BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006597
         (639 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
           A Small Segment Of Adjacent Coiled-Coil Region
 pdb|4E8U|C Chain C, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
           A Small Segment Of Adjacent Coiled-Coil Region
          Length = 172

 Score =  242 bits (618), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 133/167 (79%)

Query: 112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHS 171
           C HDEK V+PW GIVVNIPT +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ GHS
Sbjct: 3   CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHS 62

Query: 172 GCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII 231
           G A+VEF+KDW GLHN + F+KAY  D +GKKDW   +  K GLY W+AR+DDYN  NII
Sbjct: 63  GTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNII 122

Query: 232 GDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKE 278
           G++LRK GDLKTI+E+ EEEARKQ LLV NL  ++E K K ++E++E
Sbjct: 123 GENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEE 169


>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
 pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
 pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
 pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
          Length = 394

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 433 HMGDDGDIEVLQKMETVLKDLREKEGELDDL 463
           H+GD    EV Q+++ +L  LRE+  E +DL
Sbjct: 3   HVGDHDSHEVXQRLDALLPTLRERAQETEDL 33


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,181,064
Number of Sequences: 62578
Number of extensions: 688468
Number of successful extensions: 1795
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 69
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)