Query 006596
Match_columns 639
No_of_seqs 147 out of 172
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:49:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 91.1 0.045 1.5E-06 45.3 0.3 62 258-326 5-67 (70)
2 2kz3_A Putative uncharacterize 85.7 0.65 2.2E-05 39.8 3.9 41 274-319 16-56 (83)
3 2i1q_A DNA repair and recombin 73.1 1.1 3.9E-05 44.7 1.5 59 260-325 3-61 (322)
4 3lda_A DNA repair protein RAD5 70.8 2.4 8.3E-05 44.9 3.4 62 260-326 81-142 (400)
5 1b22_A DNA repair protein RAD5 66.7 1.1 3.7E-05 40.4 -0.2 62 261-327 24-85 (114)
6 2z43_A DNA repair and recombin 65.2 1.4 4.7E-05 44.5 0.2 57 261-324 13-69 (324)
7 1v5w_A DMC1, meiotic recombina 61.3 1.9 6.3E-05 44.2 0.3 59 261-324 26-84 (343)
8 3mab_A Uncharacterized protein 57.3 1.6 5.5E-05 38.1 -0.9 74 264-376 8-81 (93)
9 1pzn_A RAD51, DNA repair and r 55.6 7.3 0.00025 40.1 3.5 59 261-326 36-94 (349)
10 4dez_A POL IV 1, DNA polymeras 43.4 6.3 0.00022 40.5 0.8 40 262-306 180-219 (356)
11 3pzp_A DNA polymerase kappa; D 43.1 11 0.00037 41.4 2.6 51 262-322 340-390 (517)
12 3osn_A DNA polymerase IOTA; ho 39.6 5.8 0.0002 42.2 -0.2 52 262-322 236-287 (420)
13 2aq4_A DNA repair protein REV1 36.8 12 0.0004 39.9 1.5 52 262-321 243-296 (434)
14 3im1_A Protein SNU246, PRE-mRN 36.5 17 0.00059 36.9 2.7 55 261-322 158-212 (328)
15 1inz_A EPS15-interacting porte 36.2 8.5 0.00029 36.0 0.3 15 618-636 123-137 (148)
16 1t94_A Polymerase (DNA directe 35.6 16 0.00056 39.0 2.5 50 262-321 284-333 (459)
17 1jx4_A DNA polymerase IV (fami 32.7 13 0.00045 38.0 1.1 54 262-324 180-233 (352)
18 2q0z_X Protein Pro2281; SEC63, 30.3 35 0.0012 34.9 3.8 55 261-322 162-216 (339)
19 3bq0_A POL IV, DBH, DNA polyme 30.0 16 0.00054 37.5 1.2 54 262-324 181-234 (354)
20 1eyh_A Epsin; superhelix of he 29.7 8.6 0.0003 35.7 -0.8 15 618-636 105-119 (144)
21 4f4y_A POL IV, DNA polymerase 28.4 8.6 0.00029 40.0 -1.1 48 265-321 184-231 (362)
22 1xgw_A Epsin 4; ENTH, enthopro 27.9 9.7 0.00033 36.7 -0.8 15 618-636 135-149 (176)
23 3gqc_A DNA repair protein REV1 23.8 16 0.00056 40.0 -0.0 51 262-321 317-367 (504)
24 1z3e_B DNA-directed RNA polyme 22.8 52 0.0018 27.4 2.8 25 276-303 22-46 (73)
25 1u9l_A Transcription elongatio 22.4 41 0.0014 27.7 2.1 51 271-326 15-65 (70)
26 3k4g_A DNA-directed RNA polyme 20.6 58 0.002 28.1 2.7 38 276-318 25-62 (86)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.12 E-value=0.045 Score=45.29 Aligned_cols=62 Identities=26% Similarity=0.443 Sum_probs=50.8
Q ss_pred CCCcceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcc-cccC
Q 006596 258 LNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT-CVLS 326 (639)
Q Consensus 258 L~DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~ 326 (639)
+.|++-.|++|+..-+ ++|.++||+||+|+.. .+...|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887776544 8999999999998754 4788898887 7899999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=85.74 E-value=0.65 Score=39.77 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=31.3
Q ss_pred hhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHh
Q 006596 274 FHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDH 319 (639)
Q Consensus 274 ~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~H 319 (639)
.-++|.+++|.||+||+. .|+.+|-+++ |+|-+.=-.+..|
T Consensus 16 ~~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 16 MIQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHH
Confidence 357899999999999975 7999999999 4565554444443
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.12 E-value=1.1 Score=44.66 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=44.5
Q ss_pred CcceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhccccc
Q 006596 260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL 325 (639)
Q Consensus 260 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 325 (639)
+++..|++|+. ..-++|.++||+||+||+. .++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45667775554 4669999999999999875 4677787776 6788888888888887753
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=70.80 E-value=2.4 Score=44.92 Aligned_cols=62 Identities=23% Similarity=0.225 Sum_probs=50.5
Q ss_pred CcceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccccC
Q 006596 260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS 326 (639)
Q Consensus 260 DeVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 326 (639)
.+|-+|+..|-.-..-++|.++||+||++|+. .++..|.++. |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888655556679999999999999875 5888999997 68998888888999876644
No 5
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=66.75 E-value=1.1 Score=40.38 Aligned_cols=62 Identities=29% Similarity=0.380 Sum_probs=50.4
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccccCC
Q 006596 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSG 327 (639)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~ 327 (639)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.+|- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889865444567799999999999975 556788999986 789999999999999887544
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=65.16 E-value=1.4 Score=44.51 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006596 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (639)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (639)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888877654 5599999999999999853 455677765 567777777777776654
No 7
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=61.35 E-value=1.9 Score=44.16 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006596 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (639)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (639)
++++|+.-|-.=..-++|.++||+||++|+. .++.+|.++. |+|...=+.+++.|..+.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~---~~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQM---TTRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 6889994444445669999999999999985 4566676665 566666666777776553
No 8
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=57.31 E-value=1.6 Score=38.10 Aligned_cols=74 Identities=23% Similarity=0.411 Sum_probs=49.1
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccccCCceEEEecCCCcceEEE
Q 006596 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVV 343 (639)
Q Consensus 264 RLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~nvgl~ 343 (639)
.|-+||+. .-+.|.+.||+||+||..+ + +.+.|..+.++- .+ +-
T Consensus 8 dLPNig~~--~e~~L~~~GI~t~~~Lr~~---G------------a~~ay~rLk~~~-----------------~~--~~ 51 (93)
T 3mab_A 8 ELPNIGKV--LEQDLIKAGIKTPVELKDV---G------------SKEAFLRIWEND-----------------SS--VC 51 (93)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHHHH---C------------HHHHHHHHHHHC-----------------TT--CC
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHHhC---C------------HHHHHHHHHHhC-----------------CC--CC
Confidence 44556664 3478999999999988763 2 234444443320 01 23
Q ss_pred EccccceeeeecCCeeecCCCCChhhHHHHHHH
Q 006596 344 FNNIYELNGLISGEQYFPADALPESQKVYVDSQ 376 (639)
Q Consensus 344 FN~i~~lVG~~~~g~y~s~d~L~~~qk~~V~~L 376 (639)
+|.+|.|+|++-| +....|++..|.....+
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 7888999999988 66778888888766554
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=55.61 E-value=7.3 Score=40.06 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=46.2
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccccC
Q 006596 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS 326 (639)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 326 (639)
++.+|.+|+ -...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++...
T Consensus 36 ~l~~l~Gi~--~~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~ 94 (349)
T 1pzn_A 36 SIEDLPGVG--PATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL 94 (349)
T ss_dssp CSSCCTTCC--HHHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred cHHHcCCCC--HHHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence 466666554 46789999999999999864 5788899987 57877778889999877643
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=43.44 E-value=6.3 Score=40.50 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=31.2
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGS 306 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~ 306 (639)
|-.|-+||+. .-++|...||+|++|+. ..++..|++.||.
T Consensus 180 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPK--TTKKLAAMGITTVADLA---VTDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHH---TSCHHHHHHHHCH
T ss_pred HHHHcCCchh--HHHHHHHcCCCeecccc---cCCHHHHHHHhCC
Confidence 3344467764 44899999999999986 5689999999974
No 11
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=43.07 E-value=11 Score=41.38 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=38.2
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (639)
|-+|-+||+.+ -++|...||+|++|+.++ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t--~~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHH--HHHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 44555777655 489999999999999885 357888875 4568877777653
No 12
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=39.63 E-value=5.8 Score=42.23 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=37.7
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (639)
|-+|-+||+ ..-++|...||+|++|+.+ .++..|++.||. +....+.+||.-
T Consensus 236 v~~l~GIG~--~t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~G 287 (420)
T 3osn_A 236 IKEIPGIGY--KTAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSFG 287 (420)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred HHHccCCCH--HHHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhcC
Confidence 333345554 4569999999999999865 588999999974 345666677753
No 13
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=36.79 E-value=12 Score=39.90 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=38.1
Q ss_pred ceeeeeeccCchhhhhhhh--cCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006596 262 VWRLEKIGKDGSFHKRLNN--AGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~--~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (639)
|-.|-+||+ ..-++|.. .||+|++|+.++. ++..|++.||. +....+..||+
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~----~~g~~l~~~a~ 296 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS----KLGMKIHLALQ 296 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS----SHHHHHHHHTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH----HHHHHHHHHhc
Confidence 444445564 56689999 8999999999875 78999999974 23445556665
No 14
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=36.54 E-value=17 Score=36.95 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=43.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006596 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (639)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (639)
+..-|.+|+.+-+ ++|.++||.|++||.. .+++++.++| +++++.-+.+.+-|..
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence 3556778877544 6799999999999865 5899999998 6888888887776653
No 15
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=36.21 E-value=8.5 Score=35.99 Aligned_cols=15 Identities=47% Similarity=0.623 Sum_probs=14.1
Q ss_pred hhhhhhhhhHHhhhhcccc
Q 006596 618 WGFFIRKKAAERRAQIVEL 636 (639)
Q Consensus 618 WGiFiRKKAAERRAQlVEL 636 (639)
||+.||+||. +|++|
T Consensus 123 ~G~nVR~kAk----~l~~L 137 (148)
T 1inz_A 123 QGVNVREKAK----QLVAL 137 (148)
T ss_dssp CCHHHHHHHH----HHHHH
T ss_pred chHHHHHHHH----HHHHH
Confidence 8999999999 88888
No 16
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=35.56 E-value=16 Score=38.99 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=37.6
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (639)
|-+|-+||+. ..++|...||+|++|+.++ +..|++.|| .+.|..+..+|+
T Consensus 284 v~~l~GiG~~--~~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKV--TEKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHH--HHHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHH--HHHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 5566677765 4589999999999998874 356999886 345666777776
No 17
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=32.66 E-value=13 Score=38.05 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=40.0
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (639)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 555556665 4668999999999999864 688999999974 22566677776433
No 18
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=30.31 E-value=35 Score=34.88 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=42.6
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006596 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (639)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (639)
+..-|.+|+.+ .-++|.++||.|++||.. .++.++..+|| +++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 46677888765 447899999999999865 78999999994 888776777665543
No 19
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=29.96 E-value=16 Score=37.49 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=39.7
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (639)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 344445664 5678999999999999874 688999999974 22666777777433
No 20
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=29.65 E-value=8.6 Score=35.74 Aligned_cols=15 Identities=47% Similarity=0.623 Sum_probs=13.7
Q ss_pred hhhhhhhhhHHhhhhcccc
Q 006596 618 WGFFIRKKAAERRAQIVEL 636 (639)
Q Consensus 618 WGiFiRKKAAERRAQlVEL 636 (639)
||+.||+||. +|++|
T Consensus 105 ~G~~VR~kak----~l~~L 119 (144)
T 1eyh_A 105 QGVNVREKAK----QLVAL 119 (144)
T ss_dssp CHHHHHHHHH----HHHHH
T ss_pred hHHHHHHHHH----HHHHH
Confidence 8999999999 78887
No 21
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=28.41 E-value=8.6 Score=39.98 Aligned_cols=48 Identities=31% Similarity=0.430 Sum_probs=35.4
Q ss_pred eeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006596 265 LEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (639)
Q Consensus 265 LekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (639)
|-+||+. .-++|...||+|++|+. ..++..|++.||. +....+..+|+
T Consensus 184 l~GiG~~--~~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 184 IPGIGSV--LARRLNELGIQKLRDIL---SKNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp STTCCST--THHHHHHTTCCBGGGGT---TSCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred ccCCCHH--HHHHHHHcCCChHHHHh---cCCHHHHHHHhCh----HHHHHHHHHhc
Confidence 3366664 45899999999999976 4688999999973 34555556664
No 22
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=27.91 E-value=9.7 Score=36.68 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=13.9
Q ss_pred hhhhhhhhhHHhhhhcccc
Q 006596 618 WGFFIRKKAAERRAQIVEL 636 (639)
Q Consensus 618 WGiFiRKKAAERRAQlVEL 636 (639)
||+.||+||. +|++|
T Consensus 135 ~G~~VR~kAk----~i~~L 149 (176)
T 1xgw_A 135 QGINIRQKVK----ELVEF 149 (176)
T ss_dssp CHHHHHHHHH----HHHHH
T ss_pred hHHHHHHHHH----HHHHH
Confidence 9999999999 88887
No 23
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=23.79 E-value=16 Score=40.05 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=35.8
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006596 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (639)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (639)
|-.|-+||+ ..-++|...||+|++|+. ..++..|++.||.. ....+..+|+
T Consensus 317 V~~l~GIG~--~t~~kL~~lGI~TigDLa---~~~~~~L~~~fG~~----~g~~L~~~a~ 367 (504)
T 3gqc_A 317 VTNLPGVGH--SMESKLASLGIKTCGDLQ---YMTMAKLQKEFGPK----TGQMLYRFCR 367 (504)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCBHHHHT---TSCHHHHHHHHCHH----HHHHHHHHTT
T ss_pred hhHhhCcCH--HHHHHHHHcCCCcHHHHH---hccHHHHHHhhChh----HHHHHHHHhc
Confidence 444445665 455899999999999986 46889999999752 2333445554
No 24
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=22.75 E-value=52 Score=27.35 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=19.4
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHH
Q 006596 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSI 303 (639)
Q Consensus 276 krL~~~gI~tV~dFLrl~~~d~~kLR~i 303 (639)
.-|+.+||+||+|+++ +.++.|.++
T Consensus 22 NcLkragI~Tv~dL~~---~s~~dLlki 46 (73)
T 1z3e_B 22 NCLKRAGINTVQELAN---KTEEDMMKV 46 (73)
T ss_dssp HHHHHTTCCBHHHHHT---SCHHHHHTS
T ss_pred HHHHHcCCCcHHHHHc---CCHHHHHHc
Confidence 4678899999999876 456666666
No 25
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=22.41 E-value=41 Score=27.71 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=40.7
Q ss_pred CchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHHhhcccccC
Q 006596 271 DGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS 326 (639)
Q Consensus 271 dG~~hkrL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 326 (639)
+-..-++|..+|++||++. .+.+++.|-.|- |++...=+.+.+-|+.++..
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~~ 65 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALAT 65 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHHH
Confidence 3456789999999999964 556777777775 78999999999999887543
No 26
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=20.62 E-value=58 Score=28.09 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.0
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHccCCChhhHHHHHH
Q 006596 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLD 318 (639)
Q Consensus 276 krL~~~gI~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~ 318 (639)
.-|+.+||+||+|+++. +++.|.+|= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 46889999999998764 555666652 344555555443
Done!