEEEE-------------------------------
Q 006594 99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI------------------------------- 143 (639)
Q Consensus 99 ~eg~v~~w~v~~Gd~V~~----g~~l~~ietdK~~~~i~s~~~G~i~~~------------------------------- 143 (639)
-.|+|+.+ .++.|.|-. |+-++...+ ...+.||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 46999886 778888777 788887665 457899999999988
Q ss_pred ----EecCCCccccCCCcEEEEe
Q 006594 144 ----LVPEGSKDVPVGQPIAITV 162 (639)
Q Consensus 144 ----~v~~g~~~v~~G~~l~~i~ 162 (639)
+|+.||. |+.|++|+.++
T Consensus 95 gF~~~V~~Gd~-V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDR-VEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSE-ECSEEEEEEEC
T ss_pred ccEEEEeCCCE-EcCCCEEEEEC
Confidence 8899999 99999999985
No 119
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=91.29 E-value=0.38 Score=50.06 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=47.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~ 163 (639)
+-+....++.|+.|++||+|+++-. .+...+|.||.+|+|.-.. ..-. |..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence 4455788999999999999999954 4567889999999995554 4445 888888998853
No 120
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=90.69 E-value=0.27 Score=45.95 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=48.9
Q ss_pred ccccceeecCCCCcccc----CCeeeEeecCcceeeEecCCCeeEEEE--------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI-------------------------------- 269 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~ei~s~~~G~v~~i-------------------------------- 269 (639)
.|+|+.+. ++.|.+-. |+-++...++ ..+.||.+|+|..+
T Consensus 20 ~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~g 95 (161)
T 1f3z_A 20 SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEG 95 (161)
T ss_dssp CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTT
T ss_pred CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCc
Confidence 46777766 67888766 8888888876 47899999999988
Q ss_pred ---ecCCCCccccCCCeEEEEe
Q 006594 270 ---LAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 270 ---~~~~G~~~v~vG~~l~~i~ 288 (639)
++++||. |..|++|+.+.
T Consensus 96 F~~~V~~Gd~-V~~G~~L~~~d 116 (161)
T 1f3z_A 96 FKRIAEEGQR-VKVGDTVIEFD 116 (161)
T ss_dssp EEECSCTTCE-ECTTCEEEEEC
T ss_pred cEEEEeCcCE-ECCCCEEEEEC
Confidence 8999999 99999999984
No 121
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=89.51 E-value=0.36 Score=44.72 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=48.3
Q ss_pred ccccceeecCCCCcccc----CCeeeEeecCcceeeEecCCCeeEEE---------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAK--------------------------------- 268 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~ei~s~~~G~v~~--------------------------------- 268 (639)
.|+|+.+. ++.|.+-. |+-++...++ ..+.||.+|+|..
T Consensus 15 ~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g 90 (154)
T 2gpr_A 15 DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG 90 (154)
T ss_dssp SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence 46777764 77888776 8888888876 4899999999997
Q ss_pred --EecCCCCccccCCCeEEEEe
Q 006594 269 --ILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 269 --i~~~~G~~~v~vG~~l~~i~ 288 (639)
+++++||. |..|++|+.+.
T Consensus 91 F~~~V~~Gd~-V~~G~~L~~~d 111 (154)
T 2gpr_A 91 FESFVTQDQE-VNAGDKLVTVD 111 (154)
T ss_dssp EEECCCTTCE-ECTTCEEEEEC
T ss_pred eEEEEcCCCE-EcCCCEEEEEC
Confidence 48999999 99999999884
No 122
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=89.01 E-value=0.46 Score=44.10 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=41.4
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEcccceeE-EecCCceEEEEEEecCC
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVPEG 148 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~-i~s~~~G~i~~~~v~~g 148 (639)
||-.+-..+.+||.|.+||.|+-|.|.|-.+- +.||.+|+|.-+.=-++
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 55566778999999999999999999999987 89999999976654433
No 123
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=87.17 E-value=0.99 Score=46.92 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=47.7
Q ss_pred cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~ 289 (639)
+-+....++.|+.|++||+|+++-. .+...+|.||.+|+|.-.. .... |..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence 3455677889999999999999954 5677899999999997764 4444 788888988853
No 124
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=86.80 E-value=0.41 Score=44.70 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=47.6
Q ss_pred ccccceeecCCCCcccc----CCeeeEeecCcceeeEecCCCeeEEEE--------------------------------
Q 006594 226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI-------------------------------- 269 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~ei~s~~~G~v~~i-------------------------------- 269 (639)
.|+|+.+ .++.|.+-. |+-++...++ ..+.||.+|+|..+
T Consensus 20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g 95 (162)
T 1ax3_A 20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG 95 (162)
T ss_dssp SEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred ceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence 4777776 567787766 7888877763 47899999999988
Q ss_pred ---ecCCCCccccCCCeEEEEe
Q 006594 270 ---LAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 270 ---~~~~G~~~v~vG~~l~~i~ 288 (639)
++++||. |..|++|+.+.
T Consensus 96 F~~~V~~Gd~-V~~G~~L~~~d 116 (162)
T 1ax3_A 96 FTSFVSEGDR-VEPGQKLLEVD 116 (162)
T ss_dssp EEESCCCCSE-ECSEEEEEEEC
T ss_pred cEEEEeCCCE-EcCCCEEEEEC
Confidence 8899999 99999999884
No 125
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=86.45 E-value=0.58 Score=44.77 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=25.3
Q ss_pred eeecCCCCccccCCeeeEeecCcceeeEecCCCeeEE
Q 006594 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA 267 (639)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~ 267 (639)
.++|++|+.|++||.||+-. .|-+..+|+|.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 57899999999999999855 56677777764
No 126
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=83.74 E-value=0.91 Score=43.50 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=38.2
Q ss_pred EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (639)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~ 150 (639)
..+|++||.|++|++||+. |..+..|-+.++|+|.=-.+.+|.+
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 5799999999999999986 8999999999999997666666654
No 127
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=81.78 E-value=1.7 Score=40.26 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=39.1
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcceee-EecCCCeeEEEEe
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLE-FECLEEGYLAKIL 270 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~e-i~s~~~G~v~~i~ 270 (639)
+|--+-..+.+|+.|.+||.|+-|.|-|-.+- +.||.+|+|.-+.
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 46666677899999999999999999999874 8999999997764
No 128
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=78.58 E-value=1.8 Score=45.51 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=24.6
Q ss_pred ceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEE
Q 006594 230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA 267 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~ 267 (639)
..++|++|+.|++||.||+-. .|-+..+|+|.
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 468999999999999999955 45555555553
No 129
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=77.21 E-value=2.4 Score=40.57 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=38.5
Q ss_pred eeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~ 276 (639)
.++|++|+.|++|++||+. |..+..|-+..+|+|.---+-+|-+
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 5789999999999999977 7999999999999998876666654
No 130
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=77.07 E-value=11 Score=41.69 Aligned_cols=33 Identities=3% Similarity=0.048 Sum_probs=29.9
Q ss_pred EeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 601 VTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 601 r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
+-.|.|++.||-...|...+-.||+.+++.|-.
T Consensus 484 ~g~L~l~~~yn~a~~~~e~v~~~l~~v~~~L~~ 516 (519)
T 3fot_A 484 RDASTLNIIYNDANYTEAEVQKYLQSIVEFMLA 516 (519)
T ss_dssp TTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999998864
No 131
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=67.28 E-value=1.3e+02 Score=31.76 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=24.7
Q ss_pred EEEEEecccccChHHHHHHHHHHHHHH
Q 006594 605 NLTLSADHRVFEGKVGGAFFSALCSNF 631 (639)
Q Consensus 605 ~lslt~DHRviDG~~aa~Fl~~l~~~L 631 (639)
-|-|++||-++||.-...|+++|....
T Consensus 135 ~l~l~~HH~i~Dg~S~~~l~~~l~~~Y 161 (493)
T 4hvm_A 135 VLGVVAHQMLLDARSRYMVLGAVWQAY 161 (493)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecchhhccHHHHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 132
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=65.91 E-value=8.3 Score=36.47 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.5
Q ss_pred EEecCCCCccccCCCeEEEEe
Q 006594 268 KILAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 268 ~i~~~~G~~~v~vG~~l~~i~ 288 (639)
+.++++||. |..|++|+.+.
T Consensus 119 ~~~V~~Gd~-Vk~Gd~L~~fD 138 (183)
T 3our_B 119 TRIAEEGQT-VKAGDTVIEFD 138 (183)
T ss_dssp EECSCTTCE-ECTTCEEEEEC
T ss_pred eEEEeCcCE-EcCCCEEEEEC
Confidence 458999999 99999999984
No 133
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=56.10 E-value=4.5 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.0
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEccc
Q 006594 100 QGNIAKWRKKEGDKIEIGDILCEIETDK 127 (639)
Q Consensus 100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK 127 (639)
+|+=-+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 4666789999999999999999997654
No 134
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=53.27 E-value=13 Score=38.76 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=40.4
Q ss_pred eecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594 232 WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (639)
Q Consensus 232 w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~ 290 (639)
-.++.|+.|++||+|+++- | .+|.+|++|.+.- .. .-. |..|+.++.+...
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~-V~~G~~~~~i~~~ 329 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRH-VAIGQRAALMVCE 329 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTT-CCTTSEEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCC-CCCCcEEEEEEEE
Confidence 4468999999999999995 3 6889999998644 44 455 9999988887543
No 135
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=52.55 E-value=10 Score=39.59 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=39.4
Q ss_pred EecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594 107 RKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (639)
Q Consensus 107 ~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~ 164 (639)
.++.|+.|++||+|+++- | .+|.+|++|.+.- .. .-. |..|+.++.|...
T Consensus 280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~-V~~G~~~~~i~~~ 329 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRH-VAIGQRAALMVCE 329 (350)
T ss_dssp TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTT-CCTTSEEEEEEEE
T ss_pred cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCC-CCCCcEEEEEEEE
Confidence 367899999999999983 4 7889999998633 44 556 9999988888543
No 136
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=52.55 E-value=10 Score=46.13 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=34.9
Q ss_pred ceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594 230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~ 276 (639)
..++|++||.|++||+||+. |--+.-|-+..+|+|.-.-+-+|-+
T Consensus 1001 s~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t 1045 (1407)
T 3lu0_D 1001 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 1045 (1407)
T ss_dssp CEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTT
T ss_pred CEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCce
Confidence 35789999999999999988 4667788888888886555444433
No 137
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=49.42 E-value=90 Score=31.97 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC---------------
Q 006594 444 DPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK--------------- 508 (639)
Q Consensus 444 t~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~--------------- 508 (639)
..|.++.++. ++|++.+++-|.+.+|.++ ...+.. .+-+|+.++.-.
T Consensus 224 ~~l~~~a~~~------~~t~~~~l~aa~~~~l~r~-----~~~~~~-------~v~~g~~~~~R~~~~~~~~~~~~~~~v 285 (422)
T 1q9j_A 224 SDLMAFGREH------RLSLNAVVAAAILLTEWQL-----RNTPHV-------PIPYVYPVDLRFVLAPPVAPTEATNLL 285 (422)
T ss_dssp HHHHHHHTTT------TCCHHHHHHHHHHHHHHHH-----HTCSSC-------CEEEEEEEETTTTSSSCCCTTTBSCCE
T ss_pred HHHHHHHHHh------CCCHHHHHHHHHHHHHHhc-----ccCCCc-------eEEEeeeeecccccCCCCChhhhhhhh
Q ss_pred CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCC------CCCCCCCe-------EEEEeCCCCCccceeeccCCCcce
Q 006594 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLA------PHEFQGGT-------FSISNLGMFPVDQFCAIINPPQAG 575 (639)
Q Consensus 509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~------~~d~~ggt-------ftISnlG~~g~~~~~pii~~p~~a 575 (639)
|.++-.+.-....++.++.+++++....+....-. .+++.... +.++|++........+-+......
T Consensus 286 G~f~n~lp~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~pl~~~~~n~~~~~~~~~~~~~~~~~~~ 365 (422)
T 1q9j_A 286 GAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIK 365 (422)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCSSSCCCEEEECCCCCCSCCCCTTCEEEEEE
T ss_pred eeeeeeeeccCCCCHHHHHHHHHHHHHHHHhcCeeeecccchHHHhcccCCCCCceEEEecCCcCCCCCCCCCceeEeee
Q ss_pred EEEe-cCceEEEEE-eeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 576 ILAV-GRGNQVVEP-VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 576 il~v-G~~~~~~~~-~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
.... ..-..-... +...+| .+.+.+ ||.. ..+.++++.|..+|+.
T Consensus 366 ~~~~~~~~~~l~~~~~~~~~~--------~l~~~~-y~~~----~~~~~l~~~~~~~L~~ 412 (422)
T 1q9j_A 366 GQFYCSISVPLDLYSCAVYAG--------QLIIEH-HGHI----AEPGKSLEAIRSLLCT 412 (422)
T ss_dssp EEECCBSSCCCCEEEEEEETT--------EEEEEE-ESSC----SSHHHHHHHHHHHHHH
T ss_pred cccccCCCCCceEEEEEeeCC--------eEEEEE-ecCc----cchHHHHHHHHHHHHH
No 138
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=44.72 E-value=14 Score=37.43 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|++++|+.|++||+|++|+-.
T Consensus 71 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 71 YRV-LDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEE-EEECCTTCEECTTCEEEEEEEE
T ss_pred EEE-EEEcCCCCEecCCcEEEEEEEe
Confidence 455 9999999999999999999853
No 139
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=42.71 E-value=19 Score=38.54 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594 603 KMNLTLSADHRVFEGKVGGAFFSALCSNFS 632 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~aa~Fl~~l~~~Le 632 (639)
-+-|+++++|.++||.-+..|++.+.++..
T Consensus 156 G~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 185 (453)
T 2xr7_A 156 GISIGFTNHHVAGDGATIVKFVRAWALLNK 185 (453)
T ss_dssp EEEEEEEECTTTCCSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeeeeeeechhHHHHHHHHHHHHhh
Confidence 377899999999999999999999999887
No 140
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=42.58 E-value=13 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|++++||.|++||+|++|+-.
T Consensus 71 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 71 LLS-KFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp CEE-EESCCTTCEEESCEEEEEEEEE
T ss_pred CEE-EEEcCCCCCcCCCCEEEEEEEc
Confidence 454 8999999999999999999853
No 141
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=42.13 E-value=13 Score=37.61 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=22.0
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|++++||.|++||+|++|+-.
T Consensus 72 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 72 TAF-TPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp CEE-EESSCTTCEECTTCEEEEEEEE
T ss_pred EEE-EEEcCCCCCccCCCEEEEEEEc
Confidence 455 8999999999999999999853
No 142
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=42.08 E-value=14 Score=37.61 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|++++|+.|++||+|++|+-.
T Consensus 84 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 84 VKY-EIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EEE-EECCCTTCEECSSCEEEEEEEE
T ss_pred eEE-EEEeCCCCEeeCCCEEEEEEEC
Confidence 455 9999999999999999999853
No 143
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=41.99 E-value=14 Score=37.58 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.0
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|++++|+.|++||+|++|+-.
T Consensus 75 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 75 IQI-TWLYSDAQKVPANARIFELKGN 99 (287)
T ss_dssp CEE-EESSCTTCEECTTCEEEEEEEE
T ss_pred eEE-EEEeCCCCEeeCCCEEEEEEEc
Confidence 455 8999999999999999999853
No 144
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=41.78 E-value=25 Score=37.83 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=37.0
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecCCC
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
+...|...+|.|+.+|+|..| +.+.||. |..|+||++|-...+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~-v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDR-VQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCE-ECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCE-ECCCCeEEEEEcCCc
Confidence 566788899999999999887 8889999 999999999975543
No 145
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=41.56 E-value=19 Score=38.20 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=27.0
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFS 632 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le 632 (639)
+-|+++++|.++||.-+..|++.+.+++.
T Consensus 152 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r 180 (421)
T 2bgh_A 152 TAIGVNLSHKIADVLSLATFLNAWTATCR 180 (421)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeeEEechHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999998875
No 146
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.15 E-value=24 Score=37.75 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=36.2
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecCCC
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVEDPG 292 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~~ 292 (639)
+-..+ ..+|.|+.+|+|..| +.+.||. |..|+||++|-...+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~-v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDR-VERGEALALVYHRRR 394 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCE-ECTTSEEEEEEECSS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCE-eCCCCeEEEEEeCCc
Confidence 56677 899999999999887 8889999 999999999975543
No 147
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=40.76 E-value=21 Score=38.12 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=28.0
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594 603 KMNLTLSADHRVFEGKVGGAFFSALCSNFS 632 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~aa~Fl~~l~~~Le 632 (639)
-+-|+++++|.++||.-+..|++.+.+++.
T Consensus 161 G~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r 190 (454)
T 2e1v_A 161 GIAIGITNHHCLGDASTRFCFLKAWTSIAR 190 (454)
T ss_dssp EEEEEEEECGGGCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeeeeecchhHHHHHHHHHHHHhc
Confidence 377899999999999999999999999887
No 148
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=40.40 E-value=18 Score=36.33 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.2
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++| +|.+++|+.|.+|++|++|+..
T Consensus 58 ~~v-~~~~~eG~~v~~g~~~~~v~G~ 82 (273)
T 2b7n_A 58 IEC-VQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp CEE-EEECCTTCEECTTCEEEEEEEE
T ss_pred cEE-EEEcCCCCCcCCCCEEEEEEec
Confidence 565 8999999999999999999854
No 149
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=39.72 E-value=21 Score=37.96 Aligned_cols=31 Identities=16% Similarity=0.182 Sum_probs=28.0
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594 603 KMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633 (639)
Q Consensus 603 ~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~ 633 (639)
-+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 147 G~~lg~~~~H~v~Dg~g~~~Fl~awa~~~rg 177 (451)
T 2rkv_A 147 GLILTVNGQHGAMDMVGQDAVIRLLSKACRN 177 (451)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHT
T ss_pred ceeeeeeehhccccHHHHHHHHHHHHHHhcC
Confidence 3778999999999999999999999998764
No 150
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=39.28 E-value=16 Score=37.30 Aligned_cols=24 Identities=29% Similarity=0.895 Sum_probs=21.3
Q ss_pred EEEEEEecCCCeeecCCeEEEEEcc
Q 006594 102 NIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 102 ~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+| +|.+++|+.|++||+|++|+-.
T Consensus 87 ~v-~~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 87 EV-DWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp EE-EESSCTTCEECTTCEEEEEEEE
T ss_pred EE-EEEcCCCCEecCCCEEEEEEec
Confidence 44 8999999999999999999854
No 151
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=38.34 E-value=17 Score=37.52 Aligned_cols=25 Identities=24% Similarity=0.648 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|.+++|+.|.+||+|++|+-.
T Consensus 108 ~~v-~~~~~dG~~v~~g~~l~~v~G~ 132 (320)
T 3paj_A 108 VSI-EWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp CEE-EESSCTTCEECTTCEEEEEEEE
T ss_pred eEE-EEEeCCCCEecCCCEEEEEEec
Confidence 444 8999999999999999999853
No 152
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=37.12 E-value=18 Score=36.83 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=22.2
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
.+| +|.+++|+.|.+|++|++|+..
T Consensus 85 ~~v-~~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 85 VRL-TWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp SEE-EESCCTTCEECTTCEEEEEEEE
T ss_pred eEE-EEEcCCCCEecCCCEEEEEEEc
Confidence 455 9999999999999999999864
No 153
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=36.98 E-value=26 Score=37.36 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=27.0
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594 604 MNLTLSADHRVFEGKVGGAFFSALCSNFS 632 (639)
Q Consensus 604 m~lslt~DHRviDG~~aa~Fl~~l~~~Le 632 (639)
+-|+++++|.++||.-...|++.+.+.+.
T Consensus 150 ~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r 178 (439)
T 4g22_A 150 VSLGVGMRHHAADGFSGLHFINSWSDMAR 178 (439)
T ss_dssp EEEEEEECTTTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeeeccCcHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999875
No 154
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=36.89 E-value=29 Score=37.33 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=34.6
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEe
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITV 288 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~ 288 (639)
+...+...+|.|+.+|+|..| +++.||. |..|+||++|-
T Consensus 332 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~-V~~g~~l~~i~ 401 (436)
T 3h5q_A 332 LPQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDK-VEEGESLLTIH 401 (436)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCE-ECTTSEEEEEE
T ss_pred cCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCE-eCCCCeEEEEe
Confidence 455677889999999999988 7889999 99999999998
No 155
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=35.45 E-value=23 Score=38.12 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=36.4
Q ss_pred eecCcceeeEecCCCeeEEEE-------------------------------ecCCCCccccCCCeEEEEecCC
Q 006594 249 IETDKATLEFECLEEGYLAKI-------------------------------LAPEGSKDVAVGQPIAITVEDP 291 (639)
Q Consensus 249 vetdK~~~ei~s~~~G~v~~i-------------------------------~~~~G~~~v~vG~~l~~i~~~~ 291 (639)
+...|...+|.|+.+|+|..| +.+.||. |..|+||++|-...
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~-v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ-VDGQRPLAVIHAKD 406 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCE-EBTTBCSEEEEESS
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCE-ECCCCeEEEEecCC
Confidence 556788899999999999888 8889999 99999999997543
No 156
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=35.04 E-value=33 Score=37.28 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.9
Q ss_pred EEcccceeEEecCCceEE-----------------------------EEEEecCCCccccCCCcEEEEecCCc
Q 006594 123 IETDKATVEFESLEEGFL-----------------------------AKILVPEGSKDVPVGQPIAITVEDAD 166 (639)
Q Consensus 123 ietdK~~~~i~s~~~G~i-----------------------------~~~~v~~g~~~v~~G~~l~~i~~~~~ 166 (639)
+-.-|...+|.|+.+|+| ..++.+.||. |..|++|++|..+.+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~-V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQR-LRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCE-ECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCE-ECCCCeEEEEEcCCh
Confidence 334667788899999998 4678899999 999999999976543
No 157
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=33.69 E-value=20 Score=38.53 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=18.8
Q ss_pred EEEEecCCCeeecCCeEEEEEcc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
+.++++.||+|++||+|++|=.+
T Consensus 381 i~l~~~~G~~V~~g~~l~~i~~~ 403 (436)
T 3h5q_A 381 IVLNKKIGDKVEEGESLLTIHSN 403 (436)
T ss_dssp EEESCCTTCEECTTSEEEEEEES
T ss_pred eEEecCCcCEeCCCCeEEEEeCC
Confidence 47889999999999999987633
No 158
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=32.48 E-value=21 Score=36.39 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.9
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g~~l~~ietd 126 (639)
++| +|.+++|+.|.+||+|++|+..
T Consensus 71 ~~v-~~~~~dG~~v~~g~~l~~v~G~ 95 (299)
T 2jbm_A 71 CQV-SWFLPEGSKLVPVARVAEVRGP 95 (299)
T ss_dssp CEE-EESSCTTCEECSSEEEEEEEEE
T ss_pred CEE-EEEcCCCCCCCCCCEEEEEEEc
Confidence 565 8999999999999999999853
No 159
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=31.81 E-value=21 Score=36.17 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.9
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|++++|+.|++||+|++++-
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 72 RVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCcEEEEEEE
Confidence 46799999999999999999884
No 160
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=31.39 E-value=20 Score=36.35 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.7
Q ss_pred ceeecCCCCccccCCeeeEeec
Q 006594 230 AKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (639)
++|++++|+.|++||+|++++.
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 5899999999999999999984
No 161
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=31.20 E-value=20 Score=36.31 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.0
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|++++|+.|++||+|++++-
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEEE
Confidence 36799999999999999999984
No 162
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=30.52 E-value=22 Score=36.29 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=19.8
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|++++|+.|+.||+|++++.
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEEE
Confidence 35899999999999999999883
No 163
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=29.95 E-value=19 Score=36.43 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.8
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|++++|+.|++||+|++++.
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEE
Confidence 46789999999999999999884
No 164
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.92 E-value=28 Score=37.22 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=19.5
Q ss_pred EEEEecCCCeeecCCeEEEEEccc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETDK 127 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietdK 127 (639)
+.++++.||+|++||+|++|=+++
T Consensus 370 i~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 370 VYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp EEESCCTTCEECTTSEEEEEEECS
T ss_pred eeeeccCCCEeCCCCeEEEEEeCC
Confidence 478889999999999999886653
No 165
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=29.40 E-value=29 Score=37.29 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEecCCCeeecCCeEEEEEccc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETDK 127 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietdK 127 (639)
+.++++.||+|++||+|++|=+++
T Consensus 378 i~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 378 IVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EEESCCTTCEECTTCEEEEEEESS
T ss_pred eeEeccCCCEECCCCeEEEEEcCC
Confidence 478888999999999998886653
No 166
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=29.21 E-value=23 Score=36.12 Aligned_cols=22 Identities=32% Similarity=0.934 Sum_probs=19.5
Q ss_pred ceeecCCCCccccCCeeeEeec
Q 006594 230 AKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (639)
++|++++|+.|..||+|++|+.
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEe
Confidence 5799999999999999999983
No 167
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=28.84 E-value=5.3e+02 Score=31.18 Aligned_cols=67 Identities=9% Similarity=0.156 Sum_probs=44.2
Q ss_pred CcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecC-----C-----Ce---EEeeee-cCCcCCHHH
Q 006594 460 KVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATE-----K-----GL---MTPIVR-NADQKSISA 525 (639)
Q Consensus 460 kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~-----~-----gl---~~pvI~-~a~~~sl~e 525 (639)
++|++.+++-|.+..|.++ .+.+ ++-+|+.++.- + |. ++|+-- -....++.+
T Consensus 251 ~~T~~~vllaa~a~~L~r~-------tg~~-------dvv~G~pvsgR~~~~~~~~~~vG~fvntlplr~~~~~~~s~~~ 316 (1304)
T 2vsq_A 251 HTTLSTALQAVWSVLISRY-------QQSG-------DLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNG 316 (1304)
T ss_dssp TCCHHHHHHHHHHHHHHHH-------HTCS-------EEEEEEEECCCCTTSTTGGGCCSSCCEEEEEEEECCTTCBHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-------cCCC-------CEEEEEEeCCCCccchhhhcccccceeEEEEEecCCCCCcHHH
Confidence 7899999999999999875 2322 35566666421 1 32 334333 345679999
Q ss_pred HHHHHHHHHHHHHcC
Q 006594 526 ISMEVKELAEKARAG 540 (639)
Q Consensus 526 i~~~~~~l~~~ar~g 540 (639)
+.+++++....+...
T Consensus 317 ll~~v~~~~~~a~~h 331 (1304)
T 2vsq_A 317 LLKRLQEQSLQSEPH 331 (1304)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhc
Confidence 999988876665544
No 168
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=28.72 E-value=25 Score=35.24 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=17.8
Q ss_pred ceeecCCCCccccCCeeeEeec
Q 006594 230 AKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vet 251 (639)
++|.+++|+.|..|++|++|+.
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 4688888888888888888873
No 169
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=27.66 E-value=25 Score=36.18 Aligned_cols=23 Identities=17% Similarity=0.645 Sum_probs=19.8
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|.+++|+.|..||+|++|+.
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 45799999999999999999883
No 170
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=27.35 E-value=34 Score=37.19 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.5
Q ss_pred EEEEecCCCeeecCCeEEEEEccc
Q 006594 104 AKWRKKEGDKIEIGDILCEIETDK 127 (639)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~ietdK 127 (639)
+.++++.||+|++||+|++|=+++
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEESS
T ss_pred eEEEccCCCEECCCCeEEEEEcCC
Confidence 589999999999999999997653
No 171
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=27.20 E-value=26 Score=35.66 Aligned_cols=23 Identities=22% Similarity=0.588 Sum_probs=19.6
Q ss_pred cceeecCCCCccccCCeeeEeec
Q 006594 229 IAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
-++|.+++|+.|..|++|++|+.
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 46789999999999999998884
No 172
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=26.59 E-value=25 Score=33.13 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.6
Q ss_pred EecCCCccccCCCcEEEEec
Q 006594 144 LVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 144 ~v~~g~~~v~~G~~l~~i~~ 163 (639)
.|+.||. |+.||+|+.+..
T Consensus 86 ~V~~G~~-V~~Gq~IG~vG~ 104 (182)
T 3it5_A 86 QVSNGQQ-VSADTKLGVYAG 104 (182)
T ss_dssp CCCTTCE-ECTTCEEEEECS
T ss_pred ccCCCCE-EcCCCEEEeecC
Confidence 3777777 777777777764
No 173
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=24.44 E-value=35 Score=36.73 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=24.5
Q ss_pred ccccceeecCCCCccccCCeeeEeecCcc
Q 006594 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA 254 (639)
Q Consensus 226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~ 254 (639)
.+--+.++++.||+|++||+|++|-+++-
T Consensus 379 ~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 379 YSVGFTDMARLGDQVDGQRPLAVIHAKDE 407 (440)
T ss_dssp SSCEEESCCCTTCEEBTTBCSEEEEESSH
T ss_pred cCcCeeEeccCCCEECCCCeEEEEecCCH
Confidence 34457899999999999999999987653
No 174
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=23.91 E-value=29 Score=35.31 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=17.2
Q ss_pred ceeecCCCCccccCCeeeEee
Q 006594 230 AKWRKNEGDKIEVGDVICEIE 250 (639)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~ve 250 (639)
++|.+++|+.|..||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEE
Confidence 468888888888888888887
No 175
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=23.25 E-value=6.6e+02 Score=26.29 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecC------C--C---eEE
Q 006594 444 DPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATE------K--G---LMT 512 (639)
Q Consensus 444 t~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~------~--g---l~~ 512 (639)
..|.++.++. ++|++.+++-|.+.+|.++- +. +++-+|+.+..- + | -++
T Consensus 316 ~~l~~~a~~~------~~T~~~~l~aa~a~~L~~~~-------~~-------~dv~~g~~~~gR~~~~~~~~vG~f~n~l 375 (520)
T 2jgp_A 316 EGLHQLAQAT------GTTLYMVLLAAYNVLLAKYA-------GQ-------EDIIVGTPITGRSHADLEPIVGMFVNTL 375 (520)
T ss_dssp HHHHHHHHHH------TCCHHHHHHHHHHHHHHHHH-------TC-------SCEEEEEEECCCCSGGGTTCCSCCCEEE
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHHHHHhc-------CC-------CCeEEEeccCCCCchhhhccEEeeeeee
Confidence 3455555555 79999999999999998753 22 234456655421 1 3 234
Q ss_pred eeeec-CCcCCHHHHHHHHHHHHHHHHc
Q 006594 513 PIVRN-ADQKSISAISMEVKELAEKARA 539 (639)
Q Consensus 513 pvI~~-a~~~sl~ei~~~~~~l~~~ar~ 539 (639)
|+--+ ....++.++.+++++....+..
T Consensus 376 plr~~~~~~~~~~~~l~~v~~~~~~~~~ 403 (520)
T 2jgp_A 376 AMRNKPQREKTFSEFLQEVKQNALDAYG 403 (520)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHHHHHHH
T ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44333 3466899999998876655544
No 176
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=23.24 E-value=19 Score=29.58 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.5
Q ss_pred eecCCCCccccCCeeeE
Q 006594 232 WRKNEGDKIEVGDVICE 248 (639)
Q Consensus 232 w~v~~Gd~V~~gd~l~~ 248 (639)
++|++||.|++||.|.+
T Consensus 67 l~V~eGd~V~~G~~Ltd 83 (84)
T 2lmc_B 67 LNVFEGERVERGDVISD 83 (84)
T ss_dssp CSSCTTEEECBSCSSBC
T ss_pred eEeCCCCEECCCCCccC
Confidence 47899999999998863
No 177
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=22.16 E-value=37 Score=34.42 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.0
Q ss_pred EEEEEEEecCCCeeecC------CeEEEEEcc
Q 006594 101 GNIAKWRKKEGDKIEIG------DILCEIETD 126 (639)
Q Consensus 101 g~v~~w~v~~Gd~V~~g------~~l~~ietd 126 (639)
++| +|.+++|+.|..| ++|++|+-.
T Consensus 67 ~~v-~~~~~eG~~v~~g~~~~~~~~l~~v~G~ 97 (294)
T 3c2e_A 67 LQV-EWLFKEGSFLEPSKNDSGKIVVAKITGP 97 (294)
T ss_dssp CEE-EESSCTTCEECGGGSSSSCEEEEEEEEE
T ss_pred CEE-EEEeCCCCEeCCCCCCCCCcEEEEEEEc
Confidence 555 8999999999999 999999853
No 178
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=21.39 E-value=1.6e+02 Score=23.10 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=32.0
Q ss_pred CCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhh
Q 006594 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKN 477 (639)
Q Consensus 430 ~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~ 477 (639)
+....|++...-++-+-++...+.+ +.|++.++++++.+++.+
T Consensus 17 r~~~kf~LRlP~eL~~~L~~~A~~~-----grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 17 RTADKFVVRLPEGMREQIAEVARSH-----HRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp TTSEEEEEECCTTHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHH
T ss_pred ccCCceEEECCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHH
Confidence 5677888887776655554444432 689999999999999975
No 179
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=20.83 E-value=40 Score=33.27 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=10.6
Q ss_pred EecCCCccccCCCcEEEEec
Q 006594 144 LVPEGSKDVPVGQPIAITVE 163 (639)
Q Consensus 144 ~v~~g~~~v~~G~~l~~i~~ 163 (639)
.|..|+. |..||+|+.+..
T Consensus 136 ~Vk~Gd~-V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 136 SVEQGDK-VKQNQVIGKSGK 154 (245)
T ss_dssp SCCTTCE-ECTTCEEEECBC
T ss_pred ccCCCCE-ECCCCEEEEeCC
Confidence 3555555 555555555543
No 180
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=20.83 E-value=37 Score=31.91 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=20.5
Q ss_pred cccceeecCCCCccccCCeeeEeec
Q 006594 227 GNIAKWRKNEGDKIEVGDVICEIET 251 (639)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet 251 (639)
+-+.++.|++||.|++||+|..+-.
T Consensus 80 ~HL~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 80 YHMDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp ESEESCCCCTTCEECTTCEEEEECS
T ss_pred EcCCccccCCCCEEcCCCEEEeecC
Confidence 3344677999999999999999874
No 181
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=20.13 E-value=44 Score=33.85 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=17.3
Q ss_pred EEecCCCccccCCCcEEEEecCC
Q 006594 143 ILVPEGSKDVPVGQPIAITVEDA 165 (639)
Q Consensus 143 ~~v~~g~~~v~~G~~l~~i~~~~ 165 (639)
+.|++|+. |+.||+|+.+...+
T Consensus 239 i~Vk~Gq~-V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGDK-VKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTCE-ECTTCEEEECCCCS
T ss_pred cccCCcCE-ECCCCEEEEECCCC
Confidence 56888888 88888888886544
Done!