Query 006597
Match_columns 639
No_of_seqs 163 out of 181
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 11:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03469 XH: XH domain; Inter 100.0 4.9E-65 1.1E-69 471.2 13.8 132 504-635 1-132 (132)
2 PF03468 XS: XS domain; Inter 100.0 3.4E-45 7.4E-50 333.8 5.4 115 114-231 1-116 (116)
3 PF03470 zf-XS: XS zinc finger 99.7 3.1E-18 6.7E-23 131.0 2.9 43 43-86 1-43 (43)
4 TIGR02169 SMC_prok_A chromosom 96.8 2.1 4.6E-05 51.9 32.7 17 143-159 118-134 (1164)
5 KOG0161 Myosin class II heavy 96.6 0.89 1.9E-05 58.9 28.2 223 214-436 782-1037(1930)
6 PF10174 Cast: RIM-binding pro 96.5 1.2 2.6E-05 53.4 26.5 218 259-487 401-635 (775)
7 KOG4643 Uncharacterized coiled 96.4 2.3 4.9E-05 51.8 27.6 172 244-415 279-501 (1195)
8 KOG0996 Structural maintenance 96.3 4.3 9.4E-05 50.3 30.1 247 255-520 375-642 (1293)
9 PF07888 CALCOCO1: Calcium bin 96.2 3.4 7.5E-05 47.7 30.1 68 236-303 150-217 (546)
10 TIGR02169 SMC_prok_A chromosom 96.0 5.4 0.00012 48.5 32.7 32 457-488 454-485 (1164)
11 PRK11637 AmiB activator; Provi 96.0 3.4 7.4E-05 45.8 27.7 48 386-433 168-215 (428)
12 KOG0161 Myosin class II heavy 95.8 9.9 0.00021 49.9 32.2 48 415-466 1037-1084(1930)
13 KOG0996 Structural maintenance 95.8 7.5 0.00016 48.4 29.4 65 254-318 303-367 (1293)
14 PF12128 DUF3584: Protein of u 95.8 6 0.00013 49.7 28.9 45 446-490 478-522 (1201)
15 COG1196 Smc Chromosome segrega 95.7 8.6 0.00019 48.2 32.0 154 442-597 444-634 (1163)
16 PRK11637 AmiB activator; Provi 95.4 4.3 9.4E-05 45.0 23.4 42 318-359 170-211 (428)
17 TIGR02168 SMC_prok_B chromosom 95.3 9.5 0.00021 46.2 31.2 12 568-579 968-979 (1179)
18 KOG0976 Rho/Rac1-interacting s 95.1 10 0.00022 45.6 28.2 132 318-460 256-398 (1265)
19 TIGR02168 SMC_prok_B chromosom 94.8 13 0.00028 45.1 32.7 18 588-605 634-651 (1179)
20 PF07888 CALCOCO1: Calcium bin 94.5 12 0.00026 43.4 25.6 32 400-431 264-295 (546)
21 KOG4643 Uncharacterized coiled 94.4 17 0.00037 44.8 25.8 120 330-461 283-421 (1195)
22 PF09726 Macoilin: Transmembra 94.4 8 0.00017 46.1 23.1 44 262-305 458-501 (697)
23 COG1196 Smc Chromosome segrega 94.4 19 0.00042 45.2 35.0 37 570-606 1061-1097(1163)
24 KOG0250 DNA repair protein RAD 94.3 19 0.00041 44.6 28.5 107 440-553 867-1017(1074)
25 KOG0250 DNA repair protein RAD 94.1 21 0.00045 44.4 30.0 86 234-319 202-304 (1074)
26 KOG0612 Rho-associated, coiled 94.0 22 0.00049 44.6 28.0 188 277-470 493-693 (1317)
27 PF05911 DUF869: Plant protein 93.7 18 0.00038 43.8 24.3 90 252-345 80-172 (769)
28 PF08317 Spc7: Spc7 kinetochor 93.6 4.9 0.00011 43.2 18.1 108 295-434 183-291 (325)
29 PF15066 CAGE1: Cancer-associa 93.6 6.7 0.00015 44.5 19.3 22 339-360 446-467 (527)
30 KOG4674 Uncharacterized conser 92.8 43 0.00092 44.0 28.4 219 231-478 1154-1380(1822)
31 KOG0933 Structural maintenance 92.6 33 0.00071 42.5 24.0 105 255-359 242-346 (1174)
32 PHA02562 46 endonuclease subun 92.5 22 0.00048 40.2 27.4 26 249-274 173-198 (562)
33 KOG4674 Uncharacterized conser 92.4 47 0.001 43.7 30.6 169 257-429 1243-1425(1822)
34 TIGR00606 rad50 rad50. This fa 92.0 45 0.00097 42.5 29.8 39 446-484 986-1024(1311)
35 PRK02224 chromosome segregatio 91.8 36 0.00078 41.0 30.8 12 400-411 347-358 (880)
36 PF15619 Lebercilin: Ciliary p 91.6 17 0.00037 36.8 22.5 137 291-476 56-193 (194)
37 KOG0964 Structural maintenance 90.5 54 0.0012 40.7 24.1 42 444-489 432-473 (1200)
38 KOG0579 Ste20-like serine/thre 90.5 47 0.001 39.9 28.5 222 233-471 789-1022(1187)
39 PRK02224 chromosome segregatio 90.3 49 0.0011 39.9 28.6 13 400-412 319-331 (880)
40 COG1382 GimC Prefoldin, chaper 89.5 5.8 0.00012 37.5 11.4 93 398-495 9-114 (119)
41 TIGR00606 rad50 rad50. This fa 89.2 76 0.0016 40.5 29.1 32 400-431 869-900 (1311)
42 PRK09039 hypothetical protein; 89.2 38 0.00083 37.0 20.2 27 478-504 189-216 (343)
43 KOG0933 Structural maintenance 89.0 70 0.0015 39.9 25.3 48 399-450 886-933 (1174)
44 KOG1853 LIS1-interacting prote 88.5 38 0.00082 36.2 20.2 131 326-488 46-180 (333)
45 PF05701 WEMBL: Weak chloropla 88.2 55 0.0012 37.7 31.7 95 254-349 169-263 (522)
46 KOG0982 Centrosomal protein Nu 88.1 53 0.0011 37.4 22.7 174 243-422 204-394 (502)
47 KOG4572 Predicted DNA-binding 88.0 59 0.0013 39.7 20.4 160 262-428 920-1108(1424)
48 PF05010 TACC: Transforming ac 87.9 35 0.00077 35.1 20.2 129 242-374 51-182 (207)
49 KOG0239 Kinesin (KAR3 subfamil 87.8 30 0.00066 41.2 18.4 201 258-504 115-319 (670)
50 PF05605 zf-Di19: Drought indu 87.5 0.33 7E-06 38.9 1.6 24 39-66 1-24 (54)
51 KOG0994 Extracellular matrix g 87.3 95 0.0021 39.4 24.1 39 231-270 1497-1535(1758)
52 KOG1937 Uncharacterized conser 86.6 61 0.0013 37.1 18.8 87 402-495 307-394 (521)
53 KOG0971 Microtubule-associated 86.5 93 0.002 38.5 29.0 106 452-561 509-618 (1243)
54 KOG0994 Extracellular matrix g 86.4 1.1E+02 0.0023 39.1 28.5 61 230-290 1479-1544(1758)
55 PF05701 WEMBL: Weak chloropla 86.4 70 0.0015 36.9 30.3 60 561-626 407-470 (522)
56 KOG1029 Endocytic adaptor prot 86.0 92 0.002 38.0 22.5 16 416-431 448-463 (1118)
57 PF15272 BBP1_C: Spindle pole 85.7 45 0.00098 34.2 17.8 134 250-412 12-149 (196)
58 KOG0962 DNA repair protein RAD 84.9 1.3E+02 0.0028 38.7 24.2 71 354-431 827-897 (1294)
59 KOG0249 LAR-interacting protei 84.7 75 0.0016 38.3 19.0 115 219-339 62-181 (916)
60 COG1340 Uncharacterized archae 84.7 64 0.0014 35.0 21.6 18 399-416 135-152 (294)
61 PF00076 RRM_1: RNA recognitio 84.3 1.9 4.1E-05 34.0 4.6 55 124-190 1-57 (70)
62 PF13851 GAS: Growth-arrest sp 83.9 24 0.00052 35.8 13.3 87 254-347 83-169 (201)
63 PRK04778 septation ring format 83.8 93 0.002 36.2 29.1 104 386-489 315-428 (569)
64 KOG0612 Rho-associated, coiled 83.6 1.4E+02 0.0031 38.1 26.7 52 561-614 965-1022(1317)
65 PHA02562 46 endonuclease subun 83.1 89 0.0019 35.4 28.0 35 395-429 313-347 (562)
66 PF05483 SCP-1: Synaptonemal c 82.7 1.2E+02 0.0026 36.6 27.5 135 278-412 485-632 (786)
67 PRK04863 mukB cell division pr 82.5 1.7E+02 0.0037 38.3 34.6 28 438-465 436-463 (1486)
68 KOG0971 Microtubule-associated 82.0 1.4E+02 0.0031 37.0 26.7 101 343-472 386-486 (1243)
69 KOG0977 Nuclear envelope prote 82.0 1.1E+02 0.0024 35.8 20.5 134 282-429 201-334 (546)
70 COG1579 Zn-ribbon protein, pos 81.5 75 0.0016 33.5 21.6 73 348-427 84-157 (239)
71 KOG0979 Structural maintenance 81.1 1.6E+02 0.0034 36.9 22.6 95 179-298 120-215 (1072)
72 KOG1029 Endocytic adaptor prot 81.1 1.4E+02 0.0031 36.5 28.6 19 442-460 547-565 (1118)
73 PF14259 RRM_6: RNA recognitio 79.0 3.2 6.9E-05 33.4 4.1 58 124-193 1-60 (70)
74 PLN03229 acetyl-coenzyme A car 78.7 74 0.0016 38.5 16.5 23 438-460 643-665 (762)
75 smart00787 Spc7 Spc7 kinetocho 77.9 1.1E+02 0.0024 33.3 17.9 24 413-436 247-270 (312)
76 KOG0978 E3 ubiquitin ligase in 77.9 1.7E+02 0.0037 35.4 27.0 102 328-436 513-625 (698)
77 KOG0946 ER-Golgi vesicle-tethe 77.8 1.8E+02 0.0039 35.7 24.2 49 230-278 630-678 (970)
78 PRK00409 recombination and DNA 77.7 49 0.0011 40.1 15.1 79 316-407 518-596 (782)
79 KOG0577 Serine/threonine prote 77.2 1.7E+02 0.0038 35.2 24.5 104 239-345 464-592 (948)
80 KOG0163 Myosin class VI heavy 77.0 76 0.0017 38.6 15.7 10 214-223 822-831 (1259)
81 KOG0239 Kinesin (KAR3 subfamil 76.7 1.5E+02 0.0032 35.7 18.3 27 409-435 297-323 (670)
82 PF15070 GOLGA2L5: Putative go 76.7 1.7E+02 0.0037 34.8 23.9 34 249-282 28-61 (617)
83 PF10186 Atg14: UV radiation r 76.2 98 0.0021 31.8 16.7 18 532-549 205-222 (302)
84 TIGR03319 YmdA_YtgF conserved 75.5 1.2E+02 0.0026 35.1 16.9 11 483-493 183-193 (514)
85 KOG0018 Structural maintenance 75.2 2.4E+02 0.0051 35.7 25.2 116 215-340 629-754 (1141)
86 PRK00106 hypothetical protein; 75.0 1.8E+02 0.0038 34.2 23.4 55 373-427 161-219 (535)
87 smart00362 RRM_2 RNA recogniti 74.9 6.2 0.00013 30.1 4.6 47 124-181 2-49 (72)
88 PF09726 Macoilin: Transmembra 74.0 2.1E+02 0.0046 34.6 24.2 37 319-355 451-487 (697)
89 PHA02540 61 DNA primase; Provi 73.7 0.88 1.9E-05 49.6 -0.6 122 40-190 27-161 (337)
90 KOG1853 LIS1-interacting prote 73.6 1.3E+02 0.0029 32.2 20.1 40 387-426 132-171 (333)
91 TIGR01069 mutS2 MutS2 family p 73.5 71 0.0015 38.7 15.0 40 322-361 512-551 (771)
92 PF12128 DUF3584: Protein of u 72.7 2.8E+02 0.006 35.4 34.8 43 556-599 894-936 (1201)
93 PF10498 IFT57: Intra-flagella 72.4 1.5E+02 0.0033 32.9 16.0 42 44-94 16-57 (359)
94 PRK12704 phosphodiesterase; Pr 71.5 2E+02 0.0044 33.4 23.2 55 373-427 146-204 (520)
95 TIGR03319 YmdA_YtgF conserved 71.2 2.1E+02 0.0045 33.3 23.4 55 374-428 141-199 (514)
96 PF10481 CENP-F_N: Cenp-F N-te 70.8 1.6E+02 0.0035 31.9 15.8 108 321-439 18-136 (307)
97 PF08702 Fib_alpha: Fibrinogen 70.3 95 0.0021 30.2 12.4 58 252-309 31-91 (146)
98 PF00038 Filament: Intermediat 69.8 1.5E+02 0.0033 31.1 21.7 62 394-462 215-280 (312)
99 PRK04778 septation ring format 67.6 2.5E+02 0.0054 32.8 26.7 21 285-305 282-302 (569)
100 KOG1899 LAR transmembrane tyro 67.3 1.5E+02 0.0033 35.4 15.0 36 256-291 124-159 (861)
101 PF00261 Tropomyosin: Tropomyo 67.0 1.6E+02 0.0034 30.4 24.1 34 257-290 36-69 (237)
102 PRK04863 mukB cell division pr 66.3 4.2E+02 0.0091 35.0 26.8 25 441-465 446-470 (1486)
103 PF10168 Nup88: Nuclear pore c 66.1 3.1E+02 0.0066 33.3 18.0 69 272-340 552-626 (717)
104 KOG0946 ER-Golgi vesicle-tethe 65.8 3.3E+02 0.0072 33.6 20.0 172 291-484 652-839 (970)
105 KOG0963 Transcription factor/C 65.6 3E+02 0.0064 32.9 23.6 40 396-435 311-360 (629)
106 PF10174 Cast: RIM-binding pro 65.1 3.3E+02 0.0072 33.4 28.4 172 240-416 319-493 (775)
107 PF00261 Tropomyosin: Tropomyo 64.8 1.8E+02 0.0038 30.0 21.3 70 417-486 146-218 (237)
108 PRK00409 recombination and DNA 64.6 1.7E+02 0.0037 35.6 15.7 61 248-308 511-571 (782)
109 COG0419 SbcC ATPase involved i 63.9 3.5E+02 0.0077 33.3 29.7 25 404-428 680-704 (908)
110 PF06637 PV-1: PV-1 protein (P 62.7 2.5E+02 0.0055 31.7 15.0 106 253-358 281-386 (442)
111 PF05622 HOOK: HOOK protein; 62.2 2.5 5.5E-05 50.0 0.0 64 402-468 537-600 (713)
112 KOG0963 Transcription factor/C 61.7 3.4E+02 0.0075 32.4 25.1 65 415-495 295-359 (629)
113 PF05557 MAD: Mitotic checkpoi 61.1 2.7 5.9E-05 49.7 0.0 93 395-487 288-393 (722)
114 cd07651 F-BAR_PombeCdc15_like 60.8 2E+02 0.0043 29.4 18.8 105 312-429 105-214 (236)
115 PF15070 GOLGA2L5: Putative go 60.7 3.6E+02 0.0077 32.2 24.5 27 285-311 4-30 (617)
116 KOG0964 Structural maintenance 60.5 4.5E+02 0.0097 33.3 24.9 117 217-349 631-755 (1200)
117 KOG4807 F-actin binding protei 60.3 3E+02 0.0066 31.3 20.4 79 394-486 462-540 (593)
118 PF04880 NUDE_C: NUDE protein, 59.3 15 0.00032 36.6 4.7 27 400-426 12-38 (166)
119 PF05010 TACC: Transforming ac 58.0 2.3E+02 0.005 29.2 26.0 84 255-338 7-93 (207)
120 smart00030 CLb CLUSTERIN Beta 58.0 50 0.0011 34.0 8.2 37 381-417 43-79 (206)
121 PF13894 zf-C2H2_4: C2H2-type 57.9 6.6 0.00014 25.0 1.4 20 41-63 1-20 (24)
122 PF05262 Borrelia_P83: Borreli 57.5 3.7E+02 0.0079 31.3 16.3 21 190-210 108-128 (489)
123 PF13863 DUF4200: Domain of un 57.2 1.5E+02 0.0034 27.0 14.1 26 408-433 70-95 (126)
124 PRK09039 hypothetical protein; 57.1 3E+02 0.0065 30.2 20.2 49 254-302 57-105 (343)
125 PF07106 TBPIP: Tat binding pr 57.1 59 0.0013 31.6 8.4 78 400-488 77-154 (169)
126 PF15066 CAGE1: Cancer-associa 56.9 2.1E+02 0.0045 33.2 13.4 111 254-364 387-521 (527)
127 COG1340 Uncharacterized archae 56.8 3E+02 0.0064 30.1 27.0 225 253-493 30-275 (294)
128 PLN03120 nucleic acid binding 56.0 16 0.00035 38.8 4.6 59 123-193 6-64 (260)
129 PF04012 PspA_IM30: PspA/IM30 55.3 2.3E+02 0.0051 28.4 24.4 160 295-467 25-188 (221)
130 PRK12705 hypothetical protein; 55.1 4E+02 0.0087 31.1 21.2 65 329-395 92-156 (508)
131 PLN03229 acetyl-coenzyme A car 55.0 4.8E+02 0.01 32.0 17.3 59 401-459 648-710 (762)
132 KOG0804 Cytoplasmic Zn-finger 54.9 3.9E+02 0.0085 30.9 16.2 21 328-348 347-367 (493)
133 PF06637 PV-1: PV-1 protein (P 53.6 3.6E+02 0.0078 30.6 14.3 29 399-430 353-381 (442)
134 PF15450 DUF4631: Domain of un 53.3 4.4E+02 0.0095 31.0 16.2 103 255-361 18-128 (531)
135 KOG2412 Nuclear-export-signal 52.4 4.6E+02 0.01 31.0 16.0 49 314-364 197-247 (591)
136 PLN03121 nucleic acid binding 52.2 23 0.00049 37.3 4.9 62 121-194 5-66 (243)
137 PRK10698 phage shock protein P 51.9 2.9E+02 0.0063 28.5 23.9 59 256-314 16-77 (222)
138 TIGR01069 mutS2 MutS2 family p 51.7 3E+02 0.0065 33.6 14.7 12 174-185 404-415 (771)
139 PF05667 DUF812: Protein of un 51.4 4.9E+02 0.011 31.0 22.7 165 248-429 333-529 (594)
140 PF05769 DUF837: Protein of un 51.3 2.7E+02 0.0059 28.0 19.5 40 300-339 45-95 (181)
141 TIGR01649 hnRNP-L_PTB hnRNP-L/ 50.7 25 0.00055 39.6 5.4 72 118-199 389-463 (481)
142 PF04111 APG6: Autophagy prote 50.3 2.3E+02 0.0049 30.8 12.3 52 500-558 152-204 (314)
143 PRK10884 SH3 domain-containing 48.2 2.4E+02 0.0051 29.1 11.4 23 316-338 134-156 (206)
144 COG2433 Uncharacterized conser 47.9 2.5E+02 0.0054 33.6 12.6 58 388-463 443-500 (652)
145 PF12325 TMF_TATA_bd: TATA ele 47.6 1.5E+02 0.0032 28.1 9.1 64 397-471 46-116 (120)
146 COG2433 Uncharacterized conser 47.3 2.1E+02 0.0046 34.1 12.0 37 395-434 474-510 (652)
147 PF07989 Microtub_assoc: Micro 47.2 42 0.00091 29.2 5.0 44 307-350 29-72 (75)
148 PTZ00121 MAEBL; Provisional 47.0 8.5E+02 0.018 32.5 25.2 72 289-364 1570-1641(2084)
149 KOG2129 Uncharacterized conser 46.8 5.1E+02 0.011 29.9 16.8 94 244-337 167-276 (552)
150 KOG0976 Rho/Rac1-interacting s 46.8 6.8E+02 0.015 31.3 23.8 31 333-363 174-204 (1265)
151 PF10481 CENP-F_N: Cenp-F N-te 46.7 3.1E+02 0.0068 29.8 12.1 102 357-465 29-130 (307)
152 COG0419 SbcC ATPase involved i 46.5 6.5E+02 0.014 31.0 31.3 34 393-426 422-455 (908)
153 PF10168 Nup88: Nuclear pore c 46.3 6.3E+02 0.014 30.8 17.6 27 333-359 637-663 (717)
154 PF11559 ADIP: Afadin- and alp 45.8 2.7E+02 0.0059 26.4 14.1 38 320-357 72-109 (151)
155 KOG2817 Predicted E3 ubiquitin 45.5 9.1 0.0002 42.6 0.9 10 40-49 374-383 (394)
156 PRK12704 phosphodiesterase; Pr 45.4 5.6E+02 0.012 29.9 16.9 12 542-553 274-285 (520)
157 KOG0980 Actin-binding protein 45.1 7.2E+02 0.016 31.1 29.9 62 479-548 588-651 (980)
158 PF00096 zf-C2H2: Zinc finger, 45.0 12 0.00025 24.4 1.0 20 41-63 1-20 (23)
159 TIGR01661 ELAV_HUD_SF ELAV/HuD 44.5 35 0.00076 36.0 5.1 52 123-185 271-325 (352)
160 PF11068 YlqD: YlqD protein; 44.2 1.1E+02 0.0023 29.5 7.7 86 324-432 19-104 (131)
161 PF08702 Fib_alpha: Fibrinogen 44.0 3.1E+02 0.0068 26.6 15.5 67 253-319 53-120 (146)
162 COG1842 PspA Phage shock prote 43.3 4.1E+02 0.0088 27.7 22.8 48 292-339 23-70 (225)
163 smart00360 RRM RNA recognition 42.6 31 0.00068 25.9 3.3 46 141-189 7-55 (71)
164 KOG0977 Nuclear envelope prote 42.4 6.5E+02 0.014 29.8 27.4 207 241-460 30-254 (546)
165 PF11932 DUF3450: Protein of u 41.7 4.2E+02 0.0091 27.4 13.4 55 413-471 50-104 (251)
166 PRK10803 tol-pal system protei 41.7 63 0.0014 34.0 6.3 45 404-462 56-100 (263)
167 KOG0163 Myosin class VI heavy 41.6 7.9E+02 0.017 30.6 19.9 47 309-355 891-937 (1259)
168 PRK00106 hypothetical protein; 41.6 6.5E+02 0.014 29.6 19.2 14 333-346 109-122 (535)
169 KOG4593 Mitotic checkpoint pro 41.5 7.4E+02 0.016 30.2 22.0 160 248-429 156-316 (716)
170 PF03962 Mnd1: Mnd1 family; I 41.5 2.5E+02 0.0054 28.3 10.3 69 401-472 68-138 (188)
171 PF13465 zf-H2C2_2: Zinc-finge 41.0 14 0.0003 25.5 0.9 12 36-47 10-21 (26)
172 PF05483 SCP-1: Synaptonemal c 40.9 7.6E+02 0.016 30.2 30.8 36 256-291 239-274 (786)
173 PF15236 CCDC66: Coiled-coil d 40.7 3.8E+02 0.0083 26.7 16.6 97 218-314 15-116 (157)
174 COG1579 Zn-ribbon protein, pos 40.7 4.7E+02 0.01 27.7 17.5 18 397-414 158-175 (239)
175 COG1842 PspA Phage shock prote 40.7 4.5E+02 0.0097 27.5 18.9 83 256-341 16-101 (225)
176 PLN03134 glycine-rich RNA-bind 40.5 45 0.00097 31.9 4.6 56 123-190 36-94 (144)
177 PF10234 Cluap1: Clusterin-ass 40.5 5E+02 0.011 28.0 13.8 109 236-353 114-222 (267)
178 KOG1103 Predicted coiled-coil 40.2 5.9E+02 0.013 28.7 21.7 55 307-361 100-154 (561)
179 TIGR01005 eps_transp_fam exopo 40.2 6.8E+02 0.015 30.0 15.3 59 257-315 288-346 (754)
180 PF00769 ERM: Ezrin/radixin/mo 40.1 4.6E+02 0.01 27.5 15.7 67 298-364 14-86 (246)
181 PRK09343 prefoldin subunit bet 39.5 3.3E+02 0.0071 25.5 12.6 80 411-495 27-115 (121)
182 COG5109 Uncharacterized conser 39.1 13 0.00028 40.6 0.8 14 37-50 373-386 (396)
183 KOG4673 Transcription factor T 38.2 8.4E+02 0.018 29.9 26.9 31 247-277 343-373 (961)
184 KOG4212 RNA-binding protein hn 38.2 47 0.001 37.9 4.9 66 124-199 47-113 (608)
185 cd07647 F-BAR_PSTPIP The F-BAR 38.2 4.6E+02 0.01 26.9 20.3 125 301-431 93-219 (239)
186 PF05622 HOOK: HOOK protein; 37.7 11 0.00024 44.8 0.0 20 77-96 71-90 (713)
187 KOG0247 Kinesin-like protein [ 37.5 8.8E+02 0.019 29.9 15.3 31 240-270 480-510 (809)
188 KOG4360 Uncharacterized coiled 37.2 7.7E+02 0.017 29.2 14.8 28 406-433 237-268 (596)
189 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.1 3.6E+02 0.0078 25.4 16.3 48 317-364 62-109 (132)
190 PRK01156 chromosome segregatio 37.1 8.6E+02 0.019 29.7 32.2 16 136-151 102-117 (895)
191 PF04810 zf-Sec23_Sec24: Sec23 37.0 22 0.00047 27.1 1.5 16 33-48 17-32 (40)
192 PF01576 Myosin_tail_1: Myosin 36.9 11 0.00025 45.8 0.0 80 285-364 105-191 (859)
193 PRK00398 rpoP DNA-directed RNA 36.3 23 0.0005 27.4 1.6 11 39-49 20-30 (46)
194 TIGR02894 DNA_bind_RsfA transc 35.8 4.7E+02 0.01 26.3 11.5 57 414-488 99-155 (161)
195 PRK00732 fliE flagellar hook-b 35.7 1.7E+02 0.0037 27.0 7.3 69 230-309 33-101 (102)
196 PF13912 zf-C2H2_6: C2H2-type 35.0 20 0.00044 24.2 1.0 21 40-63 1-21 (27)
197 KOG2072 Translation initiation 34.9 1E+03 0.022 29.9 21.3 19 332-350 568-586 (988)
198 KOG0533 RRM motif-containing p 34.8 54 0.0012 34.6 4.5 68 121-200 83-152 (243)
199 PF14197 Cep57_CLD_2: Centroso 34.6 3E+02 0.0065 23.7 9.0 69 274-343 1-69 (69)
200 PTZ00464 SNF-7-like protein; P 34.3 5.4E+02 0.012 26.6 14.6 21 330-350 16-36 (211)
201 KOG0995 Centromere-associated 34.3 8.7E+02 0.019 29.0 29.1 51 230-283 204-254 (581)
202 COG4942 Membrane-bound metallo 34.1 7.7E+02 0.017 28.3 22.9 34 417-454 215-248 (420)
203 PHA00616 hypothetical protein 33.9 14 0.0003 29.3 0.0 22 40-64 1-22 (44)
204 PF14817 HAUS5: HAUS augmin-li 33.9 5E+02 0.011 31.2 12.6 83 245-327 74-162 (632)
205 PF15254 CCDC14: Coiled-coil d 33.7 1E+03 0.022 29.6 16.7 95 380-493 454-549 (861)
206 PF09787 Golgin_A5: Golgin sub 33.3 8.1E+02 0.018 28.3 26.5 55 417-473 367-421 (511)
207 PF14932 HAUS-augmin3: HAUS au 32.9 3.4E+02 0.0073 28.5 10.0 105 403-518 69-178 (256)
208 PF04065 Not3: Not1 N-terminal 32.7 6.1E+02 0.013 26.7 17.0 179 262-470 6-189 (233)
209 PTZ00332 paraflagellar rod pro 32.6 8.9E+02 0.019 28.6 22.1 87 313-435 305-393 (589)
210 PRK12728 fliE flagellar hook-b 32.4 1.6E+02 0.0035 27.1 6.6 38 271-309 64-101 (102)
211 PF14354 Lar_restr_allev: Rest 32.4 20 0.00044 28.9 0.8 10 41-51 4-13 (61)
212 PF04508 Pox_A_type_inc: Viral 32.1 45 0.00098 23.2 2.3 18 396-413 2-19 (23)
213 PF15619 Lebercilin: Ciliary p 32.0 5.6E+02 0.012 26.1 17.8 83 256-345 60-142 (194)
214 smart00531 TFIIE Transcription 31.6 25 0.00054 33.7 1.4 13 37-49 120-132 (147)
215 PRK13182 racA polar chromosome 31.5 2.5E+02 0.0053 28.2 8.3 34 380-413 110-143 (175)
216 PF15358 TSKS: Testis-specific 31.4 2.6E+02 0.0056 32.0 9.1 52 240-291 108-159 (558)
217 PF12718 Tropomyosin_1: Tropom 31.4 4.9E+02 0.011 25.1 16.0 26 390-415 68-93 (143)
218 PF07111 HCR: Alpha helical co 31.2 1.1E+03 0.023 29.0 22.4 104 342-468 118-221 (739)
219 KOG0018 Structural maintenance 30.8 1.3E+03 0.027 29.8 26.7 73 413-489 403-475 (1141)
220 PF11577 NEMO: NF-kappa-B esse 30.8 3.5E+02 0.0077 23.4 8.2 51 313-363 5-55 (68)
221 PF05129 Elf1: Transcription e 30.5 21 0.00045 31.4 0.6 14 36-49 18-31 (81)
222 KOG2072 Translation initiation 29.6 1.2E+03 0.026 29.2 21.5 25 388-412 670-694 (988)
223 PRK03907 fliE flagellar hook-b 29.5 1.9E+02 0.0042 26.5 6.6 37 272-309 60-96 (97)
224 PF10058 DUF2296: Predicted in 29.4 28 0.00061 28.5 1.1 15 33-47 37-51 (54)
225 smart00400 ZnF_CHCC zinc finge 29.3 73 0.0016 25.4 3.5 36 27-66 10-45 (55)
226 PF07464 ApoLp-III: Apolipopho 29.3 94 0.002 30.7 4.9 94 242-335 23-120 (155)
227 TIGR00219 mreC rod shape-deter 29.3 1.4E+02 0.0029 32.0 6.5 44 392-435 70-114 (283)
228 COG0724 RNA-binding proteins ( 29.1 95 0.0021 29.6 4.9 61 121-192 115-178 (306)
229 cd00590 RRM RRM (RNA recogniti 29.1 1.2E+02 0.0025 23.0 4.6 54 124-189 2-57 (74)
230 TIGR00205 fliE flagellar hook- 29.1 2.5E+02 0.0054 26.2 7.4 39 270-309 70-108 (108)
231 PRK06569 F0F1 ATP synthase sub 28.9 5.9E+02 0.013 25.3 15.0 19 384-402 113-131 (155)
232 COG5185 HEC1 Protein involved 28.8 1E+03 0.022 28.0 26.8 141 245-404 252-412 (622)
233 TIGR03655 anti_R_Lar restricti 28.2 26 0.00057 28.0 0.8 10 42-51 3-12 (53)
234 PF03670 UPF0184: Uncharacteri 28.0 2.2E+02 0.0047 25.7 6.4 48 259-306 28-75 (83)
235 PTZ00491 major vault protein; 28.0 9.4E+02 0.02 30.0 13.6 23 411-433 757-779 (850)
236 PF04059 RRM_2: RNA recognitio 27.9 1.8E+02 0.0039 26.5 6.1 59 123-196 3-66 (97)
237 PF08826 DMPK_coil: DMPK coile 27.9 2.3E+02 0.005 24.0 6.3 52 406-462 5-57 (61)
238 PRK10884 SH3 domain-containing 27.8 6.9E+02 0.015 25.7 13.1 17 204-221 66-82 (206)
239 PLN02678 seryl-tRNA synthetase 27.7 3.7E+02 0.0079 30.9 9.9 54 437-508 71-133 (448)
240 PF07889 DUF1664: Protein of u 27.6 5.6E+02 0.012 24.6 13.8 95 243-338 29-123 (126)
241 PRK01699 fliE flagellar hook-b 27.5 2.7E+02 0.0058 25.7 7.1 37 272-309 62-98 (99)
242 KOG2264 Exostosin EXT1L [Signa 27.2 2.6E+02 0.0056 33.3 8.5 46 384-432 75-120 (907)
243 TIGR01661 ELAV_HUD_SF ELAV/HuD 27.1 92 0.002 32.8 4.8 48 123-181 5-55 (352)
244 TIGR03185 DNA_S_dndD DNA sulfu 27.1 1.1E+03 0.024 27.9 28.4 23 147-171 135-157 (650)
245 PF10473 CENP-F_leu_zip: Leuci 27.1 6E+02 0.013 24.8 18.3 61 314-374 38-101 (140)
246 PF09731 Mitofilin: Mitochondr 27.0 1E+03 0.022 27.5 22.1 19 397-415 380-398 (582)
247 PF13909 zf-H2C2_5: C2H2-type 26.9 31 0.00066 22.8 0.8 19 41-63 1-19 (24)
248 PF10458 Val_tRNA-synt_C: Valy 26.8 3E+02 0.0064 23.0 6.8 25 402-429 4-28 (66)
249 KOG1150 Predicted molecular ch 26.8 3.6E+02 0.0077 28.3 8.6 46 315-367 162-210 (250)
250 PRK01156 chromosome segregatio 26.5 1.2E+03 0.027 28.3 30.5 31 314-344 465-495 (895)
251 PF01576 Myosin_tail_1: Myosin 26.5 22 0.00047 43.5 0.0 71 413-487 322-392 (859)
252 PF06705 SF-assemblin: SF-asse 26.5 7.3E+02 0.016 25.6 26.5 135 294-444 61-200 (247)
253 PF04111 APG6: Autophagy prote 26.4 8.6E+02 0.019 26.4 12.7 14 545-558 263-278 (314)
254 PF14662 CCDC155: Coiled-coil 26.3 7.4E+02 0.016 25.6 23.1 72 304-376 51-125 (193)
255 PF05266 DUF724: Protein of un 26.0 6E+02 0.013 25.8 10.1 15 418-432 137-151 (190)
256 KOG0962 DNA repair protein RAD 26.0 1.6E+03 0.035 29.4 25.0 62 267-328 888-952 (1294)
257 COG0576 GrpE Molecular chapero 25.8 5E+02 0.011 26.3 9.5 55 460-520 93-156 (193)
258 KOG4005 Transcription factor X 25.8 7.6E+02 0.016 26.5 10.8 86 340-474 72-157 (292)
259 COG4026 Uncharacterized protei 25.8 2.9E+02 0.0063 29.3 7.8 63 390-453 144-207 (290)
260 KOG1265 Phospholipase C [Lipid 25.7 1.5E+03 0.032 28.9 18.2 143 245-414 1025-1176(1189)
261 KOG1937 Uncharacterized conser 25.6 1.1E+03 0.024 27.5 21.5 55 305-359 347-409 (521)
262 PF11559 ADIP: Afadin- and alp 25.5 5.9E+02 0.013 24.2 16.2 13 216-228 14-26 (151)
263 PF11544 Spc42p: Spindle pole 25.5 1.5E+02 0.0033 26.2 4.9 32 442-473 3-34 (76)
264 PF04849 HAP1_N: HAP1 N-termin 25.3 9.4E+02 0.02 26.5 23.4 59 392-461 231-289 (306)
265 PF06705 SF-assemblin: SF-asse 25.2 7.7E+02 0.017 25.5 24.7 34 420-453 205-238 (247)
266 PF01093 Clusterin: Clusterin; 25.1 2.7E+02 0.0059 31.9 8.1 36 382-417 38-73 (436)
267 PF10146 zf-C4H2: Zinc finger- 24.8 8.3E+02 0.018 25.6 14.3 22 296-317 32-53 (230)
268 COG5533 UBP5 Ubiquitin C-termi 24.5 47 0.001 36.5 2.0 28 16-49 266-293 (415)
269 KOG1962 B-cell receptor-associ 24.5 7.9E+02 0.017 25.8 10.7 31 322-352 152-182 (216)
270 PF00038 Filament: Intermediat 24.4 8.4E+02 0.018 25.6 27.0 166 294-490 45-220 (312)
271 PF03904 DUF334: Domain of unk 24.3 8.7E+02 0.019 25.7 14.2 84 251-339 47-138 (230)
272 PF02049 FliE: Flagellar hook- 24.3 2.5E+02 0.0054 25.1 6.3 38 271-309 58-95 (96)
273 cd00350 rubredoxin_like Rubred 24.3 34 0.00074 25.0 0.7 14 38-51 15-28 (33)
274 TIGR02977 phageshock_pspA phag 24.2 7.7E+02 0.017 25.1 21.8 59 256-314 16-77 (219)
275 PF07111 HCR: Alpha helical co 24.1 1.4E+03 0.03 28.1 25.0 148 280-433 117-277 (739)
276 TIGR03017 EpsF chain length de 24.1 9.9E+02 0.022 26.3 15.2 57 256-312 253-309 (444)
277 PRK00253 fliE flagellar hook-b 23.9 4.9E+02 0.011 24.2 8.3 37 272-309 71-107 (108)
278 PF10186 Atg14: UV radiation r 23.9 8E+02 0.017 25.1 18.8 27 390-416 121-147 (302)
279 PF04012 PspA_IM30: PspA/IM30 23.9 7.5E+02 0.016 24.8 18.8 87 256-345 15-104 (221)
280 KOG0804 Cytoplasmic Zn-finger 23.9 1.2E+03 0.026 27.2 16.7 22 414-435 430-452 (493)
281 COG0172 SerS Seryl-tRNA synthe 23.8 5.3E+02 0.012 29.6 10.1 54 439-510 70-132 (429)
282 PRK00790 fliE flagellar hook-b 23.8 2.3E+02 0.005 26.5 6.1 37 272-309 72-108 (109)
283 PF03804 DUF325: Viral domain 23.6 53 0.0012 28.3 1.8 25 496-520 31-55 (71)
284 PF10805 DUF2730: Protein of u 23.4 3E+02 0.0064 25.2 6.7 42 431-472 58-100 (106)
285 KOG2606 OTU (ovarian tumor)-li 22.9 3.6E+02 0.0079 29.5 8.2 30 395-424 45-74 (302)
286 PF13913 zf-C2HC_2: zinc-finge 22.9 51 0.0011 22.8 1.3 20 40-63 2-21 (25)
287 PF07899 Frigida: Frigida-like 22.7 2E+02 0.0043 31.1 6.3 44 370-413 234-281 (290)
288 PF12344 UvrB: Ultra-violet re 22.6 1.2E+02 0.0025 24.3 3.3 24 281-304 4-30 (44)
289 KOG0127 Nucleolar protein fibr 22.5 99 0.0021 36.3 4.1 63 121-196 117-179 (678)
290 KOG2903 Predicted glutathione 22.5 41 0.00088 36.2 1.1 23 589-611 110-132 (319)
291 PF04094 DUF390: Protein of un 22.3 1.5E+03 0.033 27.9 17.9 111 241-352 412-529 (828)
292 KOG3214 Uncharacterized Zn rib 22.3 36 0.00078 31.6 0.6 16 36-51 19-34 (109)
293 PF09727 CortBP2: Cortactin-bi 22.3 8.7E+02 0.019 25.0 14.9 45 313-357 133-177 (192)
294 PF02994 Transposase_22: L1 tr 22.2 1.6E+02 0.0035 32.6 5.7 15 397-411 174-188 (370)
295 PF00301 Rubredoxin: Rubredoxi 22.0 40 0.00086 27.0 0.7 14 38-51 32-45 (47)
296 PF09787 Golgin_A5: Golgin sub 21.9 1.3E+03 0.027 26.7 24.1 88 312-411 205-297 (511)
297 TIGR01642 U2AF_lg U2 snRNP aux 21.9 1.3E+02 0.0028 33.6 5.0 47 123-180 297-346 (509)
298 PF07246 Phlebovirus_NSM: Phle 21.7 4.7E+02 0.01 28.2 8.6 84 395-490 151-234 (264)
299 PF02994 Transposase_22: L1 tr 21.5 1.6E+02 0.0036 32.5 5.6 31 440-470 140-170 (370)
300 TIGR01659 sex-lethal sex-letha 21.4 1.3E+02 0.0029 33.0 4.8 49 121-180 193-244 (346)
301 cd07623 BAR_SNX1_2 The Bin/Amp 21.3 5.4E+02 0.012 26.3 8.9 60 213-276 83-142 (224)
302 KOG0995 Centromere-associated 21.1 1.5E+03 0.032 27.2 28.1 90 258-347 267-365 (581)
303 PF02841 GBP_C: Guanylate-bind 20.8 1E+03 0.022 25.3 16.2 20 325-344 229-248 (297)
304 TIGR01622 SF-CC1 splicing fact 20.7 1.5E+02 0.0032 32.8 5.0 48 123-180 91-140 (457)
305 KOG4403 Cell surface glycoprot 20.5 1.1E+03 0.023 27.5 11.4 48 440-487 305-369 (575)
306 PF14988 DUF4515: Domain of un 20.4 9.4E+02 0.02 24.7 24.3 58 256-313 21-78 (206)
307 TIGR01010 BexC_CtrB_KpsE polys 20.2 1.1E+03 0.024 25.4 11.6 75 231-310 193-267 (362)
308 COG4985 ABC-type phosphate tra 20.1 1.1E+03 0.024 25.3 10.8 17 210-226 138-154 (289)
309 PF13094 CENP-Q: CENP-Q, a CEN 20.1 6.5E+02 0.014 24.2 8.7 50 315-365 21-70 (160)
310 TIGR01628 PABP-1234 polyadenyl 20.1 1.4E+02 0.003 34.2 4.7 50 123-183 90-141 (562)
311 KOG0972 Huntingtin interacting 20.0 5.3E+02 0.012 28.4 8.7 103 229-333 244-354 (384)
No 1
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=100.00 E-value=4.9e-65 Score=471.20 Aligned_cols=132 Identities=68% Similarity=1.166 Sum_probs=131.3
Q ss_pred eecCCCCChHHHHHHHhhcChhhHHHHHHHHHHHHHhhhcCCCCcccEEEEeCCccccccccccHHHHHHHHHhcHHHHH
Q 006597 504 KRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYI 583 (639)
Q Consensus 504 KrmGeld~kpF~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~WhPFk~v~v~g~~keii~edD~kL~~Lk~e~Geev~~ 583 (639)
||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.++|||+||+||++||++||+|||+
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~ 80 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYN 80 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccccccccccCcccchHHHHHHHHHHHHHhhhhc
Q 006597 584 AVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRK 635 (639)
Q Consensus 584 aV~~Al~E~neyN~sgry~v~eLWN~ke~rkAtl~E~v~~~~~~~k~~k~kr 635 (639)
||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus 81 aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr 132 (132)
T PF03469_consen 81 AVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR 132 (132)
T ss_pred HHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999997
No 2
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=3.4e-45 Score=333.84 Aligned_cols=115 Identities=53% Similarity=0.990 Sum_probs=88.3
Q ss_pred CCceeeecceEEEeecccccc-CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHH
Q 006597 114 HDEKFVWPWTGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFE 192 (639)
Q Consensus 114 ~de~iVWPwmgII~Ni~t~e~-~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fe 192 (639)
+|++|||||||||+||+| ++ ++|+++|+|++.|+++|+. |+|.+|+||||+.||+|+|||+|++||+||+||++||
T Consensus 1 qdd~~VWPwmgIi~N~~~-~~~~~g~~~g~~~~~l~~~l~~--f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPT-EKDDDGRWVGMSNEELLDKLAE--FNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp ---EEEES-EEEEE-----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCcc-ccCCCCceeccCHHHHHHHHHh--cCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 589999999999999999 55 6999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcc
Q 006597 193 KAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII 231 (639)
Q Consensus 193 k~Fe~~~~GRkdW~~~~~~~~~LYGWvAradDy~~~~~i 231 (639)
+||+.+||||+||.+++..+++||||||++|||++.|||
T Consensus 78 ~~F~~~~~Gr~dW~~~~~~~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 78 KHFEAQGHGRKDWERRRGGGSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHHHHTT-SHHHHT-SSS---S-EEEE-BHHHHHSSSHH
T ss_pred HHHHHcCCCHHHHhhccCCCCceeeeeCchhhccCCCCC
Confidence 999999999999999887899999999999999999986
No 3
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.71 E-value=3.1e-18 Score=131.02 Aligned_cols=43 Identities=67% Similarity=1.175 Sum_probs=40.2
Q ss_pred ccCCCCCCccccccHHHHhhhhcCCCCCCcccchHHHHhHHHHH
Q 006597 43 CPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALA 86 (639)
Q Consensus 43 CP~C~gkkK~~y~~~~LLqHA~gvg~~ss~R~a~k~ka~H~aLa 86 (639)
||||+|++|++|.|+||||||+|||++++.|++ +++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~-k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSA-KEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchH-HHHHhhhhhC
Confidence 999999999999999999999999977777777 9999999996
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.78 E-value=2.1 Score=51.93 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=12.6
Q ss_pred CchhHHHHHHhcCCCCc
Q 006597 143 SGSKLRDELIRRGFNPT 159 (639)
Q Consensus 143 s~~~L~d~f~~~GF~p~ 159 (639)
+...+.+.|...||.|.
T Consensus 118 ~~~~~~~~l~~~~~~~~ 134 (1164)
T TIGR02169 118 RLSEIHDFLAAAGIYPE 134 (1164)
T ss_pred cHHHHHHHHHHcCCCcC
Confidence 56778888888777663
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.64 E-value=0.89 Score=58.94 Aligned_cols=223 Identities=17% Similarity=0.200 Sum_probs=105.1
Q ss_pred cceeeeeccCCC------CCCCcchhhhhcccCCCCHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 006597 214 GLYAWVARSDDY------NLKNIIGDHLRKIGDLKTISEMME-----EE--ARKQNLLVSNLTNMIEVKDKHLEEMKERF 280 (639)
Q Consensus 214 ~LYGWvAradDy------~~~~~iG~~LrK~gdLKTi~ei~~-----E~--~rk~~~lv~~L~n~I~~knk~l~elE~k~ 280 (639)
..=||+|+.+=. .+--+|.+..|.+..||+-+=.-- .. ..++...+.....+|......++..|.+.
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~ 861 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKR 861 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445777776533 333478899999988886543110 00 01222333333444444444445555555
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHH
Q 006597 281 TETSNSVEKLMEEKDRLLQSYNEE---------IKKIQLSARDHFQRIFT-------DHEKLKLQLESQKKELELRGEEL 344 (639)
Q Consensus 281 ~e~s~sL~r~meEkd~l~~~yneE---------i~kmQ~~a~~~~~~i~~-------e~ekl~~eLe~k~~eL~~r~~~L 344 (639)
++......++..++-.|......| +..--...+..+++++. +.+.....|+.++++++..+..|
T Consensus 862 ~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l 941 (1930)
T KOG0161|consen 862 KELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQEL 941 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443333332222 22222222223333322 23334445555666666666666
Q ss_pred HHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHH
Q 006597 345 EKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQL----DAKQALALE 420 (639)
Q Consensus 345 ~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL----~~kQ~LELE 420 (639)
.+.-..-+..+.+++.|+.....+...|.-+...+...-..+.+........-..+...+...|.++ ..+.+||-.
T Consensus 942 ~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~ 1021 (1930)
T KOG0161|consen 942 KEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQ 1021 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666655555555555554444333333322222221111222223333333333 345666666
Q ss_pred HHHhhhhhhhhhccCC
Q 006597 421 IERLKGSLNVMKHMGD 436 (639)
Q Consensus 421 i~qLkG~L~VmKhm~~ 436 (639)
+..|.+.|+=.+.+..
T Consensus 1022 l~~le~~le~e~~~r~ 1037 (1930)
T KOG0161|consen 1022 LDDLEVTLEREKRIRM 1037 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666555444
No 6
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.48 E-value=1.2 Score=53.37 Aligned_cols=218 Identities=26% Similarity=0.381 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006597 259 VSNLTNMIEVKDKHLEEMKERFT---------ETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQ 329 (639)
Q Consensus 259 v~~L~n~I~~knk~l~elE~k~~---------e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~e 329 (639)
+.+|..++..+.+.+..+..++. ....+|.....+++++....++....-.+-..+-....=.++..|+..
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~ 480 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK 480 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777776 344666667777777777665443221111122222222333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHH
Q 006597 330 LESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKK--QKEDLHNRIIQL 407 (639)
Q Consensus 330 Le~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkr--Eke~~~~kil~L 407 (639)
+++--.+|..+.-+|....- +--+|..-..|+ .+.+.-+.++=.+..+.+-+|...+++ ...+...+|..|
T Consensus 481 ~~~LQ~eLsEk~~~l~~~ke----e~s~l~s~~~K~---~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~L 553 (775)
T PF10174_consen 481 LESLQKELSEKELQLEDAKE----EASKLASSQEKK---DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQL 553 (775)
T ss_pred HHHHhhhhHHHHHHHHHhhh----HHHHHhhccchh---hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHH
Confidence 33333333333333332111 111222222222 334444555555666667777776665 234566778888
Q ss_pred HHHHhHHH----HHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HhhcchHH
Q 006597 408 EKQLDAKQ----ALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIR--ERKSNDEL 481 (639)
Q Consensus 408 ekqL~~kQ----~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~k--er~sndEL 481 (639)
|+.....- +-..||.+|.+-|.-+-- +-...-++|..|..+|++--..+......++++-+. +|++..+|
T Consensus 554 e~ev~~~~ee~~kaq~EVERLl~~L~~~E~----EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~ell 629 (775)
T PF10174_consen 554 EQEVTRYREESEKAQAEVERLLDILREAEN----EKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELL 629 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHH
Confidence 88654332 224677777764443222 111233678888888877776676666666665555 88899999
Q ss_pred HHHHHH
Q 006597 482 QDARKE 487 (639)
Q Consensus 482 q~ARk~ 487 (639)
.+|+++
T Consensus 630 eea~Re 635 (775)
T PF10174_consen 630 EEALRE 635 (775)
T ss_pred HHHHhh
Confidence 999983
No 7
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.38 E-value=2.3 Score=51.84 Aligned_cols=172 Identities=22% Similarity=0.240 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHH-------------------------
Q 006597 244 ISEMMEEEARKQNLLV--SNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDR------------------------- 296 (639)
Q Consensus 244 i~ei~~E~~rk~~~lv--~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~------------------------- 296 (639)
-.+|..++.++....- +.|..+|-.-++.+..|+.-....-..+..+|+|+-.
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~e 358 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELE 358 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhh
Confidence 3456666666554444 6677777777777777777766666666666666411
Q ss_pred ----------HHH--HHHHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 006597 297 ----------LLQ--SYNEEIKKIQLSARDH---------FQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDR 355 (639)
Q Consensus 297 ----------l~~--~yneEi~kmQ~~a~~~---------~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er 355 (639)
|-. +|.-+|..-.-.+.-| ...=.-+.++...-|+-+-..|+.|-.++.++-++.+..-
T Consensus 359 n~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~ 438 (1195)
T KOG4643|consen 359 NESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE 438 (1195)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2333322211111111 0111112222333344444555556666667777777777
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006597 356 KILAEEIEKNAMRNNSLQLASLVQQ---KADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQ 415 (639)
Q Consensus 356 ~kl~~e~~kn~~~~~~l~lA~~eQ~---kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ 415 (639)
++|..|.++--..++++..+.-+|+ .++..++.+...+..+-++++++|..|-+-|...+
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~ 501 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRD 501 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887777888888888874 45566788888888899999999888887776654
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=4.3 Score=50.28 Aligned_cols=247 Identities=22% Similarity=0.284 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006597 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQS------YNEEIKKIQLSARDHFQRIFTDHEKLKL 328 (639)
Q Consensus 255 ~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~------yneEi~kmQ~~a~~~~~~i~~e~ekl~~ 328 (639)
-....+.++|....-.+..+++|...-..-..|.++.....++-.. -..|+++|=..++..+++.-.+.++|..
T Consensus 375 ~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~ 454 (1293)
T KOG0996|consen 375 IKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEE 454 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHH
Confidence 4556666777777777777777777766666666665554333322 2346778888888888888888889988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 329 QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLE 408 (639)
Q Consensus 329 eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~Le 408 (639)
.++.-.++|+.-...|++...---.++.+++.++..-. ..+.-|.-+-+-|....--|. .-.+.+.++...|.
T Consensus 455 ~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~---~~~n~~~~e~~vaesel~~L~----~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 455 LLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLL---KQVNEARSELDVAESELDILL----SRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 88888888887766666655555555666665554421 122223333333332222222 22345666777777
Q ss_pred HHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHhhcchHHH
Q 006597 409 KQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLI--IRERKSNDELQ 482 (639)
Q Consensus 409 kqL~~----kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li--~ker~sndELq 482 (639)
.+|.+ .++.--++-.+++.|+=+|. ++.+..++|...-.++..+...-+.+. +-|.+++-.-+
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~-----------e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~ 596 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQ-----------ELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS 596 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77766 34444444444444443222 233333333333333322222222222 12233332223
Q ss_pred HHHHHHHHHHhhc--cCcccccce-ecCCC---CCh---HHHHHHHh
Q 006597 483 DARKELINALKEL--SGRAHIGLK-RMGEL---DNK---PFLEVMNR 520 (639)
Q Consensus 483 ~ARk~lI~~l~~~--~~~~~IgiK-rmGel---d~k---pF~~ac~~ 520 (639)
--|-++++.|..+ +|+ .=||. |+|.| |.+ +|..||.+
T Consensus 597 ~s~~kVl~al~r~kesG~-i~Gf~GRLGDLg~Id~kYDvAIsTac~~ 642 (1293)
T KOG0996|consen 597 RSRNKVLDALMRLKESGR-IPGFYGRLGDLGAIDEKYDVAISTACAR 642 (1293)
T ss_pred hhhhHHHHHHHHHHHcCC-CCccccccccccccchHHHHHHHHhccc
Confidence 3333567777655 443 22333 77665 443 67778865
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.21 E-value=3.4 Score=47.71 Aligned_cols=68 Identities=26% Similarity=0.387 Sum_probs=43.0
Q ss_pred hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 006597 236 RKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNE 303 (639)
Q Consensus 236 rK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yne 303 (639)
+...+|.........+.......|..|...+....+....|+..+..++.+...+-+|++.|...+.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555666666777777777777777777777777777777777666655444
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.05 E-value=5.4 Score=48.53 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=12.8
Q ss_pred HhhhhhHHHHHHHHHHHHhhcchHHHHHHHHH
Q 006597 457 EGELDDLEALNQTLIIRERKSNDELQDARKEL 488 (639)
Q Consensus 457 ~~el~~~e~lnq~Li~ker~sndELq~ARk~l 488 (639)
..+++.++.....+-..-.....+|+..+..+
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l 485 (1164)
T TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444455544443
No 11
>PRK11637 AmiB activator; Provisional
Probab=96.00 E-value=3.4 Score=45.81 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc
Q 006597 386 VRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKH 433 (639)
Q Consensus 386 vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh 433 (639)
...+++..+..+.++.....+|+.++...+.+.-+.++-+..|+..+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888888888888888888888876654
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.85 E-value=9.9 Score=49.92 Aligned_cols=48 Identities=25% Similarity=0.372 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 006597 415 QALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEAL 466 (639)
Q Consensus 415 Q~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~l 466 (639)
+.+|-.+..|.|.|..+. +...+++.++++|...|..++.++..|.+-
T Consensus 1037 ~e~Ek~~rkle~el~~~~----e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1037 MELEKAKRKLEGELKDLQ----ESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred HHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444446777774433 244557888899999999999988777653
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.83 E-value=7.5 Score=48.37 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQR 318 (639)
Q Consensus 254 k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~ 318 (639)
..+.-+.+|...-+-.-.+-+..+..+.++..++..+.++...++..-.++-++++..+.+.+++
T Consensus 303 ~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 303 PKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 34455566655544444444555556666666666666666666666666666666555554444
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.77 E-value=6 Score=49.71 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 006597 446 METVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELIN 490 (639)
Q Consensus 446 i~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~ 490 (639)
++...+.+......+..++..-+.+-..-.+..++|+.+|.++-.
T Consensus 478 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 522 (1201)
T PF12128_consen 478 LEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEE 522 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555555566677777665433
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.70 E-value=8.6 Score=48.15 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHH-------------hhc-c-Ccccccceec
Q 006597 442 VLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINAL-------------KEL-S-GRAHIGLKRM 506 (639)
Q Consensus 442 ~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l-------------~~~-~-~~~~IgiKrm 506 (639)
....+..+.+.+++-.+.+..++.--..+-.+.+...++++.++..+..-- ... + ....+| ++
T Consensus 444 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G--~v 521 (1163)
T COG1196 444 LNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYG--PV 521 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccc--hH
Confidence 334455566666666666666666666666677777788887776543311 000 0 111122 44
Q ss_pred CCC--CChHHHHHHHhhcCh------hhHHHHHHHHHHHHHh-hhcCCCCcccEEEEeCCcc------------cccccc
Q 006597 507 GEL--DNKPFLEVMNRKYNE------EEAEERASELCSLWEE-YLKDPDWHPFKVITAEGKH------------KEIINE 565 (639)
Q Consensus 507 Gel--d~kpF~~ac~~k~~~------~~~~~~a~~l~s~Wq~-~l~dp~WhPFk~v~v~g~~------------keii~e 565 (639)
|+| -...|..|+-.=.+. -+-+..|......|-. .+.-.+.-|-..|...... -.+|+-
T Consensus 522 ~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~ 601 (1163)
T COG1196 522 AELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDF 601 (1163)
T ss_pred HHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcC
Confidence 444 222455444332221 1334456777777865 5666666665555422221 146776
Q ss_pred ccHHHHHHHHHhcHH-HHHHHHHHHHHHhhhcC
Q 006597 566 EDEKLKGLKKEMGEE-VYIAVTTALVEINEYNP 597 (639)
Q Consensus 566 dD~kL~~Lk~e~Gee-v~~aV~~Al~E~neyN~ 597 (639)
|+.--.-+..-+|.- |+.-+..|..-...+.+
T Consensus 602 d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~ 634 (1163)
T COG1196 602 DPKYEPAVRFVLGDTLVVDDLEQARRLARKLRI 634 (1163)
T ss_pred CHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCC
Confidence 663333355555543 23335555555555533
No 16
>PRK11637 AmiB activator; Provisional
Probab=95.38 E-value=4.3 Score=44.99 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 006597 318 RIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILA 359 (639)
Q Consensus 318 ~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~ 359 (639)
.+++.....+.+|++++.+|+..-.+|..+.+....++..|+
T Consensus 170 ~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~ 211 (428)
T PRK11637 170 ETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLE 211 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555444444444444443
No 17
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.33 E-value=9.5 Score=46.24 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=6.0
Q ss_pred HHHHHHHHHhcH
Q 006597 568 EKLKGLKKEMGE 579 (639)
Q Consensus 568 ~kL~~Lk~e~Ge 579 (639)
..|+..-..+|.
T Consensus 968 ~~l~~~i~~lg~ 979 (1179)
T TIGR02168 968 EEARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 344544455554
No 18
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.14 E-value=10 Score=45.61 Aligned_cols=132 Identities=16% Similarity=0.236 Sum_probs=70.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH----HHHHHHHHHHH-------hhhhchHHHHHHHHHhhhHHH
Q 006597 318 RIFTDHEKLKLQLESQKKELELRGEELEKRETQNEND----RKILAEEIEKN-------AMRNNSLQLASLVQQKADENV 386 (639)
Q Consensus 318 ~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~e----r~kl~~e~~kn-------~~~~~~l~lA~~eQ~kade~v 386 (639)
.-..+++-+..+|+.+|+.|+.|..-|.+--.+-+.- .+-|+.+++-- ..-...|+++.++-...--++
T Consensus 256 E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadi 335 (1265)
T KOG0976|consen 256 EQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI 335 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677788889999999999887765322222111 12222222221 111455666666543333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhh
Q 006597 387 RKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGEL 460 (639)
Q Consensus 387 lkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el 460 (639)
---.-++++--|-+-++..+|||+-|. +++.+..++.+++-. .+.+..+-++..++++.++++
T Consensus 336 rc~LlEarrk~egfddk~~eLEKkrd~---al~dvr~i~e~k~nv--------e~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 336 RCALLEARRKAEGFDDKLNELEKKRDM---ALMDVRSIQEKKENV--------EEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHH---HHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667777788888887663 444444444443311 122444555666666666555
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.82 E-value=13 Score=45.11 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=11.5
Q ss_pred HHHHHhhhcCCCCccccc
Q 006597 588 ALVEINEYNPSGRYITSE 605 (639)
Q Consensus 588 Al~E~neyN~sgry~v~e 605 (639)
|...+..+.+.|+.+.+.
T Consensus 634 a~~~~~~~~~~g~~v~~~ 651 (1179)
T TIGR02168 634 ALELAKKLRPGYRIVTLD 651 (1179)
T ss_pred HHHHHHHcCCCceEEecC
Confidence 666666666777665543
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.50 E-value=12 Score=43.39 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 006597 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (639)
Q Consensus 400 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~Vm 431 (639)
+-..+.+++..+...+.++.|...|+.+|..+
T Consensus 264 Lk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~ 295 (546)
T PF07888_consen 264 LKETVVQLKQEETQAQQLQQENEALKEQLRSA 295 (546)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555544
No 21
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.41 E-value=17 Score=44.76 Aligned_cols=120 Identities=28% Similarity=0.352 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHH-------------HHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006597 330 LESQKKELELRG-------------EELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQ 396 (639)
Q Consensus 330 Le~k~~eL~~r~-------------~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrE 396 (639)
|+.+.+.|..|+ ++|+.++-+++.+|.++++-.+.| +.|+++. +| =.--+.|..-| -|
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn----stLq~q~-eq---L~~~~ellq~~-se 353 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN----STLQVQK-EQ---LDGQMELLQIF-SE 353 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHH-HH---hhhhhhHhhhh-hc
Confidence 555666666666 567777888888888887666654 4555543 11 11123333333 22
Q ss_pred HHHHHHH-HHHHHHHHhH--HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHH---HHHHHHHhhhh
Q 006597 397 KEDLHNR-IIQLEKQLDA--KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL---KDLREKEGELD 461 (639)
Q Consensus 397 ke~~~~k-il~LekqL~~--kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~---~~L~ek~~el~ 461 (639)
-+++-+. ....-.||-. -=+|+||-+++-|.|+..+.- +-++...|+-+|+ ..|.-|++.|+
T Consensus 354 ~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqss---s~Ee~~SK~leleke~KnLs~k~e~Le 421 (1195)
T KOG4643|consen 354 NEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSS---SYEELISKHLELEKEHKNLSKKHEILE 421 (1195)
T ss_pred chhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhHhHhHHHHHHH
Confidence 2222222 2222334544 567888999999999988764 3345555544443 34556666554
No 22
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.38 E-value=8 Score=46.14 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 006597 262 LTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEI 305 (639)
Q Consensus 262 L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi 305 (639)
++..|....+.-++|+.+++..+.+.+.-+.-...|...+.+|.
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666777766666665554444444444444443
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.38 E-value=19 Score=45.15 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=22.9
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHhhhcCCCCcccccc
Q 006597 570 LKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSEL 606 (639)
Q Consensus 570 L~~Lk~e~Geev~~aV~~Al~E~neyN~sgry~v~eL 606 (639)
++.|-.==|-|=-=+...=|.=|..|+||-=|++-|.
T Consensus 1061 ~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEV 1097 (1163)
T COG1196 1061 LQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEV 1097 (1163)
T ss_pred ccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccc
Confidence 3444433344433333445678899999988887775
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.25 E-value=19 Score=44.64 Aligned_cols=107 Identities=26% Similarity=0.353 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHhhcchHHHHHHHHHHHHHhh-----------------------
Q 006597 440 IEVLQKMETVLKDLREKEGELDDLEALNQT--LIIRERKSNDELQDARKELINALKE----------------------- 494 (639)
Q Consensus 440 ~~~~~ki~~l~~~L~ek~~el~~~e~lnq~--Li~ker~sndELq~ARk~lI~~l~~----------------------- 494 (639)
+++++.|+.|+.+.+.-++.+.+++.+... +-.++.+--+++..+=+++|+.+..
T Consensus 867 ~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~l~~~l~~R~~~~qk~r~~~~~~~~~~ 946 (1074)
T KOG0250|consen 867 AEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKALGEALESREQKYQKFRKLLTRRATEE 946 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999888 4456666667777665555554321
Q ss_pred ---------c---------cCcccccceecCCCCChHHHHHHHhhcCh-hhHHHHHHHHHHHHHhhhcCCCCcccEEE
Q 006597 495 ---------L---------SGRAHIGLKRMGELDNKPFLEVMNRKYNE-EEAEERASELCSLWEEYLKDPDWHPFKVI 553 (639)
Q Consensus 495 ---------~---------~~~~~IgiKrmGeld~kpF~~ac~~k~~~-~~~~~~a~~l~s~Wq~~l~dp~WhPFk~v 553 (639)
+ ...-.|+||+-+.=+.+|+.+. +-++. |--=++++.|-|+|. +.=+||+..
T Consensus 947 F~~~l~~R~~sg~l~~~~e~ktl~i~v~~~~~~~~~~v~d~--~gLSGGERSFsTv~lllsLW~-----~me~Pfr~L 1017 (1074)
T KOG0250|consen 947 FDALLGKRGFSGKLEFDHEEKTLSISVKLPTSGNEKAVRDT--RGLSGGERSFSTVCLLLSLWE-----VMECPFRAL 1017 (1074)
T ss_pred HHHHhhccccCcceeecccccccchhhccCCCCcccccccc--cccCcccchHHHHHHHHHHhH-----hhcCchhhh
Confidence 0 1233477766666555444332 22222 333355667889997 677888753
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.07 E-value=21 Score=44.37 Aligned_cols=86 Identities=24% Similarity=0.263 Sum_probs=47.4
Q ss_pred hhhcccCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh---chHHHHHHHHH-----------HHH
Q 006597 234 HLRKIGDLKTISEMME---EEARKQNLLVSNLTNMIEVKDKHLEEMKERFTE---TSNSVEKLMEE-----------KDR 296 (639)
Q Consensus 234 ~LrK~gdLKTi~ei~~---E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e---~s~sL~r~meE-----------kd~ 296 (639)
+.-|-+-|.-+.+.-. +....+..+|+.+...|..-.+++++++.+... +.....+.+.= +++
T Consensus 202 lfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ 281 (1074)
T KOG0250|consen 202 LFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVER 281 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443333332 233567778888888888888888888777652 33333333322 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006597 297 LLQSYNEEIKKIQLSARDHFQRI 319 (639)
Q Consensus 297 l~~~yneEi~kmQ~~a~~~~~~i 319 (639)
....-.++|.+.|...-...++|
T Consensus 282 ql~~~~~~i~~~qek~~~l~~ki 304 (1074)
T KOG0250|consen 282 QLNNQEEEIKKKQEKVDTLQEKI 304 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666554444444
No 26
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.03 E-value=22 Score=44.60 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=104.3
Q ss_pred HHHhhhchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 006597 277 KERFTETSNSVEKLMEEK---DRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNEN 353 (639)
Q Consensus 277 E~k~~e~s~sL~r~meEk---d~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~ 353 (639)
...+++....+...-+++ ..+...+.+|+... +.-.++.+...+.-.+++.+|+.....+-.......++......
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 345555555555555444 34457788888888 55567777778888888888887766666555555555555554
Q ss_pred HHHHHHHHHHHHh---hhhchHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 006597 354 DRKILAEEIEKNA---MRNNSLQLASLVQQKADENVRKLAEDQ-------KKQKEDLHNRIIQLEKQLDAKQALALEIER 423 (639)
Q Consensus 354 er~kl~~e~~kn~---~~~~~l~lA~~eQ~kade~vlkL~e~h-------krEke~~~~kil~LekqL~~kQ~LELEi~q 423 (639)
--+.++.+.+.+. .++..|+.+...--+....+.-.++.. ..+..++-+.|.-|+.-+.+++..++-+++
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 4455555555322 223333333332222233333333333 446667778888888888888877777777
Q ss_pred hhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006597 424 LKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (639)
Q Consensus 424 LkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~L 470 (639)
|+-... .+..+-+-+. .=..+.-+|+....+++.+.+-|+.|
T Consensus 652 l~r~~~--e~~~~~ek~~---~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 652 LKRENQ--ERISDSEKEA---LEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHH--HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332 2211111101 11233444555555555555555555
No 27
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.70 E-value=18 Score=43.80 Aligned_cols=90 Identities=24% Similarity=0.358 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHH
Q 006597 252 ARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ---LSARDHFQRIFTDHEKLKL 328 (639)
Q Consensus 252 ~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ---~~a~~~~~~i~~e~ekl~~ 328 (639)
.+...++-..|-.+|...++.|..+ ..-+..|.+++.++++++..-.++-...- ....--.+-+-.+|--|+.
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~----~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAES----AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333 22233344445555555554444322111 1222345556678888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006597 329 QLESQKKELELRGEELE 345 (639)
Q Consensus 329 eLe~k~~eL~~r~~~L~ 345 (639)
+|-..-+||+.|..+.+
T Consensus 156 e~~~~~keleir~~E~~ 172 (769)
T PF05911_consen 156 ELHVLSKELEIRNEERE 172 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877664
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.62 E-value=4.9 Score=43.22 Aligned_cols=108 Identities=22% Similarity=0.309 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHH
Q 006597 295 DRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL 374 (639)
Q Consensus 295 d~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 374 (639)
...+.+-..|+..+++...+-..-=-.+-+.++.+|.+...+|+.+.++|..++.+- ..+..+
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el----~~l~~~------------- 245 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEEL----EELEEK------------- 245 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-------------
Confidence 334444445555555555442221123445555666666665555555554443321 111111
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhhhhhhhhhcc
Q 006597 375 ASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA-KQALALEIERLKGSLNVMKHM 434 (639)
Q Consensus 375 A~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~-kQ~LELEi~qLkG~L~VmKhm 434 (639)
+++-..++.++...|.++++.++. +..=.-||.+|+.++..+.++
T Consensus 246 ---------------i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 246 ---------------IEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 222234455566666666666652 333455566666665555443
No 29
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.61 E-value=6.7 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhchHHHHHHHH
Q 006597 339 LRGEELEKRETQNENDRKILAE 360 (639)
Q Consensus 339 ~r~~~L~k~~~~~~~er~kl~~ 360 (639)
+.|-++++.=.+.+.+-..|+.
T Consensus 446 sqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 446 SQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3455555544444444444443
No 30
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.76 E-value=43 Score=44.03 Aligned_cols=219 Identities=18% Similarity=0.243 Sum_probs=107.1
Q ss_pred chhhhhcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 231 IGDHLRKIGD-LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 231 iG~~LrK~gd-LKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
|=.|||+--+ +-|--++..-+...-.+.|+.+-..|..-+..|...+.++..+..+++.- ..+-+.+.
T Consensus 1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~--------~~i~~~v~--- 1222 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEH--------KEILEKVE--- 1222 (1822)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--------hHHHHHHH---
Confidence 5567776532 22344455555566677777777777777777777777776555554431 11111111
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchH---HHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHH
Q 006597 310 LSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNEN---DRKILAEEIEKNAMRNNSLQLASLVQQKADENV 386 (639)
Q Consensus 310 ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~---er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~v 386 (639)
-..-|.+.|.-||.++++....+.-=-.+++++...-.. +-.-|..++.........|+.=. .+.|+. .
T Consensus 1223 -----~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~-~~wK~R--~ 1294 (1822)
T KOG4674|consen 1223 -----EVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEN-DRWKQR--N 1294 (1822)
T ss_pred -----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--H
Confidence 112233333333333333222221111112221111111 11111222222111111111100 111111 1
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 006597 387 RKLAEDQK----KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDD 462 (639)
Q Consensus 387 lkL~e~hk----rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~ 462 (639)
-.|++.|+ -+=+.+...|-.|+.+|..++.+--|+...-+.++ ..++++++++..+.+.+...+..
T Consensus 1295 q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q----------~~~k~qld~l~~e~~~lt~~~~q 1364 (1822)
T KOG4674|consen 1295 QDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ----------EKIKKQLDELNNEKANLTKELEQ 1364 (1822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12444433 24455556778888888877776555555555554 46777888888888888888888
Q ss_pred HHHHHHHHHHHHhhcc
Q 006597 463 LEALNQTLIIRERKSN 478 (639)
Q Consensus 463 ~e~lnq~Li~ker~sn 478 (639)
++++++.|-...+.-|
T Consensus 1365 l~~~~~rL~~~~~e~~ 1380 (1822)
T KOG4674|consen 1365 LEDLKTRLAAALSEKN 1380 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877776554444
No 31
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=33 Score=42.53 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006597 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQK 334 (639)
Q Consensus 255 ~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~ 334 (639)
....+.+++..|+....++..+.+.++.+...+...-++...|.++--.+|-.--..-.+.....-.+.-+...-|..+.
T Consensus 242 ~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~ 321 (1174)
T KOG0933|consen 242 AEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777888888888777777777766666666666666655544555555566666667777777788
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHH
Q 006597 335 KELELRGEELEKRETQNENDRKILA 359 (639)
Q Consensus 335 ~eL~~r~~~L~k~~~~~~~er~kl~ 359 (639)
..|+--.+.++++.-.-..+|++|.
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~ 346 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLK 346 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHH
Confidence 8888888888888877777888875
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.54 E-value=22 Score=40.22 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006597 249 EEEARKQNLLVSNLTNMIEVKDKHLE 274 (639)
Q Consensus 249 ~E~~rk~~~lv~~L~n~I~~knk~l~ 274 (639)
.+..+...+.+..|..++...+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~ 198 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIK 198 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.44 E-value=47 Score=43.70 Aligned_cols=169 Identities=18% Similarity=0.288 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHH
Q 006597 257 LLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLL------QSYNEEIKKIQLS-ARDHFQRIFTDHEKLKLQ 329 (639)
Q Consensus 257 ~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~------~~yneEi~kmQ~~-a~~~~~~i~~e~ekl~~e 329 (639)
.-+..|..+|.+-+..+.-|++...++...+...+.+..+|- ...+.++..-+.. --..+.+.-.+..+|..+
T Consensus 1243 ~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1243 EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 344778888888888888888888888888887777665443 2233333333222 234456666677778888
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 006597 330 LESQKKELELRGEELEKRE-------TQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHN 402 (639)
Q Consensus 330 Le~k~~eL~~r~~~L~k~~-------~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~ 402 (639)
|+++-+.+..=.+.++.+. -....+++.|..+.+.-...+..|.-|--|+.++-..+...-..|.-..+.+..
T Consensus 1323 l~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~r 1402 (1822)
T KOG4674|consen 1323 LEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTSR 1402 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666555555444 223345555555555544445555444444444434444445555555556666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 006597 403 RIIQLEKQLDAKQALALEIERLKGSLN 429 (639)
Q Consensus 403 kil~LekqL~~kQ~LELEi~qLkG~L~ 429 (639)
+...+...+. |.-||+.|+.+|+
T Consensus 1403 k~e~~~~k~~----~~~e~~sl~eeL~ 1425 (1822)
T KOG4674|consen 1403 KLEKLKEKLE----LSEELESLKEELE 1425 (1822)
T ss_pred HHHHHHHHHh----HHHHHHHHHHHHH
Confidence 6665555554 5666666666663
No 34
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.00 E-value=45 Score=42.53 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHH
Q 006597 446 METVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDA 484 (639)
Q Consensus 446 i~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~A 484 (639)
|+.++.++.....++..+..--..+-..+|.-.|.|.-.
T Consensus 986 ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~ 1024 (1311)
T TIGR00606 986 LEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLR 1024 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444555555555554
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=91.80 E-value=36 Score=41.00 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 006597 400 LHNRIIQLEKQL 411 (639)
Q Consensus 400 ~~~kil~LekqL 411 (639)
+...+..|+..+
T Consensus 347 ~~~~~~~le~~~ 358 (880)
T PRK02224 347 LREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 36
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.59 E-value=17 Score=36.84 Aligned_cols=137 Identities=23% Similarity=0.282 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHhhhh
Q 006597 291 MEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRET-QNENDRKILAEEIEKNAMRN 369 (639)
Q Consensus 291 meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~-~~~~er~kl~~e~~kn~~~~ 369 (639)
-.+--++++.|++|++-++...|..-.++-.-..++ .+.+..+..+....+.|.++.. .+=.+|..|...
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl-k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k-------- 126 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL-KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRK-------- 126 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH--------
Confidence 345578899999999999988888765554444333 3455555556666666665544 333445444322
Q ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHH
Q 006597 370 NSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETV 449 (639)
Q Consensus 370 ~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l 449 (639)
++......++.-.+|..|++++ +|.-.-.+-.|.+. .+|+.++
T Consensus 127 --------------------L~~~~~~l~~~~~ki~~Lek~l------eL~~k~~~rql~~e-----------~kK~~~~ 169 (194)
T PF15619_consen 127 --------------------LSQLEQKLQEKEKKIQELEKQL------ELENKSFRRQLASE-----------KKKHKEA 169 (194)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHH-----------HHHHHHH
Confidence 1222334445556777777754 34433344444322 3445555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 006597 450 LKDLREKEGELDDLEALNQTLIIRERK 476 (639)
Q Consensus 450 ~~~L~ek~~el~~~e~lnq~Li~ker~ 476 (639)
..++..-..+. +.|+|.|-.|+|.
T Consensus 170 ~~~~~~l~~ei---~~L~~klkEKer~ 193 (194)
T PF15619_consen 170 QEEVKSLQEEI---QRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhc
Confidence 55554444443 4677777777764
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.54 E-value=54 Score=40.73 Aligned_cols=42 Identities=33% Similarity=0.573 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 006597 444 QKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELI 489 (639)
Q Consensus 444 ~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI 489 (639)
..|.+|...+.+-...|+...+.+-.|- .--||||++||+|-
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k----~~~del~~~Rk~lW 473 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELK----RELDELQDKRKELW 473 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3455555555555555555555444442 23489999999754
No 38
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.45 E-value=47 Score=39.92 Aligned_cols=222 Identities=18% Similarity=0.284 Sum_probs=114.1
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006597 233 DHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM-EEKDRLLQSYNEEIKKIQLS 311 (639)
Q Consensus 233 ~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m-eEkd~l~~~yneEi~kmQ~~ 311 (639)
+|||+. .|+-.--+..++.|-..+|-+-+-.+++..-+.. ..--+++.|.- -|.+.|...-.++|.++.+
T Consensus 789 rflRrQ-eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~rrF-------eqE~~~kkr~~d~EmenlErqQkq~iE~~Eq- 859 (1187)
T KOG0579|consen 789 RFLRRQ-ELRELRRLQKEEARQQQQLQAKGIKQVEQQARRF-------EQEQTNKKRTSDLEMENLERQQKQEIEDTEQ- 859 (1187)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH-
Confidence 677776 7777777888888877777665554444332221 11112222221 1234444444455554443
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhhchHHHH-HHHHHHHHHhhhhc--hHHHHHHHHHhhh
Q 006597 312 ARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKR-----ETQNENDRK-ILAEEIEKNAMRNN--SLQLASLVQQKAD 383 (639)
Q Consensus 312 a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~-----~~~~~~er~-kl~~e~~kn~~~~~--~l~lA~~eQ~kad 383 (639)
.|..+.-++..++|.|-+--|+....+-|+--|. .-.+...|+ .|.+-++....+.. .-..-+..||.++
T Consensus 860 --~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le 937 (1187)
T KOG0579|consen 860 --AHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLE 937 (1187)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444555555556665555555444443332211 111111111 11111111111111 1123445677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHH--HHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhh
Q 006597 384 ENVRKLAEDQKKQKEDLHNRIIQLEKQLD-AKQ--ALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGEL 460 (639)
Q Consensus 384 e~vlkL~e~hkrEke~~~~kil~LekqL~-~kQ--~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el 460 (639)
-.+.+++++||++.-.+...-+---++|- ++. --|||-.||+.+-+..|..--|. -. =--+.-|.--+.+|
T Consensus 938 ~~lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDq--Yf----lqRhqlL~rHekE~ 1011 (1187)
T KOG0579|consen 938 AMLKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQ--YF----LQRHQLLARHEKEM 1011 (1187)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHH
Confidence 88888999999776555444332222221 111 13888888888888777632211 11 11134466677889
Q ss_pred hhHHHHHHHHH
Q 006597 461 DDLEALNQTLI 471 (639)
Q Consensus 461 ~~~e~lnq~Li 471 (639)
+.|+-.||.+|
T Consensus 1012 eQmqrynQr~i 1022 (1187)
T KOG0579|consen 1012 EQMQRYNQREI 1022 (1187)
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 39
>PRK02224 chromosome segregation protein; Provisional
Probab=90.32 E-value=49 Score=39.90 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 006597 400 LHNRIIQLEKQLD 412 (639)
Q Consensus 400 ~~~kil~LekqL~ 412 (639)
+-+++-.|+..|+
T Consensus 319 l~~k~~el~~~l~ 331 (880)
T PRK02224 319 LEDRDEELRDRLE 331 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 40
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=89.54 E-value=5.8 Score=37.53 Aligned_cols=93 Identities=25% Similarity=0.380 Sum_probs=70.2
Q ss_pred HHHHHHHHH----HHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHH---------HHHHHHHHHHHhhhhhHH
Q 006597 398 EDLHNRIIQ----LEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKM---------ETVLKDLREKEGELDDLE 464 (639)
Q Consensus 398 e~~~~kil~----LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki---------~~l~~~L~ek~~el~~~e 464 (639)
+..+++..+ |+..+.+||+||.++...+-.|+-..-++ +|..+++.+ +++..+|+++.+. ++
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~--eD~~vYk~VG~llvk~~k~~~~~eL~er~E~---Le 83 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD--EDAPVYKKVGNLLVKVSKEEAVDELEERKET---LE 83 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccHHHHHhhhHHhhhhHHHHHHHHHHHHHH---HH
Confidence 334444444 44555689999999999998888877775 566788764 5566666666554 46
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhc
Q 006597 465 ALNQTLIIRERKSNDELQDARKELINALKEL 495 (639)
Q Consensus 465 ~lnq~Li~ker~sndELq~ARk~lI~~l~~~ 495 (639)
---.||-..|+....+|++-+.+|++-|..-
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7778999999999999999999999988753
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.22 E-value=76 Score=40.55 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 006597 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (639)
Q Consensus 400 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~Vm 431 (639)
+.+.-++|..++..++.|+-++.+|+..++-.
T Consensus 869 l~~~klkl~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777888888888887766533
No 42
>PRK09039 hypothetical protein; Validated
Probab=89.17 E-value=38 Score=37.03 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHHHhhc-cCcccccce
Q 006597 478 NDELQDARKELINALKEL-SGRAHIGLK 504 (639)
Q Consensus 478 ndELq~ARk~lI~~l~~~-~~~~~IgiK 504 (639)
..||...|.+++..|.++ +++..|.|.
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 368999999999999877 666666665
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.04 E-value=70 Score=39.88 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHH
Q 006597 399 DLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL 450 (639)
Q Consensus 399 ~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~ 450 (639)
.+-.-+...|+-+.+++..+|+++.|.+-+.-|+. +..+..++|+.|.
T Consensus 886 ~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~----e~~~~~k~v~~l~ 933 (1174)
T KOG0933|consen 886 EISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES----EKANARKEVEKLL 933 (1174)
T ss_pred HHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh----hHHHHHHHHHHHH
Confidence 34444556677888999999999999988877665 2334444444443
No 44
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.52 E-value=38 Score=36.15 Aligned_cols=131 Identities=31% Similarity=0.416 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006597 326 LKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRII 405 (639)
Q Consensus 326 l~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil 405 (639)
+-.+|+++...|+.|.+.|. +++.|-+-+.+.-|....-.+.+-+..+-+-.|++ . .-+-.||.+++.|-
T Consensus 46 ~EaelesqL~q~etrnrdl~-----t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl----s-qt~aikeql~kyiR 115 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLE-----TRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL----S-QTHAIKEQLRKYIR 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHH
Confidence 45677777777777777663 45555666666555555566666666554443432 1 12345777888888
Q ss_pred HHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHH
Q 006597 406 QLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDEL 481 (639)
Q Consensus 406 ~LekqL~~----kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndEL 481 (639)
+||+--|. |.+-+.-.+-+..+|+ ....++.=|.-+|.||+--++.+. -| .||-
T Consensus 116 eLEQaNDdLErakRati~sleDfeqrLn-----------qAIErnAfLESELdEke~llesvq----RL-------kdEa 173 (333)
T KOG1853|consen 116 ELEQANDDLERAKRATIYSLEDFEQRLN-----------QAIERNAFLESELDEKEVLLESVQ----RL-------KDEA 173 (333)
T ss_pred HHHHhccHHHHhhhhhhhhHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHH----HH-------HHHH
Confidence 88775442 2222222222222222 123456667777777776554332 22 3677
Q ss_pred HHHHHHH
Q 006597 482 QDARKEL 488 (639)
Q Consensus 482 q~ARk~l 488 (639)
.+.|++|
T Consensus 174 rdlrqel 180 (333)
T KOG1853|consen 174 RDLRQEL 180 (333)
T ss_pred HHHHHHH
Confidence 7777776
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.25 E-value=55 Score=37.74 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006597 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (639)
Q Consensus 254 k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (639)
...+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+.....--..+ .-...|...|..-
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a 247 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445666777777777777766666666655555555666677777777766654433333333322 3444555555555
Q ss_pred HHHHHHHHHHHHHHhh
Q 006597 334 KKELELRGEELEKRET 349 (639)
Q Consensus 334 ~~eL~~r~~~L~k~~~ 349 (639)
..++..-..+|.....
T Consensus 248 ~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 248 SAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 46
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.11 E-value=53 Score=37.36 Aligned_cols=174 Identities=17% Similarity=0.266 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006597 243 TISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYN--EEIKKIQLSARDHFQRIF 320 (639)
Q Consensus 243 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yn--eEi~kmQ~~a~~~~~~i~ 320 (639)
+..|+-.+....-. ..+..++..-.+.+++|+---+.+-.--.+++.|+-+|...|+ ||+++=|..-.. +.|.
T Consensus 204 ~tedl~~e~mee~r---~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElrae--E~l~ 278 (502)
T KOG0982|consen 204 ETEDLLVEGMEEER---IDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAE--ESLS 278 (502)
T ss_pred chhhhhhhhhhchh---hhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHH
Confidence 44555555443222 3355666677777888887777777777788888888887776 555544432211 1111
Q ss_pred hhhHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHH
Q 006597 321 TDHEKLKLQ---------------LESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADEN 385 (639)
Q Consensus 321 ~e~ekl~~e---------------Le~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~ 385 (639)
+ -++...| |+.+.+-|+.-.-+|..+.|...+--.+|..+.++-...-..|.+-..+.|+-...
T Consensus 279 E-e~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~r 357 (502)
T KOG0982|consen 279 E-EERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVR 357 (502)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111122 23344455555556666677777777788888877766667777766777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006597 386 VRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIE 422 (639)
Q Consensus 386 vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~ 422 (639)
+.--.-.+.++|++...=|..|-++|.--|.+-+..+
T Consensus 358 m~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 358 MNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777999999999999999888876665544443
No 47
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=88.03 E-value=59 Score=39.71 Aligned_cols=160 Identities=24% Similarity=0.293 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHH---------HHHHHHH
Q 006597 262 LTNMIEVKDKHLEEMKERFTETSNSVEKL-------MEEKDRLLQSYNEEIKK-------IQLS---------ARDHFQR 318 (639)
Q Consensus 262 L~n~I~~knk~l~elE~k~~e~s~sL~r~-------meEkd~l~~~yneEi~k-------mQ~~---------a~~~~~~ 318 (639)
-..+|+.|.+.+.+||.+....+--...+ .|.+.+||-...+|+.+ +.+. .-+|.+.
T Consensus 920 sicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~ke 999 (1424)
T KOG4572|consen 920 SICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKE 999 (1424)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34667788888888887776554443333 24455565554444332 2222 2456666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhc------hHHHHHHHHHhhhHHHHHHHHH
Q 006597 319 IFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNN------SLQLASLVQQKADENVRKLAED 392 (639)
Q Consensus 319 i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~------~l~lA~~eQ~kade~vlkL~e~ 392 (639)
.--++--++++||+++++|+.--.+++++++.--+++.+--.+-+=++.+-+ ...+|.++- .-|+----+.++
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~ea-emdeik~~~~ed 1078 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEA-EMDEIKDGKCED 1078 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHh-hhhhhhhhhhhh
Confidence 6667778899999999999999999999888866665543223332332211 123344431 122222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 006597 393 QKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSL 428 (639)
Q Consensus 393 hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L 428 (639)
|-|.....+|+. -..-|.|--||++|+.++
T Consensus 1079 --rakqkei~k~L~----ehelenLrnEieklndkI 1108 (1424)
T KOG4572|consen 1079 --RAKQKEIDKILK----EHELENLRNEIEKLNDKI 1108 (1424)
T ss_pred --HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 333334455553 223456667777776443
No 48
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=87.87 E-value=35 Score=35.07 Aligned_cols=129 Identities=18% Similarity=0.387 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 242 KTISEMMEEEARKQNLLVSNLTNMIEVKD---KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQR 318 (639)
Q Consensus 242 KTi~ei~~E~~rk~~~lv~~L~n~I~~kn---k~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~ 318 (639)
+||+.|+.+..+.....-..+...+..++ .+|.-||..|+.......+ -......|...-..+...+.++..+
T Consensus 51 k~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~K~vi~~~k~NEE~Lkk~~~ey~~~ 126 (207)
T PF05010_consen 51 KTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----QKEVIEGYKKNEETLKKCIEEYEER 126 (207)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36777776665543333333333333333 3444455555433332222 2334444544444455666666666
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHH
Q 006597 319 IFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL 374 (639)
Q Consensus 319 i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 374 (639)
|-.+.++...=-..-...|+.=..+++........+-..|.....+..++..||.-
T Consensus 127 l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 127 LKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655554455556777777888888888888888888777777666666654
No 49
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=87.80 E-value=30 Score=41.25 Aligned_cols=201 Identities=21% Similarity=0.228 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006597 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSY----NEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (639)
Q Consensus 258 lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~y----neEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (639)
....+.-.+...+..+...+..+.-...++..+-.+...+.... .+...+++..+.....+...+...+..+|+..
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~v 194 (670)
T KOG0239|consen 115 NLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTELEHV 194 (670)
T ss_pred chhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444444555555555555556555555543322111 22222355577777777777887788888777
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006597 334 KKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA 413 (639)
Q Consensus 334 ~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~ 413 (639)
+...+.-..+|.. ...+++.|+.... ....+..++..|+.....
T Consensus 195 ~~~~~~~~~~l~~----~~~~~~~l~~~~~--------------------------------~~~~~~~~~~~l~~~~~~ 238 (670)
T KOG0239|consen 195 TNSISELESVLKS----AQEERRVLADSLG--------------------------------NYADLRRNIKPLEGLEST 238 (670)
T ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHhh--------------------------------hhhhHHHhhhhhhhhhhH
Confidence 7777776666655 2233344432211 111112222222222222
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q 006597 414 KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALK 493 (639)
Q Consensus 414 kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~ 493 (639)
..+- |..|+..|+.++.-..+-...+.....+.++-+..-..-...+.+++..|+.++ .-+.+|++|=+-+.
T Consensus 239 ~~~~---i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-----~e~~~r~kL~N~i~ 310 (670)
T KOG0239|consen 239 IKKK---IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-----KEKEERRKLHNEIL 310 (670)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 1111 444444444444432222234444555555555555555677778888887554 23467777777776
Q ss_pred hccCcccccce
Q 006597 494 ELSGRAHIGLK 504 (639)
Q Consensus 494 ~~~~~~~IgiK 504 (639)
++ ..||.|.
T Consensus 311 eL--kGnIRV~ 319 (670)
T KOG0239|consen 311 EL--KGNIRVF 319 (670)
T ss_pred Hh--hcCceEE
Confidence 65 2256664
No 50
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=87.54 E-value=0.33 Score=38.90 Aligned_cols=24 Identities=38% Similarity=0.913 Sum_probs=18.4
Q ss_pred CeeeccCCCCCCccccccHHHHhhhhcC
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHASGV 66 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA~gv 66 (639)
.+|.||||.. .++...|+.|-...
T Consensus 1 ~~f~CP~C~~----~~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 1 DSFTCPYCGK----GFSESSLVEHCEDE 24 (54)
T ss_pred CCcCCCCCCC----ccCHHHHHHHHHhH
Confidence 3799999973 37788999996543
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.31 E-value=95 Score=39.43 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=25.5
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKD 270 (639)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~kn 270 (639)
+..-..+. +|.+-++-++...-+-+..|+.|.|.-..-+
T Consensus 1497 vA~~vL~l-~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1497 VAEEVLAL-ELPLTPEQIQQLTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHhc-cCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44455555 7888777777777777777777776544443
No 52
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.60 E-value=61 Score=37.08 Aligned_cols=87 Identities=25% Similarity=0.396 Sum_probs=69.0
Q ss_pred HHHHHHHHHH-hHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchH
Q 006597 402 NRIIQLEKQL-DAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDE 480 (639)
Q Consensus 402 ~kil~LekqL-~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndE 480 (639)
.+++.|-+|- |-+|.|.-+..+|+..|.+.. -++++ ..+|.+|+.+|+-.-++.+..+.++-+|...--+-.+.
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e----~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~d 381 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKLQLREELKNLE----TEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDD 381 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc----chHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCch
Confidence 3566666665 457788888888887776543 35666 78999999999999999999999999999777677777
Q ss_pred HHHHHHHHHHHHhhc
Q 006597 481 LQDARKELINALKEL 495 (639)
Q Consensus 481 Lq~ARk~lI~~l~~~ 495 (639)
.| |+..+.++.++
T Consensus 382 v~--rk~ytqrikEi 394 (521)
T KOG1937|consen 382 VQ--RKVYTQRIKEI 394 (521)
T ss_pred hH--HHHHHHHHHHH
Confidence 77 99999888776
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.53 E-value=93 Score=38.53 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=50.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHH-HH--hhcchHHHHHHHHHHHHHhhccCcccccceecCCCCChHHHHHHHhhcChh-hH
Q 006597 452 DLREKEGELDDLEALNQTLII-RE--RKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEE-EA 527 (639)
Q Consensus 452 ~L~ek~~el~~~e~lnq~Li~-ke--r~sndELq~ARk~lI~~l~~~~~~~~IgiKrmGeld~kpF~~ac~~k~~~~-~~ 527 (639)
=.....+.++..=+..||++. +| +.-||.||+-+.+-...-. -...++||+ --..|-+--..+- +-|... |.
T Consensus 509 l~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee--es~q~~s~~-~et~dyk~~fa~s-kayaraie~ 584 (1243)
T KOG0971|consen 509 LQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE--ESQQPPSVD-PETFDYKIKFAES-KAYARAIEM 584 (1243)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH--HhcCCCCCc-hhhhHHHHHHHHh-HHHHHHHHH
Confidence 334555666666677777653 23 3456777766664433322 234568877 2233322212221 223222 44
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccEEEEeCCcccc
Q 006597 528 EERASELCSLWEEYLKDPDWHPFKVITAEGKHKE 561 (639)
Q Consensus 528 ~~~a~~l~s~Wq~~l~dp~WhPFk~v~v~g~~ke 561 (639)
++++.++---=++-=-=-.+-|=-..-+||.+--
T Consensus 585 QlrqiEv~~a~rh~~~l~AFmPdsFlrrGGdhDs 618 (1243)
T KOG0971|consen 585 QLRQIEVAQANRHMSLLTAFMPDSFLRRGGDHDS 618 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHhhccCCCCcce
Confidence 5555555433222111123444444567887653
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.39 E-value=1.1e+02 Score=39.05 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=49.2
Q ss_pred cchhhhhccc-CCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHH
Q 006597 230 IIGDHLRKIG-DLKTISEMMEEEAR----KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKL 290 (639)
Q Consensus 230 ~iG~~LrK~g-dLKTi~ei~~E~~r----k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~ 290 (639)
.|++||-..+ |.-||.++.++-.. -+-.+|.+|+++|..--..|..++..++.|---++|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4888887765 77788887766554 4678899999999999999999999999887666654
No 55
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.38 E-value=70 Score=36.93 Aligned_cols=60 Identities=33% Similarity=0.326 Sum_probs=35.9
Q ss_pred cccccccHHHHHHHHHhcHHHHHHHHHHHHHHh---hhcCCCCcccccccccccCcccchH-HHHHHHHH
Q 006597 561 EIINEEDEKLKGLKKEMGEEVYIAVTTALVEIN---EYNPSGRYITSELWNYKEGRKATLQ-EGVAFLMK 626 (639)
Q Consensus 561 eii~edD~kL~~Lk~e~Geev~~aV~~Al~E~n---eyN~sgry~v~eLWN~ke~rkAtl~-E~v~~~~~ 626 (639)
-.|..=..+|+....+... +-.+...||-+|+ ++..+.+..... .++..||. +-..|+..
T Consensus 407 a~i~t~E~rL~aa~ke~ea-aKasEa~Ala~ik~l~e~~~~~~~~~~~-----~~~~Vtls~eEy~~L~~ 470 (522)
T PF05701_consen 407 AAIKTAEERLEAALKEAEA-AKASEALALAEIKALSESESSSRASDSE-----SSSKVTLSLEEYESLSK 470 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccccccccC-----CCCCeeecHHHHHHHHH
Confidence 4566667778877777765 6677788888888 444333332222 55666643 44455443
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.01 E-value=92 Score=37.98 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhhhhhh
Q 006597 416 ALALEIERLKGSLNVM 431 (639)
Q Consensus 416 ~LELEi~qLkG~L~Vm 431 (639)
.|.--++||.|+|+=.
T Consensus 448 tLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQDV 463 (1118)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4566677777776633
No 57
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=85.72 E-value=45 Score=34.15 Aligned_cols=134 Identities=22% Similarity=0.377 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006597 250 EEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQ 329 (639)
Q Consensus 250 E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~e 329 (639)
+..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++...--+ -+.+.-...|+.
T Consensus 12 d~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKklydnY-YkL~~KY~~LK~- 79 (196)
T PF15272_consen 12 DQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLYDNY-YKLYSKYQELKK- 79 (196)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-
Confidence 344577889999999999999999999988877766655 46677777666655433 345555555555
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006597 330 LESQKKELELRGEELEK----RETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRII 405 (639)
Q Consensus 330 Le~k~~eL~~r~~~L~k----~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil 405 (639)
+-.+...|..++..|++ +.+..+...+.+.+++- .+++. ...|..++++++-+...+|.
T Consensus 80 ~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~-------~~~~r----------~~el~~~r~~e~~~YesRI~ 142 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELL-------SLELR----------NKELQNERERERIAYESRIA 142 (196)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHH----------HHHHHhHHHHHHHHHHHHHH
Confidence 33333344444444432 23333333333332221 11222 22466677788888888888
Q ss_pred HHHHHHh
Q 006597 406 QLEKQLD 412 (639)
Q Consensus 406 ~LekqL~ 412 (639)
+||.||.
T Consensus 143 dLE~~L~ 149 (196)
T PF15272_consen 143 DLERQLN 149 (196)
T ss_pred HHHHHHH
Confidence 8888876
No 58
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=84.92 E-value=1.3e+02 Score=38.66 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 006597 354 DRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431 (639)
Q Consensus 354 er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~Vm 431 (639)
+++++..+..+-....+.++++..+|++.-.+...|-...+ ....+++.+|...|.||-+|..|...+.-.
T Consensus 827 Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k-------~~~~~~~~~l~~~~qle~~~~~l~e~~~~~ 897 (1294)
T KOG0962|consen 827 EKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELK-------EEKQKIERSLARLQQLEEDIEELSEEITRL 897 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444555566777777777777666655554443 455566677777777777777776655543
No 59
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.69 E-value=75 Score=38.34 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=63.5
Q ss_pred eeccCCCCCC-Ccch-hhhhcccCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH
Q 006597 219 VARSDDYNLK-NIIG-DHLRKIGDLKTISEMMEEE---ARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE 293 (639)
Q Consensus 219 vAradDy~~~-~~iG-~~LrK~gdLKTi~ei~~E~---~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meE 293 (639)
+|+..|.+-. ..+| .|+-..++=.|+.+++.+- ....+..|--+-++...-+..|...|.++..+ +. .....+
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs-~r-ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQS-LR-AETLPE 139 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhH-Hh-hhhhhh
Confidence 4566666532 2222 3555555666666655322 22223333333344445555555555555333 22 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006597 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELEL 339 (639)
Q Consensus 294 kd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (639)
-+.-++.-+.+.. +|++|...|.+-.+||..+++..-.||..
T Consensus 140 veael~qr~~al~----~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 140 VEAELAQRNAALT----KAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544 57888888999999999988888877764
No 60
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.66 E-value=64 Score=34.98 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 006597 399 DLHNRIIQLEKQLDAKQA 416 (639)
Q Consensus 399 ~~~~kil~LekqL~~kQ~ 416 (639)
.+..+|-+|+++|...++
T Consensus 135 ~lvq~I~~L~k~le~~~k 152 (294)
T COG1340 135 ELVQKIKELRKELEDAKK 152 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355666666666666554
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=84.34 E-value=1.9 Score=33.99 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=41.2
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-cccccc-CCCCCceeEEEeeCCChhchHhHHH
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLW-NFRGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~-~~~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.|-|+|. ..+..+|++.|+. |.+. .+.... ...-+.|+++|.|.+ +..-..|+.
T Consensus 1 l~v~nlp~---------~~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP---------DVTEEELRDFFSQ--FGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT---------TSSHHHHHHHHHT--TSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC---------cCCHHHHHHHHHH--hhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35778886 6688999999999 8876 444444 345688999999987 666666665
No 62
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.89 E-value=24 Score=35.78 Aligned_cols=87 Identities=22% Similarity=0.331 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006597 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (639)
Q Consensus 254 k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (639)
++...+.++...+....+.+..|+..+......+.++-.|++.|...|+.=|...||.+--- |-=|..-|.+.
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~k-------n~lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLK-------NLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 56667888899999999999999999999999999999999999999998777777766443 33444555555
Q ss_pred HHHHHHHHHHHHHH
Q 006597 334 KKELELRGEELEKR 347 (639)
Q Consensus 334 ~~eL~~r~~~L~k~ 347 (639)
...|+.+..||...
T Consensus 156 ~~~lE~keaqL~ev 169 (201)
T PF13851_consen 156 SEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666666543
No 63
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=83.85 E-value=93 Score=36.20 Aligned_cols=104 Identities=23% Similarity=0.380 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHhhhhhh-hhhccCC--CCchHHHHHHHHHHHHHHH
Q 006597 386 VRKLAEDQKKQKEDLHNRIIQLEKQ-------LDAKQALALEIERLKGSLN-VMKHMGD--DGDIEVLQKMETVLKDLRE 455 (639)
Q Consensus 386 vlkL~e~hkrEke~~~~kil~Lekq-------L~~kQ~LELEi~qLkG~L~-VmKhm~~--~~d~~~~~ki~~l~~~L~e 455 (639)
+..-+...+.+...+...|..|.+. +..-+.++-+++.|...+. +...+.. ..-+++...++++.++|.+
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3333444455556666666666544 5667788888888888877 4444443 2357778889999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 006597 456 KEGELDDLEALNQTLIIRERKSNDELQDARKELI 489 (639)
Q Consensus 456 k~~el~~~e~lnq~Li~ker~sndELq~ARk~lI 489 (639)
-..+...+...-+.|-..|..+.+.|+..++.|-
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888898888888888888887653
No 64
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.55 E-value=1.4e+02 Score=38.06 Aligned_cols=52 Identities=29% Similarity=0.211 Sum_probs=28.3
Q ss_pred cccccccHHHHHHHHHhcHHHHHHHHHHHHHH---hhh---cCCCCcccccccccccCcc
Q 006597 561 EIINEEDEKLKGLKKEMGEEVYIAVTTALVEI---NEY---NPSGRYITSELWNYKEGRK 614 (639)
Q Consensus 561 eii~edD~kL~~Lk~e~Geev~~aV~~Al~E~---ney---N~sgry~v~eLWN~ke~rk 614 (639)
+|+..|+++.+.+..+ -.|-.|+++-|-|| ..| +++|+++.--.=|=+|.||
T Consensus 965 ~i~~~d~efs~~~~~e--~~v~~aa~~kl~eif~r~~~~i~~~~~~~t~~l~kkE~EkrK 1022 (1317)
T KOG0612|consen 965 EIVLRDAEFSKKLVTE--RDVKHAAVNKLAEIFNRKTSLIPGKKSTNTLDLRKKEKEKRK 1022 (1317)
T ss_pred hHhhccHHHHhhhhhH--HHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHH
Confidence 5666667776665543 34555555555544 222 3445455555556666676
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.07 E-value=89 Score=35.42 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 429 (639)
.+.+.+...|.+++......+.+.-.+..++..+.
T Consensus 313 ~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~ 347 (562)
T PHA02562 313 HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIS 347 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444444444433
No 66
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.68 E-value=1.2e+02 Score=36.55 Aligned_cols=135 Identities=26% Similarity=0.298 Sum_probs=80.1
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006597 278 ERFTETSNSVEKLMEEKDRLLQSYNE---EIKKI----------QLSARDHFQRIFTDHEKLKLQLESQKKELELRGEEL 344 (639)
Q Consensus 278 ~k~~e~s~sL~r~meEkd~l~~~yne---Ei~km----------Q~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L 344 (639)
.++.+.+.+...+--|++.+.+.... |+.++ .......++.....+..||.+|++-+.+|.....++
T Consensus 485 LKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 485 LKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666665566555544432 22222 334456777888888889999999999999888888
Q ss_pred HHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006597 345 EKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLD 412 (639)
Q Consensus 345 ~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~ 412 (639)
.-.--.++.-.|.++-++-+.......|.--.---.|.=+|-.+.+++-..+...+-++|..--+|+.
T Consensus 565 ~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~ 632 (786)
T PF05483_consen 565 KCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSN 632 (786)
T ss_pred HHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666666655444433332222222234445556666655566666555555555544
No 67
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.48 E-value=1.7e+02 Score=38.29 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=18.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhHHH
Q 006597 438 GDIEVLQKMETVLKDLREKEGELDDLEA 465 (639)
Q Consensus 438 ~d~~~~~ki~~l~~~L~ek~~el~~~e~ 465 (639)
.++++...++.....+.++..++.+++.
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777766666655443
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.03 E-value=1.4e+02 Score=37.04 Aligned_cols=101 Identities=26% Similarity=0.393 Sum_probs=62.1
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006597 343 ELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIE 422 (639)
Q Consensus 343 ~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~ 422 (639)
.|..+-|+--.|++|+..|.++...+++.| .+-.|.-+|+-+.+...|..|..|.|+-=--|-=++
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL--------------~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~ 451 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEEL--------------RRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE 451 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 344556666667777777776644333322 234455566777777777777777777655566666
Q ss_pred HhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006597 423 RLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLII 472 (639)
Q Consensus 423 qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ 472 (639)
||-.+ .|+ +++--..|+|.+.+|+.|+++|-.|+-
T Consensus 452 qLtdk-----nln----------lEekVklLeetv~dlEalee~~EQL~E 486 (1243)
T KOG0971|consen 452 QLTDK-----NLN----------LEEKVKLLEETVGDLEALEEMNEQLQE 486 (1243)
T ss_pred HHHhh-----ccC----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66432 111 333344566777888888888877763
No 69
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=82.02 E-value=1.1e+02 Score=35.82 Aligned_cols=134 Identities=25% Similarity=0.273 Sum_probs=76.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 006597 282 ETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEE 361 (639)
Q Consensus 282 e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e 361 (639)
....+.+-++++-.-+.+.|..||+..+..++...- -+..+-.+.+|...+++|-..- +.....|..|-......
T Consensus 201 d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRaqy---e~~~~~nR~diE~~Y~~ 275 (546)
T KOG0977|consen 201 DLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRAQY---EAISRQNRKDIESWYKR 275 (546)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHH
Confidence 334555666777788888888898888877765542 3444555677777777665532 22222222222222111
Q ss_pred HHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 006597 362 IEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (639)
Q Consensus 362 ~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 429 (639)
+=.+ -+.+-..+..++..+.|.|+++-.. --.+..++-+||.. -+.|+-.|+.|+-+|.
T Consensus 276 kI~~--i~~~~~~~~~~~~~~rEEl~~~R~~----i~~Lr~klselE~~---n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 276 KIQE--IRTSAERANVEQNYAREELRRIRSR----ISGLRAKLSELESR---NSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHH--HHhhhccccchhHHHHHHHHHHHhc----ccchhhhhcccccc---ChhHHHHHHHHHhhhh
Confidence 1111 1223345667778888887766432 33455566666554 3567888888877765
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.49 E-value=75 Score=33.48 Aligned_cols=73 Identities=29% Similarity=0.378 Sum_probs=38.3
Q ss_pred hhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhh
Q 006597 348 ETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQL-DAKQALALEIERLKG 426 (639)
Q Consensus 348 ~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL-~~kQ~LELEi~qLkG 426 (639)
.+.+..+...|..|+.....+..+|.-.. .+++...++-..+.+.+..+|..+|+.+ +.++.++.++..+..
T Consensus 84 ~v~~~~e~~aL~~E~~~ak~r~~~le~el-------~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 84 AVKDERELRALNIEIQIAKERINSLEDEL-------AELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566555554333222222211 1244444555556666667777777776 346666776666554
Q ss_pred h
Q 006597 427 S 427 (639)
Q Consensus 427 ~ 427 (639)
+
T Consensus 157 ~ 157 (239)
T COG1579 157 E 157 (239)
T ss_pred H
Confidence 3
No 71
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.12 E-value=1.6e+02 Score=36.94 Aligned_cols=95 Identities=12% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCChhchHhHHHHHHHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHH-
Q 006597 179 HKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNL- 257 (639)
Q Consensus 179 ~~dw~Gf~nA~~fek~Fe~~~~GRkdW~~~~~~~~~LYGWvAradDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~- 257 (639)
+.+..-=.+-..|-.+|..| -+.|.-|++. +-|++| ..|.+|+=++..+.--...
T Consensus 120 N~~a~t~s~i~elv~~fNIQ-------------i~NLCqFLpQ-------DkV~EF----a~L~pi~LL~eTekAig~~~ 175 (1072)
T KOG0979|consen 120 NDSATTKSEIEELVAHFNIQ-------------IDNLCQFLPQ-------DKVKEF----ARLSPIELLVETEKAIGAEE 175 (1072)
T ss_pred ccchhhhHHHHHHHHHHhcc-------------cCchhhhccH-------HHHHHH----HcCChHHHHHHHHHhcCchh
Confidence 33333444555566666644 2345555532 357776 5788888888766653333
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHH
Q 006597 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLL 298 (639)
Q Consensus 258 lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~ 298 (639)
|+.++ ..+.......+.||..|+..+..|.++-.+.+++-
T Consensus 176 ll~~h-~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~ 215 (1072)
T KOG0979|consen 176 LLQYH-IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLE 215 (1072)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55554 45777888899999999999999998877665554
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.10 E-value=1.4e+02 Score=36.46 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 006597 442 VLQKMETVLKDLREKEGEL 460 (639)
Q Consensus 442 ~~~ki~~l~~~L~ek~~el 460 (639)
|+.++++|+.+.+.|..++
T Consensus 547 ikdqldelskE~esk~~ei 565 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEI 565 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3345666666665555554
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=79.00 E-value=3.2 Score=33.42 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=41.6
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCC-CcccccccCCCC-CceeEEEeeCCChhchHhHHHHHH
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN-PTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEK 193 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~-p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~fek 193 (639)
+.|-|+|. +.+...|.+.|+. |. +..+....++.| .+|+|.|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~---------~~~~~~l~~~f~~--~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP---------STTEEDLRNFFSR--FGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT---------T--HHHHHHHCTT--SSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 35788886 5677899999998 65 457777777654 3799999996 6667777776654
No 74
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=78.65 E-value=74 Score=38.49 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHHHHHHHhhh
Q 006597 438 GDIEVLQKMETVLKDLREKEGEL 460 (639)
Q Consensus 438 ~d~~~~~ki~~l~~~L~ek~~el 460 (639)
-|++++.||++|+++...++++.
T Consensus 643 p~~~~k~KIe~L~~eIkkkIe~a 665 (762)
T PLN03229 643 PPPNLQEKIESLNEEINKKIERV 665 (762)
T ss_pred CChhhHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999998864
No 75
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.89 E-value=1.1e+02 Score=33.27 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCC
Q 006597 413 AKQALALEIERLKGSLNVMKHMGD 436 (639)
Q Consensus 413 ~kQ~LELEi~qLkG~L~VmKhm~~ 436 (639)
.+++++-+|+.+...++--++...
T Consensus 247 ~k~e~~~~I~~ae~~~~~~r~~t~ 270 (312)
T smart00787 247 KKSELNTEIAEAEKKLEQCRGFTF 270 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCH
Confidence 345566666666665555555443
No 76
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=77.87 E-value=1.7e+02 Score=35.39 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 328 LQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQL 407 (639)
Q Consensus 328 ~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~L 407 (639)
..|-+.-+.+..+...|++.....-....++..+... +..+.-.+++---++.+.++.-+-+.+..+.++-++
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~-------~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i 585 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTT-------LTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQI 585 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777777776666666666655544 445555566677778888888888899999998888
Q ss_pred HHHHhHH-----------HHHHHHHHHhhhhhhhhhccCC
Q 006597 408 EKQLDAK-----------QALALEIERLKGSLNVMKHMGD 436 (639)
Q Consensus 408 ekqL~~k-----------Q~LELEi~qLkG~L~VmKhm~~ 436 (639)
+.++.+. +.||-|+.+|+++|.-++-+..
T Consensus 586 ~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 586 QEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8877642 5678888889999888887655
No 77
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.83 E-value=1.8e+02 Score=35.74 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=34.4
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006597 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKE 278 (639)
Q Consensus 230 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~ 278 (639)
.|-+.+..+++.--...++.+.-.+-+.++..|++.|....-.++.+..
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ 678 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQ 678 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4666677777777777777777777777777888777766655555543
No 78
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=77.72 E-value=49 Score=40.14 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=42.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHH
Q 006597 316 FQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKK 395 (639)
Q Consensus 316 ~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkr 395 (639)
+.+++.+-+..+.+++.+..+++....+++++...-+..+.+|++++.+ ..++|.+.+-.++++-++
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~-------------~~~~~~~~a~~~l~~a~~ 584 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK-------------LLEEAEKEAQQAIKEAKK 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555544455555444333 122444445566777777
Q ss_pred HHHHHHHHHHHH
Q 006597 396 QKEDLHNRIIQL 407 (639)
Q Consensus 396 Eke~~~~kil~L 407 (639)
|-+.+++++-++
T Consensus 585 ~~~~~i~~lk~~ 596 (782)
T PRK00409 585 EADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 79
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.19 E-value=1.7e+02 Score=35.17 Aligned_cols=104 Identities=23% Similarity=0.376 Sum_probs=57.2
Q ss_pred cCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhch----HHHHHHHHHHHHHHHHHHHHHHHH-
Q 006597 239 GDLKTISEMMEE-----EARKQNLLVSNLTNMIEVKDKHLEEMKERFTETS----NSVEKLMEEKDRLLQSYNEEIKKI- 308 (639)
Q Consensus 239 gdLKTi~ei~~E-----~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s----~sL~r~meEkd~l~~~yneEi~km- 308 (639)
.-++|.+=|... +......+++-++..-..-.++|..||++|.-.- ..|++-+ +.+...|..|+.++
T Consensus 464 ATiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEl---e~~~~~f~~e~ekl~ 540 (948)
T KOG0577|consen 464 ATIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDREL---ETLRANFSAELEKLA 540 (948)
T ss_pred HHHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHhhhhHHHHHHH
Confidence 356666544432 2235566778888888889999999999996543 3444433 34444444443332
Q ss_pred ----------HHH---HHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHH
Q 006597 309 ----------QLS---ARDHFQRIFTD--HEKLKLQLESQKKELELRGEELE 345 (639)
Q Consensus 309 ----------Q~~---a~~~~~~i~~e--~ekl~~eLe~k~~eL~~r~~~L~ 345 (639)
-.. ....+++.+.. ...|..=|++++++...+..++-
T Consensus 541 ~khqa~~ekeak~~~a~EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~K 592 (948)
T KOG0577|consen 541 RKHQAIGEKEAKAASAEEKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLK 592 (948)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111 12222222222 22355566777777766665553
No 80
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=76.98 E-value=76 Score=38.60 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=6.3
Q ss_pred cceeeeeccC
Q 006597 214 GLYAWVARSD 223 (639)
Q Consensus 214 ~LYGWvArad 223 (639)
..-||++|.-
T Consensus 822 ~~Rg~L~rkr 831 (1259)
T KOG0163|consen 822 IARGYLARKR 831 (1259)
T ss_pred HHHHHHHHhh
Confidence 4557777754
No 81
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=76.66 E-value=1.5e+02 Score=35.73 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHHhhhhhhhhhccC
Q 006597 409 KQLDAKQALALEIERLKGSLNVMKHMG 435 (639)
Q Consensus 409 kqL~~kQ~LELEi~qLkG~L~VmKhm~ 435 (639)
++..+..+|--+|++|+|...|-...-
T Consensus 297 ~e~~~r~kL~N~i~eLkGnIRV~CRvR 323 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKGNIRVFCRVR 323 (670)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEec
Confidence 334556688889999999999987643
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=76.66 E-value=1.7e+02 Score=34.82 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 006597 249 EEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTE 282 (639)
Q Consensus 249 ~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e 282 (639)
++..+.....|..|++....-..++++||.+..+
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666555555666666655544
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.20 E-value=98 Score=31.81 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhcCCCCcc
Q 006597 532 SELCSLWEEYLKDPDWHP 549 (639)
Q Consensus 532 ~~l~s~Wq~~l~dp~WhP 549 (639)
+.|.+.=-.+|.=|==||
T Consensus 205 ahlv~lls~yL~v~Lpy~ 222 (302)
T PF10186_consen 205 AHLVSLLSRYLGVPLPYP 222 (302)
T ss_pred HHHHHHHHHHhCCCCCCC
Confidence 344455556666554333
No 84
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.54 E-value=1.2e+02 Score=35.13 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.2
Q ss_pred HHHHHHHHHHh
Q 006597 483 DARKELINALK 493 (639)
Q Consensus 483 ~ARk~lI~~l~ 493 (639)
.||.-|+..+.
T Consensus 183 ~a~~i~~~aiq 193 (514)
T TIGR03319 183 KAKEILATAIQ 193 (514)
T ss_pred HHHHHHHHHHH
Confidence 45555666554
No 85
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=75.20 E-value=2.4e+02 Score=35.73 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=71.5
Q ss_pred ceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH---
Q 006597 215 LYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM--- 291 (639)
Q Consensus 215 LYGWvAradDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m--- 291 (639)
|=|=+-..--+=+.|+.| ++ .|=+-+..+.. +.++|..-|.+... ....+..++.+.+-..+.|..++
T Consensus 629 ldGtl~~ksGlmsGG~s~---~~-wdek~~~~L~~----~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~ 699 (1141)
T KOG0018|consen 629 LDGTLIHKSGLMSGGSSG---AK-WDEKEVDQLKE----KKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDL 699 (1141)
T ss_pred eeeeEEeccceecCCccC---CC-cCHHHHHHHHH----HHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555566677777 44 45555544443 34445555555444 33366666666665555555444
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006597 292 -------EEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELR 340 (639)
Q Consensus 292 -------eEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r 340 (639)
+++++-++.++.+|..++-... .+.+.++.-+.-..+|+.+|++++.+
T Consensus 700 ~~~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 700 EQLKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777776666 67778888888888888888887765
No 86
>PRK00106 hypothetical protein; Provisional
Probab=74.98 E-value=1.8e+02 Score=34.16 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhh
Q 006597 373 QLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGS 427 (639)
Q Consensus 373 ~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~ 427 (639)
..|.+-+..|.+-+|+-+++.-+.--+.+-+-.+-|-+..+.++ +-.-||+.-+-
T Consensus 161 ~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~~ 219 (535)
T PRK00106 161 RVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGE 219 (535)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 35666667788888888877654433333333333333444444 66667766543
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=74.88 E-value=6.2 Score=30.11 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=34.1
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
++|-|+|. +.+..+|++.|.. |.+. .+....++..++|++.|.|.+.
T Consensus 2 v~i~~l~~---------~~~~~~l~~~~~~--~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP---------DVTEEDLKELFSK--FGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC---------cCCHHHHHHHHHh--cCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56778875 4567889999998 7654 4444444556789999999864
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.00 E-value=2.1e+02 Score=34.58 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=15.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 006597 319 IFTDHEKLKLQLESQKKELELRGEELEKRETQNENDR 355 (639)
Q Consensus 319 i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er 355 (639)
+......++.+|...+.+-|.=...|..+...-..||
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DK 487 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDK 487 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555444444443333333333333333
No 89
>PHA02540 61 DNA primase; Provisional
Probab=73.69 E-value=0.88 Score=49.60 Aligned_cols=122 Identities=14% Similarity=0.255 Sum_probs=64.8
Q ss_pred eeeccCCCCCCcc----ccccHHHHh----hhhcCCCCCCcccchH--HHHhHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 006597 40 AFTCPYCPKKRKQ----EYLYKDLLQ----HASGVGNSTSNKRSAK--EKANHLALAKYLEKDLRDAGSPSKPVNEGDPL 109 (639)
Q Consensus 40 ~~~CP~C~gkkK~----~y~~~~LLq----HA~gvg~~ss~R~a~k--~ka~H~aLak~Le~dl~~~~~~~~~~~~~~~~ 109 (639)
.++||||..+.++ .+++.+=-+ |-.|-|.++. ++. -...|+.+-.||+......+...+.+ ...+
T Consensus 27 ~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g~~~~~~-~~~~- 101 (337)
T PHA02540 27 NFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERGTGKGRP-VPKP- 101 (337)
T ss_pred EecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhCCccccC-CCCC-
Confidence 5899999976543 344444344 7777773332 211 23566777778887666654222211 0011
Q ss_pred CCCC-CCc--eeeecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchH
Q 006597 110 TGCS-HDE--KFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLH 186 (639)
Q Consensus 110 ~~~~-~de--~iVWPwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~ 186 (639)
.+.. ... .=.|+++-.+.+++ .+...+++|..||+.+..+..+ -|..+|.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~l~------------~~~~a~~YL~~RGi~~~~~~~~------------~~~~~~~~l~ 157 (337)
T PHA02540 102 KFEFKKEKKVIEKLPFCERLDTLP------------EDHPIIKYVENRCIPKDKWKLL------------YFTREWQKLV 157 (337)
T ss_pred ChhHHHHHHHHHHHHHHHHHHhCc------------ccHHHHHHHHHcCCCHHHHHhc------------CCCccHHHHH
Confidence 0100 000 11133433333322 3445689999999988865432 2567888877
Q ss_pred hHHH
Q 006597 187 NAMS 190 (639)
Q Consensus 187 nA~~ 190 (639)
+.+.
T Consensus 158 ~~l~ 161 (337)
T PHA02540 158 NSIK 161 (337)
T ss_pred HHHh
Confidence 7654
No 90
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.60 E-value=1.3e+02 Score=32.18 Aligned_cols=40 Identities=30% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 006597 387 RKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKG 426 (639)
Q Consensus 387 lkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG 426 (639)
.-++++-..--..+..++.-||-+||.||-|=-++|+||.
T Consensus 132 i~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 132 IYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455555555666778888999999999999888888874
No 91
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.51 E-value=71 Score=38.75 Aligned_cols=40 Identities=35% Similarity=0.387 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 006597 322 DHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEE 361 (639)
Q Consensus 322 e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e 361 (639)
+.+++=..|+.++++++....+++++....+..++.|+++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.74 E-value=2.8e+02 Score=35.42 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=21.0
Q ss_pred CCccccccccccHHHHHHHHHhcHHHHHHHHHHHHHHhhhcCCC
Q 006597 556 EGKHKEIINEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSG 599 (639)
Q Consensus 556 ~g~~keii~edD~kL~~Lk~e~Geev~~aV~~Al~E~neyN~sg 599 (639)
.|...+.+..-.+.+..+. ..-+.+..+|-..-.-|+.|+.|+
T Consensus 894 ~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~f~~~l~~~~~~~ 936 (1201)
T PF12128_consen 894 EGSVDERLRDLEDLLQRRK-RLREELKKAVERFKGVLTKHSGSE 936 (1201)
T ss_pred hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccc
Confidence 3444455544444444443 333445555555555555555544
No 93
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=72.40 E-value=1.5e+02 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=25.8
Q ss_pred cCCCCCCccccccHHHHhhhhcCCCCCCcccchHHHHhHHHHHHHHHHhcc
Q 006597 44 PYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLR 94 (639)
Q Consensus 44 P~C~gkkK~~y~~~~LLqHA~gvg~~ss~R~a~k~ka~H~aLak~Le~dl~ 94 (639)
-||+.. ++++|-.|-+.+- +.+.+ .+.-.-..||.+|....+
T Consensus 16 ~f~~~~-----~~kpl~r~yFa~~--~~Np~--eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 16 DFCKKR-----KMKPLSRHYFAVP--STNPG--EQFYYFTSLCAWLISKAG 57 (359)
T ss_pred HHhhhc-----CCCCCCHHHhcCC--CCCch--HHHHHHHHHHHHHHHhcC
Confidence 377622 2777777866631 22332 556666788888888665
No 94
>PRK12704 phosphodiesterase; Provisional
Probab=71.45 E-value=2e+02 Score=33.36 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhh
Q 006597 373 QLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGS 427 (639)
Q Consensus 373 ~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~ 427 (639)
..|.|-+..|.+-+++-+++.-+.--+.+=+-++-|.+..+.++ |-.-||+.-+-
T Consensus 146 ~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 146 RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 45677777888888888887654333333333333333344433 66667766543
No 95
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.25 E-value=2.1e+02 Score=33.29 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=31.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHhhhhh
Q 006597 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA----LALEIERLKGSL 428 (639)
Q Consensus 374 lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~----LELEi~qLkG~L 428 (639)
.|.|-+..|.+-+++-+++.-+.--+.+=+-.+-|.+..+.++ |-.-||+.-+-.
T Consensus 141 ~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~~ 199 (514)
T TIGR03319 141 ISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDH 199 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 5666677788888888887654333333232333333333333 666777766443
No 96
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=70.75 E-value=1.6e+02 Score=31.88 Aligned_cols=108 Identities=25% Similarity=0.371 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006597 321 TDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDL 400 (639)
Q Consensus 321 ~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~ 400 (639)
...+.|-.+|+--++|=.-|-=+|+-++|--.-.|+|.+.++.+ .|++. +-.-.++..++.-.+-++.+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e---------~s~Lk--REnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE---------YSALK--RENQSLMESCENLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------hhhhh--hhhhhHHHHHHHHHHHHHHh
Confidence 33344445555555555566667777777766666666655544 33333 33334455555544444444
Q ss_pred HHH-------HHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCc
Q 006597 401 HNR-------IIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGD 439 (639)
Q Consensus 401 ~~k-------il~LekqL~~----kQ~LELEi~qLkG~L~VmKhm~~~~d 439 (639)
... +-=||-||.. -..||-||.+++..|+=.-.-....|
T Consensus 87 shdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 87 SHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 332 2234555542 34677777777777775544333334
No 97
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=70.30 E-value=95 Score=30.18 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 006597 252 ARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLME---EKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 252 ~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~me---Ekd~l~~~yneEi~kmQ 309 (639)
.+..++-|..|.+.+..-.........-...+..+++.... .++....+|.+++++|.
T Consensus 31 ~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 31 ERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH
Confidence 33334444444444443333333333333333334333332 23345555555555555
No 98
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.75 E-value=1.5e+02 Score=31.14 Aligned_cols=62 Identities=19% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 006597 394 KKQKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDD 462 (639)
Q Consensus 394 krEke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~ 462 (639)
+.|--.+...|..|+.+|+. +..||-.|..|...+..... .....|..+..+|.+-..+|..
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~-------~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE-------EYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH-------HHHHhhhccchhHHHHHHHHHH
Confidence 44444555555555555543 34555555555555443222 2233444444444444444433
No 99
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.63 E-value=2.5e+02 Score=32.79 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006597 285 NSVEKLMEEKDRLLQSYNEEI 305 (639)
Q Consensus 285 ~sL~r~meEkd~l~~~yneEi 305 (639)
..++.+.++.|.|......|+
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~ 302 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREV 302 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444443
No 100
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=67.31 E-value=1.5e+02 Score=35.42 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM 291 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m 291 (639)
.-+|+-|+.||+.....+.+||.-..+...+|.-+.
T Consensus 124 ~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatE 159 (861)
T KOG1899|consen 124 QLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATE 159 (861)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHH
Confidence 457899999999999999999988877766666543
No 101
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.05 E-value=1.6e+02 Score=30.36 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHH
Q 006597 257 LLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKL 290 (639)
Q Consensus 257 ~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~ 290 (639)
.-|+.|.+.|.-....|...+..+..++.+|..+
T Consensus 36 ~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~ 69 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAEERLEEATEKLEEA 69 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.28 E-value=4.2e+02 Score=34.95 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHH
Q 006597 441 EVLQKMETVLKDLREKEGELDDLEA 465 (639)
Q Consensus 441 ~~~~ki~~l~~~L~ek~~el~~~e~ 465 (639)
....++.++..+|.+.+.+|..+++
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea 470 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQA 470 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444
No 103
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.10 E-value=3.1e+02 Score=33.32 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=38.5
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006597 272 HLEEMKERFTETSNSVEKLMEEKDRLL---QSYNEEIKKIQLSA---RDHFQRIFTDHEKLKLQLESQKKELELR 340 (639)
Q Consensus 272 ~l~elE~k~~e~s~sL~r~meEkd~l~---~~yneEi~kmQ~~a---~~~~~~i~~e~ekl~~eLe~k~~eL~~r 340 (639)
|+...+--..+....+.....++++++ ....+++..++..| .+-+.+|.+.+++|..-++.-++.+..+
T Consensus 552 Yi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~ 626 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQ 626 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445555555555555544332 33444566665555 5556667777777777666666655443
No 104
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.79 E-value=3.3e+02 Score=33.64 Aligned_cols=172 Identities=24% Similarity=0.277 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH---HHHHHH
Q 006597 291 MEEKDRLLQSYNEEIKKIQLSA---RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL---AEEIEK 364 (639)
Q Consensus 291 meEkd~l~~~yneEi~kmQ~~a---~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl---~~e~~k 364 (639)
.|+.+...+.|...|+.|+--- +....+.-.+|+.|..++.....+.-.-.+|++-+.++-...+.++ -+..+.
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~ 731 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEA 731 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHh
Confidence 3445666666776666665322 2333344455666655555555555555555555555544333332 244556
Q ss_pred HhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------hhhhhhhhcc
Q 006597 365 NAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERL----------KGSLNVMKHM 434 (639)
Q Consensus 365 n~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qL----------kG~L~VmKhm 434 (639)
+..+++.|..|..|-++-- ++...|.++|..|-. -|+++ +|.+.++-.-
T Consensus 732 ~~t~~eel~a~~~e~k~l~------------------~~q~~l~~~L~k~~~---~~es~k~~~~~a~~~~~~~~~~~~~ 790 (970)
T KOG0946|consen 732 SKTQNEELNAALSENKKLE------------------NDQELLTKELNKKNA---DIESFKATQRSAELSQGSLNDNLGD 790 (970)
T ss_pred ccCChHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhhH---HHHHHHHHHhhhhcccchhhhhhhh
Confidence 6667777776665533221 122222233322111 11111 2334333321
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHH
Q 006597 435 GDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDA 484 (639)
Q Consensus 435 ~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~A 484 (639)
.. .-.+.++++.+....|++-..++..++.--|||+.+--..++.+..+
T Consensus 791 qe-qv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 791 QE-QVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HH-HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 11 11233445677777778888888888888888886666666665543
No 105
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=65.55 E-value=3e+02 Score=32.93 Aligned_cols=40 Identities=30% Similarity=0.445 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH-H---------HHHHHhhhhhhhhhccC
Q 006597 396 QKEDLHNRIIQLEKQLDAKQAL-A---------LEIERLKGSLNVMKHMG 435 (639)
Q Consensus 396 Eke~~~~kil~LekqL~~kQ~L-E---------LEi~qLkG~L~VmKhm~ 435 (639)
+.+..-+.|-.||++|.++-.- | -....+|-.|.++|.|+
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ie 360 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIE 360 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhh
Confidence 4444456677777777665321 0 12334455566666665
No 106
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=65.11 E-value=3.3e+02 Score=33.40 Aligned_cols=172 Identities=21% Similarity=0.332 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 240 DLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRI 319 (639)
Q Consensus 240 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i 319 (639)
|++.--++..+..+...+--+.|-.-|+.....|..-+..++..+.++..+-+|+-.+.-... +|+.|....-.-+..+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~-~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE-DLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334444555555555555555555556666666666666666666666666666544433332 2444444444444444
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH---HHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006597 320 FTDHEKLKLQLESQKKELELRGEELEKRETQNEND---RKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQ 396 (639)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~e---r~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrE 396 (639)
-...++|...|-.+-+.|+.-..-|.- ++..-.. +-.|++-......-.+.|.-.. ..++-.-..=.+.++++
T Consensus 398 q~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r---~~~e~e~~Eele~~~~e 473 (775)
T PF10174_consen 398 QKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQR---ERAEKERQEELETYQKE 473 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444555555554443333332222221 1111111 1111110000000011111000 00111112223678888
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 006597 397 KEDLHNRIIQLEKQLDAKQA 416 (639)
Q Consensus 397 ke~~~~kil~LekqL~~kQ~ 416 (639)
-+.+..++-.|++.|..++-
T Consensus 474 ~~~lk~~~~~LQ~eLsEk~~ 493 (775)
T PF10174_consen 474 LKELKAKLESLQKELSEKEL 493 (775)
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 88999999999999998884
No 107
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.77 E-value=1.8e+02 Score=30.05 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=38.9
Q ss_pred HHHHHHHhhhhhhhhhccCC---CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHH
Q 006597 417 LALEIERLKGSLNVMKHMGD---DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARK 486 (639)
Q Consensus 417 LELEi~qLkG~L~VmKhm~~---~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk 486 (639)
||-++..+...|.-+..-.+ +-...+..+|..|...|.+-+...+..+.-.+.|-..--.-.++|...+.
T Consensus 146 LE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333221 01123446688888888888877777777777776544444455554443
No 108
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.60 E-value=1.7e+02 Score=35.64 Aligned_cols=61 Identities=21% Similarity=0.332 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 248 MEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKI 308 (639)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~km 308 (639)
..++....+.++..|..+...-.+...+++....+.....+++.++.+.+.+...+.+.+.
T Consensus 511 ~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666655555555555555544444444444444444444444333333
No 109
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.86 E-value=3.5e+02 Score=33.26 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=15.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhh
Q 006597 404 IIQLEKQLDAKQALALEIERLKGSL 428 (639)
Q Consensus 404 il~LekqL~~kQ~LELEi~qLkG~L 428 (639)
..+++..++.-+.++-++++++.+|
T Consensus 680 ~~~~~~~~~~~~~~~~el~~~~~~l 704 (908)
T COG0419 680 EEQLEEKLEELEQLEEELEQLREEL 704 (908)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3355556666566666777777666
No 110
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=62.67 E-value=2.5e+02 Score=31.75 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006597 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLES 332 (639)
Q Consensus 253 rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~ 332 (639)
-|-..+...|.--|+..-+.-.+|+-..-+....|+-.-|.+++...+-..---+.|--..+..+..++|.-.||.+-++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666677777777777777888888888888888888888887666666688888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHH
Q 006597 333 QKKELELRGEELEKRETQNENDRKIL 358 (639)
Q Consensus 333 k~~eL~~r~~~L~k~~~~~~~er~kl 358 (639)
-.++|+.+.++|+.+..+.+-.-.-|
T Consensus 361 L~keLeekkreleql~~q~~v~~saL 386 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQLAVKTSAL 386 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 99999999999988776654443344
No 111
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.25 E-value=2.5 Score=49.96 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 006597 402 NRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQ 468 (639)
Q Consensus 402 ~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq 468 (639)
....+|++++..-+++..+++.++..|+-+. .+-+..+..+|++|...|..+..+|..+++...
T Consensus 537 ~lk~~le~~~~~l~e~~~e~~~~~~~le~l~---~~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~k 600 (713)
T PF05622_consen 537 ELKQKLEEHLEKLRELKDELQKKREQLEELE---QELNQSLSQKIEELEEALQKKEEEMRAMEERYK 600 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhHHHHHhHHHHHH
Confidence 3334455555555555555555554444322 122333467899999999999999988876443
No 112
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=61.68 E-value=3.4e+02 Score=32.39 Aligned_cols=65 Identities=28% Similarity=0.440 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Q 006597 415 QALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKE 494 (639)
Q Consensus 415 Q~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~~ 494 (639)
+.|-.+|++++..|. .+-...+..|..|..+|..+..+++.|...=+. -....+.+++| +.|+.
T Consensus 295 ~~L~~di~~~~~S~~-------~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~--------~sDYeeIK~EL-siLk~ 358 (629)
T KOG0963|consen 295 AQLSNDIERLEASLV-------EEREKHKAQISALEKELKAKISELEELKEKLNS--------RSDYEEIKKEL-SILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccHHHHHHHH-HHHHH
Confidence 345555555555543 233445667888888888888887766432221 14566777775 45665
Q ss_pred c
Q 006597 495 L 495 (639)
Q Consensus 495 ~ 495 (639)
|
T Consensus 359 i 359 (629)
T KOG0963|consen 359 I 359 (629)
T ss_pred h
Confidence 5
No 113
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.11 E-value=2.7 Score=49.73 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCC------chHHHHHHHH-------HHHHHHHHHhhhh
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDG------DIEVLQKMET-------VLKDLREKEGELD 461 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~------d~~~~~ki~~-------l~~~L~ek~~el~ 461 (639)
-|+..+-.|+..+|.-..+=..|++++++|...+.-..-+..+. .+++...|.. |.+++.....++.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 46677778888888777777889999999999999887765542 2345444433 4455555666666
Q ss_pred hHHHHHHHHHHHHhhcchHHHHHHHH
Q 006597 462 DLEALNQTLIIRERKSNDELQDARKE 487 (639)
Q Consensus 462 ~~e~lnq~Li~ker~sndELq~ARk~ 487 (639)
.++..|+.|-..-....+++++++..
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777765444444555555443
No 114
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=60.85 E-value=2e+02 Score=29.38 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch----HHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHH
Q 006597 312 ARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNE----NDRKILAEEIEKNAMRNNSLQLASLVQQKADENVR 387 (639)
Q Consensus 312 a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~----~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vl 387 (639)
...++.++..........|+.-++..+..|++++....++. .+-.|++ ..|.-|..+.++++.+..
T Consensus 105 ~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~----------~k~~k~~~~~~~~~~~Y~ 174 (236)
T cd07651 105 IQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNN----------AKLNKAQSSINSSRRDYQ 174 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 34445555556666667778888888888888886655422 1222222 234556667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhhh
Q 006597 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALE-IERLKGSLN 429 (639)
Q Consensus 388 kL~e~hkrEke~~~~kil~LekqL~~kQ~LELE-i~qLkG~L~ 429 (639)
..++....=+..-...+ ..-++.=|.||-+ |+.|+..|.
T Consensus 175 ~~v~~~~~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 175 NAVKALRELNEIWNREW---KAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887765444332222 2334444555433 555565444
No 115
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.68 E-value=3.6e+02 Score=32.24 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 285 NSVEKLMEEKDRLLQSYNEEIKKIQLS 311 (639)
Q Consensus 285 ~sL~r~meEkd~l~~~yneEi~kmQ~~ 311 (639)
.||..+--|||...+.++.|....|+.
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr 30 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQR 30 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444444444443333
No 116
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.50 E-value=4.5e+02 Score=33.31 Aligned_cols=117 Identities=27% Similarity=0.430 Sum_probs=72.1
Q ss_pred eeeeccCCCCCCCcchhhhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHH
Q 006597 217 AWVARSDDYNLKNIIGDHLRKIGDLK-TISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKD 295 (639)
Q Consensus 217 GWvAradDy~~~~~iG~~LrK~gdLK-Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd 295 (639)
-++|++.++|+-..=|+...+.|-|. -|-|- .+.-+..++| +..-...+.+|+.++++ +++++++.+
T Consensus 631 ~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~-------krsrLe~~k~-~~~~~~~~~~l~~~L~~----~r~~i~~~~ 698 (1200)
T KOG0964|consen 631 LRLAKKHELNCITLSGDQVSKKGVLTGGYEDQ-------KRSRLELLKN-VNESRSELKELQESLDE----VRNEIEDID 698 (1200)
T ss_pred HHHHHhcCCCeEEeccceecccCCccccchhh-------hhhHHHHHhh-hHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 36899999998878889999998876 33332 1222333443 34444566777777766 677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Q 006597 296 RLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK-------ELELRGEELEKRET 349 (639)
Q Consensus 296 ~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~-------eL~~r~~~L~k~~~ 349 (639)
+-+.+.+-+|++.+ -....++.+|+.|+.++-.... .|+-..++|+.+.+
T Consensus 699 ~~i~q~~~~~qk~e----~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVE----NDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 77777766655433 3344566677777776665443 34444555554433
No 117
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=60.32 E-value=3e+02 Score=31.33 Aligned_cols=79 Identities=28% Similarity=0.295 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006597 394 KKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIR 473 (639)
Q Consensus 394 krEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~k 473 (639)
+||..++.+--.+|-.. |-.||.+|+|-|--- -|+....-..-+--=+|.-=|.=|+.++.++..-.+.|-
T Consensus 462 QrEnQELnaHNQELnnR------LaaEItrLRtlltgd-GgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk-- 532 (593)
T KOG4807|consen 462 QRENQELNAHNQELNNR------LAAEITRLRTLLTGD-GGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK-- 532 (593)
T ss_pred HHhhHHHHHHHHHHhhH------HHHHHHHHHHHhccC-CCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 45666665555555443 456899999877421 111111111112234667778888888888877777774
Q ss_pred HhhcchHHHHHHH
Q 006597 474 ERKSNDELQDARK 486 (639)
Q Consensus 474 er~sndELq~ARk 486 (639)
||||-|-+
T Consensus 533 -----DELQtalr 540 (593)
T KOG4807|consen 533 -----DELQTALR 540 (593)
T ss_pred -----HHHHHHHh
Confidence 77777643
No 118
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=59.32 E-value=15 Score=36.60 Aligned_cols=27 Identities=41% Similarity=0.503 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 006597 400 LHNRIIQLEKQLDAKQALALEIERLKG 426 (639)
Q Consensus 400 ~~~kil~LekqL~~kQ~LELEi~qLkG 426 (639)
+..+..-||-+||+|..|.-++|+||.
T Consensus 12 AIERnalLE~ELdEKE~L~~~~QRLkD 38 (166)
T PF04880_consen 12 AIERNALLESELDEKENLREEVQRLKD 38 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556688889999999999998873
No 119
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.97 E-value=2.3e+02 Score=29.24 Aligned_cols=84 Identities=18% Similarity=0.355 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006597 255 QNLLVSNLTNMIEVKDKHLEEMKERFTE---TSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLE 331 (639)
Q Consensus 255 ~~~lv~~L~n~I~~knk~l~elE~k~~e---~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe 331 (639)
.+..+..+.+.+..+.....++-.+|.+ ....+..+|++-++.+...-+|-.+-...+..-+++|..+.+.+..+|.
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~ 86 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLN 86 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555544444444455444443 3567778888887777777777777777778888899999988888888
Q ss_pred HHHHHHH
Q 006597 332 SQKKELE 338 (639)
Q Consensus 332 ~k~~eL~ 338 (639)
|.-...-
T Consensus 87 s~E~sfs 93 (207)
T PF05010_consen 87 SLEKSFS 93 (207)
T ss_pred HHHhhHH
Confidence 7665544
No 120
>smart00030 CLb CLUSTERIN Beta chain.
Probab=57.97 E-value=50 Score=34.01 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006597 381 KADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQAL 417 (639)
Q Consensus 381 kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~L 417 (639)
+...++|+-.|+-|++||+|++...+.|++|.+.|.+
T Consensus 43 eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~v 79 (206)
T smart00030 43 KERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGV 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888999999999999999999999988875
No 121
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=57.88 E-value=6.6 Score=24.98 Aligned_cols=20 Identities=40% Similarity=0.688 Sum_probs=12.5
Q ss_pred eeccCCCCCCccccccHHHHhhh
Q 006597 41 FTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 41 ~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
|.||+|+.. .-...+|.+|-
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHH
Confidence 789999733 44566677774
No 122
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=57.49 E-value=3.7e+02 Score=31.35 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHHHHhhhcCCChhhhhhhcc
Q 006597 190 SFEKAYEADHYGKKDWYASNQ 210 (639)
Q Consensus 190 ~fek~Fe~~~~GRkdW~~~~~ 210 (639)
.|--.|.+-++|-.++...+.
T Consensus 108 ~fit~YNAv~R~~~~~~~~~Y 128 (489)
T PF05262_consen 108 TFITIYNAVYRGDLDYFKKKY 128 (489)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 356678888999888887654
No 123
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=57.24 E-value=1.5e+02 Score=26.96 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=16.6
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhc
Q 006597 408 EKQLDAKQALALEIERLKGSLNVMKH 433 (639)
Q Consensus 408 ekqL~~kQ~LELEi~qLkG~L~VmKh 433 (639)
+.+-..++..+.||.+|+..|..|+.
T Consensus 70 ~~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 70 EEEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777777777776554
No 124
>PRK09039 hypothetical protein; Validated
Probab=57.14 E-value=3e+02 Score=30.23 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 006597 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYN 302 (639)
Q Consensus 254 k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yn 302 (639)
..+..++.|...+...+.....++.........++-+..++..|...|.
T Consensus 57 ~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 57 RLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444466688888888888888888888888888877777777766666
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.09 E-value=59 Score=31.62 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Q 006597 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSND 479 (639)
Q Consensus 400 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~snd 479 (639)
+-..|.+|..||. .|.-++..|+..|..+...+. .+++...|.+|..++....+.|+.+.+ +...| +.+
T Consensus 77 ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~v-----s~e 145 (169)
T PF07106_consen 77 LDAEIKELREELA---ELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRS-GSKPV-----SPE 145 (169)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-----CHH
Confidence 3445677776664 577888888999988888875 457888999999999888888887776 44442 344
Q ss_pred HHHHHHHHH
Q 006597 480 ELQDARKEL 488 (639)
Q Consensus 480 ELq~ARk~l 488 (639)
|.+.+.+..
T Consensus 146 e~~~~~~~~ 154 (169)
T PF07106_consen 146 EKEKLEKEY 154 (169)
T ss_pred HHHHHHHHH
Confidence 555444443
No 126
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=56.95 E-value=2.1e+02 Score=33.18 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH------------------------HHH
Q 006597 254 KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIK------------------------KIQ 309 (639)
Q Consensus 254 k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~------------------------kmQ 309 (639)
.+++.+.||-..+...++||++-..-..-.-+-|.++-..--.|.+.|--||. .||
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 66888999999999999999998776666666666666555666666655544 333
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 006597 310 LSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (639)
Q Consensus 310 ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~k 364 (639)
+.--+--....---+-|+.|-++.-.++=+--.++++++..|-.||++|....+|
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leK 521 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3322222222222333333334444444455566677777777777777544444
No 127
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.77 E-value=3e+02 Score=30.08 Aligned_cols=225 Identities=19% Similarity=0.317 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-
Q 006597 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLE- 331 (639)
Q Consensus 253 rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe- 331 (639)
.+.++.+..++.+....|..+.+|-....+.-...+...++-..+-..-++ +- .-++.++.+-.+++..+.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e----in----~kl~eL~~~~~~l~e~~~~ 101 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE----IN----AKLQELRKEYRELKEKRNE 101 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHhhh
Confidence 566777888888888888888877665554444333333332222111111 11 111113333333333222
Q ss_pred --HHHHHHHHHHHHHHHH------hhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHH---HHHHHHHHHHH
Q 006597 332 --SQKKELELRGEELEKR------ETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKL---AEDQKKQKEDL 400 (639)
Q Consensus 332 --~k~~eL~~r~~~L~k~------~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL---~e~hkrEke~~ 400 (639)
.--+.+.+-.+.++.+ ...+..+=++|-+.+..-. ..| .+.-.|.+..+.+..| +..-+.+-.++
T Consensus 102 ~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~---k~l-e~~~k~~e~~~~~~el~aei~~lk~~~~e~ 177 (294)
T COG1340 102 FNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELR---KEL-EDAKKALEENEKLKELKAEIDELKKKAREI 177 (294)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222221 2233333333333332211 111 1222233333444433 33445566677
Q ss_pred HHHHHHHHHHHhHHHH----HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--
Q 006597 401 HNRIIQLEKQLDAKQA----LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRE-- 474 (639)
Q Consensus 401 ~~kil~LekqL~~kQ~----LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ke-- 474 (639)
|++|.+|=.|.++-.. +=-++..++-.-.-|.- +-.+...+++++++++.....++.+++..-.+|..++
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he----~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~ 253 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHE----EFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKA 253 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777754332 11233333333333322 2234456788888888888888888877777776544
Q ss_pred ---hhcchHHHHHHHHHHHHHh
Q 006597 475 ---RKSNDELQDARKELINALK 493 (639)
Q Consensus 475 ---r~sndELq~ARk~lI~~l~ 493 (639)
|..-++|++-.+++-.-|.
T Consensus 254 ~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 254 AKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666766666655554
No 128
>PLN03120 nucleic acid binding protein; Provisional
Probab=56.04 E-value=16 Score=38.75 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=41.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEK 193 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek 193 (639)
++.|-|++. ..+..+|++.|+. |.+..-.-+..+..++|++.|.|.+. .+...|+.|..
T Consensus 6 tVfVgNLs~---------~tTE~dLrefFS~--~G~I~~V~I~~d~~~~GfAFVtF~d~-eaAe~AllLnG 64 (260)
T PLN03120 6 TVKVSNVSL---------KATERDIKEFFSF--SGDIEYVEMQSENERSQIAYVTFKDP-QGAETALLLSG 64 (260)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeecCCCCCEEEEEeCcH-HHHHHHHHhcC
Confidence 467889886 4577899999997 65543333333334689999999654 77788886554
No 129
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=55.33 E-value=2.3e+02 Score=28.44 Aligned_cols=160 Identities=16% Similarity=0.215 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHH
Q 006597 295 DRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQL 374 (639)
Q Consensus 295 d~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~l 374 (639)
..++..|-.+|..--..++..+.+++.....+..+++.-..++..|..+...--...+.+-.+.....+.. ..-++
T Consensus 25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~----~e~~~ 100 (221)
T PF04012_consen 25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD----LEEQA 100 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHH
Confidence 34555555555555555555555566666556665555555555555555432222221111111000000 00011
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HH---HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHH
Q 006597 375 ASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAK-QA---LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL 450 (639)
Q Consensus 375 A~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~k-Q~---LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~ 450 (639)
+. +...+......-+.+...|.+|+.++..- ++ |-.--..-+-+..|-..+.+-+-.+....++.+.
T Consensus 101 ~~---------l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e 171 (221)
T PF04012_consen 101 ER---------LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERME 171 (221)
T ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 11 11233333344444444444444444321 11 2222222233344445555544455566677777
Q ss_pred HHHHHHHhhhhhHHHHH
Q 006597 451 KDLREKEGELDDLEALN 467 (639)
Q Consensus 451 ~~L~ek~~el~~~e~ln 467 (639)
+...+.+...+.+..+.
T Consensus 172 ~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 172 EKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77766666666555555
No 130
>PRK12705 hypothetical protein; Provisional
Probab=55.06 E-value=4e+02 Score=31.10 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHH
Q 006597 329 QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKK 395 (639)
Q Consensus 329 eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkr 395 (639)
+|+.+...|+.+..+|++.+..-......|+... ......--..|.+-+..|.+-+++-+++.-+
T Consensus 92 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~--~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~ 156 (508)
T PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELE--KQLDNELYRVAGLTPEQARKLLLKLLDAELE 156 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3555555555555555554444444444443321 1112223345777777888888888886543
No 131
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=55.01 E-value=4.8e+02 Score=31.98 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhc---cCC-CCchHHHHHHHHHHHHHHHHHhh
Q 006597 401 HNRIIQLEKQLDAKQALALEIERLKGSLNVMKH---MGD-DGDIEVLQKMETVLKDLREKEGE 459 (639)
Q Consensus 401 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKh---m~~-~~d~~~~~ki~~l~~~L~ek~~e 459 (639)
-.||-.|++|..++=.--+-.-.||++.+-+|- ..+ --|.+.+.||+.|+.+++.+..+
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~ 710 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAE 710 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 456666666665543333333344444444443 223 35677778888888777777663
No 132
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.91 E-value=3.9e+02 Score=30.91 Aligned_cols=21 Identities=38% Similarity=0.300 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 006597 328 LQLESQKKELELRGEELEKRE 348 (639)
Q Consensus 328 ~eLe~k~~eL~~r~~~L~k~~ 348 (639)
.||++++..++.+..+.+.++
T Consensus 347 sqlen~k~~~e~~~~e~~~l~ 367 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLK 367 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhh
Confidence 678888888887777776643
No 133
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=53.57 E-value=3.6e+02 Score=30.63 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 006597 399 DLHNRIIQLEKQLDAKQALALEIERLKGSLNV 430 (639)
Q Consensus 399 ~~~~kil~LekqL~~kQ~LELEi~qLkG~L~V 430 (639)
++.+.---|+|+|++|+ -|.+||++++.|
T Consensus 353 aLrkerd~L~keLeekk---releql~~q~~v 381 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKK---RELEQLKMQLAV 381 (442)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 33333344455555442 345555555544
No 134
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=53.32 E-value=4.4e+02 Score=30.99 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhh--HHH
Q 006597 255 QNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQR------IFTDH--EKL 326 (639)
Q Consensus 255 ~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~------i~~e~--ekl 326 (639)
.++-|+.|...+..-+.|... |...++||-+-+-.-.--.+.-+-|+..+++-...-.+. -+..- ...
T Consensus 18 l~~~~~~lqaev~~lr~~~~~----~e~~~~~l~~el~qvr~~~~~Q~seL~~l~~ev~~~~~~peke~~~~~~~~~~n~ 93 (531)
T PF15450_consen 18 LEQWVAELQAEVACLRGHKER----CERATLSLLRELLQVRARVQLQDSELMQLRQEVKQRAQVPEKEACEPSSIQNQNQ 93 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCCCccchhh
Confidence 356678888888887777766 566778877766555555566666777666655543333 12222 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 006597 327 KLQLESQKKELELRGEELEKRETQNENDRKILAEE 361 (639)
Q Consensus 327 ~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e 361 (639)
-..|+.+..|+-.---+|.+..+.-++||+.-+.+
T Consensus 94 m~~lD~rLvevre~L~~irr~q~~q~~erk~~~qe 128 (531)
T PF15450_consen 94 MQQLDKRLVEVREALTQIRRKQALQDSERKGSEQE 128 (531)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45566666655555567778888888888875544
No 135
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=52.40 E-value=4.6e+02 Score=31.01 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=24.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhhchHHHHHHHHHHHH
Q 006597 314 DHFQRIFTDHEKLKLQLESQKKELELRGEE--LEKRETQNENDRKILAEEIEK 364 (639)
Q Consensus 314 ~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~--L~k~~~~~~~er~kl~~e~~k 364 (639)
.+++.|..+++.+.. ....+++..+++. =.++.++-+..|++..+++++
T Consensus 197 ~el~~i~~~~q~~eq--i~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~ 247 (591)
T KOG2412|consen 197 TELQAIQREKQRKEQ--IRERKERSEEKREEAERKRRAHQEELRQKEDEEAEL 247 (591)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888765443 3333333333322 234444555556665544443
No 136
>PLN03121 nucleic acid binding protein; Provisional
Probab=52.16 E-value=23 Score=37.34 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=44.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKA 194 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~ 194 (639)
.|++.|-|++. ..+...|++.|+. |.+..-..+..+.+..|++.|.|.. -.+...|+.|...
T Consensus 5 g~TV~V~NLS~---------~tTE~dLrefFS~--~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnGa 66 (243)
T PLN03121 5 GYTAEVTNLSP---------KATEKDVYDFFSH--CGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSGA 66 (243)
T ss_pred ceEEEEecCCC---------CCCHHHHHHHHHh--cCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCCC
Confidence 47899999986 4567899999997 6665555555566777899999964 3445667665443
No 137
>PRK10698 phage shock protein PspA; Provisional
Probab=51.91 E-value=2.9e+02 Score=28.50 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSY---NEEIKKIQLSARD 314 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~y---neEi~kmQ~~a~~ 314 (639)
+.+++...+=+..-+..+.+|+.-+.+.-..+.++|-....+...| ...+.+.+..|+-
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~ 77 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAEL 77 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667888889999999999999999998876665544 4455555555543
No 138
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.66 E-value=3e+02 Score=33.61 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.8
Q ss_pred EEEeeCCChhch
Q 006597 174 AVVEFHKDWPGL 185 (639)
Q Consensus 174 aVV~F~~dw~Gf 185 (639)
++|.|.--.+|+
T Consensus 404 sLvLlDE~g~Gt 415 (771)
T TIGR01069 404 SLVLFDELGAGT 415 (771)
T ss_pred cEEEecCCCCCC
Confidence 455554444443
No 139
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.36 E-value=4.9e+02 Score=30.99 Aligned_cols=165 Identities=24% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q 006597 248 MEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEK--------------------DRLLQSYNEEIKK 307 (639)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEk--------------------d~l~~~yneEi~k 307 (639)
.++........+..+...+......+++++....+......+.-++. ..+.++-.+-|..
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~ 412 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVE 412 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhh--hchHHHH
Q 006597 308 IQLSARDHFQRIFTDHEKLKLQLE----------SQKKELELRGEELEKRETQNENDRKILAEEIEKNAMR--NNSLQLA 375 (639)
Q Consensus 308 mQ~~a~~~~~~i~~e~ekl~~eLe----------~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~--~~~l~lA 375 (639)
+++.-..|---++++...|+.... .+.+++....+++..-....+....+|..+.++.... .++---=
T Consensus 413 L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~R 492 (594)
T PF05667_consen 413 LAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRR 492 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 006597 376 SLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLN 429 (639)
Q Consensus 376 ~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~ 429 (639)
++| +.+-+.+|+ -+++|=|...-.|..||..|.|+|.
T Consensus 493 IlE-------Iv~NI~KQk----------~eI~KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 493 ILE-------IVKNIRKQK----------EEIEKILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHH-------HHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
No 140
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=51.33 E-value=2.7e+02 Score=28.03 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006597 300 SYNEEIKKIQLSAR-----------DHFQRIFTDHEKLKLQLESQKKELEL 339 (639)
Q Consensus 300 ~yneEi~kmQ~~a~-----------~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (639)
.|++++..+...+. .+++.+..||..|+.-|+.--..|+.
T Consensus 45 ~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~alel 95 (181)
T PF05769_consen 45 QYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQSALEL 95 (181)
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655554 44556666777777766665555554
No 141
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=50.67 E-value=25 Score=39.65 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=47.5
Q ss_pred eeecce--EEEeeccccccCCCcccccCchhHHHHHHhcCC-CCcccccccCCCCCceeEEEeeCCChhchHhHHHHHHH
Q 006597 118 FVWPWT--GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGF-NPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKA 194 (639)
Q Consensus 118 iVWPwm--gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF-~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~ 194 (639)
.++||. ..|-|+|. -.+...|++.|+.-|. .+..++.+-...+.+|+++|+|.+.-.- ..|+..-++
T Consensus 389 ~~~~ps~~L~v~NLp~---------~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~ 458 (481)
T TIGR01649 389 NIQPPSATLHLSNIPL---------SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNH 458 (481)
T ss_pred ccCCCCcEEEEecCCC---------CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcC
Confidence 457885 45668885 3467899999999554 3555655545556689999999984443 355554444
Q ss_pred hhhcC
Q 006597 195 YEADH 199 (639)
Q Consensus 195 Fe~~~ 199 (639)
+...+
T Consensus 459 ~~l~~ 463 (481)
T TIGR01649 459 HQLNE 463 (481)
T ss_pred CccCC
Confidence 44443
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.32 E-value=2.3e+02 Score=30.80 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=20.1
Q ss_pred cccceecCCCCChHHHHHHHhhcCh-hhHHHHHHHHHHHHHhhhcCCCCcccEEEEeCCc
Q 006597 500 HIGLKRMGELDNKPFLEVMNRKYNE-EEAEERASELCSLWEEYLKDPDWHPFKVITAEGK 558 (639)
Q Consensus 500 ~IgiKrmGeld~kpF~~ac~~k~~~-~~~~~~a~~l~s~Wq~~l~dp~WhPFk~v~v~g~ 558 (639)
.|-==|+|-|...|-- +++ .-|-..++-|...=-..|. ...+-|+.|..|..
T Consensus 152 TINGlRLGrl~~~~V~------W~EINAA~Gq~~LLL~~la~~l~-~~f~~y~l~P~Gs~ 204 (314)
T PF04111_consen 152 TINGLRLGRLPNVPVE------WNEINAAWGQTALLLQTLAKKLN-FKFQRYRLVPMGSF 204 (314)
T ss_dssp EETTEEE--BTTB---------HHHHHHHHHHHHHHHHHHHHHCT----SSEEEE--GGG
T ss_pred eECCeeeccCCCCCCC------hHHHHHHHHHHHHHHHHHHHHhC-CCcccceeEecCCC
Confidence 3434588887755421 000 1233344455554444443 66666776654443
No 143
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.24 E-value=2.4e+02 Score=29.05 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=13.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 006597 316 FQRIFTDHEKLKLQLESQKKELE 338 (639)
Q Consensus 316 ~~~i~~e~ekl~~eLe~k~~eL~ 338 (639)
+..+-.+|.+|+.+|+.-..+++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667677666665444433
No 144
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.86 E-value=2.5e+02 Score=33.56 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhH
Q 006597 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDL 463 (639)
Q Consensus 388 kL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~ 463 (639)
..+++.+++-+.+.+++-++-..+..+-....||+++. ..|+.|+.+|.++....+.|
T Consensus 443 ~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~------------------~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARD------------------RRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777766666666553 34555555555555554444
No 145
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.63 E-value=1.5e+02 Score=28.10 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHHH-------HHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006597 397 KEDLHNRIIQLEKQLDAKQ-------ALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQT 469 (639)
Q Consensus 397 ke~~~~kil~LekqL~~kQ-------~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~ 469 (639)
++.+...|..|-...++-+ .|+-+++.|+.+.+.+=-|=| +-.++.+|-..++.||..|..+
T Consensus 46 r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG-----------EK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 46 RDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG-----------EKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443 444444555555444444433 3344455555566666666665
Q ss_pred HH
Q 006597 470 LI 471 (639)
Q Consensus 470 Li 471 (639)
.|
T Consensus 115 Qi 116 (120)
T PF12325_consen 115 QI 116 (120)
T ss_pred HH
Confidence 55
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.29 E-value=2.1e+02 Score=34.06 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm 434 (639)
+|-+....+|-.|++.|..+- .+|++|+++|.-.+.|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~---~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 474 REIRARDRRIERLEKELEEKK---KRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 455566778888888887763 4677777777655543
No 147
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=47.23 E-value=42 Score=29.21 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006597 307 KIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQ 350 (639)
Q Consensus 307 kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~ 350 (639)
.+++.+-++.+.++.+|-.|+.++++-.++|....+.|.+.+..
T Consensus 29 ~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 29 RLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999876543
No 148
>PTZ00121 MAEBL; Provisional
Probab=46.97 E-value=8.5e+02 Score=32.51 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 006597 289 KLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (639)
Q Consensus 289 r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~k 364 (639)
+..+|...|-+.-.+|.+..|..--+.+.+++.+-.+.+.+-.-+..+-..+..+|-+ .+.+|+++++.+.+
T Consensus 1570 r~aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~kk----~eeekKk~Eelkk~ 1641 (2084)
T PTZ00121 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQLKKK 1641 (2084)
T ss_pred HHHhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 3334444555566666666666655666667776666665544443333333333322 33445555444333
No 149
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.83 E-value=5.1e+02 Score=29.86 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH------HHHHH--------
Q 006597 244 ISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEE------IKKIQ-------- 309 (639)
Q Consensus 244 i~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneE------i~kmQ-------- 309 (639)
|.-+.++...|++.|-.-=...|+..|.-=|+-|.-.|..--.++++-.|++-|...|.++ ++++-
T Consensus 167 i~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD 246 (552)
T KOG2129|consen 167 IRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGD 246 (552)
T ss_pred HHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCc
Confidence 3333333334444333333344455555555556666666666677777777777777654 23332
Q ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006597 310 --LSARDHFQRIFTDHEKLKLQLESQKKEL 337 (639)
Q Consensus 310 --~~a~~~~~~i~~e~ekl~~eLe~k~~eL 337 (639)
-.-..|++.+-.|.++||..|-+--+..
T Consensus 247 ~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 247 EAAAEKLHIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235677777778888887776544433
No 150
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.76 E-value=6.8e+02 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 006597 333 QKKELELRGEELEKRETQNENDRKILAEEIE 363 (639)
Q Consensus 333 k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~ 363 (639)
+--+|..-..|+...-+.+..+.+.|+.-.+
T Consensus 174 k~~~lt~~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 174 KNEELNEFNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555544333
No 151
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.66 E-value=3.1e+02 Score=29.81 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCC
Q 006597 357 ILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGD 436 (639)
Q Consensus 357 kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~ 436 (639)
+|..|++..--..++|..|--.|+..-++...-.---|||..-+..---.||+ .+|+|.-+++-=.+++.++.--
T Consensus 29 kLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek---~rqKlshdlq~Ke~qv~~lEgQ-- 103 (307)
T PF10481_consen 29 KLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK---TRQKLSHDLQVKESQVNFLEGQ-- 103 (307)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH---HHHHhhHHHhhhHHHHHHHHHH--
Confidence 45556666666788888888888877777777777778888877777777766 4667766655544444443221
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHH
Q 006597 437 DGDIEVLQKMETVLKDLREKEGELDDLEA 465 (639)
Q Consensus 437 ~~d~~~~~ki~~l~~~L~ek~~el~~~e~ 465 (639)
-...++.|+.|+.+|.-...+|+....
T Consensus 104 --l~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 104 --LNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124466788898888888888865543
No 152
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=46.48 E-value=6.5e+02 Score=31.03 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 006597 393 QKKQKEDLHNRIIQLEKQLDAKQALALEIERLKG 426 (639)
Q Consensus 393 hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG 426 (639)
-.++-+.+...+..++.++......++.+.+|.|
T Consensus 422 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 455 (908)
T COG0419 422 LERELEELEEEIKKLEEQINQLESKELMIAELAG 455 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666666666665544566667765
No 153
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.34 E-value=6.3e+02 Score=30.78 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHH
Q 006597 333 QKKELELRGEELEKRETQNENDRKILA 359 (639)
Q Consensus 333 k~~eL~~r~~~L~k~~~~~~~er~kl~ 359 (639)
.++||+.=..+|..+++.-+.-+++++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444455555555444444443
No 154
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.81 E-value=2.7e+02 Score=26.44 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=18.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 006597 320 FTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKI 357 (639)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~k 357 (639)
-..+++|+.+++...+++..-......+..........
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~ 109 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK 109 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665555444444444443333333
No 155
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=9.1 Score=42.62 Aligned_cols=10 Identities=60% Similarity=1.786 Sum_probs=8.4
Q ss_pred eeeccCCCCC
Q 006597 40 AFTCPYCPKK 49 (639)
Q Consensus 40 ~~~CP~C~gk 49 (639)
+|.|||||.-
T Consensus 374 sfKCPYCP~e 383 (394)
T KOG2817|consen 374 SFKCPYCPVE 383 (394)
T ss_pred eeeCCCCCcc
Confidence 5999999954
No 156
>PRK12704 phosphodiesterase; Provisional
Probab=45.42 E-value=5.6e+02 Score=29.91 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=6.2
Q ss_pred hcCCCCcccEEE
Q 006597 542 LKDPDWHPFKVI 553 (639)
Q Consensus 542 l~dp~WhPFk~v 553 (639)
+.|--=|||++-
T Consensus 274 ~~dg~i~P~~ie 285 (520)
T PRK12704 274 VQDGRIHPARIE 285 (520)
T ss_pred HhcCCcCCCCHH
Confidence 345555666543
No 157
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=45.08 E-value=7.2e+02 Score=31.15 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhhc--cCcccccceecCCCCChHHHHHHHhhcChhhHHHHHHHHHHHHHhhhcCCCCc
Q 006597 479 DELQDARKELINALKEL--SGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWH 548 (639)
Q Consensus 479 dELq~ARk~lI~~l~~~--~~~~~IgiKrmGeld~kpF~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~Wh 548 (639)
+.|-.++..-|..|.+- .-.++.++ |-++.-.|+..- .+.+-..+..+-..|-++|-|+.=+
T Consensus 588 ~il~~~~~~~~q~lq~al~~ld~P~~~---~~~~~p~~Llst-----~~~~s~n~~~~e~~~~~yla~~~d~ 651 (980)
T KOG0980|consen 588 PILDGSLASGIQALQNALYQLDSPLHW---RCLTSPDFLLST-----AENASVNATQFETSFNNYLADGDDA 651 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc---CcCCCHHHHHHH-----HHHHHHHHHHHHHHHhhhcCCchhh
Confidence 33334444444444432 23445555 556666666553 2355566667777788888877654
No 158
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=44.98 E-value=12 Score=24.36 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=13.7
Q ss_pred eeccCCCCCCccccccHHHHhhh
Q 006597 41 FTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 41 ~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
|.||.|... +..-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999733 44556677773
No 159
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=44.53 E-value=35 Score=35.97 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=38.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhch
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGL 185 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf 185 (639)
.++|-|+|. . .+...|++.|+. |.++ .|+.++++ ....|+++|.|.+--.-.
T Consensus 271 ~lfV~NL~~-~--------~~e~~L~~~F~~--fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSP-D--------TDETVLWQLFGP--FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCC-C--------CCHHHHHHHHHh--CCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 377889986 2 366889999999 8875 66666654 457899999997755443
No 160
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=44.16 E-value=1.1e+02 Score=29.53 Aligned_cols=86 Identities=27% Similarity=0.352 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006597 324 EKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNR 403 (639)
Q Consensus 324 ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~k 403 (639)
+++..+|.++...+|.-|.+|+- +-+++..|..+.. .-+.+. +-..=..|+...+.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~~----~~~~~~------------i~~q~~~e~~~r~e~ 75 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQN----AQQIQS------------IQQQFEQEKQERLEQ 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTS----SHHHHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcc----hhhHHH------------HHHHHHHHHHHHHHH
Confidence 45667788888888888888753 3333333333221 111222 223334667778888
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 006597 404 IIQLEKQLDAKQALALEIERLKGSLNVMK 432 (639)
Q Consensus 404 il~LekqL~~kQ~LELEi~qLkG~L~VmK 432 (639)
+-+|..||.+=+.|++.-+=..|+++-+=
T Consensus 76 k~~l~~ql~qv~~L~lgsEv~qg~vE~~v 104 (131)
T PF11068_consen 76 KNQLLQQLEQVQKLELGSEVVQGQVESFV 104 (131)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEeeeeeEEEE
Confidence 89999999999999998776677766443
No 161
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=44.03 E-value=3.1e+02 Score=26.64 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM-EEKDRLLQSYNEEIKKIQLSARDHFQRI 319 (639)
Q Consensus 253 rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m-eEkd~l~~~yneEi~kmQ~~a~~~~~~i 319 (639)
..+..+|.++...........+.-+..|++++.+|++|+ .-.+...-++-.-|+-+|..-+...++|
T Consensus 53 ~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki 120 (146)
T PF08702_consen 53 SEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKI 120 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 356677777777777777777778889999999999999 7788888888888888877777666655
No 162
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=43.34 E-value=4.1e+02 Score=27.75 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006597 292 EEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELEL 339 (639)
Q Consensus 292 eEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (639)
++-.++++.|-++|..-...++..+-+++-.+..+..+++......+.
T Consensus 23 EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k 70 (225)
T COG1842 23 EDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEK 70 (225)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577777777788777888888888887776665555544443333
No 163
>smart00360 RRM RNA recognition motif.
Probab=42.63 E-value=31 Score=25.93 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=30.2
Q ss_pred ccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHH
Q 006597 141 GESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 141 G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~ 189 (639)
+.+...|++.|.. |.+. .+....++ ..++|++.|.|... ..-..|+
T Consensus 7 ~~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~~~~~a~v~f~~~-~~a~~a~ 55 (71)
T smart00360 7 DVTEEELRELFSK--FGKIESVRLVRDKDTGKSKGFAFVEFESE-EDAEKAL 55 (71)
T ss_pred ccCHHHHHHHHHh--hCCEeEEEEEeCCCCCCCCceEEEEeCCH-HHHHHHH
Confidence 4577889999998 7643 44444443 35789999999653 3333343
No 164
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.38 E-value=6.5e+02 Score=29.82 Aligned_cols=207 Identities=19% Similarity=0.230 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 241 LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM----EEKDRLLQSYNEEIKKIQLSARDHF 316 (639)
Q Consensus 241 LKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m----eEkd~l~~~yneEi~kmQ~~a~~~~ 316 (639)
+.++-+--.-+.++...|=+-|+..|++.- -||........-|+-+- .+.-.+.--|+.|+.. .
T Consensus 30 as~ir~sR~rEK~El~~LNDRLA~YIekVR----~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~--------a 97 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQELNDRLAVYIEKVR----FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELAT--------A 97 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHH--------H
Confidence 333433333344455555566666665533 34444433333322211 1123455566666653 3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHH-HHHHHH
Q 006597 317 QRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKL-AEDQKK 395 (639)
Q Consensus 317 ~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL-~e~hkr 395 (639)
.+++++..+-+..++.....|.---++|.+.-.+...++.--.++....-..-++|+ |.+.+-+++-..|.= +..-++
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~le-Ae~~~~krr~~~le~e~~~Lk~ 176 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELE-AEINTLKRRIKALEDELKRLKA 176 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444443333333322222222222211111111111221 222222332221111 111134
Q ss_pred HHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHH---------HHHHHHHHHHHhhh
Q 006597 396 QKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKM---------ETVLKDLREKEGEL 460 (639)
Q Consensus 396 Eke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki---------~~l~~~L~ek~~el 460 (639)
|...+...|..+-++||+ ++.++..++-|...|+.|+.+...+-.+...+. +..+.+|..-+.||
T Consensus 177 en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~ei 254 (546)
T KOG0977|consen 177 ENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREI 254 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHH
Confidence 555555555555555554 678999999999999999987765544444332 33455555555555
No 165
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.70 E-value=4.2e+02 Score=27.42 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006597 413 AKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLI 471 (639)
Q Consensus 413 ~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li 471 (639)
+++.|..+|.+|+..++.++-- ...+.+.++..+.++.+...+++.++...+.|.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~----~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVY----NEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444443331 112233344455555555555555444444444
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.66 E-value=63 Score=34.02 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 006597 404 IIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDD 462 (639)
Q Consensus 404 il~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~ 462 (639)
+++|..||+ .|..||.+|+|+++++-| .|+.+.+.-.+-..+|+.
T Consensus 56 ~~~l~~ql~---~lq~ev~~LrG~~E~~~~-----------~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 56 LTQLQQQLS---DNQSDIDSLRGQIQENQY-----------QLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 467777776 577899999999999888 355666666555555543
No 167
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.64 E-value=7.9e+02 Score=30.60 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHH
Q 006597 309 QLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDR 355 (639)
Q Consensus 309 Q~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er 355 (639)
|..+..++.+.+...++|-..|++|.+....--+.|.+.+..-+.||
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER 937 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAER 937 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777788888888755444433333433333333333
No 168
>PRK00106 hypothetical protein; Provisional
Probab=41.61 E-value=6.5e+02 Score=29.64 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 006597 333 QKKELELRGEELEK 346 (639)
Q Consensus 333 k~~eL~~r~~~L~k 346 (639)
+...|+.|..+|++
T Consensus 109 REE~LekRee~Lek 122 (535)
T PRK00106 109 RATSLDRKDENLSS 122 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 169
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.46 E-value=7.4e+02 Score=30.21 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006597 248 MEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLK 327 (639)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~ 327 (639)
......+.+.-++-+.+++-.-+..++.+....+..---+++--.+-+...+.-.+.+...++.+....|.---+..=..
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~ 235 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSL 235 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 328 L-QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQ 406 (639)
Q Consensus 328 ~-eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~ 406 (639)
. ||+........+-.+|.++......-+..+.--++.++ .|.--+-|.+.+.+++-+
T Consensus 236 ~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~----------------------tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 236 SEELEAINKNMKDQLQELEELERALSQLREELATLRENRE----------------------TVGLLQEELEGLQSKLGR 293 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHhhhhhh
Q 006597 407 LEKQLDAKQALALEIERLKGSLN 429 (639)
Q Consensus 407 LekqL~~kQ~LELEi~qLkG~L~ 429 (639)
|++=-+..--||||...|+.+|+
T Consensus 294 ~~~l~~~~~~LELeN~~l~tkL~ 316 (716)
T KOG4593|consen 294 LEKLQSTLLGLELENEDLLTKLQ 316 (716)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.45 E-value=2.5e+02 Score=28.30 Aligned_cols=69 Identities=25% Similarity=0.387 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCC--chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006597 401 HNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDG--DIEVLQKMETVLKDLREKEGELDDLEALNQTLII 472 (639)
Q Consensus 401 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~--d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ 472 (639)
.+++-+|.++ .+.++.+|..|+..|+..+--..+. -.....++.+|..++.....+|+.....+...|-
T Consensus 68 ~~~~~~l~~~---~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 68 QNKLEKLQKE---IEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3444444444 4467778888888888886533322 2344466778888888888777766666666553
No 171
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=40.97 E-value=14 Score=25.47 Aligned_cols=12 Identities=33% Similarity=1.276 Sum_probs=10.4
Q ss_pred ecCCeeeccCCC
Q 006597 36 ISDEAFTCPYCP 47 (639)
Q Consensus 36 ~~~~~~~CP~C~ 47 (639)
.++.+|.||+|+
T Consensus 10 ~~~k~~~C~~C~ 21 (26)
T PF13465_consen 10 TGEKPYKCPYCG 21 (26)
T ss_dssp SSSSSEEESSSS
T ss_pred CCCCCCCCCCCc
Confidence 467899999997
No 172
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=40.87 E-value=7.6e+02 Score=30.19 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM 291 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m 291 (639)
.+.|+-|-.++..|...+++|-..+.++.-..+.+-
T Consensus 239 Ekqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLe 274 (786)
T PF05483_consen 239 EKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLE 274 (786)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555555555555544444433
No 173
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=40.71 E-value=3.8e+02 Score=26.70 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=65.9
Q ss_pred eeeccCCCCCCCcch--hhhhcccCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-hHHHHHHHhhhchHHHHHHHH
Q 006597 218 WVARSDDYNLKNIIG--DHLRKIGDLKTISEMMEEEAR--KQNLLVSNLTNMIEVKDK-HLEEMKERFTETSNSVEKLME 292 (639)
Q Consensus 218 WvAradDy~~~~~iG--~~LrK~gdLKTi~ei~~E~~r--k~~~lv~~L~n~I~~knk-~l~elE~k~~e~s~sL~r~me 292 (639)
|++.+++..+.+..+ .|||-.+-|-+...|..-+.+ +...+=..+..||+.+.. .-.+.+...-+--.--.++-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566777777666555 899999988888887765554 444444556666665544 334444455555566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006597 293 EKDRLLQSYNEEIKKIQLSARD 314 (639)
Q Consensus 293 Ekd~l~~~yneEi~kmQ~~a~~ 314 (639)
++..|...|-+|..++.+.--.
T Consensus 95 ere~~q~~~E~E~~~~~~KEe~ 116 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKEEE 116 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998877755433
No 174
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.68 E-value=4.7e+02 Score=27.72 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 006597 397 KEDLHNRIIQLEKQLDAK 414 (639)
Q Consensus 397 ke~~~~kil~LekqL~~k 414 (639)
-..+..++..|.-.|+.+
T Consensus 158 ~~~~~~~~~~L~~~l~~e 175 (239)
T COG1579 158 GQELSSKREELKEKLDPE 175 (239)
T ss_pred HHHHHHHHHHHHHhcCHH
Confidence 345555666666666654
No 175
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=40.68 E-value=4.5e+02 Score=27.46 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEE---IKKIQLSARDHFQRIFTDHEKLKLQLES 332 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneE---i~kmQ~~a~~~~~~i~~e~ekl~~eLe~ 332 (639)
+..++-+.+-...-++++.+++.-+.+....+-.+|.....++..|++- +.+++..|+.- +-.+++.|-.+.=.
T Consensus 16 ~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A---l~~g~E~LAr~al~ 92 (225)
T COG1842 16 NELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA---LQAGNEDLAREALE 92 (225)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHH
Confidence 3344444455556678888888888888888888888888888777754 33444444333 33455555554444
Q ss_pred HHHHHHHHH
Q 006597 333 QKKELELRG 341 (639)
Q Consensus 333 k~~eL~~r~ 341 (639)
.+..|+..+
T Consensus 93 ~~~~le~~~ 101 (225)
T COG1842 93 EKQSLEDLA 101 (225)
T ss_pred HHHHHHHHH
Confidence 444444333
No 176
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=40.53 E-value=45 Score=31.88 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=40.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.+.|-|++. ..+...|++.|.. |.++ .+....+. .-+.||+.|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSW---------GTDDASLRDAFAH--FGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhc--CCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 466789986 4578899999999 8664 44444443 24789999999865 55566664
No 177
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.51 E-value=5e+02 Score=27.97 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=71.3
Q ss_pred hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 236 RKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDH 315 (639)
Q Consensus 236 rK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~ 315 (639)
.|.+|||.+..+..+-...--.|.+-|...++-+......+-.- ..+.. -++..++--..+..--+..+..
T Consensus 114 ~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~r~-----~e~~~----iE~~l~~ai~~~~~~~~~~~~~ 184 (267)
T PF10234_consen 114 SKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRALARP-----LELNE----IEKALKEAIKAVQQQLQQTQQQ 184 (267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHcCC-----cCHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999888888888888988887777666665311 11111 1222222222222222233444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 006597 316 FQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNEN 353 (639)
Q Consensus 316 ~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~ 353 (639)
...+-.+-..|...++.++.|||+-.|.|.-++.-.+.
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPA 222 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPA 222 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 55666677788888888999999999999888766553
No 178
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=40.18 E-value=5.9e+02 Score=28.73 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHH
Q 006597 307 KIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEE 361 (639)
Q Consensus 307 kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e 361 (639)
+||..|--.....-..|-||-..||+.+..--.-..+=+.+.+.-+-+|..|.+.
T Consensus 100 nmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQ 154 (561)
T KOG1103|consen 100 NMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQ 154 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH
Confidence 4455544444444455555555555554444444444455555555555555433
No 179
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.16 E-value=6.8e+02 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 257 LLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDH 315 (639)
Q Consensus 257 ~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~ 315 (639)
.++..|..++......+.++...|....-.+..+-.+.+.+.+...+|+.++.......
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~ 346 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQ 346 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777778888888888888888888888888888888888876665443
No 180
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=40.09 E-value=4.6e+02 Score=27.46 Aligned_cols=67 Identities=25% Similarity=0.376 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 006597 298 LQSYNEEIKKIQLSARDHFQRIFTDHEKLK------LQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (639)
Q Consensus 298 ~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~------~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~k 364 (639)
+..|.++++..+..-.+...+|..=-++++ ..|+.+..+++.-...|......+..+|..|+.+...
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655555554443333332 2455555555555555555555555555555544443
No 181
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.47 E-value=3.3e+02 Score=25.52 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHH---------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHH
Q 006597 411 LDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQK---------METVLKDLREKEGELDDLEALNQTLIIRERKSNDEL 481 (639)
Q Consensus 411 L~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~k---------i~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndEL 481 (639)
..++|.|+.++.+++..+.=+.-++ +|..+++- .+++..+|.++.+-+ +.--.+|..++..-...+
T Consensus 27 ~~q~~~le~q~~e~~~~~~EL~~L~--~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l 101 (121)
T PRK09343 27 LQQKSQIDLELREINKALEELEKLP--DDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC--CcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887777776 46677754 355555555544433 344555555555555666
Q ss_pred HHHHHHHHHHHhhc
Q 006597 482 QDARKELINALKEL 495 (639)
Q Consensus 482 q~ARk~lI~~l~~~ 495 (639)
.+.+..|-.-+...
T Consensus 102 ~e~q~~l~~ll~~~ 115 (121)
T PRK09343 102 KELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHhc
Confidence 66666666555543
No 182
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.11 E-value=13 Score=40.61 Aligned_cols=14 Identities=43% Similarity=1.153 Sum_probs=10.5
Q ss_pred cCCeeeccCCCCCC
Q 006597 37 SDEAFTCPYCPKKR 50 (639)
Q Consensus 37 ~~~~~~CP~C~gkk 50 (639)
+--+|.|||||.-.
T Consensus 373 G~~~FKCPYCP~~~ 386 (396)
T COG5109 373 GVLSFKCPYCPEMS 386 (396)
T ss_pred CcEEeeCCCCCcch
Confidence 33489999999653
No 183
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.24 E-value=8.4e+02 Score=29.95 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006597 247 MMEEEARKQNLLVSNLTNMIEVKDKHLEEMK 277 (639)
Q Consensus 247 i~~E~~rk~~~lv~~L~n~I~~knk~l~elE 277 (639)
.++-..-|+.+.|.-|.+.|+.-...|..+|
T Consensus 343 ~~q~eLdK~~~~i~~Ln~~leaReaqll~~e 373 (961)
T KOG4673|consen 343 DVQLELDKTKKEIKMLNNALEAREAQLLADE 373 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777777778887777766666554
No 184
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=38.22 E-value=47 Score=37.92 Aligned_cols=66 Identities=30% Similarity=0.402 Sum_probs=46.5
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhchHhHHHHHHHhhhcC
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEKAYEADH 199 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~fek~Fe~~~ 199 (639)
+.|.|||. |=+| +.|+|-|++++=...-|..|.+..| .+|+|||+|.. -.+..-|+.--+-|+..+
T Consensus 47 vfItNIpy----d~rW-----qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~-~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 47 VFITNIPY----DYRW-----QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKD-PENVQKALEKLNKYEVNG 113 (608)
T ss_pred EEEecCcc----hhhh-----HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeC-HHHHHHHHHHhhhccccC
Confidence 77999997 2234 6789988886555666777777777 68999999964 455555555555566544
No 185
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.22 E-value=4.6e+02 Score=26.93 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH-HHHHHHHhhhhchHHHHHHHH
Q 006597 301 YNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKIL-AEEIEKNAMRNNSLQLASLVQ 379 (639)
Q Consensus 301 yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl-~~e~~kn~~~~~~l~lA~~eQ 379 (639)
|.++..+.......++.++-.....+-..|+.-++..+.+|++++........-+... ..+.+|. ...+..|....
T Consensus 93 ~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~---~~K~~k~~~~~ 169 (239)
T cd07647 93 FREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKL---KKKAAQCKTSA 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHHHHHH
Confidence 3333444444445556666666666667788888888889998876432211111000 1112221 12344555666
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhhhhh
Q 006597 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALE-IERLKGSLNVM 431 (639)
Q Consensus 380 ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELE-i~qLkG~L~Vm 431 (639)
.+|+.+-...|+...+=...-...+... ++.=|.||-+ |..|+..|.+=
T Consensus 170 ~~a~~~Y~~~v~~l~~~~~~~~~~~~~~---~~~~Q~lEe~Ri~~lk~~l~~y 219 (239)
T cd07647 170 EEADSAYKSSIGCLEDARVEWESEHATA---CQVFQNMEEERIKFLRNALWVH 219 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766666655544333333222222 2222555443 56666666543
No 186
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=37.70 E-value=11 Score=44.78 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=13.2
Q ss_pred HHHHhHHHHHHHHHHhcccC
Q 006597 77 KEKANHLALAKYLEKDLRDA 96 (639)
Q Consensus 77 k~ka~H~aLak~Le~dl~~~ 96 (639)
--+..+++|..|....|+..
T Consensus 71 NLk~l~~~i~~yy~e~L~~~ 90 (713)
T PF05622_consen 71 NLKKLLRNIKSYYQEELGQQ 90 (713)
T ss_dssp HHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 44678888888888877764
No 187
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=37.45 E-value=8.8e+02 Score=29.92 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 240 DLKTISEMMEEEARKQNLLVSNLTNMIEVKD 270 (639)
Q Consensus 240 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~kn 270 (639)
++.|..+...+..+...+++..+...+..-+
T Consensus 480 ~~~~~~~~~~~~~~~l~~llee~~~~~~~~~ 510 (809)
T KOG0247|consen 480 DLPTFEEQDKNDKETLDQLLEELEKRILLRT 510 (809)
T ss_pred CchhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655444333
No 188
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=37.17 E-value=7.7e+02 Score=29.17 Aligned_cols=28 Identities=36% Similarity=0.302 Sum_probs=14.1
Q ss_pred HHHHHHhHHHH----HHHHHHHhhhhhhhhhc
Q 006597 406 QLEKQLDAKQA----LALEIERLKGSLNVMKH 433 (639)
Q Consensus 406 ~LekqL~~kQ~----LELEi~qLkG~L~VmKh 433 (639)
.|.-||-.+|+ +-.|.+.|..-|+.||-
T Consensus 237 kLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d 268 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD 268 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443 33455566666666654
No 189
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.11 E-value=3.6e+02 Score=25.36 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 006597 317 QRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK 364 (639)
Q Consensus 317 ~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~k 364 (639)
..+=.+...++.++..-..+.+.-...|+..++.-+.+|..|+.++..
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333344444444444445555555555555555555556555555444
No 190
>PRK01156 chromosome segregation protein; Provisional
Probab=37.08 E-value=8.6e+02 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=6.4
Q ss_pred CCcccccCchhHHHHH
Q 006597 136 DGRSVGESGSKLRDEL 151 (639)
Q Consensus 136 dg~~~G~s~~~L~d~f 151 (639)
||.++..+.....+.+
T Consensus 102 ~g~~~~~~~~~~~~~i 117 (895)
T PRK01156 102 DGSIIAEGFDDTTKYI 117 (895)
T ss_pred CCeeccccHHHHHHHH
Confidence 4444433333334433
No 191
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=37.01 E-value=22 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.584 Sum_probs=11.8
Q ss_pred eEeecCCeeeccCCCC
Q 006597 33 SVKISDEAFTCPYCPK 48 (639)
Q Consensus 33 kVk~~~~~~~CP~C~g 48 (639)
+|...+++|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 6666678999999974
No 192
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=36.93 E-value=11 Score=45.80 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 006597 285 NSVEKLMEEKDRLLQSYNEEIKKIQLSA-------RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKI 357 (639)
Q Consensus 285 ~sL~r~meEkd~l~~~yneEi~kmQ~~a-------~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~k 357 (639)
.+|++.+++-..-|++--.+|++=+..+ -++.++.-..-+|-+..|+....+|......+.+--+.++.-+++
T Consensus 105 ~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~ 184 (859)
T PF01576_consen 105 AKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQ 184 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 4566666665555555555555444443 233444444455555555555555555555555555555555555
Q ss_pred HHHHHHH
Q 006597 358 LAEEIEK 364 (639)
Q Consensus 358 l~~e~~k 364 (639)
|+.++..
T Consensus 185 lE~qL~E 191 (859)
T PF01576_consen 185 LEAQLNE 191 (859)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5544443
No 193
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=36.25 E-value=23 Score=27.43 Aligned_cols=11 Identities=36% Similarity=1.141 Sum_probs=8.6
Q ss_pred CeeeccCCCCC
Q 006597 39 EAFTCPYCPKK 49 (639)
Q Consensus 39 ~~~~CP~C~gk 49 (639)
..++||+|...
T Consensus 20 ~~~~Cp~CG~~ 30 (46)
T PRK00398 20 TGVRCPYCGYR 30 (46)
T ss_pred CceECCCCCCe
Confidence 37999999744
No 194
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.84 E-value=4.7e+02 Score=26.28 Aligned_cols=57 Identities=37% Similarity=0.391 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHH
Q 006597 414 KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKEL 488 (639)
Q Consensus 414 kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~l 488 (639)
-+.|..|.+.|+-.+. .+..+++.|..++.....++..++.=.++|+ .=+..||+-.
T Consensus 99 ~~~~~~e~~~l~~e~~-----------~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~-------~Im~RARkl~ 155 (161)
T TIGR02894 99 DQALQKENERLKNQNE-----------SLQKRNEELEKELEKLRQRLSTIEEDYQTLI-------DIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3445555555554443 3345666677777666666666666666666 3445566543
No 195
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=35.66 E-value=1.7e+02 Score=27.02 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=43.3
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 230 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
.+|..|.+- |..+++...+..+....+ +... -.+.++=....+.+.+|+-+++=|+++.++|+| |.+||
T Consensus 33 sF~~~L~~a--l~~vn~~q~~a~~~~~~~---~~G~-----~~l~~vmiA~~kA~lslq~~vqVRNKlveAYqE-IMrMq 101 (102)
T PRK00732 33 SFGALLKDA--MGSVLEAGRKSDAQTAAM---ASGK-----ANLMDVVTAVAETDVAVSTLVSVRDRVIQAYEE-IMRMP 101 (102)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 466666653 444444444433333222 2222 135566666678899999999999999999995 55554
No 196
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=35.03 E-value=20 Score=24.17 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.3
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+|.|+.|... +-.+..|+.|-
T Consensus 1 ~~~C~~C~~~---F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGKT---FSSLSALREHK 21 (27)
T ss_dssp SEEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCccCCc---cCChhHHHHHh
Confidence 5899999733 55688899995
No 197
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=34.94 E-value=1e+03 Score=29.87 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 006597 332 SQKKELELRGEELEKRETQ 350 (639)
Q Consensus 332 ~k~~eL~~r~~~L~k~~~~ 350 (639)
+++.-|+.|..+++++.++
T Consensus 568 aRk~liE~rKe~~E~~~~~ 586 (988)
T KOG2072|consen 568 ARKSLIEKRKEDLEKQNVE 586 (988)
T ss_pred HHHHHHHHHHhHHHHHHHH
Confidence 3444555555555554333
No 198
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=34.76 E-value=54 Score=34.59 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=55.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCC-CCcccccccCCCC-CceeEEEeeCCChhchHhHHHHHHHhhhc
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGF-NPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEKAYEAD 198 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF-~p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~fek~Fe~~ 198 (639)
|=.++|-|.++ |.....|++-|.. | .+.+|..=|++.| -.|++-|.|...-.++.--..|+. |..+
T Consensus 83 ~~~v~v~NL~~---------~V~~~Dl~eLF~~--~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ld 150 (243)
T KOG0533|consen 83 STKVNVSNLPY---------GVIDADLKELFAE--FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALD 150 (243)
T ss_pred cceeeeecCCc---------CcchHHHHHHHHH--hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccC
Confidence 34467888887 7888999999999 8 7888888888888 559999999999888887778887 6655
Q ss_pred CC
Q 006597 199 HY 200 (639)
Q Consensus 199 ~~ 200 (639)
|.
T Consensus 151 G~ 152 (243)
T KOG0533|consen 151 GR 152 (243)
T ss_pred Cc
Confidence 43
No 199
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.55 E-value=3e+02 Score=23.66 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006597 274 EEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEE 343 (639)
Q Consensus 274 ~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~ 343 (639)
+.||......-..|+.+. .+-..++..+.-++.-...|-..+...+.++.+|+.++++-.++|+..-.|
T Consensus 1 ~~Lea~~~~Lr~rLd~~~-rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLT-RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 200
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.27 E-value=5.4e+02 Score=26.58 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 006597 330 LESQKKELELRGEELEKRETQ 350 (639)
Q Consensus 330 Le~k~~eL~~r~~~L~k~~~~ 350 (639)
+......|+.|...|++...+
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ 36 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINK 36 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666665543
No 201
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.26 E-value=8.7e+02 Score=28.95 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=42.7
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc
Q 006597 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET 283 (639)
Q Consensus 230 ~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~ 283 (639)
..+.|++---+ ++++..|-..+-+++...++++|+...+...+|++++++.
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665533 8889999999999999999999999999999999999843
No 202
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.05 E-value=7.7e+02 Score=28.28 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHH
Q 006597 417 LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLR 454 (639)
Q Consensus 417 LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ 454 (639)
|+-++...+-+|+.++. ....+++.|..+.....
T Consensus 215 l~~~l~~~q~~l~eL~~----~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 215 LNSELSADQKKLEELRA----NESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHH
Confidence 34444444444554444 24566666776665544
No 203
>PHA00616 hypothetical protein
Probab=33.88 E-value=14 Score=29.33 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=16.9
Q ss_pred eeeccCCCCCCccccccHHHHhhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+|.||-|+.. +-..++|..|-.
T Consensus 1 pYqC~~CG~~---F~~~s~l~~H~r 22 (44)
T PHA00616 1 MYQCLRCGGI---FRKKKEVIEHLL 22 (44)
T ss_pred CCccchhhHH---HhhHHHHHHHHH
Confidence 4899999854 567888888854
No 204
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=33.86 E-value=5e+02 Score=31.21 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE------KDRLLQSYNEEIKKIQLSARDHFQR 318 (639)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meE------kd~l~~~yneEi~kmQ~~a~~~~~~ 318 (639)
.+......++..+-|.-|...|....+.++.+|.......+++.+|..+ +..|+++|+.-.+.-+...+++.++
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334456777889999999999999999999999999999999866 5788899999888888888888887
Q ss_pred HHhhhHHHH
Q 006597 319 IFTDHEKLK 327 (639)
Q Consensus 319 i~~e~ekl~ 327 (639)
|=.--+.++
T Consensus 154 l~~~~~~~q 162 (632)
T PF14817_consen 154 LQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHH
Confidence 755544443
No 205
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=33.74 E-value=1e+03 Score=29.56 Aligned_cols=95 Identities=27% Similarity=0.409 Sum_probs=64.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHh
Q 006597 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQL-DAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEG 458 (639)
Q Consensus 380 ~kade~vlkL~e~hkrEke~~~~kil~LekqL-~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~ 458 (639)
|..+|+++|.+|.||.|...+.+-|.+-+++| ..||.-++|+.++|--++ . ..-+++.++=+|
T Consensus 454 q~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~--e---------al~~~k~~q~kL----- 517 (861)
T PF15254_consen 454 QSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVE--E---------ALVNVKSLQFKL----- 517 (861)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--H---------HHHHHHHHhhhH-----
Confidence 34578899999999999999999999888875 678888999888764332 1 122333344333
Q ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Q 006597 459 ELDDLEALNQTLIIRERKSNDELQDARKELINALK 493 (639)
Q Consensus 459 el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~ 493 (639)
+.-|.-|+.|-|--|+-..|+...| +|+.+|.
T Consensus 518 --e~sekEN~iL~itlrQrDaEi~RL~-eLtR~LQ 549 (861)
T PF15254_consen 518 --EASEKENQILGITLRQRDAEIERLR-ELTRTLQ 549 (861)
T ss_pred --HHHHhhhhHhhhHHHHHHHHHHHHH-HHHHHHH
Confidence 3444567777777777666665443 4555553
No 206
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=33.25 E-value=8.1e+02 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=43.4
Q ss_pred HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006597 417 LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIR 473 (639)
Q Consensus 417 LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~k 473 (639)
-+-||+.|+-+|.+--+.. .-.|+-+.+..|.+-|-.|-..|+.+-.-+.+|.+.
T Consensus 367 ke~E~q~lr~~l~~~~~~s--~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lq 421 (511)
T PF09787_consen 367 KESEIQKLRNQLSARASSS--SWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQ 421 (511)
T ss_pred HHHHHHHHHHHHHHHhccC--CcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhcccc
Confidence 3788888888877755433 345778899999999999999999888888888763
No 207
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=32.93 E-value=3.4e+02 Score=28.47 Aligned_cols=105 Identities=23% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHH
Q 006597 403 RIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQ 482 (639)
Q Consensus 403 kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq 482 (639)
.|-.|+.++.+-++..---.++.-+|+++++.-...-..+..+.++-...|...... |...=-+.|.+|+
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~----------l~~~~~k~~~~l~ 138 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKE----------LSAECSKLNNELN 138 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 344455555544444444444556666666643332222222222222233222222 1111122344444
Q ss_pred HHHH---HHHHHHhhc-cC-cccccceecCCCCChHHHHHH
Q 006597 483 DARK---ELINALKEL-SG-RAHIGLKRMGELDNKPFLEVM 518 (639)
Q Consensus 483 ~ARk---~lI~~l~~~-~~-~~~IgiKrmGeld~kpF~~ac 518 (639)
..-. .++.-+... ++ ....+| -|-.+|..||+..|
T Consensus 139 ~l~~~v~~l~~~~~~~~~~~~~~~~~-flsq~~l~~Y~~~e 178 (256)
T PF14932_consen 139 QLLGEVSKLASELAHAHSGQQQNPPV-FLSQMPLEQYLSQE 178 (256)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCc-hhhhCCHHHHHHHH
Confidence 4443 444444433 22 345666 88899999999876
No 208
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.72 E-value=6.1e+02 Score=26.72 Aligned_cols=179 Identities=27% Similarity=0.367 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHH
Q 006597 262 LTNMIEVKDKHLEEMKERFTETSNSVEKLM--EEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHE-KLKLQLESQKKELE 338 (639)
Q Consensus 262 L~n~I~~knk~l~elE~k~~e~s~sL~r~m--eEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~e-kl~~eLe~k~~eL~ 338 (639)
|-..|+..-+.+++-=..|+.+..++...- .+++++-.--..||+|+|+ .|+.+..-+..++ |=+..|..-++-++
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR-~RdQIK~W~~~~diKdk~~L~e~Rk~IE 84 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQR-LRDQIKTWLSSNDIKDKKKLLENRKLIE 84 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHH-HHHHHHHHccCcccccHHHHHHHHHHHH
Confidence 345566666666666666666666665533 4578999999999999985 4777666554332 12223444444444
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006597 339 LRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASL--VQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (639)
Q Consensus 339 ~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~--eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~ 416 (639)
.+...- +-++.+.+-.+--+..|..|+. .+.++...+. .=+-+-|-+|..|.+ .
T Consensus 85 ~~MErF-----------K~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~----------~wl~~~Id~L~~QiE---~ 140 (233)
T PF04065_consen 85 EQMERF-----------KVVEKESKTKAFSKEGLMAASKLDPKEKEKEEAR----------DWLKDSIDELNRQIE---Q 140 (233)
T ss_pred HHHHHH-----------HHHHHHhcccccchhhhhcccccCcchHHHHHHH----------HHHHHHHHHHHHHHH---H
Confidence 332222 1122232323333556655441 1111111111 223467888888876 6
Q ss_pred HHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006597 417 LALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (639)
Q Consensus 417 LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~L 470 (639)
+|.|++.|.++..=-|+ ++..-.++++|..-++--..=+..||.+-..|
T Consensus 141 ~E~E~E~L~~~~kKkk~-----~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 141 LEAEIESLSSQKKKKKK-----DSTKQERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHHhhccCcc-----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988775321111 22334455555555544444444444443333
No 209
>PTZ00332 paraflagellar rod protein; Provisional
Probab=32.64 E-value=8.9e+02 Score=28.57 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHh--hhHHHHHHH
Q 006597 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQK--ADENVRKLA 390 (639)
Q Consensus 313 ~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~k--ade~vlkL~ 390 (639)
++.+.+.|++|+.-..+-=+++.+|+.+-+.|. .+|...-+.. |++..-|.++ +-+..+..+
T Consensus 305 k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l~-------~eR~~eV~rR---------Ie~~~rEekRr~~yeqFl~~a 368 (589)
T PTZ00332 305 KEKSERFIRENEDRQEEAWNKIQDLERQLQRLG-------TERFEEVKRR---------IEENDREEKRRVEYQQFLEVA 368 (589)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH---------HHHHHHHHHhHhHHHHHHHHH
Confidence 667888999998888888888888888666665 2333321110 1122222222 223344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccC
Q 006597 391 EDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMG 435 (639)
Q Consensus 391 e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~ 435 (639)
..|+ |.|++-|.-.-+-+.+.-.|.
T Consensus 369 sQHk--------------------qrL~~tv~Ncd~a~~~~~~le 393 (589)
T PTZ00332 369 GQHK--------------------KLLELTVYNCDLALRCTGLVE 393 (589)
T ss_pred HHHH--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5554 688999888888887766654
No 210
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=32.41 E-value=1.6e+02 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 271 KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 271 k~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
..+.++=....+.+.+|+-+++=|+++.++|+| |.+||
T Consensus 64 ~~lhevmiA~~kA~lslq~~vqVRNKlv~AYqE-IMrMq 101 (102)
T PRK12728 64 VDLHDVMIAAQKASISLQLTVQIRNKVVEAYQE-IMRMQ 101 (102)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 456666677788899999999999999999995 55554
No 211
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=32.37 E-value=20 Score=28.93 Aligned_cols=10 Identities=30% Similarity=1.045 Sum_probs=7.4
Q ss_pred eeccCCCCCCc
Q 006597 41 FTCPYCPKKRK 51 (639)
Q Consensus 41 ~~CP~C~gkkK 51 (639)
..|||| |.+.
T Consensus 4 kPCPFC-G~~~ 13 (61)
T PF14354_consen 4 KPCPFC-GSAD 13 (61)
T ss_pred cCCCCC-CCcc
Confidence 579999 6654
No 212
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.12 E-value=45 Score=23.22 Aligned_cols=18 Identities=44% Similarity=0.641 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 006597 396 QKEDLHNRIIQLEKQLDA 413 (639)
Q Consensus 396 Eke~~~~kil~LekqL~~ 413 (639)
|.+.+.++|..||+||..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567788999999999974
No 213
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.96 E-value=5.6e+02 Score=26.06 Aligned_cols=83 Identities=18% Similarity=0.325 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK 335 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~ 335 (639)
.++++...+.|..-...+......+..++.+|+. .+.-+..-+.++..+++.+.+ +-+.+-++|...|+.-..
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~----~~~el~k~~~~l~~L~~L~~d---knL~eReeL~~kL~~~~~ 132 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLKD----KDEELLKTKDELKHLKKLSED---KNLAEREELQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHH
Confidence 3444455555555555554444444443333332 222222333344444443321 123344555555554444
Q ss_pred HHHHHHHHHH
Q 006597 336 ELELRGEELE 345 (639)
Q Consensus 336 eL~~r~~~L~ 345 (639)
+|+...+.+.
T Consensus 133 ~l~~~~~ki~ 142 (194)
T PF15619_consen 133 KLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 214
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=31.63 E-value=25 Score=33.71 Aligned_cols=13 Identities=46% Similarity=1.081 Sum_probs=10.2
Q ss_pred cCCeeeccCCCCC
Q 006597 37 SDEAFTCPYCPKK 49 (639)
Q Consensus 37 ~~~~~~CP~C~gk 49 (639)
+++.|.||.|.+.
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 3677999999855
No 215
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=31.50 E-value=2.5e+02 Score=28.22 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=27.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006597 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA 413 (639)
Q Consensus 380 ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~ 413 (639)
++||.=|.-=.=.|.||.|++...|..||..+..
T Consensus 110 ~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 110 QKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666678999999999999999988765
No 216
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=31.45 E-value=2.6e+02 Score=32.02 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHH
Q 006597 240 DLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLM 291 (639)
Q Consensus 240 dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~m 291 (639)
|.+.+-++++.+.-+..--+..|+.+-...|+|+|-|+++|...+.-|.+--
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrr 159 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRR 159 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 4455555566665555556678999999999999999999988877776643
No 217
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.39 E-value=4.9e+02 Score=25.15 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006597 390 AEDQKKQKEDLHNRIIQLEKQLDAKQ 415 (639)
Q Consensus 390 ~e~hkrEke~~~~kil~LekqL~~kQ 415 (639)
.+++....+.+-.+|..||.+|+.-.
T Consensus 68 ~~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 68 SEKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 34445556688889999888887654
No 218
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=31.21 E-value=1.1e+03 Score=29.02 Aligned_cols=104 Identities=21% Similarity=0.241 Sum_probs=66.4
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006597 342 EELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEI 421 (639)
Q Consensus 342 ~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi 421 (639)
.+|.-.-+..+.-|++|++..+..-.. -|..-.+.+..|-..|+++-..+-+++..||+.| +.||...
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~ELee---------~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r 185 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRELEE---------AQRLHQEQLSSLTQAHQEALASLTSKAEELEKSL---ESLETRR 185 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 345444567778888887666542111 1233445677888999999999999999999999 5566666
Q ss_pred HHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 006597 422 ERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQ 468 (639)
Q Consensus 422 ~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq 468 (639)
.+....|.+. ...-|.|.+.|.-.-++++.--++.+
T Consensus 186 ~~e~~~La~~-----------q~e~d~L~~qLsk~~~~le~q~tlv~ 221 (739)
T PF07111_consen 186 AGEAKELAEA-----------QREADLLREQLSKTQEELEAQVTLVE 221 (739)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555433 33445666666666666554433333
No 219
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.83 E-value=1.3e+03 Score=29.78 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Q 006597 413 AKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELI 489 (639)
Q Consensus 413 ~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI 489 (639)
-.+.||-.|.+|++.+ +.- ..--..+.-+|.+++..+.+-..+++.++...-.+.-+.-.-|+||++.+.+|-
T Consensus 403 ~~~elE~r~k~l~~sv--er~--~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~ 475 (1141)
T KOG0018|consen 403 RRAELEARIKQLKESV--ERL--DKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLL 475 (1141)
T ss_pred HHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3445555566665554 111 001123334566677777777777777777776666667777777777665543
No 220
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=30.83 E-value=3.5e+02 Score=23.36 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 006597 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIE 363 (639)
Q Consensus 313 ~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~ 363 (639)
.+.+++++.+|..|+.-|.----.+..|+.+|..-+...-.+|..+....+
T Consensus 5 ~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~ 55 (68)
T PF11577_consen 5 QQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQ 55 (68)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999988888999999998887777666666654433
No 221
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=30.49 E-value=21 Score=31.44 Aligned_cols=14 Identities=29% Similarity=0.952 Sum_probs=4.9
Q ss_pred ecCCeeeccCCCCC
Q 006597 36 ISDEAFTCPYCPKK 49 (639)
Q Consensus 36 ~~~~~~~CP~C~gk 49 (639)
..+..|.||||...
T Consensus 18 ~l~~~F~CPfC~~~ 31 (81)
T PF05129_consen 18 KLPKVFDCPFCNHE 31 (81)
T ss_dssp --SS----TTT--S
T ss_pred CCCceEcCCcCCCC
Confidence 35689999999733
No 222
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.57 E-value=1.2e+03 Score=29.20 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006597 388 KLAEDQKKQKEDLHNRIIQLEKQLD 412 (639)
Q Consensus 388 kL~e~hkrEke~~~~kil~LekqL~ 412 (639)
+-+++..+|+.++-.++..++|.+|
T Consensus 670 ~q~eel~Ke~kElq~rL~~q~KkiD 694 (988)
T KOG2072|consen 670 RQIEELEKERKELQSRLQYQEKKID 694 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456666677777777777777665
No 223
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=29.54 E-value=1.9e+02 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=28.9
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 272 ~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
.+.++=....+...+++-+++=|.++.++|+| |.+||
T Consensus 60 dlhevmIA~~kA~ls~q~~vqVRNKlveAYqE-IMrMQ 96 (97)
T PRK03907 60 DLHQAAIAIGKAETSMKLMLEVRNKAISAYKE-ILRTQ 96 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 45555556677889999999999999999995 55554
No 224
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=29.39 E-value=28 Score=28.49 Aligned_cols=15 Identities=27% Similarity=0.935 Sum_probs=11.0
Q ss_pred eEeecCCeeeccCCC
Q 006597 33 SVKISDEAFTCPYCP 47 (639)
Q Consensus 33 kVk~~~~~~~CP~C~ 47 (639)
+.....-+|+||+|.
T Consensus 37 ~~~~~~i~y~C~~Cg 51 (54)
T PF10058_consen 37 KEEFEEIQYRCPYCG 51 (54)
T ss_pred cccCCceEEEcCCCC
Confidence 444455689999996
No 225
>smart00400 ZnF_CHCC zinc finger.
Probab=29.33 E-value=73 Score=25.43 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.2
Q ss_pred hhCCCceEeecCCeeeccCCCCCCccccccHHHHhhhhcC
Q 006597 27 LKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGV 66 (639)
Q Consensus 27 Lk~g~~kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~gv 66 (639)
=++.++.|....+.|+|=.|..+ .+.=+|+++-.|+
T Consensus 10 d~~pSf~v~~~kn~~~Cf~cg~g----Gd~i~fv~~~~~~ 45 (55)
T smart00400 10 EKTPSFSVSPDKQFFHCFGCGAG----GNVISFLMKYDKL 45 (55)
T ss_pred CCCCCEEEECCCCEEEEeCCCCC----CCHHHHHHHHHCc
Confidence 35677899877899999999633 4677889988775
No 226
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=29.30 E-value=94 Score=30.65 Aligned_cols=94 Identities=11% Similarity=0.226 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 242 KTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEE----MKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQ 317 (639)
Q Consensus 242 KTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~e----lE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~ 317 (639)
++..|++.--..-.+.++.+|.+.+..-...++. ++........+|.++.++-.+-|..-.+...+++.....-++
T Consensus 23 ~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq 102 (155)
T PF07464_consen 23 QNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQ 102 (155)
T ss_dssp --SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3334444333333444444444444333333332 444555556666666655444455555555666666666777
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 006597 318 RIFTDHEKLKLQLESQKK 335 (639)
Q Consensus 318 ~i~~e~ekl~~eLe~k~~ 335 (639)
.++.+-+++-.+|...+.
T Consensus 103 ~l~~E~qk~~k~v~~~~~ 120 (155)
T PF07464_consen 103 SLVQESQKLAKEVSENSE 120 (155)
T ss_dssp HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776665543
No 227
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.26 E-value=1.4e+02 Score=31.97 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHhhhhhhhhhccC
Q 006597 392 DQKKQKEDLHNRIIQLEKQLDAKQA-LALEIERLKGSLNVMKHMG 435 (639)
Q Consensus 392 ~hkrEke~~~~kil~LekqL~~kQ~-LELEi~qLkG~L~VmKhm~ 435 (639)
+=+.|.++|..++.+|..++..... |+.|.++|+..|.......
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~~ 114 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSSD 114 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 3357888899999999777776655 9999999999999876543
No 228
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=29.12 E-value=95 Score=29.56 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=45.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSFE 192 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~fe 192 (639)
+.++.|-|++. ..+...|.+.|.. |.+. .++..+.. .-.+|++.|.|.+.-....-...+.
T Consensus 115 ~~~l~v~nL~~---------~~~~~~l~~~F~~--~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPY---------DVTEEDLRELFKK--FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCC---------CCCHHHHHHHHHh--cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 78888999996 4567899999999 8876 55555553 4688999999998765544444444
No 229
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=29.08 E-value=1.2e+02 Score=23.00 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=34.7
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC-CCceeEEEeeCCChhchHhHH
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR-GHSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~-Gh~G~aVV~F~~dw~Gf~nA~ 189 (639)
+.|-|+|. ..+...+++.|+. |.+ ..+...+.+. .+.|++.|.|.+. ..-..|.
T Consensus 2 i~i~~l~~---------~~~~~~i~~~~~~--~g~i~~~~~~~~~~~~~~~~~~v~f~s~-~~a~~a~ 57 (74)
T cd00590 2 LFVGNLPP---------DVTEEDLRELFSK--FGKVESVRIVRDKDTKSKGFAFVEFEDE-EDAEKAL 57 (74)
T ss_pred EEEeCCCC---------ccCHHHHHHHHHh--cCCEEEEEEeeCCCCCcceEEEEEECCH-HHHHHHH
Confidence 45667764 4567899999998 643 3444444433 3588999999965 3444443
No 230
>TIGR00205 fliE flagellar hook-basal body complex protein FliE. fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction.
Probab=29.07 E-value=2.5e+02 Score=26.18 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=30.8
Q ss_pred HhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 270 DKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 270 nk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
...+.++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 70 ~~dlhevmia~~kA~lslq~~vqVRNKlveAYqE-IMrMQ 108 (108)
T TIGR00205 70 SVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQE-IMRMQ 108 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 3466667677788899999999999999999995 44443
No 231
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.91 E-value=5.9e+02 Score=25.29 Aligned_cols=19 Identities=16% Similarity=0.199 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006597 384 ENVRKLAEDQKKQKEDLHN 402 (639)
Q Consensus 384 e~vlkL~e~hkrEke~~~~ 402 (639)
.++.+.++.-|+++++.+-
T Consensus 113 ~~~~~~~~~~~~~~~~~~i 131 (155)
T PRK06569 113 EDINLAAKQFRTNKSEAII 131 (155)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3455666666666665443
No 232
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=28.75 E-value=1e+03 Score=28.02 Aligned_cols=141 Identities=16% Similarity=0.263 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHH---HHHHH-HHHH---HHHHHHHHHHHHHHHHHHH
Q 006597 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEK---LMEEK-DRLL---QSYNEEIKKIQLSARDHFQ 317 (639)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r---~meEk-d~l~---~~yneEi~kmQ~~a~~~~~ 317 (639)
+..++|-.+--++++..+.++|+.+......|+.++.+. ++++. +++++ ..|. -.|.-=+..|.+..+...
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~- 329 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP- 329 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc-
Confidence 335567777889999999999999999999998888664 23332 22332 1111 122223444555555443
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch-------------HHHHHHHHHHHHHhhhhchHHHHHHHHHhhhH
Q 006597 318 RIFTDHEKLKLQLESQKKELELRGEELEKRETQNE-------------NDRKILAEEIEKNAMRNNSLQLASLVQQKADE 384 (639)
Q Consensus 318 ~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~-------------~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade 384 (639)
.-.++|+.+++-+-.+|++-..+.+.+-++-. +||.+|..|..+-..+. +
T Consensus 330 ---g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~--------------~ 392 (622)
T COG5185 330 ---GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQS--------------D 392 (622)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchH--------------H
Confidence 34466777777776666665555554444332 35555555554433333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006597 385 NVRKLAEDQKKQKEDLHNRI 404 (639)
Q Consensus 385 ~vlkL~e~hkrEke~~~~ki 404 (639)
.+.+-|-++++|-+..-+.+
T Consensus 393 ~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 393 KLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 34555666666555444433
No 233
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=28.23 E-value=26 Score=28.05 Aligned_cols=10 Identities=30% Similarity=1.022 Sum_probs=7.8
Q ss_pred eccCCCCCCc
Q 006597 42 TCPYCPKKRK 51 (639)
Q Consensus 42 ~CP~C~gkkK 51 (639)
.||||.+...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 6999987654
No 234
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=28.04 E-value=2.2e+02 Score=25.65 Aligned_cols=48 Identities=13% Similarity=0.382 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 006597 259 VSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIK 306 (639)
Q Consensus 259 v~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~ 306 (639)
.+.+..++..-|-.|..||.+..-....|+.+++.+.+.+..|.++..
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788888899999999999999999999988888888876643
No 235
>PTZ00491 major vault protein; Provisional
Probab=28.01 E-value=9.4e+02 Score=30.02 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=15.4
Q ss_pred HhHHHHHHHHHHHhhhhhhhhhc
Q 006597 411 LDAKQALALEIERLKGSLNVMKH 433 (639)
Q Consensus 411 L~~kQ~LELEi~qLkG~L~VmKh 433 (639)
|.++|.+|++-.+-+-.|+|.|.
T Consensus 757 ~~~~~~~e~~~~~~~~~le~~k~ 779 (850)
T PTZ00491 757 LRKRQELELEYEQAQNELEIAKA 779 (850)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566777777777777777665
No 236
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=27.95 E-value=1.8e+02 Score=26.54 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=44.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC-----CCCceeEEEeeCCChhchHhHHHHHHHhh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF-----RGHSGCAVVEFHKDWPGLHNAMSFEKAYE 196 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~-----~Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe 196 (639)
|+.|-|||. -.+-..|.+.+.. ..+....-+|-| ....|||.|-|.+ -..|.+|.+.|.
T Consensus 3 TvMirNIPn---------~~t~~~L~~~l~~--~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~----~~~~~~F~~~f~ 66 (97)
T PF04059_consen 3 TVMIRNIPN---------KYTQEMLIQILDE--HFKGKYDFFYLPIDFKNKCNLGYAFVNFTS----PQAAIRFYKAFN 66 (97)
T ss_pred eEEEecCCC---------CCCHHHHHHHHHH--hccCcceEEEeeeeccCCCceEEEEEEcCC----HHHHHHHHHHHc
Confidence 678999997 3466778887776 456666666633 3568999999976 467889999998
No 237
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.87 E-value=2.3e+02 Score=23.97 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=33.5
Q ss_pred HHHHHHhHHHHHHHHHHHhhhhhhhhhc-cCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 006597 406 QLEKQLDAKQALALEIERLKGSLNVMKH-MGDDGDIEVLQKMETVLKDLREKEGELDD 462 (639)
Q Consensus 406 ~LekqL~~kQ~LELEi~qLkG~L~VmKh-m~~~~d~~~~~ki~~l~~~L~ek~~el~~ 462 (639)
-|+-++.+||.+.-|+...+........ +. +.-++..+|..++.....+|+.
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLq-----eaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQ-----EAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999988866554433 21 2334555566665555555543
No 238
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.77 E-value=6.9e+02 Score=25.72 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=8.6
Q ss_pred hhhhhccCCCcceeeeec
Q 006597 204 DWYASNQEKSGLYAWVAR 221 (639)
Q Consensus 204 dW~~~~~~~~~LYGWvAr 221 (639)
+|...+..+ +-=|||+.
T Consensus 66 ~w~~Vr~~~-G~~GWV~~ 82 (206)
T PRK10884 66 NYAQIRDSK-GRTAWIPL 82 (206)
T ss_pred CEEEEEeCC-CCEEeEEH
Confidence 465544322 23499854
No 239
>PLN02678 seryl-tRNA synthetase
Probab=27.75 E-value=3.7e+02 Score=30.88 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-cCccccc--------ceecC
Q 006597 437 DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRMG 507 (639)
Q Consensus 437 ~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~~~-~~~~~Ig--------iKrmG 507 (639)
++-++++.++.+|.+++...+.++ +++++...++...|..+ ....+|| |++.|
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~------------------~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g 132 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEV------------------QEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWG 132 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEc
Confidence 444566777777777777666665 45556666666777766 3333333 67777
Q ss_pred C
Q 006597 508 E 508 (639)
Q Consensus 508 e 508 (639)
.
T Consensus 133 ~ 133 (448)
T PLN02678 133 E 133 (448)
T ss_pred C
Confidence 4
No 240
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.58 E-value=5.6e+02 Score=24.62 Aligned_cols=95 Identities=15% Similarity=0.283 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006597 243 TISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTD 322 (639)
Q Consensus 243 Ti~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e 322 (639)
|+||++---.|-...-++.+..+++.-..-|......+...-..|..-+++-..+.+...+|+-.++.... ++...++.
T Consensus 29 s~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~-~i~~dv~~ 107 (126)
T PF07889_consen 29 SFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVS-QIGDDVDS 107 (126)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence 67888766666666666666666666665555555555555555666666666677777777765554332 22333333
Q ss_pred hHHHHHHHHHHHHHHH
Q 006597 323 HEKLKLQLESQKKELE 338 (639)
Q Consensus 323 ~ekl~~eLe~k~~eL~ 338 (639)
-...=..|+.|+.+|+
T Consensus 108 v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 108 VQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333345555655554
No 241
>PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=27.46 E-value=2.7e+02 Score=25.67 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=30.0
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 272 ~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
.+-++=....+...+|+-+++=|.+++++|+| |..||
T Consensus 62 ~lhevmiA~~kA~lslq~~vqVRNK~veAYqE-ImrMq 98 (99)
T PRK01699 62 ETHDVLIQQKKAESQMKTAALVRDNLIENYKS-LINMQ 98 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 56666666778899999999999999999985 55554
No 242
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=27.19 E-value=2.6e+02 Score=33.29 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 006597 384 ENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMK 432 (639)
Q Consensus 384 e~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmK 432 (639)
-...+.+++++|=++-+.-.+.+||-. +|+|.-||++++-+.+-.|
T Consensus 75 ~s~~r~~~e~~RI~~sVs~EL~ele~k---rqel~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 75 YSIGRILREQKRILASVSLELTELEVK---RQELNSEIEEINTKIEELK 120 (907)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 345677899999999999888888753 6999999998876655433
No 243
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=27.14 E-value=92 Score=32.83 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=36.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC-C-CceeEEEeeCCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR-G-HSGCAVVEFHKD 181 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~-G-h~G~aVV~F~~d 181 (639)
.+.|-|+|. ..+..+|++.|+. |.|+ .|+.+.++. | +.||+.|.|.+.
T Consensus 5 ~l~V~nLp~---------~~~e~~l~~~F~~--~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQ---------TMTQEEIRSLFTS--IGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHc--cCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 466788886 4577899999999 8774 566665543 3 779999999764
No 244
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.07 E-value=1.1e+03 Score=27.90 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHHHHhcCCCCcccccccCCCCCc
Q 006597 147 LRDELIRRGFNPTRVHPLWNFRGHS 171 (639)
Q Consensus 147 L~d~f~~~GF~p~kv~~l~~~~Gh~ 171 (639)
..+.+.. +-|..+.+++.++|..
T Consensus 135 ~~~~i~~--ilp~~~~~~FfFDGE~ 157 (650)
T TIGR03185 135 WDEFINE--LLPLELADLFFFDGEK 157 (650)
T ss_pred HHHHHHH--hCCHhHHHHhcccHHH
Confidence 3444554 7788888888777654
No 245
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=27.05 E-value=6e+02 Score=24.81 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=27.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHhhhhchHHH
Q 006597 314 DHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQ---NENDRKILAEEIEKNAMRNNSLQL 374 (639)
Q Consensus 314 ~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~---~~~er~kl~~e~~kn~~~~~~l~l 374 (639)
..-..++.+++..+.+++.-..+|..=...|..+... --+++..|..+.++...+.+.|..
T Consensus 38 ~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 38 ENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555333333333323333222221 124566666666655555555544
No 246
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.97 E-value=1e+03 Score=27.52 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 006597 397 KEDLHNRIIQLEKQLDAKQ 415 (639)
Q Consensus 397 ke~~~~kil~LekqL~~kQ 415 (639)
-+++..+|-.||+-++...
T Consensus 380 l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 380 LAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554443
No 247
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=26.87 E-value=31 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=10.2
Q ss_pred eeccCCCCCCccccccHHHHhhh
Q 006597 41 FTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 41 ~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
|+||+|+=.. ....|..|-
T Consensus 1 y~C~~C~y~t----~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYST----SKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-EE----SHHHHHHHH
T ss_pred CCCCCCCCcC----CHHHHHHHH
Confidence 7899998221 234566663
No 248
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.85 E-value=3e+02 Score=22.97 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 006597 402 NRIIQLEKQLDAKQALALEIERLKGSLN 429 (639)
Q Consensus 402 ~kil~LekqL~~kQ~LELEi~qLkG~L~ 429 (639)
+.|.+|+++|. +++-+|+.+.++|.
T Consensus 4 ~E~~rL~Kel~---kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 4 AEIERLEKELE---KLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHc
Confidence 45667777775 78888999999987
No 249
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=3.6e+02 Score=28.30 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=24.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhch---HHHHHHHHHHHHHhh
Q 006597 315 HFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNE---NDRKILAEEIEKNAM 367 (639)
Q Consensus 315 ~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~---~er~kl~~e~~kn~~ 367 (639)
..-+||.+.++-|.+|+++ ..+=.+++.+.+ .+++|.+.|-+||=.
T Consensus 162 ~~mklfae~erkRk~~e~r-------~~~eRkr~re~eIeaeek~Kr~~E~qKnfE 210 (250)
T KOG1150|consen 162 QVMKLFAELERKRKELEAR-------ANEERKRQREEEIEAEEKRKREREWQKNFE 210 (250)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666555555555544 433333333332 356788888888743
No 250
>PRK01156 chromosome segregation protein; Provisional
Probab=26.54 E-value=1.2e+03 Score=28.34 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=13.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006597 314 DHFQRIFTDHEKLKLQLESQKKELELRGEEL 344 (639)
Q Consensus 314 ~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L 344 (639)
+|.+.++.....--.+|+...++|+.+-+.|
T Consensus 465 e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l 495 (895)
T PRK01156 465 EKSNHIINHYNEKKSRLEEKIREIEIEVKDI 495 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 251
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=26.49 E-value=22 Score=43.46 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHH
Q 006597 413 AKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKE 487 (639)
Q Consensus 413 ~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~ 487 (639)
+|.+|.-.+..+...|+..+.--+ .+.+.-..|..++.|-.-+|+...+.+..|-.|-|+-.-.|.+.+..
T Consensus 322 aKKkL~~~L~el~e~le~~~~~~~----~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~ 392 (859)
T PF01576_consen 322 AKKKLERKLQELQEQLEEANAKVS----SLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAK 392 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444444444433211 22233334555555555555555555556665555555555555443
No 252
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=26.46 E-value=7.3e+02 Score=25.61 Aligned_cols=135 Identities=20% Similarity=0.300 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHH
Q 006597 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQ 373 (639)
Q Consensus 294 kd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~ 373 (639)
...|...+.+.+..|+.... ....-...++......|..+|..|...-.. ++..+....+.+...-.. .
T Consensus 61 ~~~lq~~~e~~i~~~~~~v~-------~~~~~~~~~~~~~l~~L~~ri~~L~~~i~e---e~~~r~~~ie~~~~~l~~-~ 129 (247)
T PF06705_consen 61 NKKLQSKFEEQINNMQERVE-------NQISEKQEQLQSRLDSLNDRIEALEEEIQE---EKEERPQDIEELNQELVR-E 129 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHH-H
Confidence 34555555555555554332 223334556667777788877777654443 333333333322111000 1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-HHHHHHHHHHHhhhhhhhhhccCCCCchHHHH
Q 006597 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQL----D-AKQALALEIERLKGSLNVMKHMGDDGDIEVLQ 444 (639)
Q Consensus 374 lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL----~-~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ 444 (639)
+..+...-..|..-+.-.+ ..++.++-.+...+ + ++..-|..+..|+.-|+=+++....+|..++.
T Consensus 130 l~~l~~~~~~Er~~R~erE-----~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~ 200 (247)
T PF06705_consen 130 LNELQEAFENERNEREERE-----ENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQN 200 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 2222221112221111111 22344444433333 3 23445777788888888777766555656555
No 253
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.38 E-value=8.6e+02 Score=26.41 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=5.2
Q ss_pred CCCcccEEE--EeCCc
Q 006597 545 PDWHPFKVI--TAEGK 558 (639)
Q Consensus 545 p~WhPFk~v--~v~g~ 558 (639)
+-=-||++. +++|.
T Consensus 263 ~~~lPy~i~~~~I~~~ 278 (314)
T PF04111_consen 263 SFELPYKIDKDKIGGV 278 (314)
T ss_dssp ----SS-ECTTEECTC
T ss_pred ccccceeccCCccCCe
Confidence 345688874 44444
No 254
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.26 E-value=7.4e+02 Score=25.60 Aligned_cols=72 Identities=24% Similarity=0.282 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHH
Q 006597 304 EIKKIQLSARDHFQRIFTDHEKLKL---QLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLAS 376 (639)
Q Consensus 304 Ei~kmQ~~a~~~~~~i~~e~ekl~~---eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~ 376 (639)
.++..|+. -.-..-+-++++.|+. .|++..+-|-..++++++=.-+-..+-..|.+|..+.-...+-|+..+
T Consensus 51 q~~s~Qqa-l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 51 QLKSLQQA-LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 34444433 2333444556666654 567777777777777776555555555555555555544444444333
No 255
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=26.02 E-value=6e+02 Score=25.82 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=6.0
Q ss_pred HHHHHHhhhhhhhhh
Q 006597 418 ALEIERLKGSLNVMK 432 (639)
Q Consensus 418 ELEi~qLkG~L~VmK 432 (639)
|..|.+|+.+.++|+
T Consensus 137 e~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 137 EMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 256
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=25.97 E-value=1.6e+03 Score=29.45 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=36.0
Q ss_pred HHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHH
Q 006597 267 EVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKK---IQLSARDHFQRIFTDHEKLKL 328 (639)
Q Consensus 267 ~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~k---mQ~~a~~~~~~i~~e~ekl~~ 328 (639)
...+..+..+-++..+....+...-.+.+...++|.+++.+ .+..|.+....|+.-+..|+.
T Consensus 888 ~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 888 EELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444467778888888877 577777777777766665554
No 257
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=5e+02 Score=26.32 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHhhcchH------HHHHHHHHHHHHhhccCcccccceecCC---CCChHHHHHHHh
Q 006597 460 LDDLEALNQTLIIRERKSNDE------LQDARKELINALKELSGRAHIGLKRMGE---LDNKPFLEVMNR 520 (639)
Q Consensus 460 l~~~e~lnq~Li~ker~sndE------Lq~ARk~lI~~l~~~~~~~~IgiKrmGe---ld~kpF~~ac~~ 520 (639)
|..+++|..+|..-.-.++.+ ++-.++.|++.|.. -||+.+|. .=.--||.|+..
T Consensus 93 LpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k------~Gv~~i~~~Ge~FDP~~HeAv~~ 156 (193)
T COG0576 93 LPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK------LGVEEIGPEGEKFDPNLHEAVQR 156 (193)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH------CCCEEeCCCCCCCCHHHhhheee
Confidence 566778888887655555544 67777777777764 55666654 222345666543
No 258
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=25.80 E-value=7.6e+02 Score=26.52 Aligned_cols=86 Identities=26% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006597 340 RGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALAL 419 (639)
Q Consensus 340 r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LEL 419 (639)
|.|--+.-+|+|..||+|-. |+.+|++-.| |+|+ +.|+++|-++-..+
T Consensus 72 RrKLKNRVAAQtaRDrKKaR--------------m~eme~~i~d-----L~ee---------n~~L~~en~~Lr~~---- 119 (292)
T KOG4005|consen 72 RRKLKNRVAAQTARDRKKAR--------------MEEMEYEIKD-----LTEE---------NEILQNENDSLRAI---- 119 (292)
T ss_pred HHHHHHHHHHhhhhhHHHHH--------------HHHHHHHHHH-----HHHH---------HHHHHHHHHHHHHH----
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006597 420 EIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRE 474 (639)
Q Consensus 420 Ei~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ke 474 (639)
...|-+-.| ++...|+.+.++|.+..+ .-..+++++-|
T Consensus 120 -----n~~L~~~n~-------el~~~le~~~~~l~~~~~-----~~~~~~~v~ee 157 (292)
T KOG4005|consen 120 -----NESLLAKNH-------ELDSELELLRQELAELKQ-----QQQHNTRVIEE 157 (292)
T ss_pred -----HHHHHhhhH-------HHHHHHHHHHHHHHhhHH-----HHHHhhHHHhh
No 259
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.77 E-value=2.9e+02 Score=29.30 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh-hccCCCCchHHHHHHHHHHHHH
Q 006597 390 AEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM-KHMGDDGDIEVLQKMETVLKDL 453 (639)
Q Consensus 390 ~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~Vm-Khm~~~~d~~~~~ki~~l~~~L 453 (639)
.++-..||+++++.+-+||-++.+-|.-=-+++-=+.+|+-| +.++ ++-.+++++.++|...+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~-~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP-GEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHhcccc
Confidence 344456899999999999988887765322222222333333 2333 34556666666666544
No 260
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.68 E-value=1.5e+03 Score=28.88 Aligned_cols=143 Identities=21% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc-hHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 006597 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET-SNSVEKLMEEK--------DRLLQSYNEEIKKIQLSARDH 315 (639)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~-s~sL~r~meEk--------d~l~~~yneEi~kmQ~~a~~~ 315 (639)
+|+..--..-.+++...|.+.+...-..-.++...+... ...|++++.+. ...++.-..||++.+...|..
T Consensus 1025 ~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1025 SDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHH
Q 006597 316 FQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKK 395 (639)
Q Consensus 316 ~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkr 395 (639)
--+. +-.-+=+.+.+..++||.+.-.+- -=.+|+.|. ++++-..-+|++.|..
T Consensus 1105 ~ik~-~~~~kdK~e~er~~rE~n~s~i~~------~V~e~krL~--------------------~~~~k~~e~L~k~~~~ 1157 (1189)
T KOG1265|consen 1105 DIKV-DKVIKDKAERERRKRELNSSNIKE------FVEERKRLA--------------------EKQSKRQEQLVKKHLE 1157 (1189)
T ss_pred hhhh-ccccccHHHHHHHHHHHHHHHHHH------HHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 006597 396 QKEDLHNRIIQLEKQLDAK 414 (639)
Q Consensus 396 Eke~~~~kil~LekqL~~k 414 (639)
--+.+...--+|++|+.++
T Consensus 1158 ~leql~e~~kal~~e~~~~ 1176 (1189)
T KOG1265|consen 1158 VLEQLAEEEKALDAEAEQE 1176 (1189)
T ss_pred HHHHHHHhhHHHHHHHHHH
No 261
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.56 E-value=1.1e+03 Score=27.46 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHH---HhhhHHHHHHHHH-----HHHHHHHHHHHHHHHhhhchHHHHHHH
Q 006597 305 IKKIQLSARDHFQRI---FTDHEKLKLQLES-----QKKELELRGEELEKRETQNENDRKILA 359 (639)
Q Consensus 305 i~kmQ~~a~~~~~~i---~~e~ekl~~eLe~-----k~~eL~~r~~~L~k~~~~~~~er~kl~ 359 (639)
|++|.+.-+--.++| .+.+++|+++|+. .+..+..|.+++..--.+-+.|-.|..
T Consensus 347 IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil 409 (521)
T KOG1937|consen 347 IQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKIL 409 (521)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444444434344444 4889999999986 488999999999876655555555443
No 262
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.47 E-value=5.9e+02 Score=24.17 Aligned_cols=13 Identities=0% Similarity=-0.023 Sum_probs=7.4
Q ss_pred eeeeeccCCCCCC
Q 006597 216 YAWVARSDDYNLK 228 (639)
Q Consensus 216 YGWvAradDy~~~ 228 (639)
+||+.....+++.
T Consensus 14 ~G~~~~~~~~~~~ 26 (151)
T PF11559_consen 14 RGYPSDGLLFDSA 26 (151)
T ss_pred CCCCCCCccCccc
Confidence 5666655555544
No 263
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=25.46 E-value=1.5e+02 Score=26.21 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 006597 442 VLQKMETVLKDLREKEGELDDLEALNQTLIIR 473 (639)
Q Consensus 442 ~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~k 473 (639)
+.+.-.+|..+|.+|.+|++.+..+..+|--|
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~K 34 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGK 34 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999988543
No 264
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.28 E-value=9.4e+02 Score=26.48 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 006597 392 DQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (639)
Q Consensus 392 ~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~ 461 (639)
.|..|--.++..|..|++.+ +.+=.|.+.|...|...|-.. ..+..--.+|++|..|.-
T Consensus 231 rQQEEIt~LlsqivdlQ~r~---k~~~~EnEeL~q~L~~ske~Q--------~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRC---KQLAAENEELQQHLQASKESQ--------RQLQAELQELQDKYAECM 289 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 34555566778888887765 456788999999999887532 233333345555555543
No 265
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=25.23 E-value=7.7e+02 Score=25.45 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHH
Q 006597 420 EIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDL 453 (639)
Q Consensus 420 Ei~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L 453 (639)
||..|++-|.+...--.+.|-+|..-|......|
T Consensus 205 Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~l 238 (247)
T PF06705_consen 205 EIAALKNALALESQEREQSDDDIVQALNHYTKAL 238 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777788777777655555656655554444433
No 266
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=25.09 E-value=2.7e+02 Score=31.93 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006597 382 ADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQAL 417 (639)
Q Consensus 382 ade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~L 417 (639)
...++|+-+++-+++||+|++-..+.|++|.+.+.+
T Consensus 38 eh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 38 EHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888999999999999999999888763
No 267
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.75 E-value=8.3e+02 Score=25.63 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006597 296 RLLQSYNEEIKKIQLSARDHFQ 317 (639)
Q Consensus 296 ~l~~~yneEi~kmQ~~a~~~~~ 317 (639)
+.+..|..||..+.+-=..|++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~e 53 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVE 53 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 268
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=47 Score=36.55 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=20.9
Q ss_pred HhHhHHHHHHhhhCCCceEeecCCeeeccCCCCC
Q 006597 16 MLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKK 49 (639)
Q Consensus 16 i~~y~~k~Y~~Lk~g~~kVk~~~~~~~CP~C~gk 49 (639)
|-+..+++|+.-+=+ ++..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~------g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE------GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc------CcccccCchhccc
Confidence 557788888876544 5678999999744
No 269
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.46 E-value=7.9e+02 Score=25.76 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 006597 322 DHEKLKLQLESQKKELELRGEELEKRETQNE 352 (639)
Q Consensus 322 e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~ 352 (639)
++.++..+++--..+|++..++|++.+.+.+
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~ 182 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVD 182 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445544444433
No 270
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.41 E-value=8.4e+02 Score=25.60 Aligned_cols=166 Identities=25% Similarity=0.391 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHH
Q 006597 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQ 373 (639)
Q Consensus 294 kd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~ 373 (639)
...+...|..||..++ .-+..+..++-++..++++-..+++.-..+++.. -..|..++.+...-
T Consensus 45 ~~~~~~~ye~el~~lr----~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e----~~~~~~le~el~~l-------- 108 (312)
T PF00038_consen 45 VSRIKEMYEEELRELR----RQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE----LAERKDLEEELESL-------- 108 (312)
T ss_dssp -HHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--------
T ss_pred CcccccchhhHHHHhH----HhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh--------
Confidence 3556778888887554 4455555666666666666666555544444433 22233333332221
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHhhhhhhhhhccCCC----CchHHHHHHHH
Q 006597 374 LASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQ-ALALEIERLKGSLNVMKHMGDD----GDIEVLQKMET 448 (639)
Q Consensus 374 lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ-~LELEi~qLkG~L~VmKhm~~~----~d~~~~~ki~~ 448 (639)
-+-++......-.+.++|..|+.+|+-.. --+-||..|+.++. .+..-+ -.+++-..|.+
T Consensus 109 -------------rk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~--~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 109 -------------RKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ--SSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHH
T ss_pred -------------hhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc--cccceeecccccccchhhhhh
Confidence 13455555666677788888888888764 46778999999886 222222 22455555666
Q ss_pred HHHHHHHHHhhh-hhHHHHHHH----HHHHHhhcchHHHHHHHHHHH
Q 006597 449 VLKDLREKEGEL-DDLEALNQT----LIIRERKSNDELQDARKELIN 490 (639)
Q Consensus 449 l~~~L~ek~~el-~~~e~lnq~----Li~ker~sndELq~ARk~lI~ 490 (639)
+..+........ .++++..+. |...-..++.++..++.++..
T Consensus 174 iR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~ 220 (312)
T PF00038_consen 174 IRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKE 220 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHH
Confidence 655544333221 233333333 333444566777777777654
No 271
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.34 E-value=8.7e+02 Score=25.74 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 006597 251 EARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE----KDRLLQSY----NEEIKKIQLSARDHFQRIFTD 322 (639)
Q Consensus 251 ~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meE----kd~l~~~y----neEi~kmQ~~a~~~~~~i~~e 322 (639)
+...+++|+.. .+..-+......|....+...||..+..+ .++.|..| ++++... ...++...+-.+
T Consensus 47 eLk~qnkli~K---~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V--~tde~k~~~~~e 121 (230)
T PF03904_consen 47 ELKRQNKLIIK---YLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV--DTDELKNIAQNE 121 (230)
T ss_pred HHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHH
Confidence 33455554333 22333333333333344444455555544 23333333 3333333 222333334445
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006597 323 HEKLKLQLESQKKELEL 339 (639)
Q Consensus 323 ~ekl~~eLe~k~~eL~~ 339 (639)
.-+++.+++++.+|+..
T Consensus 122 i~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQ 138 (230)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666665443
No 272
>PF02049 FliE: Flagellar hook-basal body complex protein FliE; InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein []. All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella []. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined []. The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar []. Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis []. From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits []. FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway []. On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures [].; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum
Probab=24.31 E-value=2.5e+02 Score=25.14 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=29.8
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 271 KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 271 k~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
..+-++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 58 ~dl~~vmia~~kA~lslq~~vqVRnK~v~AYqE-ImrMq 95 (96)
T PF02049_consen 58 VDLHEVMIAMQKASLSLQLAVQVRNKAVEAYQE-IMRMQ 95 (96)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 455566666677889999999999999999995 55554
No 273
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.31 E-value=34 Score=24.96 Aligned_cols=14 Identities=21% Similarity=0.873 Sum_probs=10.6
Q ss_pred CCeeeccCCCCCCc
Q 006597 38 DEAFTCPYCPKKRK 51 (639)
Q Consensus 38 ~~~~~CP~C~gkkK 51 (639)
..+|+||.|..++.
T Consensus 15 ~~~~~CP~Cg~~~~ 28 (33)
T cd00350 15 EAPWVCPVCGAPKD 28 (33)
T ss_pred cCCCcCcCCCCcHH
Confidence 37899999975543
No 274
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.22 E-value=7.7e+02 Score=25.10 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLL---QSYNEEIKKIQLSARD 314 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~---~~yneEi~kmQ~~a~~ 314 (639)
+.+++.+.+-+..-++.+.+|+..+.+...+|..+|-....+. ..+...+.+.+..|..
T Consensus 16 n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~ 77 (219)
T TIGR02977 16 NALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL 77 (219)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666667788888888888888888888887765554 4445555555555543
No 275
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.12 E-value=1.4e+03 Score=28.07 Aligned_cols=148 Identities=19% Similarity=0.243 Sum_probs=87.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------h
Q 006597 280 FTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQN-------E 352 (639)
Q Consensus 280 ~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~-------~ 352 (639)
..+....|.+.+.-+..+.+.-..|+..+|+.-.......-..|+.--..|.++..+|+-.-+.|+-..+.- -
T Consensus 117 ae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q 196 (739)
T PF07111_consen 117 AEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQ 196 (739)
T ss_pred HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888888888888888888888888888888888888888876544444322111 1
Q ss_pred HHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 006597 353 NDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLA--E----DQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKG 426 (639)
Q Consensus 353 ~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~--e----~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG 426 (639)
.++.-|..+.-+ ...--..+.+.++|.+.-- =.++ + .-..|++.+++.+..|++.-+ .|-..++=|.=
T Consensus 197 ~e~d~L~~qLsk-~~~~le~q~tlv~~LR~Yv--Geq~p~~~~~~~we~Er~~L~~tVq~L~edR~---~L~~T~ELLqV 270 (739)
T PF07111_consen 197 READLLREQLSK-TQEELEAQVTLVEQLRKYV--GEQVPPEVHSQAWEPEREELLETVQHLQEDRD---ALQATAELLQV 270 (739)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH--hhhCCcccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 122222222222 1111122333344333221 0111 1 125899999999999997655 55556665665
Q ss_pred hhhhhhc
Q 006597 427 SLNVMKH 433 (639)
Q Consensus 427 ~L~VmKh 433 (639)
.++-+.|
T Consensus 271 RvqSLt~ 277 (739)
T PF07111_consen 271 RVQSLTD 277 (739)
T ss_pred HHHHHHH
Confidence 5555444
No 276
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.10 E-value=9.9e+02 Score=26.34 Aligned_cols=57 Identities=26% Similarity=0.366 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSA 312 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a 312 (639)
+..+..|..++...+..+.++-..|....-.+..+-.+...+....++|+.++-...
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~ 309 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSV 309 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888877777777777777777776655444
No 277
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=23.92 E-value=4.9e+02 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 272 ~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
.+.++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 71 ~lhevmia~~kA~lslq~~~qVRNKlv~AYqE-IMrMq 107 (108)
T PRK00253 71 SLNDVMIALQKASVSFQAGIQVRNKLVAAYQE-IMNMQ 107 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 55566666677889999999999999999995 55554
No 278
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.91 E-value=8e+02 Score=25.15 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006597 390 AEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (639)
Q Consensus 390 ~e~hkrEke~~~~kil~LekqL~~kQ~ 416 (639)
+++...+......++..++.++..++.
T Consensus 121 ~~~~~~~~~~~~~~l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 121 LEELQNELEERKQRLSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555554443
No 279
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.90 E-value=7.5e+02 Score=24.82 Aligned_cols=87 Identities=22% Similarity=0.347 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNE---EIKKIQLSARDHFQRIFTDHEKLKLQLES 332 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yne---Ei~kmQ~~a~~~~~~i~~e~ekl~~eLe~ 332 (639)
+.+|+.+.+-...-++++.+++..+.....++..+|-...++-..|.+ ++.+.+..|..- +-.+++.|-.+.=.
T Consensus 15 ~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A---l~~g~edLAr~al~ 91 (221)
T PF04012_consen 15 NELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA---LAAGREDLAREALQ 91 (221)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHH
Confidence 444555555556667777788888888888888888776666554444 344444444333 33445555544444
Q ss_pred HHHHHHHHHHHHH
Q 006597 333 QKKELELRGEELE 345 (639)
Q Consensus 333 k~~eL~~r~~~L~ 345 (639)
++..++.....|.
T Consensus 92 ~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 92 RKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 280
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.89 E-value=1.2e+03 Score=27.20 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhh-hhhccC
Q 006597 414 KQALALEIERLKGSLN-VMKHMG 435 (639)
Q Consensus 414 kQ~LELEi~qLkG~L~-VmKhm~ 435 (639)
.+..+..|+.|+.+|. +|=+|+
T Consensus 430 ~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHhHheehh
Confidence 3444555555555552 455544
No 281
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.83 E-value=5.3e+02 Score=29.58 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-cC--------cccccceecCCC
Q 006597 439 DIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SG--------RAHIGLKRMGEL 509 (639)
Q Consensus 439 d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~~~-~~--------~~~IgiKrmGel 509 (639)
.+.++..+..|.++|++.+..+ ++++.....++-.|..+ .. ..|+=|++-|+.
T Consensus 70 ~~~l~~e~~~l~~~l~~~e~~~------------------~~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~ 131 (429)
T COG0172 70 AEELIAEVKELKEKLKELEAAL------------------DELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEP 131 (429)
T ss_pred HHHHHHHHHHHHHHHHhccHHH------------------HHHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecC
Confidence 3667777788888777777665 34555555566677766 33 444558998987
Q ss_pred C
Q 006597 510 D 510 (639)
Q Consensus 510 d 510 (639)
.
T Consensus 132 ~ 132 (429)
T COG0172 132 P 132 (429)
T ss_pred c
Confidence 3
No 282
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=23.82 E-value=2.3e+02 Score=26.53 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=30.1
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ 309 (639)
Q Consensus 272 ~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ 309 (639)
.+.++=....+...+|+-+++=|+++.++|+| |.+||
T Consensus 72 dlhevmiA~~kA~lslq~~vqVRNKlVeAYqE-IMrMq 108 (109)
T PRK00790 72 DTREVVDAVMQAEQALQTAVAIRDKVVEAYLE-ILRMP 108 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 46667677778889999999999999999995 55554
No 283
>PF03804 DUF325: Viral domain of unknown function; InterPro: IPR003225 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.62 E-value=53 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.8
Q ss_pred cCcccccceecCCCCChHHHHHHHh
Q 006597 496 SGRAHIGLKRMGELDNKPFLEVMNR 520 (639)
Q Consensus 496 ~~~~~IgiKrmGeld~kpF~~ac~~ 520 (639)
+.-++--|.|.|-+|-.+|+.||+.
T Consensus 31 gkvt~~dV~RFgf~dRnalv~ACM~ 55 (71)
T PF03804_consen 31 GKVTHADVRRFGFLDRNALVSACMA 55 (71)
T ss_pred CCccHhHHHHhCCCcHHHHHHHHHh
Confidence 4466788999999999999999986
No 284
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.37 E-value=3e+02 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=30.0
Q ss_pred hhccCCCCc-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 006597 431 MKHMGDDGD-IEVLQKMETVLKDLREKEGELDDLEALNQTLII 472 (639)
Q Consensus 431 mKhm~~~~d-~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ 472 (639)
++|||+.+| .++.-.|.+++-++..-...++.++....-|+-
T Consensus 58 l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 58 LEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 458887555 566667788887777777777777777666654
No 285
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=22.92 E-value=3.6e+02 Score=29.48 Aligned_cols=30 Identities=37% Similarity=0.538 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIERL 424 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~qL 424 (639)
..+.++...|.+||+.|.+||+=||+-..+
T Consensus 45 ~~rK~~~~~~~~le~el~qkH~kEL~~~~~ 74 (302)
T KOG2606|consen 45 KKRKELTEDIAKLEKELSQKHKKELEKLKL 74 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 344567889999999999999999998887
No 286
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=22.90 E-value=51 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=15.2
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
...||.|.++ +....|..|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4679999866 6777777774
No 287
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=22.68 E-value=2e+02 Score=31.07 Aligned_cols=44 Identities=34% Similarity=0.290 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhH
Q 006597 370 NSLQLASLVQQKADENVRKLAEDQKKQK----EDLHNRIIQLEKQLDA 413 (639)
Q Consensus 370 ~~l~lA~~eQ~kade~vlkL~e~hkrEk----e~~~~kil~LekqL~~ 413 (639)
....-|+-.+.-|--.|++.+|+||-|. +.+.++|.+||++--.
T Consensus 234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~ 281 (290)
T PF07899_consen 234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKAD 281 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHH
Confidence 3444566666677778999999999654 4588899999998743
No 288
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=22.63 E-value=1.2e+02 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=18.6
Q ss_pred hhchHHHHHHHHH---HHHHHHHHHHH
Q 006597 281 TETSNSVEKLMEE---KDRLLQSYNEE 304 (639)
Q Consensus 281 ~e~s~sL~r~meE---kd~l~~~yneE 304 (639)
+.+|.|++++|+| |..+..+||++
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999988 68899999986
No 289
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=22.53 E-value=99 Score=36.35 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=45.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHHHHhh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYE 196 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe 196 (639)
-|-.||-|.|- .- ....|+-.|+.-|+...-+.|--...+-+|||.|.|-. ..+|..=-+.|.
T Consensus 117 k~rLIIRNLPf-~~--------k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~----~~dA~~Al~~~N 179 (678)
T KOG0127|consen 117 KWRLIIRNLPF-KC--------KKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKE----KKDAEKALEFFN 179 (678)
T ss_pred cceEEeecCCc-cc--------CcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEee----HHHHHHHHHhcc
Confidence 79999999995 11 23478999999888777777865566788999999975 344444334444
No 290
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.51 E-value=41 Score=36.18 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=17.0
Q ss_pred HHHHhhhcCCCCccccccccccc
Q 006597 589 LVEINEYNPSGRYITSELWNYKE 611 (639)
Q Consensus 589 l~E~neyN~sgry~v~eLWN~ke 611 (639)
|-+++.=|=+|||+||.||+.|-
T Consensus 110 lY~~~~p~Y~grfTVPVLWD~k~ 132 (319)
T KOG2903|consen 110 LYYIASPNYTGRFTVPVLWDLKT 132 (319)
T ss_pred HHhhcCCCCCceEEEEEEEcccc
Confidence 33445556679999999999763
No 291
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=22.34 E-value=1.5e+03 Score=27.91 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 241 LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKER---FTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQ 317 (639)
Q Consensus 241 LKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k---~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~ 317 (639)
-++|.+||..+..-....|+.|--.-+....-..+.|+. .-+.|.-|+....+....+.+|.+++.|--..||--.-
T Consensus 412 rr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy~~~~~~l~k~~~~a~gvld 491 (828)
T PF04094_consen 412 RRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQYEAHAEDLAKRVDDARGVLD 491 (828)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHhhhhhhh
Confidence 356777776665544444554433333333333333332 23456667777777788899999999887766654332
Q ss_pred HHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHhhhch
Q 006597 318 RIFTDHEKLKLQLE----SQKKELELRGEELEKRETQNE 352 (639)
Q Consensus 318 ~i~~e~ekl~~eLe----~k~~eL~~r~~~L~k~~~~~~ 352 (639)
... -++.--.+.+ ..+..|+.+.+.|+++...-+
T Consensus 492 aaa-arErrAsE~eas~r~R~~ALEara~ALeERAr~~e 529 (828)
T PF04094_consen 492 AAA-ARERRASEAEASLRAREEALEARAKALEERARAAE 529 (828)
T ss_pred hhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 1222333333 455568888888888775544
No 292
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=22.29 E-value=36 Score=31.58 Aligned_cols=16 Identities=25% Similarity=0.764 Sum_probs=12.0
Q ss_pred ecCCeeeccCCCCCCc
Q 006597 36 ISDEAFTCPYCPKKRK 51 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK 51 (639)
.-+-+|.||||---+.
T Consensus 19 ~ldt~FnClfcnHek~ 34 (109)
T KOG3214|consen 19 PLDTQFNCLFCNHEKS 34 (109)
T ss_pred chheeeccCccccccc
Confidence 3467999999985543
No 293
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=22.26 E-value=8.7e+02 Score=25.01 Aligned_cols=45 Identities=29% Similarity=0.300 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 006597 313 RDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKI 357 (639)
Q Consensus 313 ~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~k 357 (639)
.+-+.-.-.+-++|+.+||-.+...+...++..++......||.+
T Consensus 133 DD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k 177 (192)
T PF09727_consen 133 DDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTK 177 (192)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667888899999988888888888888877765555544
No 294
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.20 E-value=1.6e+02 Score=32.60 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 006597 397 KEDLHNRIIQLEKQL 411 (639)
Q Consensus 397 ke~~~~kil~LekqL 411 (639)
...+..++..||-..
T Consensus 174 i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 174 IKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 344555666666544
No 295
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=22.03 E-value=40 Score=26.98 Aligned_cols=14 Identities=21% Similarity=0.833 Sum_probs=7.9
Q ss_pred CCeeeccCCCCCCc
Q 006597 38 DEAFTCPYCPKKRK 51 (639)
Q Consensus 38 ~~~~~CP~C~gkkK 51 (639)
...|+||.|...|.
T Consensus 32 p~~w~CP~C~a~K~ 45 (47)
T PF00301_consen 32 PDDWVCPVCGAPKS 45 (47)
T ss_dssp -TT-B-TTTSSBGG
T ss_pred CCCCcCcCCCCccc
Confidence 34599999986543
No 296
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.92 E-value=1.3e+03 Score=26.75 Aligned_cols=88 Identities=24% Similarity=0.355 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHhhhhchHH--HHHHHHHhhhHHH
Q 006597 312 ARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRE---TQNENDRKILAEEIEKNAMRNNSLQ--LASLVQQKADENV 386 (639)
Q Consensus 312 a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~---~~~~~er~kl~~e~~kn~~~~~~l~--lA~~eQ~kade~v 386 (639)
|..|..........+...++.-+..++.-..+|.+-. +.+-.++.++-...+.+... ..+. .++
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~-~~~~~~~~~---------- 273 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE-EGFDSSTNS---------- 273 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc-cccccccch----------
Confidence 5556666666666666666666666666555555433 33333444443333331111 0000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 387 RKLAEDQKKQKEDLHNRIIQLEKQL 411 (639)
Q Consensus 387 lkL~e~hkrEke~~~~kil~LekqL 411 (639)
+. .+.=+.|.+-+...|..|+.|+
T Consensus 274 ~e-l~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 274 IE-LEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred hc-chhhHHHHHHHHHHHHHHHHHH
Confidence 01 1233456666667777777776
No 297
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=21.92 E-value=1.3e+02 Score=33.57 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=33.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCccccc-ccCC--CCCceeEEEeeCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHP-LWNF--RGHSGCAVVEFHK 180 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~-l~~~--~Gh~G~aVV~F~~ 180 (639)
.+.|-|+|. ..+...|++.|.. |.++.... +... .-+.|||.|+|.+
T Consensus 297 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~ 346 (509)
T TIGR01642 297 RIYIGNLPL---------YLGEDQIKELLES--FGDLKAFNLIKDIATGLSKGYAFCEYKD 346 (509)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEecCCCCCcCeEEEEEECC
Confidence 567788886 4577899999999 87755433 3332 2378999999965
No 298
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=21.68 E-value=4.7e+02 Score=28.21 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRE 474 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ke 474 (639)
+||+++.++..++-..-+..|-|-.+|++|++.|. .....+..++.. .+.......+++-...|--..
T Consensus 151 ~ekd~~i~~~~~~~e~d~rnq~l~~~i~~l~~~l~-----------~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~ 218 (264)
T PF07246_consen 151 EEKDQLIKEKTQERENDRRNQILSHEISNLTNELS-----------NLRNDIDKFQER-EDEKILHEELEARESGLRNES 218 (264)
T ss_pred HHHHHHHHHHhhchhhhhHHHHHHHHHHHhhhhHH-----------Hhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHH
Q ss_pred hhcchHHHHHHHHHHH
Q 006597 475 RKSNDELQDARKELIN 490 (639)
Q Consensus 475 r~sndELq~ARk~lI~ 490 (639)
+.-.+||++|....+.
T Consensus 219 ~~l~~el~~aK~~~~~ 234 (264)
T PF07246_consen 219 KWLEHELSDAKEDMIR 234 (264)
T ss_pred HHHHHHHHHHHHHHHH
No 299
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.55 E-value=1.6e+02 Score=32.54 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006597 440 IEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (639)
Q Consensus 440 ~~~~~ki~~l~~~L~ek~~el~~~e~lnq~L 470 (639)
..+..+|+++.+.+.+.++.++.++.-.+.+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 4566788888888877777776555544443
No 300
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=21.37 E-value=1.3e+02 Score=32.96 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC--CCCc-eeEEEeeCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF--RGHS-GCAVVEFHK 180 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~--~Gh~-G~aVV~F~~ 180 (639)
+..+.|-|++. ..+...|++.|+. |..+....+.-+ .|+. |++.|+|.+
T Consensus 193 ~~~lfV~nLp~---------~vtee~L~~~F~~--fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 193 DTNLYVTNLPR---------TITDDQLDTIFGK--YGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred cceeEEeCCCC---------cccHHHHHHHHHh--cCCEEEEEEeecCCCCccceEEEEEECC
No 301
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=21.33 E-value=5.4e+02 Score=26.32 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=36.0
Q ss_pred CcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006597 213 SGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEM 276 (639)
Q Consensus 213 ~~LYGWvAradDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~el 276 (639)
+.+|+-.|..|.+.-..++.+|+|--| +|.++...- .+.-....++...+.++...+..|
T Consensus 83 ~~~~~~qa~~d~~~l~e~L~eY~r~i~---svk~~f~~R-~~a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 83 EQLHGEQADTDFYILAELLKDYIGLIG---AIKDVFHER-VKVWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888999987654 444444331 233333444444455555544444
No 302
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.11 E-value=1.5e+03 Score=27.19 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHH
Q 006597 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEK------DRLLQSYNEEIKK---IQLSARDHFQRIFTDHEKLKL 328 (639)
Q Consensus 258 lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEk------d~l~~~yneEi~k---mQ~~a~~~~~~i~~e~ekl~~ 328 (639)
.-+.|.+-+.+-.-++.+|+.+.-...-.|.++=+|- -..+++-+.++++ .|..+-..+.++..|.++|..
T Consensus 267 ~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r 346 (581)
T KOG0995|consen 267 KKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKR 346 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544444444443331 1223344444444 345567778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006597 329 QLESQKKELELRGEELEKR 347 (639)
Q Consensus 329 eLe~k~~eL~~r~~~L~k~ 347 (639)
+|..-..++|.+.+++=++
T Consensus 347 ~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 347 ELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 8888777777777766543
No 303
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.80 E-value=1e+03 Score=25.26 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006597 325 KLKLQLESQKKELELRGEEL 344 (639)
Q Consensus 325 kl~~eLe~k~~eL~~r~~~L 344 (639)
.+...++.+.+.++.+.++|
T Consensus 229 ~~~~~le~~~~~~ee~~~~L 248 (297)
T PF02841_consen 229 EQEQMLEQQERSYEEHIKQL 248 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 304
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=20.67 E-value=1.5e+02 Score=32.75 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCC--ceeEEEeeCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGH--SGCAVVEFHK 180 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh--~G~aVV~F~~ 180 (639)
++.|.|+|. ..+...|++.|..-| ....|..+.+.... .|+|.|+|.+
T Consensus 91 ~l~V~nlp~---------~~~~~~l~~~F~~~G-~v~~v~i~~d~~~~~skg~afVeF~~ 140 (457)
T TIGR01622 91 TVFVLQLAL---------KARERDLYEFFSKVG-KVRDVQCIKDRNSRRSKGVAYVEFYD 140 (457)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEECC
No 305
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.46 E-value=1.1e+03 Score=27.54 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhH-----------------HHHHHHHHHHHhhcchHHHHHHHH
Q 006597 440 IEVLQKMETVLKDLREKEGELDDL-----------------EALNQTLIIRERKSNDELQDARKE 487 (639)
Q Consensus 440 ~~~~~ki~~l~~~L~ek~~el~~~-----------------e~lnq~Li~ker~sndELq~ARk~ 487 (639)
.-.++.++-+...|+.-+.+|++. |--.|-+-+|-..+.-+|+.|+..
T Consensus 305 e~~rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~ 369 (575)
T KOG4403|consen 305 ETSRKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEM 369 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334456778888888888887654 222333445555555566666553
No 306
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.36 E-value=9.4e+02 Score=24.67 Aligned_cols=58 Identities=12% Similarity=0.266 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 256 NLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSAR 313 (639)
Q Consensus 256 ~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~ 313 (639)
..|=..+..+...-...-++|.+.|...+.-|...+-++.+....-+.++..|..+.+
T Consensus 21 ~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~ 78 (206)
T PF14988_consen 21 EKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRR 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333444444455555556666666666666666666666666666666665554443
No 307
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.20 E-value=1.1e+03 Score=25.45 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=50.2
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQL 310 (639)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~ 310 (639)
+-.|-.++|.+- + ..+......+++.|..++...+..+.++...|...+-.+..+-.+...|...-.+|..+|..
T Consensus 193 l~~fr~~~~~~d-~----~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 193 LLKYQIKNKVFD-P----KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHhCCCcC-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666665542 1 22344566778888888888888888888777777777777666667776666666665543
No 308
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=20.13 E-value=1.1e+03 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.4
Q ss_pred cCCCcceeeeeccCCCC
Q 006597 210 QEKSGLYAWVARSDDYN 226 (639)
Q Consensus 210 ~~~~~LYGWvAradDy~ 226 (639)
+.++.+||++++-+|-.
T Consensus 138 ~~~G~~yG~ll~~~~ng 154 (289)
T COG4985 138 SRGGQLYGKLLRFDSNG 154 (289)
T ss_pred ccCcchhhheeeeccCC
Confidence 34789999999987743
No 309
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.06 E-value=6.5e+02 Score=24.20 Aligned_cols=50 Identities=36% Similarity=0.535 Sum_probs=37.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 006597 315 HFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKN 365 (639)
Q Consensus 315 ~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn 365 (639)
++..+++.+..|..+|..-.+-|+.-..++++.++..+.+-..|. ++++|
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~-~Le~~ 70 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQ-ELEKN 70 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456677777788888888888888888888888888777777775 33443
No 310
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=20.06 E-value=1.4e+02 Score=34.22 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=37.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWP 183 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~dw~ 183 (639)
.+.|.|++. ..+...|.+.|+. |.. ..++...+..| +.|++.|.|.+.-+
T Consensus 90 ~vfV~nLp~---------~~~~~~L~~~F~~--~G~i~~~~i~~~~~g~skg~afV~F~~~e~ 141 (562)
T TIGR01628 90 NIFVKNLDK---------SVDNKALFDTFSK--FGNILSCKVATDENGKSRGYGFVHFEKEES 141 (562)
T ss_pred ceEEcCCCc---------cCCHHHHHHHHHh--cCCcceeEeeecCCCCcccEEEEEECCHHH
Confidence 467888885 3467889999999 764 44555666666 78999999998654
No 311
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.03 E-value=5.3e+02 Score=28.44 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=0.0
Q ss_pred Ccchhhhhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc-------hHHHHHHHHHHHHHHHH
Q 006597 229 NIIGDHLRKIG-DLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET-------SNSVEKLMEEKDRLLQS 300 (639)
Q Consensus 229 ~~iG~~LrK~g-dLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~-------s~sL~r~meEkd~l~~~ 300 (639)
|-+|-||.|.- ++.-.=+-...-...-|.++++|-.+...-...+.++.++|+.. |..|+++|+|.+++-+.
T Consensus 244 ~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~Kqe 323 (384)
T KOG0972|consen 244 GNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQE 323 (384)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006597 301 YNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQ 333 (639)
Q Consensus 301 yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (639)
..+.=.+|-.-|- .++|=.-.-||+.++..+
T Consensus 324 mEe~G~~msDGap--lvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 324 MEEQGAKMSDGAP--LVKIKQAVSKLKEETQTM 354 (384)
T ss_pred HHHhcccccCCch--HHHHHHHHHHHHHHHHhh
Done!