Query 006595
Match_columns 639
No_of_seqs 155 out of 312
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 11:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03110 SBP: SBP domain; Int 100.0 1.1E-37 2.4E-42 265.4 -2.0 78 172-249 1-78 (79)
2 PF10866 DUF2704: Protein of u 75.6 2.4 5.2E-05 41.9 2.9 31 585-615 122-159 (168)
3 cd02969 PRX_like1 Peroxiredoxi 51.5 22 0.00047 33.1 4.2 45 566-612 117-169 (171)
4 PF14901 Jiv90: Cleavage induc 38.4 14 0.00031 33.8 0.9 18 210-227 26-43 (94)
5 PRK00241 nudC NADH pyrophospha 34.8 13 0.00029 38.3 0.1 37 185-222 92-128 (256)
6 PF09297 zf-NADH-PPase: NADH p 32.5 14 0.0003 26.8 -0.1 31 190-221 1-31 (32)
7 PF15306 LIN37: LIN37 32.0 33 0.00073 32.7 2.3 31 571-601 16-50 (148)
8 COG2816 NPY1 NTP pyrophosphohy 31.6 16 0.00034 39.0 0.0 35 186-221 105-139 (279)
9 PRK07217 replication factor A; 28.5 33 0.00072 37.1 1.8 69 126-202 143-212 (311)
10 PF10915 DUF2709: Protein of u 22.3 58 0.0013 33.8 2.0 27 574-603 95-121 (238)
11 KOG4846 Nuclear receptor [Sign 20.4 32 0.0007 39.0 -0.1 48 168-218 130-192 (538)
No 1
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []. Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
Probab=100.00 E-value=1.1e-37 Score=265.36 Aligned_cols=78 Identities=65% Similarity=1.119 Sum_probs=63.1
Q ss_pred ccccCCCchhhcccchhhcccccchhhcccceeeeCCchhhhhhhhccccCCCccccccchHHHHHHHHHHhhccCCC
Q 006595 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 249 (639)
Q Consensus 172 ~CQVdGC~adLs~~K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~Hn~RRRk~qp 249 (639)
+||||||++||+.+|.||+||||||.|+||++|+++|+.+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus 1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~ 78 (79)
T PF03110_consen 1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ 78 (79)
T ss_dssp C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999865
No 2
>PF10866 DUF2704: Protein of unknown function (DUF2704); InterPro: IPR022594 This group of viral proteins has no known function.
Probab=75.64 E-value=2.4 Score=41.92 Aligned_cols=31 Identities=32% Similarity=0.762 Sum_probs=25.9
Q ss_pred hhhHHHHHHhhhcCCcc-------ccccccCCceEEee
Q 006595 585 GTLRKEIYNWLSNSPSE-------MESYIRPGCVILSL 615 (639)
Q Consensus 585 ~~LR~QIlnWLShsPtd-------mESYIRPGCiVLTI 615 (639)
.++..+|+|-|++.=+| --+||.|.|||||.
T Consensus 122 ~T~kn~vLnVlnn~L~d~~~~~d~~~~yikpnciv~tf 159 (168)
T PF10866_consen 122 NTFKNAVLNVLNNELSDEANEYDTSAGYIKPNCIVLTF 159 (168)
T ss_pred hHHHHHHHHHHhhhccccccccccccCccCCCeEEEee
Confidence 46788999999887763 46899999999996
No 3
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=51.48 E-value=22 Score=33.11 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=34.6
Q ss_pred CCCCceEEEecCCCCCC--------CChhhHHHHHHhhhcCCccccccccCCceE
Q 006595 566 DCTGRIIFKLFDKDPSQ--------FPGTLRKEIYNWLSNSPSEMESYIRPGCVI 612 (639)
Q Consensus 566 ~RTgRIvFKLF~K~Psd--------fP~~LR~QIlnWLShsPtdmESYIRPGCiV 612 (639)
|+.|||+|. +..... =...|+..|-.||+..+++.|--+-+||-+
T Consensus 117 d~~G~v~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 169 (171)
T cd02969 117 DPDGKLVYR--GRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPVPQTPSIGCSI 169 (171)
T ss_pred CCCCeEEEe--ecccCCcccccccccHHHHHHHHHHHHcCCCCCccccCCCCccc
Confidence 678999975 221111 125599999999999999999999999965
No 4
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=38.43 E-value=14 Score=33.76 Aligned_cols=18 Identities=44% Similarity=0.844 Sum_probs=14.9
Q ss_pred hhhhhhhhccccCCCccc
Q 006595 210 MQRFCQQCSRFHPLSEFD 227 (639)
Q Consensus 210 ~qRFCQQCsRFH~L~EFD 227 (639)
.-||||+|..+|+-.+=|
T Consensus 26 ~AR~C~~C~~~H~Ak~gD 43 (94)
T PF14901_consen 26 AARYCQDCKIRHPAKEGD 43 (94)
T ss_pred hhHhHHHhhhhcccccCC
Confidence 569999999999876644
No 5
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=34.84 E-value=13 Score=38.25 Aligned_cols=37 Identities=14% Similarity=0.378 Sum_probs=28.2
Q ss_pred cchhhcccccchhhcccceeeeCCchhhhhhhhccccC
Q 006595 185 AKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222 (639)
Q Consensus 185 ~K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~ 222 (639)
+-.+|++||-|..+-....+. .+...|.|..|+..|-
T Consensus 92 l~~w~~~~~fC~~CG~~~~~~-~~~~~~~C~~c~~~~y 128 (256)
T PRK00241 92 LAEFYRSHRFCGYCGHPMHPS-KTEWAMLCPHCRERYY 128 (256)
T ss_pred HHHHhhcCccccccCCCCeec-CCceeEECCCCCCEEC
Confidence 457999999998877765554 4556689999997773
No 6
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=32.45 E-value=14 Score=26.79 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=16.0
Q ss_pred cccccchhhcccceeeeCCchhhhhhhhcccc
Q 006595 190 RRHKVCELHSKSTKALVGKQMQRFCQQCSRFH 221 (639)
Q Consensus 190 rRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH 221 (639)
++||-|.. .-++++.+.+...|-|+.|+..|
T Consensus 1 ~~~rfC~~-CG~~t~~~~~g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 1 RNHRFCGR-CGAPTKPAPGGWARRCPSCGHEH 31 (32)
T ss_dssp HTTSB-TT-T--BEEE-SSSS-EEESSSS-EE
T ss_pred CCCcccCc-CCccccCCCCcCEeECCCCcCEe
Confidence 35666743 44566666666778888887644
No 7
>PF15306 LIN37: LIN37
Probab=31.95 E-value=33 Score=32.69 Aligned_cols=31 Identities=32% Similarity=0.635 Sum_probs=21.5
Q ss_pred eEEEecCCC--CCCCCh--hhHHHHHHhhhcCCcc
Q 006595 571 IIFKLFDKD--PSQFPG--TLRKEIYNWLSNSPSE 601 (639)
Q Consensus 571 IvFKLF~K~--PsdfP~--~LR~QIlnWLShsPtd 601 (639)
+|||||||. =.+|-. -|=.---.|+.+.|+.
T Consensus 16 ~v~kLfdRsvdLa~f~~~tpLY~lCRaWm~N~P~~ 50 (148)
T PF15306_consen 16 YVMKLFDRSVDLAQFSENTPLYPLCRAWMRNQPRN 50 (148)
T ss_pred eEEEEeCceeeecccCCCCcHHHHHHHHHccCCCc
Confidence 999999994 334432 3444445799999885
No 8
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=31.63 E-value=16 Score=39.01 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=29.0
Q ss_pred chhhcccccchhhcccceeeeCCchhhhhhhhcccc
Q 006595 186 KDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFH 221 (639)
Q Consensus 186 K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH 221 (639)
-++|++||.|. ++-.+....+|...|-|++|+.-|
T Consensus 105 ~~w~~~~RFCg-~CG~~~~~~~~g~~~~C~~cg~~~ 139 (279)
T COG2816 105 LEWYRSHRFCG-RCGTKTYPREGGWARVCPKCGHEH 139 (279)
T ss_pred HHHHhhCcCCC-CCCCcCccccCceeeeCCCCCCcc
Confidence 46789999995 666777888888899999999766
No 9
>PRK07217 replication factor A; Reviewed
Probab=28.48 E-value=33 Score=37.12 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=40.4
Q ss_pred CCCCcccccCCCccccccCCCCCCCCCC-CCCCccccCCCCCCCCCCccccCCCchhhcccchhhcccccchhhcccc
Q 006595 126 EDDGRLDLNLGGGLTAVDVEQPEPPVVT-SKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKST 202 (639)
Q Consensus 126 ~~~~~l~l~Lgg~~~~~~~~~~~~~~~~-~~p~kr~R~g~~g~~~~~~CQVdGC~adLs~~K~YhrRhrVCe~H~KA~ 202 (639)
+-.++++||||..+......+..++... .......=.-++|++--.+|-.+||+.-|+. -.|+.|=+..
T Consensus 143 ey~G~~~lnlg~~t~I~~~de~IeV~~~~vei~G~lVdi~~GsglI~rCP~~~C~Rvl~~--------g~C~~HG~ve 212 (311)
T PRK07217 143 EYQGRFSVKLNRTTSIEELDEDIEVGDDEVEVEGALVDIQSGSGLIKRCPEEDCTRVLQN--------GRCSEHGKVE 212 (311)
T ss_pred eECCEEEEEeCCceEEEeCCCCccccCccccceeEEEEEeCCCCCeecCCccccCccccC--------CCCCCCCCcC
Confidence 3457889999987655533332111111 1111111123445677789999999999955 4788887654
No 10
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=22.28 E-value=58 Score=33.80 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=22.0
Q ss_pred EecCCCCCCCChhhHHHHHHhhhcCCcccc
Q 006595 574 KLFDKDPSQFPGTLRKEIYNWLSNSPSEME 603 (639)
Q Consensus 574 KLF~K~PsdfP~~LR~QIlnWLShsPtdmE 603 (639)
|.||-+-..=| ..-||+|||..|-.+|
T Consensus 95 KVF~DNt~~nP---QDAIYDWvSkCPeN~E 121 (238)
T PF10915_consen 95 KVFGDNTHPNP---QDAIYDWVSKCPENTE 121 (238)
T ss_pred ccccCCCCCCh---HHHHHHHHhhCCccch
Confidence 78888766545 5689999999999887
No 11
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=20.45 E-value=32 Score=38.96 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCCCccccCCCch--------hhcccchhhcc-------cccchhhcccceeeeCCchhhhhhhhc
Q 006595 168 APYPMCQVDNCKE--------DLSNAKDYHRR-------HKVCELHSKSTKALVGKQMQRFCQQCS 218 (639)
Q Consensus 168 ~~~~~CQVdGC~a--------dLs~~K~YhrR-------hrVCe~H~KA~~V~v~G~~qRFCQQCs 218 (639)
+..-.|+|-|=.| .+.++|.|||| ||-| .|+..-.+-..-.--||+|.
T Consensus 130 ~~~~lCkVCgDkASGfHYGV~aCEGCKGFFRRSIQqkI~YrrC---lk~e~C~I~R~nRNRCQ~CR 192 (538)
T KOG4846|consen 130 KAISLCKVCGDKASGFHYGVTACEGCKGFFRRSIQQKIDYRRC---LKQEVCEIKRENRNRCQYCR 192 (538)
T ss_pred ceeEeehhhccccccceeceeecccchHHHHHHHHHhhhHHHH---hhhhceehhhhccchhhhhh
Confidence 3455788844333 26678999998 4555 56666555555556799996
Done!