Query 006595
Match_columns 639
No_of_seqs 155 out of 312
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.5E-41 5.2E-46 295.7 -1.5 91 164-254 2-92 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 9.8E-40 3.3E-44 281.5 -3.1 82 169-250 2-83 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 8.7E-31 3E-35 212.3 1.1 59 169-227 2-60 (60)
4 3fau_A NEDD4-binding protein 2 35.6 18 0.00063 29.5 2.2 30 585-615 52-81 (82)
5 2k75_A Uncharacterized protein 31.3 25 0.00087 30.2 2.5 17 563-579 43-59 (106)
6 2vkc_A NEDD4-binding protein 2 24.9 58 0.002 29.2 3.8 31 584-615 104-134 (135)
7 2d8r_A THAP domain-containing 24.1 39 0.0013 28.7 2.4 14 169-182 8-21 (99)
8 2lau_A THAP domain-containing 23.7 36 0.0012 27.5 2.0 10 171-180 5-14 (81)
9 1vk6_A NADH pyrophosphatase; 1 23.5 15 0.00053 36.3 -0.3 37 185-222 100-136 (269)
10 2d9i_A NEDD4-binding protein 2 21.7 60 0.0021 27.1 3.0 31 584-615 59-89 (96)
11 4a6q_A Histone deacetylase com 20.8 19 0.00065 33.8 -0.3 28 189-227 20-47 (143)
12 2ywi_A Hypothetical conserved 20.7 99 0.0034 27.0 4.4 47 566-612 138-190 (196)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.5e-41 Score=295.70 Aligned_cols=91 Identities=60% Similarity=1.044 Sum_probs=80.4
Q ss_pred CCCCCCCCccccCCCchhhcccchhhcccccchhhcccceeeeCCchhhhhhhhccccCCCccccccchHHHHHHHHHHh
Q 006595 164 SPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRR 243 (639)
Q Consensus 164 ~~g~~~~~~CQVdGC~adLs~~K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~Hn~R 243 (639)
++|+++.++||||||.+||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCchhhc
Q 006595 244 RRKTQPEDITS 254 (639)
Q Consensus 244 RRk~qp~~~~~ 254 (639)
|||++++...+
T Consensus 82 RRk~~~~~~~~ 92 (94)
T 1ul4_A 82 RRKSSGESGPS 92 (94)
T ss_dssp CCSCCCC----
T ss_pred hccCCCCcCCC
Confidence 99999987653
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=9.8e-40 Score=281.54 Aligned_cols=82 Identities=44% Similarity=0.928 Sum_probs=78.0
Q ss_pred CCCccccCCCchhhcccchhhcccccchhhcccceeeeCCchhhhhhhhccccCCCccccccchHHHHHHHHHHhhccCC
Q 006595 169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQ 248 (639)
Q Consensus 169 ~~~~CQVdGC~adLs~~K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLa~Hn~RRRk~q 248 (639)
..++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred Cc
Q 006595 249 PE 250 (639)
Q Consensus 249 p~ 250 (639)
.+
T Consensus 82 ~~ 83 (88)
T 1ul5_A 82 VD 83 (88)
T ss_dssp CS
T ss_pred cc
Confidence 55
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.96 E-value=8.7e-31 Score=212.31 Aligned_cols=59 Identities=75% Similarity=1.229 Sum_probs=57.1
Q ss_pred CCCccccCCCchhhcccchhhcccccchhhcccceeeeCCchhhhhhhhccccCCCccc
Q 006595 169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227 (639)
Q Consensus 169 ~~~~CQVdGC~adLs~~K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~L~EFD 227 (639)
+.++||||||++||+.+|+|||||||||.|+||++|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 56799999999999999999999999999999999999999999999999999999998
No 4
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=35.56 E-value=18 Score=29.48 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=23.7
Q ss_pred hhhHHHHHHhhhcCCccccccccCCceEEee
Q 006595 585 GTLRKEIYNWLSNSPSEMESYIRPGCVILSL 615 (639)
Q Consensus 585 ~~LR~QIlnWLShsPtdmESYIRPGCiVLTI 615 (639)
..||..|.+||...|-..++ ..||||++.+
T Consensus 52 ~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~l 81 (82)
T 3fau_A 52 ARIKPAVIKYLISHSFRFSE-IKPGCLKVML 81 (82)
T ss_dssp -CHHHHHHHHHHHTTCCEEE-EETTEEEEEC
T ss_pred chHHHHHHHHHHhCCCceee-CCCEEEEEEe
Confidence 45999999999999976543 5899988753
No 5
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=31.28 E-value=25 Score=30.23 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=14.3
Q ss_pred CccCCCCceEEEecCCC
Q 006595 563 DAQDCTGRIIFKLFDKD 579 (639)
Q Consensus 563 daQ~RTgRIvFKLF~K~ 579 (639)
.=.|.||+|-|+|++..
T Consensus 43 ~l~DeTG~I~~tlW~~~ 59 (106)
T 2k75_A 43 YIEDDTARIRISSFGKQ 59 (106)
T ss_dssp EEECSSCEEEEEEESSC
T ss_pred EEEcCCCeEEEEEEcCc
Confidence 44589999999999876
No 6
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=24.86 E-value=58 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=23.9
Q ss_pred ChhhHHHHHHhhhcCCccccccccCCceEEee
Q 006595 584 PGTLRKEIYNWLSNSPSEMESYIRPGCVILSL 615 (639)
Q Consensus 584 P~~LR~QIlnWLShsPtdmESYIRPGCiVLTI 615 (639)
.+.||..|..||...|--.+. .-+|++++++
T Consensus 104 ~~~Lk~~V~~~L~~~~~~~~e-~g~G~~~V~L 134 (135)
T 2vkc_A 104 VARIKPAVIKYLISHSFRFSE-IKPGCLKVML 134 (135)
T ss_dssp CCTHHHHHHHHHHTTTCEEEE-CSTTEEEEEC
T ss_pred CchHHHHHHHHHhcCCCceee-CCCCeEEEEe
Confidence 378999999999999965532 3788887653
No 7
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=24.11 E-value=39 Score=28.66 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=10.1
Q ss_pred CCCccccCCCchhh
Q 006595 169 PYPMCQVDNCKEDL 182 (639)
Q Consensus 169 ~~~~CQVdGC~adL 182 (639)
....|-|.||...-
T Consensus 8 M~~~C~v~gC~n~~ 21 (99)
T 2d8r_A 8 MPTNCAAAGCATTY 21 (99)
T ss_dssp CCCCCCSSSCCCSC
T ss_pred CCCeeEeCCCCCCC
Confidence 34479999998643
No 8
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=23.73 E-value=36 Score=27.54 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=8.1
Q ss_pred CccccCCCch
Q 006595 171 PMCQVDNCKE 180 (639)
Q Consensus 171 ~~CQVdGC~a 180 (639)
..|-|.||..
T Consensus 5 ~~C~v~gC~n 14 (81)
T 2lau_A 5 FTCCVPGCYN 14 (81)
T ss_dssp CSCCCSSSSS
T ss_pred CEEEeCCCcC
Confidence 4799999974
No 9
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=23.51 E-value=15 Score=36.26 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=28.2
Q ss_pred cchhhcccccchhhcccceeeeCCchhhhhhhhccccC
Q 006595 185 AKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222 (639)
Q Consensus 185 ~K~YhrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~ 222 (639)
+..+|++++-|..+-. +....++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG~-~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCGH-EMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTCC-BEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCCC-cCccCCCceeeeCCCCCCEec
Confidence 4568899999987654 455567778899999997663
No 10
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=21.68 E-value=60 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=23.8
Q ss_pred ChhhHHHHHHhhhcCCccccccccCCceEEee
Q 006595 584 PGTLRKEIYNWLSNSPSEMESYIRPGCVILSL 615 (639)
Q Consensus 584 P~~LR~QIlnWLShsPtdmESYIRPGCiVLTI 615 (639)
.+.||..|..||...|--.+ -.-+|++++.+
T Consensus 59 ~~~Lk~~V~~~L~~~~~~~~-egg~Ga~~V~L 89 (96)
T 2d9i_A 59 VARIKPAVIKYLISHSFRFS-EIKPGCLKVML 89 (96)
T ss_dssp TTCHHHHHHHHHHHTTCCEE-CCSTTCEEEEC
T ss_pred cchHHHHHHHHHhhCCCccc-cCCCcEEEEEE
Confidence 47899999999999997542 23688887654
No 11
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=20.79 E-value=19 Score=33.81 Aligned_cols=28 Identities=32% Similarity=0.565 Sum_probs=23.0
Q ss_pred hcccccchhhcccceeeeCCchhhhhhhhccccCCCccc
Q 006595 189 HRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227 (639)
Q Consensus 189 hrRhrVCe~H~KA~~V~v~G~~qRFCQQCsRFH~L~EFD 227 (639)
--|.++|+++.+ -||.+=++||.++||.
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~ 47 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFS 47 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGC
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHcc
Confidence 368899999875 4887768999999996
No 12
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=20.74 E-value=99 Score=26.97 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCCCceEEEecCCCC-----CC-CChhhHHHHHHhhhcCCccccccccCCceE
Q 006595 566 DCTGRIIFKLFDKDP-----SQ-FPGTLRKEIYNWLSNSPSEMESYIRPGCVI 612 (639)
Q Consensus 566 ~RTgRIvFKLF~K~P-----sd-fP~~LR~QIlnWLShsPtdmESYIRPGCiV 612 (639)
|+.|+|+++-...++ .. -+..|+..|...|...+...+..--.||-|
T Consensus 138 d~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~~~~~~~~~gC~~ 190 (196)
T 2ywi_A 138 DRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRPVPEKQKPSIGCSI 190 (196)
T ss_dssp ETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCCCCSCCCCCEEEEC
T ss_pred cCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCCCCCCCCCCCceee
Confidence 578999998543322 11 346789999999999999999999999975
Done!