Query 006597
Match_columns 639
No_of_seqs 163 out of 181
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 03:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 3.9E-65 1.3E-69 489.2 13.5 170 112-281 3-172 (172)
2 1i84_S Smooth muscle myosin he 95.2 0.062 2.1E-06 64.7 10.8 9 19-27 554-562 (1184)
3 2v71_A Nuclear distribution pr 94.9 3 0.0001 40.8 21.0 157 258-429 11-171 (189)
4 1i84_S Smooth muscle myosin he 94.5 0.13 4.3E-06 62.1 11.0 18 171-188 768-785 (1184)
5 2fxo_A Myosin heavy chain, car 92.0 4.9 0.00017 36.5 14.9 75 400-488 46-120 (129)
6 3oja_B Anopheles plasmodium-re 91.5 2.1 7.3E-05 46.6 14.1 55 303-357 505-559 (597)
7 3ghg_A Fibrinogen alpha chain; 88.7 3.2 0.00011 46.2 12.3 93 245-337 52-147 (562)
8 2dfs_A Myosin-5A; myosin-V, in 88.2 7.2 0.00025 46.9 16.0 15 327-341 923-937 (1080)
9 3vkg_A Dynein heavy chain, cyt 88.0 61 0.0021 43.5 25.3 25 323-347 1936-1960(3245)
10 2dfs_A Myosin-5A; myosin-V, in 88.0 18 0.00062 43.5 19.2 18 395-412 977-994 (1080)
11 1wez_A HnRNP H', FTP-3, hetero 87.1 0.34 1.2E-05 41.5 2.9 59 121-191 15-74 (102)
12 2cq3_A RNA-binding protein 9; 86.5 0.87 3E-05 38.1 5.1 50 121-181 15-65 (103)
13 2dgw_A Probable RNA-binding pr 86.3 0.92 3.2E-05 37.1 5.0 58 121-190 10-68 (91)
14 2fxo_A Myosin heavy chain, car 86.0 20 0.00067 32.5 17.1 89 271-364 27-115 (129)
15 2dnn_A RNA-binding protein 12; 85.7 0.66 2.3E-05 40.6 4.0 60 122-193 17-77 (109)
16 3vkg_A Dynein heavy chain, cyt 85.4 1.2E+02 0.004 41.0 27.7 46 442-487 2054-2102(3245)
17 2lxi_A RNA-binding protein 10; 85.4 1.3 4.4E-05 36.9 5.6 51 123-182 3-55 (91)
18 2err_A Ataxin-2-binding protei 84.3 1.1 3.8E-05 38.4 4.8 52 122-184 30-82 (109)
19 2lmi_A GRSF-1, G-rich sequence 83.7 1.3 4.3E-05 37.8 4.9 60 121-192 11-75 (107)
20 2dha_A FLJ20171 protein; RRM d 83.3 1.2 4.2E-05 39.8 4.8 58 121-190 23-86 (123)
21 2cqi_A Nucleolysin TIAR; RNA r 82.9 1.5 5E-05 36.7 4.9 50 121-181 15-65 (103)
22 2cpy_A RNA-binding protein 12; 82.7 1.1 3.9E-05 38.5 4.3 58 122-191 16-76 (114)
23 1x4a_A Splicing factor, argini 82.5 1.6 5.3E-05 37.0 4.9 51 121-182 22-72 (109)
24 2hgm_A HNRPF protein, heteroge 82.2 1.2 4.2E-05 40.1 4.4 57 122-190 43-102 (126)
25 2e5j_A Methenyltetrahydrofolat 82.0 1.6 5.5E-05 36.2 4.8 49 121-182 19-67 (97)
26 3d2w_A TAR DNA-binding protein 81.5 1.9 6.5E-05 35.8 5.0 48 121-182 11-59 (89)
27 3na7_A HP0958; flagellar bioge 80.8 47 0.0016 33.0 21.6 30 386-415 95-124 (256)
28 2hgn_A Heterogeneous nuclear r 80.6 1 3.5E-05 41.2 3.4 49 121-180 46-95 (139)
29 1deq_A Fibrinogen (alpha chain 80.0 33 0.0011 36.9 14.8 109 222-339 41-152 (390)
30 2db1_A Heterogeneous nuclear r 80.0 1.7 5.9E-05 37.8 4.5 59 121-191 17-80 (118)
31 1wg5_A Heterogeneous nuclear r 80.0 1.8 6E-05 36.7 4.4 57 122-190 16-75 (104)
32 2cpe_A RNA-binding protein EWS 79.4 2.7 9.3E-05 35.6 5.5 58 121-190 15-83 (113)
33 1wi8_A EIF-4B, eukaryotic tran 79.3 1.6 5.6E-05 36.6 3.9 60 121-192 15-77 (104)
34 1c1g_A Tropomyosin; contractIl 78.3 43 0.0015 31.1 33.5 41 446-486 218-258 (284)
35 4a8x_A RNA-binding protein wit 78.1 2 6.7E-05 34.5 4.0 52 121-183 4-59 (88)
36 2ywk_A Putative RNA-binding pr 78.0 2.8 9.6E-05 34.2 4.9 51 122-183 17-69 (95)
37 3lqv_A PRE-mRNA branch site pr 77.7 2.7 9.4E-05 35.7 5.0 50 122-182 9-58 (115)
38 3ghg_A Fibrinogen alpha chain; 77.6 25 0.00086 39.2 13.5 80 253-336 81-160 (562)
39 4f25_A Polyadenylate-binding p 77.6 1.8 6E-05 37.4 3.7 49 124-183 8-57 (115)
40 2dgp_A Bruno-like 4, RNA bindi 77.4 4.4 0.00015 33.8 6.1 57 121-189 13-72 (106)
41 3ulh_A THO complex subunit 4; 77.3 3.2 0.00011 34.8 5.2 50 121-181 29-80 (107)
42 2ek1_A RNA-binding protein 12; 77.2 2.2 7.4E-05 34.9 4.0 50 121-181 15-67 (95)
43 2la6_A RNA-binding protein FUS 76.5 5.4 0.00018 33.0 6.4 52 121-183 13-75 (99)
44 2dgv_A HnRNP M, heterogeneous 74.6 3.7 0.00013 33.3 4.7 49 122-181 9-58 (92)
45 1wel_A RNA-binding protein 12; 74.6 2.7 9.2E-05 36.6 4.1 57 122-190 26-85 (124)
46 2dng_A Eukaryotic translation 74.3 2.4 8.2E-05 35.4 3.6 58 121-190 15-74 (103)
47 2cph_A RNA binding motif prote 73.9 4.8 0.00016 33.5 5.4 50 122-182 16-69 (107)
48 3nmr_A Cugbp ELAV-like family 73.2 3.1 0.00011 36.9 4.3 50 122-182 96-147 (175)
49 2cqp_A RNA-binding protein 12; 73.1 3.2 0.00011 34.2 4.0 51 121-182 15-68 (98)
50 2e5h_A Zinc finger CCHC-type a 72.9 7.1 0.00024 31.7 6.1 49 122-181 17-68 (94)
51 2dnz_A Probable RNA-binding pr 72.6 5 0.00017 32.7 5.1 49 122-181 6-57 (95)
52 1rk8_A CG8781-PA, CG8781-PA pr 72.2 3.4 0.00012 37.8 4.4 57 121-189 72-131 (165)
53 2do4_A Squamous cell carcinoma 71.8 4.8 0.00016 33.3 4.8 51 121-182 17-69 (100)
54 2kt5_A RNA and export factor-b 71.7 5.6 0.00019 34.4 5.5 49 122-181 36-86 (124)
55 2dnh_A Bruno-like 5, RNA bindi 71.6 5 0.00017 33.4 5.0 51 121-182 15-67 (105)
56 1x5s_A Cold-inducible RNA-bind 71.4 4.8 0.00016 33.3 4.7 50 121-181 12-64 (102)
57 2hgl_A HNRPF protein, heteroge 71.2 3.4 0.00012 37.6 4.1 58 122-191 45-107 (136)
58 1s79_A Lupus LA protein; RRM, 71.2 5.6 0.00019 34.0 5.3 57 122-190 12-70 (103)
59 2x1f_A MRNA 3'-END-processing 71.1 6 0.00021 32.5 5.3 49 123-182 4-55 (96)
60 1x5t_A Splicing factor 3B subu 71.0 7.1 0.00024 31.8 5.7 49 122-181 6-58 (96)
61 1uaw_A Mouse-musashi-1; RNP-ty 70.4 5.1 0.00018 31.2 4.5 56 123-190 2-60 (77)
62 1iqt_A AUF1, heterogeneous nuc 70.1 4.4 0.00015 31.5 4.1 55 124-190 2-59 (75)
63 2jvr_A Nucleolar protein 3; RN 70.0 6.1 0.00021 34.6 5.3 49 121-180 28-76 (111)
64 2cq4_A RNA binding motif prote 69.4 9.6 0.00033 32.3 6.3 60 121-192 25-87 (114)
65 1x5u_A Splicing factor 3B subu 68.9 6.8 0.00023 32.6 5.2 50 121-181 15-67 (105)
66 2xs2_A Deleted in azoospermia- 68.9 4.8 0.00016 33.4 4.3 58 121-190 9-68 (102)
67 3bs9_A Nucleolysin TIA-1 isofo 68.9 5.6 0.00019 31.7 4.5 49 122-181 7-58 (87)
68 2cqb_A Peptidyl-prolyl CIS-tra 68.8 6.1 0.00021 32.7 4.9 50 122-182 13-65 (102)
69 3md1_A Nuclear and cytoplasmic 68.7 5.8 0.0002 31.4 4.5 50 122-182 2-54 (83)
70 2krb_A Eukaryotic translation 68.5 6.2 0.00021 31.4 4.7 55 123-182 3-58 (81)
71 2dnm_A SRP46 splicing factor; 68.5 6.3 0.00022 32.7 4.9 52 121-183 13-67 (103)
72 2v71_A Nuclear distribution pr 68.0 93 0.0032 30.3 19.6 116 325-457 42-157 (189)
73 1x4h_A RNA-binding protein 28; 67.9 7.6 0.00026 32.5 5.3 50 122-182 16-68 (111)
74 2rs2_A Musashi-1, RNA-binding 67.6 5.8 0.0002 33.8 4.6 58 121-190 25-85 (109)
75 2dnl_A Cytoplasmic polyadenyla 67.4 4.9 0.00017 34.4 4.1 49 123-182 10-63 (114)
76 1oo0_B CG8781-PA, drosophila Y 67.2 6.7 0.00023 33.0 4.9 50 122-182 27-79 (110)
77 2fc9_A NCL protein; structure 67.1 4.4 0.00015 33.6 3.6 48 121-181 15-63 (101)
78 3tnu_A Keratin, type I cytoske 66.8 74 0.0025 28.7 12.5 25 404-428 104-128 (131)
79 2cpf_A RNA binding motif prote 66.6 4.5 0.00015 33.3 3.6 49 122-181 6-60 (98)
80 2mss_A Protein (musashi1); RNA 66.3 9.8 0.00033 29.6 5.4 55 124-190 2-59 (75)
81 1wf0_A TDP-43, TAR DNA-binding 66.2 4.5 0.00015 32.7 3.5 47 123-182 7-53 (88)
82 1x4c_A Splicing factor, argini 66.2 6.1 0.00021 33.4 4.4 53 121-190 15-68 (108)
83 2dgs_A DAZ-associated protein 66.2 7.5 0.00026 32.0 4.9 56 123-190 12-70 (99)
84 2cqd_A RNA-binding region cont 66.1 8.4 0.00029 32.8 5.3 49 122-181 18-69 (116)
85 1p27_B RNA-binding protein 8A; 65.9 5.9 0.0002 33.0 4.2 50 122-182 24-76 (106)
86 2hvz_A Splicing factor, argini 65.7 7.4 0.00025 32.2 4.8 56 123-193 2-59 (101)
87 2do0_A HnRNP M, heterogeneous 65.6 7.1 0.00024 33.0 4.7 49 122-181 16-66 (114)
88 3beg_B Splicing factor, argini 65.1 9.1 0.00031 32.9 5.4 53 121-190 16-69 (115)
89 2d9p_A Polyadenylate-binding p 65.0 4.7 0.00016 33.5 3.4 50 121-181 15-65 (103)
90 2ku7_A MLL1 PHD3-CYP33 RRM chi 65.0 8.9 0.00031 33.3 5.4 51 121-182 63-116 (140)
91 2cqc_A Arginine/serine-rich sp 64.8 7.1 0.00024 31.7 4.4 50 122-182 16-68 (95)
92 2jwn_A Embryonic polyadenylate 64.7 7.9 0.00027 33.2 4.9 59 121-191 36-97 (124)
93 2jrs_A RNA-binding protein 39; 64.5 6.1 0.00021 33.7 4.1 51 121-182 26-79 (108)
94 2j76_E EIF-4B, EIF4B, eukaryot 64.4 4.8 0.00016 33.6 3.4 59 121-191 19-80 (100)
95 3ucg_A Polyadenylate-binding p 64.0 9 0.00031 30.6 4.9 57 123-191 8-67 (89)
96 1whw_A Hypothetical protein ri 63.9 11 0.00037 30.9 5.5 50 122-182 9-61 (99)
97 2dgo_A Cytotoxic granule-assoc 63.0 7 0.00024 33.1 4.2 49 122-181 16-67 (115)
98 1x5o_A RNA binding motif, sing 62.9 15 0.00052 30.9 6.3 50 121-181 25-76 (114)
99 3s7r_A Heterogeneous nuclear r 62.6 9.5 0.00032 30.5 4.7 52 121-183 11-65 (87)
100 2dh8_A DAZ-associated protein 62.2 6.1 0.00021 32.9 3.6 58 122-191 17-77 (105)
101 1p1t_A Cleavage stimulation fa 62.1 7.4 0.00025 32.2 4.1 50 122-182 9-61 (104)
102 1why_A Hypothetical protein ri 61.9 9.8 0.00034 31.2 4.8 54 122-190 18-71 (97)
103 2lkz_A RNA-binding protein 5; 61.8 7.5 0.00026 32.9 4.1 50 123-183 11-65 (95)
104 1x4e_A RNA binding motif, sing 61.8 6 0.00021 31.6 3.4 57 122-190 6-65 (85)
105 1p7a_A BF3, BKLF, kruppel-like 61.8 4.4 0.00015 26.7 2.2 26 36-64 7-32 (37)
106 3p5t_L Cleavage and polyadenyl 61.6 7.1 0.00024 31.8 3.9 55 123-189 3-62 (90)
107 3sde_A Paraspeckle component 1 61.5 6.4 0.00022 38.5 4.2 53 122-185 97-151 (261)
108 2ki2_A SS-DNA binding protein 61.5 6.5 0.00022 31.8 3.6 49 123-182 3-54 (90)
109 3md3_A Nuclear and cytoplasmic 61.5 9.1 0.00031 33.4 4.8 49 123-182 2-52 (166)
110 2wbr_A GW182, gawky, LD47780P; 61.2 6.8 0.00023 33.9 3.8 42 126-181 12-53 (89)
111 1m1j_A Fibrinogen alpha subuni 60.8 1.7E+02 0.0058 32.3 15.1 109 217-335 35-146 (491)
112 2ghp_A U4/U6 snRNA-associated 60.7 8.4 0.00029 37.7 4.9 58 122-191 42-100 (292)
113 2hzc_A Splicing factor U2AF 65 60.6 8.1 0.00028 30.8 4.0 49 121-182 6-64 (87)
114 2elu_A Zinc finger protein 406 60.4 3 0.0001 30.1 1.1 29 29-65 3-31 (37)
115 2cq0_A Eukaryotic translation 60.1 5.2 0.00018 33.3 2.8 51 121-182 15-68 (103)
116 1fjc_A Nucleolin RBD2, protein 60.1 4.3 0.00015 33.2 2.3 48 122-182 17-64 (96)
117 4fxv_A ELAV-like protein 1; RN 59.9 12 0.0004 31.5 5.0 49 123-182 21-72 (99)
118 2cqg_A TDP-43, TAR DNA-binding 59.9 8.9 0.0003 31.8 4.2 56 122-189 16-74 (103)
119 3ex7_B RNA-binding protein 8A; 59.7 11 0.00039 32.3 5.0 51 121-182 22-75 (126)
120 3tnu_B Keratin, type II cytosk 59.6 99 0.0034 27.7 13.2 26 403-428 101-126 (129)
121 2dgx_A KIAA0430 protein; RRM d 59.6 8.6 0.00029 31.8 4.1 48 123-182 11-63 (96)
122 2div_A TRNA selenocysteine ass 59.5 13 0.00045 30.4 5.2 49 122-181 10-62 (99)
123 3mdf_A Peptidyl-prolyl CIS-tra 59.0 11 0.00036 29.9 4.4 50 122-182 8-60 (85)
124 2dnq_A RNA-binding protein 4B; 58.5 11 0.00036 30.6 4.4 44 122-181 9-52 (90)
125 1h2v_Z 20 kDa nuclear CAP bind 58.5 9.2 0.00032 34.3 4.4 51 121-182 39-92 (156)
126 3brv_B NF-kappa-B essential mo 58.2 48 0.0017 27.6 8.1 50 310-359 4-53 (70)
127 1x4b_A Heterogeneous nuclear r 58.1 10 0.00035 32.2 4.4 58 121-190 27-87 (116)
128 2i2y_A Fusion protein consists 58.1 11 0.00037 33.6 4.7 47 122-182 74-121 (150)
129 2fy1_A RNA-binding motif prote 58.1 14 0.00047 31.9 5.3 49 122-181 8-58 (116)
130 2khc_A Testis-specific RNP-typ 57.9 8.5 0.00029 32.7 3.9 51 122-183 41-94 (118)
131 1whx_A Hypothetical protein ri 57.9 12 0.00042 32.0 4.9 48 122-183 11-58 (111)
132 2cpd_A Apobec-1 stimulating pr 57.8 13 0.00043 30.7 4.8 46 122-181 16-61 (99)
133 3na7_A HP0958; flagellar bioge 57.5 1.5E+02 0.0052 29.3 23.5 17 349-365 86-102 (256)
134 3nmr_A Cugbp ELAV-like family 57.4 10 0.00035 33.5 4.5 50 123-183 5-59 (175)
135 1x4g_A Nucleolysin TIAR; struc 57.4 10 0.00035 31.9 4.2 46 122-182 26-72 (109)
136 2cjk_A Nuclear polyadenylated 57.3 16 0.00054 32.2 5.7 50 121-181 87-139 (167)
137 3qne_A Seryl-tRNA synthetase, 57.3 72 0.0025 35.2 11.9 56 437-510 71-135 (485)
138 2ghp_A U4/U6 snRNA-associated 57.2 12 0.00041 36.6 5.3 53 121-182 117-170 (292)
139 2fc8_A NCL protein; structure 57.2 6.5 0.00022 32.5 2.9 47 122-181 16-64 (102)
140 2ytc_A PRE-mRNA-splicing facto 57.1 12 0.00041 29.7 4.4 45 122-180 13-57 (85)
141 2m0f_A Zinc finger and BTB dom 57.0 5.2 0.00018 24.4 1.8 22 39-63 1-22 (29)
142 2f3j_A RNA and export factor b 56.4 14 0.00049 34.5 5.5 50 122-182 89-140 (177)
143 2la4_A Nuclear and cytoplasmic 56.4 13 0.00043 30.7 4.6 48 122-183 28-75 (101)
144 2dis_A Unnamed protein product 56.2 16 0.00054 30.5 5.2 48 123-181 10-62 (109)
145 3tyt_A Heterogeneous nuclear r 55.6 15 0.00052 34.9 5.6 62 123-196 125-189 (205)
146 2dit_A HIV TAT specific factor 55.4 6.6 0.00022 33.6 2.7 59 122-183 16-76 (112)
147 2kn4_A Immunoglobulin G-bindin 55.4 13 0.00045 33.1 4.9 50 121-181 70-122 (158)
148 1wf1_A RNA-binding protein RAL 55.1 9.2 0.00032 32.3 3.6 46 122-183 28-74 (110)
149 3o0z_A RHO-associated protein 54.9 1.5E+02 0.0052 28.4 18.4 17 396-412 119-135 (168)
150 2cpz_A CUG triplet repeat RNA- 54.7 13 0.00044 31.5 4.4 49 122-181 26-77 (115)
151 1nu4_A U1A RNA binding domain; 54.7 4.6 0.00016 33.0 1.5 50 122-182 9-62 (97)
152 2nlw_A Eukaryotic translation 54.7 13 0.00043 31.3 4.4 57 122-183 16-73 (105)
153 2kvh_A Zinc finger and BTB dom 54.6 6.4 0.00022 24.0 1.9 22 39-63 2-23 (27)
154 2g4b_A Splicing factor U2AF 65 54.2 16 0.00055 32.3 5.2 52 121-183 94-148 (172)
155 3ghg_C Fibrinogen gamma chain; 53.9 1.3E+02 0.0044 32.6 12.9 97 231-341 25-135 (411)
156 2elt_A Zinc finger protein 406 53.8 6.5 0.00022 25.6 1.9 24 37-63 6-29 (36)
157 1qm9_A Polypyrimidine tract-bi 53.7 15 0.0005 33.7 5.0 48 122-181 121-168 (198)
158 2voo_A Lupus LA protein; RNA-b 53.6 12 0.00043 35.4 4.6 50 122-182 110-161 (193)
159 2els_A Zinc finger protein 406 52.8 7.1 0.00024 25.6 2.0 25 37-64 6-30 (36)
160 4f02_A Polyadenylate-binding p 52.5 10 0.00036 35.7 3.8 49 123-182 105-154 (213)
161 2elr_A Zinc finger protein 406 52.4 7.7 0.00026 25.2 2.1 25 36-63 5-29 (36)
162 1b7f_A Protein (SXL-lethal pro 52.4 13 0.00045 32.7 4.3 55 123-189 5-62 (168)
163 3bas_A Myosin heavy chain, str 51.9 1.1E+02 0.0038 26.0 11.6 25 321-345 59-83 (89)
164 2elp_A Zinc finger protein 406 51.8 7.7 0.00026 25.6 2.1 25 36-63 5-30 (37)
165 2e44_A Insulin-like growth fac 51.8 17 0.00059 29.5 4.6 50 121-182 15-65 (96)
166 2yh0_A Splicing factor U2AF 65 51.7 16 0.00054 33.2 4.8 52 121-183 114-168 (198)
167 3v4m_A Splicing factor U2AF 65 51.7 7.3 0.00025 33.5 2.4 61 122-184 6-72 (105)
168 2dhg_A TRNA selenocysteine ass 51.6 20 0.00069 29.5 5.1 51 122-182 10-62 (104)
169 3md3_A Nuclear and cytoplasmic 51.6 15 0.00053 31.9 4.6 50 121-181 87-139 (166)
170 2cqh_A IGF-II mRNA-binding pro 51.1 12 0.00042 30.3 3.6 45 123-182 10-55 (93)
171 3s8s_A Histone-lysine N-methyl 51.0 16 0.00053 31.5 4.4 50 122-182 7-59 (110)
172 2m2b_A RNA-binding protein 10; 51.0 11 0.00037 33.1 3.5 58 123-192 25-87 (131)
173 1fje_B Nucleolin RBD12, protei 50.9 11 0.00039 33.6 3.6 48 121-181 99-146 (175)
174 2jvo_A Nucleolar protein 3; nu 50.4 14 0.00047 31.5 4.0 45 121-181 31-75 (108)
175 2cpj_A Non-POU domain-containi 50.3 14 0.00046 30.5 3.8 48 122-183 16-63 (99)
176 2m0d_A Zinc finger and BTB dom 50.0 8.6 0.0003 23.4 2.0 23 39-64 2-24 (30)
177 2dgt_A RNA-binding protein 30; 49.9 22 0.00075 28.8 5.0 44 121-180 10-53 (92)
178 2elx_A Zinc finger protein 406 49.8 8.5 0.00029 24.7 2.0 25 37-64 4-28 (35)
179 1l3k_A Heterogeneous nuclear r 49.2 18 0.00061 32.7 4.8 50 121-181 104-156 (196)
180 3ns6_A Eukaryotic translation 49.0 9.8 0.00034 31.8 2.7 55 123-182 8-65 (100)
181 2lea_A Serine/arginine-rich sp 48.8 14 0.00049 32.8 3.9 50 121-181 47-99 (135)
182 2cpx_A Hypothetical protein FL 48.2 9.7 0.00033 32.1 2.6 49 122-181 26-77 (115)
183 2elq_A Zinc finger protein 406 48.2 9 0.00031 25.1 1.9 25 37-64 6-30 (36)
184 1fxl_A Paraneoplastic encephal 48.0 19 0.00065 31.4 4.6 48 123-181 4-54 (167)
185 1srk_A Zinc finger protein ZFP 47.9 9.4 0.00032 24.7 2.0 25 37-64 4-28 (35)
186 2en2_A B-cell lymphoma 6 prote 47.4 9.8 0.00034 25.8 2.1 26 35-63 6-31 (42)
187 2kvf_A Zinc finger and BTB dom 47.3 9.8 0.00033 23.2 1.9 23 39-64 2-24 (28)
188 2kxn_B Transformer-2 protein h 47.2 16 0.00053 32.4 3.9 50 122-182 47-99 (129)
189 3egn_A RNA-binding protein 40; 47.0 17 0.00058 32.1 4.1 57 122-190 46-110 (143)
190 2dnp_A RNA-binding protein 14; 46.5 18 0.00061 29.2 3.9 44 122-181 10-53 (90)
191 1u6f_A Tcubp1, RNA-binding pro 46.1 14 0.00048 32.3 3.4 49 123-182 44-95 (139)
192 1ard_A Yeast transcription fac 46.0 11 0.00036 23.0 1.9 21 40-63 2-22 (29)
193 3pgw_S U1-70K; protein-RNA com 45.8 54 0.0018 35.2 8.5 56 122-189 103-161 (437)
194 1fj7_A Nucleolin RBD1, protein 45.0 9.6 0.00033 31.5 2.0 59 121-191 17-77 (101)
195 1b7f_A Protein (SXL-lethal pro 44.8 20 0.00069 31.4 4.3 50 121-181 89-141 (168)
196 1l3k_A Heterogeneous nuclear r 44.8 19 0.00065 32.5 4.2 57 122-190 14-73 (196)
197 2kvg_A Zinc finger and BTB dom 44.8 7.9 0.00027 23.8 1.2 22 39-63 2-23 (27)
198 2elv_A Zinc finger protein 406 44.7 12 0.00039 24.5 2.0 25 37-64 6-30 (36)
199 4dnd_A Syntaxin-10, SYN10; str 44.6 89 0.003 28.5 8.6 74 416-493 35-118 (130)
200 3n9u_C Cleavage and polyadenyl 44.5 23 0.0008 32.4 4.8 49 122-181 56-109 (156)
201 2e5g_A U6 snRNA-specific termi 44.3 28 0.00097 28.3 4.8 54 123-190 10-63 (94)
202 1m1j_C Fibrinogen gamma chain; 44.2 1.7E+02 0.0058 31.6 12.0 49 248-296 36-95 (409)
203 2dgu_A Heterogeneous nuclear r 44.1 18 0.00063 30.0 3.7 45 122-182 12-56 (103)
204 2eos_A B-cell lymphoma 6 prote 43.9 12 0.00041 25.4 2.1 27 35-64 6-32 (42)
205 2cjk_A Nuclear polyadenylated 43.7 24 0.00081 31.0 4.6 49 123-182 5-56 (167)
206 1rik_A E6APC1 peptide; E6-bind 43.7 12 0.00039 22.9 1.8 21 40-63 2-22 (29)
207 1wex_A Hypothetical protein (r 43.5 24 0.00083 30.2 4.4 45 122-180 16-60 (104)
208 1cii_A Colicin IA; bacteriocin 43.5 2.1E+02 0.0071 31.8 12.3 89 321-434 349-437 (602)
209 2m0e_A Zinc finger and BTB dom 43.4 11 0.00038 22.7 1.7 21 40-63 2-22 (29)
210 2dq0_A Seryl-tRNA synthetase; 43.4 1.2E+02 0.004 33.0 10.8 54 437-508 69-131 (455)
211 2xdj_A Uncharacterized protein 43.2 65 0.0022 27.5 6.9 44 404-461 22-65 (83)
212 2adc_A Polypyrimidine tract-bi 42.9 24 0.00083 33.5 4.8 48 122-181 152-199 (229)
213 2elo_A Zinc finger protein 406 42.8 9.1 0.00031 25.1 1.3 26 36-64 5-30 (37)
214 2xnq_A Nuclear polyadenylated 42.8 26 0.00088 29.1 4.4 45 123-182 24-68 (97)
215 2ocy_A RAB guanine nucleotide 42.7 2.2E+02 0.0076 26.9 18.9 72 346-433 72-143 (154)
216 3u59_A Tropomyosin beta chain; 42.7 1.6E+02 0.0056 25.3 10.2 73 394-470 15-91 (101)
217 1klr_A Zinc finger Y-chromosom 42.3 13 0.00044 22.6 1.9 22 40-64 2-23 (30)
218 2elm_A Zinc finger protein 406 42.0 12 0.00041 24.9 1.8 24 36-62 5-28 (37)
219 2ept_A Zinc finger protein 32; 42.0 13 0.00045 25.1 2.0 27 36-65 6-32 (41)
220 1paa_A Yeast transcription fac 41.7 13 0.00046 22.8 1.9 20 40-62 2-21 (30)
221 2epc_A Zinc finger protein 32; 41.6 13 0.00045 25.0 2.0 28 34-64 5-32 (42)
222 2cpi_A CCR4-NOT transcription 41.2 20 0.00068 30.4 3.5 51 121-182 15-74 (111)
223 1njq_A Superman protein; zinc- 40.9 14 0.00047 24.7 2.0 25 37-64 3-27 (39)
224 2ytb_A Zinc finger protein 32; 40.9 14 0.00049 24.8 2.1 26 36-64 7-32 (42)
225 3u1c_A Tropomyosin alpha-1 cha 40.3 1.8E+02 0.0062 25.1 10.2 72 395-470 16-91 (101)
226 1jmt_A Splicing factor U2AF 35 40.1 44 0.0015 28.4 5.5 36 147-184 43-81 (104)
227 2eou_A Zinc finger protein 473 40.0 15 0.00051 25.3 2.1 27 34-63 6-32 (44)
228 2yu5_A Zinc finger protein 473 39.8 14 0.00048 25.3 1.9 28 35-65 7-34 (44)
229 2em9_A Zinc finger protein 224 39.8 15 0.00051 25.4 2.1 28 34-64 6-33 (46)
230 3nmd_A CGMP dependent protein 39.6 68 0.0023 26.9 6.3 26 403-431 41-66 (72)
231 3pgw_A U1-A; protein-RNA compl 39.4 29 0.001 33.6 4.8 50 122-184 208-257 (282)
232 2emb_A Zinc finger protein 473 39.3 15 0.00052 25.2 2.0 28 34-64 6-33 (44)
233 1fxl_A Paraneoplastic encephal 39.3 33 0.0011 29.8 4.7 49 122-181 89-140 (167)
234 1sjq_A Polypyrimidine tract-bi 39.3 26 0.00089 30.6 4.0 46 121-181 16-62 (105)
235 2emi_A Zinc finger protein 484 39.0 15 0.00051 25.5 2.0 27 35-64 7-33 (46)
236 2el5_A Zinc finger protein 268 39.0 15 0.0005 24.9 1.9 26 36-64 6-31 (42)
237 2enf_A Zinc finger protein 347 38.9 16 0.00053 25.4 2.1 28 34-64 6-33 (46)
238 2eq1_A Zinc finger protein 347 38.8 16 0.00054 25.3 2.1 28 35-65 7-34 (46)
239 2yts_A Zinc finger protein 484 38.7 15 0.00052 25.3 2.0 28 34-64 6-33 (46)
240 2eof_A Zinc finger protein 268 38.6 15 0.00052 25.0 1.9 26 36-64 8-33 (44)
241 2kvi_A Nuclear polyadenylated 38.2 32 0.0011 28.2 4.2 43 123-180 12-54 (96)
242 3a7p_A Autophagy protein 16; c 38.2 2.5E+02 0.0084 26.6 10.6 63 388-471 68-130 (152)
243 2en9_A Zinc finger protein 28 38.1 16 0.00056 25.3 2.1 27 34-63 6-32 (46)
244 2enh_A Zinc finger protein 28 38.1 18 0.00063 25.0 2.4 28 34-64 6-33 (46)
245 2eow_A Zinc finger protein 347 38.0 16 0.00056 25.2 2.0 26 35-63 7-32 (46)
246 3oja_A Leucine-rich immune mol 37.8 3.9E+02 0.013 28.2 13.8 122 271-414 339-468 (487)
247 2ysp_A Zinc finger protein 224 37.8 13 0.00044 25.8 1.5 30 33-65 5-34 (46)
248 3s6e_A RNA-binding protein 39; 37.8 27 0.00091 30.7 3.8 88 123-227 9-97 (114)
249 2yte_A Zinc finger protein 473 37.7 17 0.00059 24.4 2.1 26 36-64 6-31 (42)
250 2ytf_A Zinc finger protein 268 37.7 16 0.00055 25.2 2.0 26 36-64 8-33 (46)
251 2elz_A Zinc finger protein 224 37.6 18 0.00061 25.1 2.2 29 33-64 5-33 (46)
252 1wg1_A KIAA1579 protein, homol 37.6 19 0.00065 29.1 2.7 44 123-181 7-50 (88)
253 2epv_A Zinc finger protein 268 37.5 16 0.00056 25.1 2.0 28 34-64 6-33 (44)
254 2en7_A Zinc finger protein 268 37.4 16 0.00055 24.8 1.9 26 36-64 8-33 (44)
255 2emg_A Zinc finger protein 484 37.2 19 0.00065 24.9 2.3 28 34-64 6-33 (46)
256 2ep3_A Zinc finger protein 484 37.1 16 0.00055 25.3 1.9 26 36-64 8-33 (46)
257 2drp_A Protein (tramtrack DNA- 37.0 20 0.00068 26.7 2.5 26 35-63 5-30 (66)
258 2ytp_A Zinc finger protein 484 36.5 18 0.0006 25.1 2.0 28 34-64 6-33 (46)
259 2epw_A Zinc finger protein 268 36.3 18 0.00062 24.9 2.1 27 35-64 7-33 (46)
260 3q2s_C Cleavage and polyadenyl 36.2 32 0.0011 33.4 4.6 57 122-190 69-130 (229)
261 2eon_A ZFP-95, zinc finger pro 36.2 18 0.0006 25.2 2.0 27 35-64 7-33 (46)
262 2en3_A ZFP-95, zinc finger pro 36.2 18 0.00062 25.0 2.1 25 36-63 8-32 (46)
263 2ely_A Zinc finger protein 224 36.1 19 0.00066 24.9 2.2 28 33-63 5-32 (46)
264 2em3_A Zinc finger protein 28 36.0 17 0.00059 25.1 1.9 26 35-63 7-32 (46)
265 2eom_A ZFP-95, zinc finger pro 36.0 19 0.00063 25.1 2.1 27 34-63 6-32 (46)
266 2yth_A Zinc finger protein 224 35.9 19 0.00066 24.9 2.2 27 35-64 7-33 (46)
267 2ytj_A Zinc finger protein 484 35.8 17 0.0006 25.1 1.9 26 36-64 8-33 (46)
268 2yrj_A Zinc finger protein 473 35.8 18 0.00063 24.9 2.0 28 34-64 6-33 (46)
269 2eme_A Zinc finger protein 473 35.6 18 0.00062 24.9 2.0 26 36-64 8-33 (46)
270 2cq1_A PTB-like protein L; RRM 35.5 26 0.0009 29.9 3.3 45 122-181 16-61 (101)
271 2qfj_A FBP-interacting repress 35.5 39 0.0013 30.9 4.8 48 122-180 126-176 (216)
272 2eop_A Zinc finger protein 268 35.5 19 0.00066 24.8 2.1 26 36-64 8-33 (46)
273 1x6e_A Zinc finger protein 24; 35.2 15 0.0005 28.2 1.5 27 34-63 8-34 (72)
274 2eoz_A Zinc finger protein 473 35.2 15 0.00052 25.5 1.5 27 34-63 6-32 (46)
275 2em8_A Zinc finger protein 224 35.2 21 0.0007 24.8 2.2 27 34-63 6-32 (46)
276 2qfj_A FBP-interacting repress 35.2 41 0.0014 30.8 4.9 50 121-181 28-80 (216)
277 2eov_A Zinc finger protein 484 35.1 21 0.0007 24.6 2.2 26 35-63 7-32 (46)
278 2bz2_A Negative elongation fac 35.1 45 0.0015 29.1 4.9 35 142-181 49-83 (121)
279 2yto_A Zinc finger protein 484 35.0 19 0.00066 24.9 2.0 26 35-63 7-32 (46)
280 2epx_A Zinc finger protein 28 35.0 21 0.0007 24.7 2.2 28 34-64 6-33 (47)
281 1znf_A 31ST zinc finger from X 34.9 19 0.00064 21.5 1.7 22 40-64 1-22 (27)
282 2em2_A Zinc finger protein 28 34.9 20 0.00067 24.9 2.1 26 35-63 7-32 (46)
283 3smz_A Protein raver-1, ribonu 34.9 30 0.001 33.5 4.1 51 121-182 184-237 (284)
284 2yti_A Zinc finger protein 347 34.8 17 0.00057 25.2 1.7 27 35-64 7-33 (46)
285 2em4_A Zinc finger protein 28 34.7 19 0.00065 25.0 2.0 27 34-63 6-32 (46)
286 2eoh_A Zinc finger protein 28 34.6 19 0.00067 24.9 2.0 27 35-64 7-33 (46)
287 2eoy_A Zinc finger protein 473 34.6 20 0.00068 24.8 2.1 28 34-64 6-33 (46)
288 2em6_A Zinc finger protein 224 34.4 21 0.0007 24.8 2.1 28 34-64 6-33 (46)
289 3uk3_C Zinc finger protein 217 34.1 18 0.0006 26.1 1.8 23 38-63 2-24 (57)
290 2eq2_A Zinc finger protein 347 34.1 18 0.00062 25.0 1.8 26 36-64 8-33 (46)
291 2ytn_A Zinc finger protein 347 33.7 21 0.00071 24.7 2.0 28 34-64 6-33 (46)
292 2ep1_A Zinc finger protein 484 33.7 20 0.00068 24.7 1.9 27 35-64 7-33 (46)
293 2em7_A Zinc finger protein 224 33.6 20 0.00068 24.8 1.9 27 35-64 7-33 (46)
294 2yu8_A Zinc finger protein 347 33.5 22 0.00074 24.6 2.1 27 34-63 6-32 (46)
295 2emh_A Zinc finger protein 484 33.4 20 0.0007 24.7 1.9 25 36-63 8-32 (46)
296 2epu_A Zinc finger protein 32; 33.3 16 0.00055 25.2 1.4 26 36-64 8-33 (45)
297 2eoq_A Zinc finger protein 224 33.3 20 0.0007 24.7 1.9 26 36-64 8-33 (46)
298 2eor_A Zinc finger protein 224 33.3 21 0.0007 24.6 1.9 26 35-63 7-32 (46)
299 3mq7_A Bone marrow stromal ant 33.2 1.5E+02 0.0052 26.9 7.9 79 395-473 18-107 (121)
300 2enc_A Zinc finger protein 224 33.2 21 0.00072 24.6 2.0 27 35-64 7-33 (46)
301 2ep2_A Zinc finger protein 484 33.1 20 0.0007 24.7 1.9 27 35-64 7-33 (46)
302 2yrm_A B-cell lymphoma 6 prote 33.1 22 0.00077 24.4 2.1 25 36-63 6-30 (43)
303 2epz_A Zinc finger protein 28 33.1 24 0.0008 24.4 2.2 28 34-64 6-33 (46)
304 2emz_A ZFP-95, zinc finger pro 33.0 21 0.00072 24.7 2.0 25 36-63 8-32 (46)
305 2eox_A Zinc finger protein 473 32.9 17 0.00057 24.9 1.4 28 34-64 6-33 (44)
306 2eq0_A Zinc finger protein 347 32.8 21 0.0007 24.7 1.9 26 36-64 8-33 (46)
307 2eoj_A Zinc finger protein 268 32.8 15 0.00053 25.0 1.2 26 36-64 8-33 (44)
308 2eq3_A Zinc finger protein 347 32.6 15 0.00053 25.3 1.2 26 36-64 8-33 (46)
309 2emj_A Zinc finger protein 28 32.6 23 0.0008 24.5 2.2 27 34-63 6-32 (46)
310 2el4_A Zinc finger protein 268 32.6 21 0.00073 24.5 1.9 26 36-64 8-33 (46)
311 2em5_A ZFP-95, zinc finger pro 32.4 22 0.00074 24.7 1.9 28 34-64 6-33 (46)
312 2yso_A ZFP-95, zinc finger pro 32.4 23 0.0008 24.4 2.1 27 34-63 6-32 (46)
313 3iuf_A Zinc finger protein UBI 32.3 20 0.00069 25.6 1.8 25 37-64 4-28 (48)
314 4gzn_C ZFP-57, zinc finger pro 32.3 22 0.00074 27.7 2.1 24 37-63 1-24 (60)
315 1wii_A Hypothetical UPF0222 pr 32.3 13 0.00043 32.0 0.8 14 36-49 19-32 (85)
316 2eoo_A ZFP-95, zinc finger pro 32.2 22 0.00075 24.6 2.0 25 36-63 8-32 (46)
317 2ene_A Zinc finger protein 347 32.2 22 0.00076 24.5 2.0 26 36-64 8-33 (46)
318 3hnw_A Uncharacterized protein 31.9 2.2E+02 0.0076 26.1 9.2 11 328-338 35-45 (138)
319 3ghg_B Fibrinogen beta chain; 31.9 2.2E+02 0.0075 31.3 10.5 71 231-311 82-152 (461)
320 2ytk_A Zinc finger protein 347 31.8 22 0.00074 24.6 1.9 26 35-63 7-32 (46)
321 2lcw_A RNA-binding protein FUS 38.0 9.8 0.00034 32.4 0.0 56 123-190 9-75 (116)
322 2ytm_A Zinc finger protein 28 31.6 22 0.00074 24.7 1.8 28 33-63 5-32 (46)
323 2emx_A Zinc finger protein 268 31.6 23 0.00077 24.2 1.9 25 36-63 6-30 (44)
324 2emy_A Zinc finger protein 268 31.6 25 0.00087 24.2 2.2 27 34-63 6-32 (46)
325 3pgw_A U1-A; protein-RNA compl 31.6 49 0.0017 32.0 5.0 49 123-182 11-63 (282)
326 3viq_B Mating-type switching p 31.5 72 0.0025 27.5 5.3 47 396-450 2-48 (85)
327 2eml_A Zinc finger protein 28 31.5 23 0.00077 24.5 1.9 27 35-64 7-33 (46)
328 2lvr_A Zinc finger and BTB dom 37.7 10 0.00034 23.3 0.0 22 39-63 2-23 (30)
329 2en8_A Zinc finger protein 224 31.5 24 0.00082 24.2 2.1 27 35-64 7-33 (46)
330 2ad9_A Polypyrimidine tract-bi 31.3 41 0.0014 29.9 4.0 46 122-182 32-78 (119)
331 2ytg_A ZFP-95, zinc finger pro 31.2 23 0.00079 24.4 1.9 27 35-64 7-33 (46)
332 2emf_A Zinc finger protein 484 31.2 22 0.00076 24.6 1.8 29 34-65 6-34 (46)
333 2emk_A Zinc finger protein 28 31.1 23 0.00079 24.5 1.9 26 35-63 7-32 (46)
334 2ytq_A Zinc finger protein 268 30.9 25 0.00084 24.4 2.0 29 34-65 6-34 (46)
335 2lw1_A ABC transporter ATP-bin 30.8 1.8E+02 0.0061 24.4 7.7 25 442-466 61-85 (89)
336 2emm_A ZFP-95, zinc finger pro 30.8 24 0.00081 24.3 1.9 26 35-63 7-32 (46)
337 2a3j_A U1 small nuclear ribonu 30.7 50 0.0017 29.3 4.5 48 123-181 31-82 (127)
338 2ep0_A Zinc finger protein 28 30.7 22 0.00077 24.5 1.8 26 36-64 8-33 (46)
339 2eq4_A Zinc finger protein 224 30.6 23 0.00078 24.4 1.8 28 34-64 6-33 (46)
340 3pq1_A Poly(A) RNA polymerase; 30.5 32 0.0011 37.7 3.8 37 142-182 64-100 (464)
341 1rim_A E6APC2 peptide; E6-bind 30.4 25 0.00085 22.8 1.9 22 40-64 2-23 (33)
342 2adr_A ADR1; transcription reg 30.4 24 0.00083 25.7 2.0 24 37-63 27-50 (60)
343 1bbo_A Human enhancer-binding 30.3 24 0.00081 25.3 1.9 27 36-65 25-51 (57)
344 2k48_A Nucleoprotein; viral pr 30.3 3E+02 0.01 24.6 9.6 61 343-416 43-103 (107)
345 2em0_A Zinc finger protein 224 30.3 27 0.00091 24.1 2.1 28 34-64 6-33 (46)
346 2lvu_A Zinc finger and BTB dom 36.4 11 0.00037 22.7 0.0 21 40-63 2-22 (26)
347 2ytt_A Zinc finger protein 473 29.7 23 0.00077 24.6 1.7 25 36-63 8-32 (46)
348 1yui_A GAGA-factor; complex (D 29.6 24 0.00082 25.6 1.8 25 36-63 20-44 (54)
349 3nmd_A CGMP dependent protein 29.4 1.2E+02 0.0043 25.3 6.2 45 446-490 21-65 (72)
350 2ytr_A Zinc finger protein 347 29.4 26 0.00089 24.1 1.9 28 34-64 6-33 (46)
351 3r27_A HnRNP L, heterogeneous 29.3 55 0.0019 28.3 4.4 45 123-182 23-68 (100)
352 2el6_A Zinc finger protein 268 29.2 26 0.00091 24.2 1.9 26 36-64 8-33 (46)
353 3hnw_A Uncharacterized protein 28.9 3.4E+02 0.012 24.9 14.4 22 391-412 113-134 (138)
354 2emp_A Zinc finger protein 347 28.9 27 0.00091 24.1 1.9 26 35-63 7-32 (46)
355 2lvt_A Zinc finger and BTB dom 34.8 12 0.00041 23.0 0.0 21 40-63 2-22 (29)
356 2ema_A Zinc finger protein 347 28.4 26 0.00089 24.1 1.8 25 36-63 8-32 (46)
357 1d0q_A DNA primase; zinc-bindi 27.9 39 0.0013 29.1 3.2 31 32-66 50-80 (103)
358 2d9o_A DNAJ (HSP40) homolog, s 27.6 46 0.0016 28.5 3.5 38 141-182 28-65 (100)
359 2en6_A Zinc finger protein 268 27.1 26 0.00088 24.2 1.6 27 34-63 6-32 (46)
360 2ytd_A Zinc finger protein 473 27.1 31 0.0011 23.7 2.0 26 35-63 7-32 (46)
361 2j8a_A Histone-lysine N-methyl 27.0 1.1E+02 0.0038 28.4 6.2 38 141-180 17-57 (136)
362 1f2i_G Fusion of N-terminal 17 26.9 30 0.001 26.2 2.1 10 38-47 47-56 (73)
363 2eoe_A Zinc finger protein 347 26.5 23 0.00078 24.4 1.2 28 34-64 6-33 (46)
364 2eln_A Zinc finger protein 406 25.7 34 0.0012 24.2 2.0 25 36-63 5-31 (38)
365 4f02_A Polyadenylate-binding p 25.7 67 0.0023 30.0 4.7 49 123-182 17-68 (213)
366 3mq9_A Bone marrow stromal ant 25.4 2.4E+02 0.0083 29.6 9.4 90 380-470 376-469 (471)
367 4f9d_A Poly-beta-1,6-N-acetyl- 25.4 23 0.00079 40.1 1.6 67 145-221 300-366 (618)
368 3smz_A Protein raver-1, ribonu 25.2 42 0.0014 32.5 3.2 39 583-621 237-275 (284)
369 2wvr_A Geminin; DNA replicatio 25.2 1.5E+02 0.0051 29.3 7.0 47 389-435 102-152 (209)
370 2en1_A Zinc finger protein 224 25.0 27 0.00093 24.0 1.4 27 35-64 7-33 (46)
371 2g4b_A Splicing factor U2AF 65 25.0 54 0.0018 28.8 3.6 58 123-191 6-70 (172)
372 3hhm_B NISH2 P85alpha; PI3KCA, 24.9 6.3E+02 0.022 26.6 15.6 19 395-413 240-258 (373)
373 2ct1_A Transcriptional repress 24.9 33 0.0011 26.4 1.9 28 33-63 8-35 (77)
374 4dci_A Uncharacterized protein 24.9 2E+02 0.0067 27.1 7.5 96 324-434 28-123 (150)
375 1ic2_A Tropomyosin alpha chain 24.8 2.5E+02 0.0085 23.2 7.5 13 400-412 4-16 (81)
376 3u1c_A Tropomyosin alpha-1 cha 24.7 2.7E+02 0.0092 24.1 8.0 65 423-491 6-70 (101)
377 1sjr_A Polypyrimidine tract-bi 24.7 59 0.002 30.7 4.0 49 124-184 49-97 (164)
378 1m1j_B Fibrinogen beta chain; 24.4 4.6E+02 0.016 28.7 11.5 65 245-313 95-159 (464)
379 2eps_A POZ-, at HOOK-, and zin 24.3 36 0.0012 24.6 2.0 25 36-63 8-32 (54)
380 1fv5_A First zinc finger of U- 24.2 27 0.00092 24.7 1.2 24 37-63 5-28 (36)
381 2eqb_B RAB guanine nucleotide 24.1 3.7E+02 0.013 23.6 12.1 82 328-415 15-96 (97)
382 2e72_A POGO transposable eleme 23.9 38 0.0013 26.4 2.0 22 37-62 9-31 (49)
383 2e7s_A RAB guanine nucleotide 23.7 4.4E+02 0.015 24.4 10.5 44 388-434 89-132 (135)
384 1x5w_A Zinc finger protein 64, 23.6 36 0.0012 25.7 1.9 25 37-64 6-30 (70)
385 3ol1_A Vimentin; structural ge 23.5 3.9E+02 0.013 23.7 11.7 33 402-434 69-105 (119)
386 1zfd_A SWI5; DNA binding motif 23.4 48 0.0016 20.6 2.3 23 39-64 2-26 (32)
387 3mjh_B Early endosome antigen 23.4 38 0.0013 24.5 1.8 20 40-62 5-24 (34)
388 1t6f_A Geminin; coiled-coil, c 23.2 1.5E+02 0.005 21.8 4.8 21 318-338 4-24 (37)
389 2lce_A B-cell lymphoma 6 prote 23.2 40 0.0014 25.7 2.1 25 36-63 13-37 (74)
390 2yrc_A Protein transport prote 23.1 32 0.0011 27.5 1.5 16 33-48 26-41 (59)
391 2epq_A POZ-, at HOOK-, and zin 23.0 26 0.00087 24.1 0.9 27 35-64 5-31 (45)
392 1x4f_A Matrin 3; structural ge 22.9 1.2E+02 0.0041 26.6 5.4 49 121-183 25-74 (112)
393 3lss_A Seryl-tRNA synthetase; 22.6 4E+02 0.014 29.3 10.6 30 480-509 129-168 (484)
394 2pe8_A Splicing factor 45; RRM 22.4 92 0.0031 26.5 4.5 85 123-227 10-98 (105)
395 2ke4_A CDC42-interacting prote 22.2 3.9E+02 0.013 23.2 9.2 42 395-436 15-56 (98)
396 2d9h_A Zinc finger protein 692 22.2 41 0.0014 25.8 2.0 23 37-62 4-26 (78)
397 2dmd_A Zinc finger protein 64, 22.1 38 0.0013 26.8 1.9 25 37-64 5-29 (96)
398 2lv2_A Insulinoma-associated p 22.1 37 0.0013 28.2 1.8 24 36-62 52-75 (85)
399 2epr_A POZ-, at HOOK-, and zin 22.0 34 0.0011 24.0 1.4 27 36-65 8-34 (48)
400 1m1j_B Fibrinogen beta chain; 21.5 8.3E+02 0.028 26.8 15.6 49 241-289 102-153 (464)
401 2cq2_A Hypothetical protein LO 21.4 73 0.0025 28.2 3.7 38 141-183 38-75 (114)
402 4b6x_A AVRRPS4, avirulence pro 21.4 70 0.0024 27.4 3.3 16 464-486 35-50 (90)
403 2kw0_A CCMH protein; oxidoredu 21.3 25 0.00085 30.6 0.6 13 39-51 22-34 (90)
404 2hl7_A Cytochrome C-type bioge 21.1 26 0.0009 30.0 0.7 13 39-51 25-37 (84)
405 2kmk_A Zinc finger protein GFI 20.7 46 0.0016 25.3 2.0 10 38-47 55-64 (82)
406 2p22_C Protein SRN2; endosome, 20.7 5.7E+02 0.02 24.6 11.5 69 272-346 80-149 (192)
407 2go8_A Hypothetical protein YQ 20.6 80 0.0027 28.4 3.8 101 121-226 11-116 (122)
408 1wlq_A Geminin; coiled-coil; 2 20.5 2.1E+02 0.0072 24.6 6.1 36 314-349 31-66 (83)
409 3u50_C Telomerase-associated p 20.5 32 0.0011 32.9 1.2 24 33-56 51-75 (172)
410 6rxn_A Rubredoxin; electron tr 20.4 30 0.001 26.4 0.8 12 39-50 29-40 (46)
411 1va1_A Transcription factor SP 20.3 52 0.0018 21.6 2.0 24 37-63 5-30 (37)
412 2yt9_A Zinc finger-containing 20.2 49 0.0017 26.1 2.1 25 37-64 4-28 (95)
413 1a1h_A QGSR zinc finger peptid 20.2 48 0.0016 25.8 2.1 23 38-63 60-82 (90)
414 2cot_A Zinc finger protein 435 20.2 46 0.0016 25.5 1.9 23 38-63 44-66 (77)
415 2dq3_A Seryl-tRNA synthetase; 20.1 2.5E+02 0.0085 30.0 8.2 55 437-509 68-131 (425)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-65 Score=489.15 Aligned_cols=170 Identities=65% Similarity=1.136 Sum_probs=162.1
Q ss_pred CCCCceeeecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHH
Q 006597 112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 112 ~~~de~iVWPwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
|+++++|||||||||+||||++.+||+++|+|+++|+++|+.+||+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus 3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 78899999999999999999666899999999999999997778999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006597 192 EKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDK 271 (639)
Q Consensus 192 ek~Fe~~~~GRkdW~~~~~~~~~LYGWvAradDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk 271 (639)
|+||+.+||||+||.+++..+++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||+
T Consensus 83 ek~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~ 162 (172)
T 4e8u_A 83 DKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKK 162 (172)
T ss_dssp HHHHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhh
Q 006597 272 HLEEMKERFT 281 (639)
Q Consensus 272 ~l~elE~k~~ 281 (639)
||++||++||
T Consensus 163 ~l~ele~k~~ 172 (172)
T 4e8u_A 163 DMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhhC
Confidence 9999999996
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.17 E-value=0.062 Score=64.70 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=5.2
Q ss_pred hHHHHHHhh
Q 006597 19 YEDKSYKKL 27 (639)
Q Consensus 19 y~~k~Y~~L 27 (639)
|-.+.|..+
T Consensus 554 ~~~kl~~~~ 562 (1184)
T 1i84_S 554 FVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555666555
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.94 E-value=3 Score=40.76 Aligned_cols=157 Identities=20% Similarity=0.232 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006597 258 LVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKEL 337 (639)
Q Consensus 258 lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL 337 (639)
-|+|.+.........+.+|+.-|++-..|=+.+-.|-+.-+.+...-.+.++... .+.-.+.+.++..++....+.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~----~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN----QRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888887766665555555444444443333333221 222223333333333332221
Q ss_pred HH----HHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006597 338 EL----RGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDA 413 (639)
Q Consensus 338 ~~----r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~ 413 (639)
.. -.++|..+...++.-+..+ -+-...|..|.- +.-.+-.-+++-..--..++-++.-||-.|+.
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~i----reLEq~NDdlEr-------~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLER-------AKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222222111111111 111111222221 11222333444444456677788889999999
Q ss_pred HHHHHHHHHHhhhhhh
Q 006597 414 KQALALEIERLKGSLN 429 (639)
Q Consensus 414 kQ~LELEi~qLkG~L~ 429 (639)
|+.|..++|+|+.-+.
T Consensus 156 Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 156 KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999886554
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.50 E-value=0.13 Score=62.08 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=8.5
Q ss_pred ceeEEEeeCCChhchHhH
Q 006597 171 SGCAVVEFHKDWPGLHNA 188 (639)
Q Consensus 171 ~G~aVV~F~~dw~Gf~nA 188 (639)
.|-+-|-|....-...+.
T Consensus 768 iG~TKVF~r~g~l~~LE~ 785 (1184)
T 1i84_S 768 IGQSKIFFRTGVLAHLEE 785 (1184)
T ss_dssp BCSSEEEECTTHHHHHHH
T ss_pred EcCeEEEEechHHHHHHH
Confidence 344455565544444443
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.04 E-value=4.9 Score=36.54 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Q 006597 400 LHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSND 479 (639)
Q Consensus 400 ~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~snd 479 (639)
+...+..|..||.+.+.+=.+++.....|.--| .+|...|.+-.+.+++.++.|..|...-|+.-+
T Consensus 46 l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k--------------~eLe~~l~el~~rleeeee~~~~L~~~kkkle~ 111 (129)
T 2fxo_A 46 LLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK--------------IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLED 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666556665555554222 255666666677777788888888888888888
Q ss_pred HHHHHHHHH
Q 006597 480 ELQDARKEL 488 (639)
Q Consensus 480 ELq~ARk~l 488 (639)
++++-++.|
T Consensus 112 e~~~Lk~~l 120 (129)
T 2fxo_A 112 ECSELKRDI 120 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777765
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.48 E-value=2.1 Score=46.65 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Q 006597 303 EEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKI 357 (639)
Q Consensus 303 eEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~k 357 (639)
+.+.+..+...+..+.+..+++.++.+.+.++.+++.=.++.++++...+..+++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 3344444444444444555555555555555555544444444444443333333
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.68 E-value=3.2 Score=46.18 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006597 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLME---EKDRLLQSYNEEIKKIQLSARDHFQRIFT 321 (639)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~me---Ekd~l~~~yneEi~kmQ~~a~~~~~~i~~ 321 (639)
..++.+..+.-.+.|+.|+++++.-++.-++.+.-|+.+...|+.-+. +++....+|.+|++..++.-++-++..+.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888899999999998888888888888777777755443 35666677777888777777777666665
Q ss_pred hhHHHHHHHHHHHHHH
Q 006597 322 DHEKLKLQLESQKKEL 337 (639)
Q Consensus 322 e~ekl~~eLe~k~~eL 337 (639)
....|+.-|+++..+|
T Consensus 132 nIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666665555533
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.15 E-value=7.2 Score=46.89 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006597 327 KLQLESQKKELELRG 341 (639)
Q Consensus 327 ~~eLe~k~~eL~~r~ 341 (639)
..+|+++..+|..|-
T Consensus 923 ~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI 937 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.01 E-value=61 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 323 HEKLKLQLESQKKELELRGEELEKR 347 (639)
Q Consensus 323 ~ekl~~eLe~k~~eL~~r~~~L~k~ 347 (639)
.+.++.+|..+..+|+...++-++.
T Consensus 1936 V~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1936 VKDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777666665543
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.96 E-value=18 Score=43.53 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006597 395 KQKEDLHNRIIQLEKQLD 412 (639)
Q Consensus 395 rEke~~~~kil~LekqL~ 412 (639)
.|++.+.+++..|+++++
T Consensus 977 ~e~~~~~~~v~~L~~e~~ 994 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIA 994 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555544443
No 11
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.09 E-value=0.34 Score=41.48 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=45.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhchHhHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~f 191 (639)
+.++.|-|+|. ..+..+|++.|+. |.+..|+.++++.| ++|+|.|+|.+.- .-..|+.+
T Consensus 15 ~~~l~V~nLp~---------~~te~~l~~~F~~--~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPY---------RATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCT---------TCCHHHHHHSSCS--CCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 46788899996 4467899999999 77889999888776 5799999998644 34555544
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.48 E-value=0.87 Score=38.10 Aligned_cols=50 Identities=30% Similarity=0.386 Sum_probs=39.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
|-++.|-|+|. ..+...|++.|+. |.+ ..+....+..++.|+|.|.|.+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 15 PKRLHVSNIPF---------RFRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHGGG--TSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 34566889986 4577889999999 865 46667777778999999999874
No 13
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.28 E-value=0.92 Score=37.08 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=43.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.++.|-|+|. ..+...|++.|+. |.+..++...+..| ++|+|.|.|.+ ...-..|+.
T Consensus 10 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~ 68 (91)
T 2dgw_A 10 CHTVKLRGAPF---------NVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK 68 (91)
T ss_dssp CCEEEEECCCS---------SCCHHHHHHHHTT--SCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH
T ss_pred ccEEEEECCCC---------CCCHHHHHHHHhh--CCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH
Confidence 45677899986 4567889999998 87778888877555 58999999975 444455554
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.96 E-value=20 Score=32.49 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=52.0
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006597 271 KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQ 350 (639)
Q Consensus 271 k~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~ 350 (639)
..+...+....+.......++.++-.|...-..|-. ....+..++..-.+.+.+|+.+.++|..|-.+.....+.
T Consensus 27 e~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~-----~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~ 101 (129)
T 2fxo_A 27 EALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-----NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444555555444433332221 122334455556667788889999998888888888888
Q ss_pred chHHHHHHHHHHHH
Q 006597 351 NENDRKILAEEIEK 364 (639)
Q Consensus 351 ~~~er~kl~~e~~k 364 (639)
-...+++|+.+...
T Consensus 102 L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 102 LTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888766544
No 15
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.65 E-value=0.66 Score=40.62 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=46.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCChhchHhHHHHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFEK 193 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~fek 193 (639)
.++.|-|+|. -.+...|++.|+. |.+..|+.++++.| .+|++.|.|.+. .....|+.++.
T Consensus 17 ~~v~V~nLp~---------~~te~dl~~~F~~--~~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~ 77 (109)
T 2dnn_A 17 LYVSVHGMPF---------SAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRNR 77 (109)
T ss_dssp HEEEEECCCS---------SCCHHHHHHHTTT--SCCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHhcc--CCeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCC
Confidence 5788999996 3467889999998 88888998888776 589999999874 34445554433
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.43 E-value=1.2e+02 Score=40.96 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHh--hcchHHHHHHHH
Q 006597 442 VLQKMETVLKDLREKEGELDDLEALNQTLII-RER--KSNDELQDARKE 487 (639)
Q Consensus 442 ~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~-ker--~sndELq~ARk~ 487 (639)
...+.+.|+.+++....-|+.-+.|-..|-- |+| .+-.+|+...+-
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 3445566666666666666666667666652 333 233455544443
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=85.39 E-value=1.3 Score=36.87 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=38.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC--CCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
+++|-|+|. ..+...|++.|+.-|..+..|+...++. .++|+|.|.|.+--
T Consensus 3 ~i~v~nLp~---------~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 3 IVMLRMLPQ---------AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp EEEEETCCS---------SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 577889986 4577899999999444467777777653 47799999997643
No 18
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.28 E-value=1.1 Score=38.38 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=39.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChhc
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWPG 184 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~dw~G 184 (639)
-++.|-|++. ..+...|++.|+. |.+ ..+....+..++.|+|.|.|.+.-.-
T Consensus 30 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 30 KRLHVSNIPF---------RFRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHGGG--TCCCSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred CEEEEECCCC---------cCCHHHHHHHHHh--cCCEEEEEEEECCCCCceEEEEEECCHHHH
Confidence 4466889886 4577889999999 765 46666667778899999999875543
No 19
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=83.70 E-value=1.3 Score=37.80 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=44.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC----cccccccCCCC-CceeEEEeeCCChhchHhHHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP----TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSFE 192 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p----~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~fe 192 (639)
+.++.|-|+|. ..+...|++.|+. |.+ ..|+.+.+..| ++|+|.|.|.+ ...-..|+.++
T Consensus 11 ~~~l~V~nLp~---------~~te~~l~~~F~~--~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~ 75 (107)
T 2lmi_A 11 VFLIRAQGLPW---------SCTMEDVLNFFSD--CRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEKH 75 (107)
T ss_dssp CCEEEEECCCS---------SCCSHHHHHHTTT--SCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTTT
T ss_pred ccEEEEeCCCC---------CCCHHHHHHHHHh--cCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHhC
Confidence 45677889986 3467889999998 655 66777777666 68999999975 55566666653
No 20
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.29 E-value=1.2 Score=39.83 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=43.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-----ccccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-----RVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-----kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.++.|-|+|. -.+...|++.|+. |.++ .|+.+++..| ++|++.|.|.+.- .-..|+.
T Consensus 23 ~~~v~V~nLp~---------~~te~dl~~~F~~--~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al~ 86 (123)
T 2dha_A 23 QVIVRMRGLPF---------TATAEEVVAFFGQ--HCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNALR 86 (123)
T ss_dssp CCEEEECSCCT---------TCCHHHHHHHHHT--TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHHT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--hCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 45788899986 3467899999999 8863 6777777666 5799999998744 3444554
No 21
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.92 E-value=1.5 Score=36.69 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=39.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
+-++.|-|+|. ..+...|++.|+. |.+ ..+....+..++.|+|.|.|.+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cqi_A 15 PRTLYVGNLSR---------DVTEVLILQLFSQ--IGPCKSCKMITEHTSNDPYCFVEFYEH 65 (103)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEEEECCCCSSCCEEEEEESSH
T ss_pred CCEEEEeCCCc---------cCCHHHHHHHHHh--cCCEeEEEEEecCCCCCCEEEEEECCH
Confidence 34677889986 4577899999999 766 45666667777899999999853
No 22
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.74 E-value=1.1 Score=38.52 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=41.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc--cccccCCCC-CceeEEEeeCCChhchHhHHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR--VHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k--v~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~f 191 (639)
-++.|-|+|. ..+...|++.|+. |.++. |+.++++.| ++|+|.|.|.+ -..-..|+..
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~ 76 (114)
T 2cpy_A 16 VCAHITNIPF---------SITKMDVLQFLEG--IPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL 76 (114)
T ss_dssp CEEEEESCCT---------TSCHHHHHHHTTT--SCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG
T ss_pred cEEEEeCcCC---------cCCHHHHHHHHHh--CCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 3466889986 3467889999999 76553 788887766 68999999975 3344445443
No 23
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.47 E-value=1.6 Score=37.01 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=38.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+. |.++....+.....+.|+|.|.|.+.-
T Consensus 22 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~i~~~~~~~g~afV~f~~~~ 72 (109)
T 1x4a_A 22 DCRIYVGNLPP---------DIRTKDIEDVFYK--YGAIRDIDLKNRRGGPPFAFVEFEDPR 72 (109)
T ss_dssp SSEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEECCSSSSSCCEEEEESCHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEECCHH
Confidence 35677899986 4577889999999 877655555445557899999997643
No 24
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=82.18 E-value=1.2 Score=40.14 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=43.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc--ccccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT--RVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~--kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.++.|-|+|. -.+...|++.|+. |.+. .|+.++++.| .+|++.|.|.+.-. ...|+.
T Consensus 43 ~~lfVgnLp~---------~~te~dL~~~F~~--~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~-A~~Al~ 102 (126)
T 2hgm_A 43 GFVRLRGLPF---------GCTKEEIVQFFSG--LEIVPNGITLPVDPEGKITGEAFVQFASQEL-AEKALG 102 (126)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHTTT--SCEEEEEEECCCCSSSSSCSEEEEEESSTTH-HHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhc--CCceeeEEEEEECCCCCCceEEEEEECCHHH-HHHHHH
Confidence 4567899996 4467899999998 8766 7888888777 58999999987543 344544
No 25
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.03 E-value=1.6 Score=36.22 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=38.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+. |.++.+...++ .+.|+|.|.|.+.-
T Consensus 19 ~~~l~V~nL~~---------~~t~~~l~~~F~~--~G~v~~~~~~~--~~~g~afV~f~~~~ 67 (97)
T 2e5j_A 19 AADVYVGNLPR---------DARVSDLKRALRE--LGSVPLRLTWQ--GPRRRAFLHYPDSA 67 (97)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHH--TTCCCSEEEEE--TTTTEEEEECSSHH
T ss_pred CCEEEEeCCCC---------cCcHHHHHHHHHh--cCCEEEEEEcC--CCCcEEEEEECCHH
Confidence 34677899986 4577899999999 88776666654 57899999998744
No 26
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=81.54 E-value=1.9 Score=35.76 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=36.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
|+++.|-|+|. ..+...|++.|+. |.+. .+.... .+.||+.|.|.+.-
T Consensus 11 ~~~l~V~~Lp~---------~~te~~L~~~F~~--~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTE---------DMTAEELQQFFCQ--YGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHhc--cCCEEEEEEee---CCCCEEEEEECCHH
Confidence 77888999986 4577899999999 8653 344333 37899999998744
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.75 E-value=47 Score=32.97 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006597 386 VRKLAEDQKKQKEDLHNRIIQLEKQLDAKQ 415 (639)
Q Consensus 386 vlkL~e~hkrEke~~~~kil~LekqL~~kQ 415 (639)
+.+-++..+++...+.+.|+++..++++.+
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666677777666665543
No 28
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=80.63 E-value=1 Score=41.20 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=40.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHK 180 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~ 180 (639)
+.++.|-|+|. ..+..+|++.|+. |.+..|+.++++.| ++|++.|+|.+
T Consensus 46 ~~~lfV~nLp~---------~~te~dL~~~F~~--~Gi~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 46 GHCVHMRGLPY---------KATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp CCCEECCSCCT---------TCCHHHHHHHHCS--CCCSEEECCCSSSSCSSCCCEEECSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEECCCCCCceEEEEEeCC
Confidence 35677889986 4567899999999 77889999988877 58999999975
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.04 E-value=33 Score=36.89 Aligned_cols=109 Identities=12% Similarity=0.157 Sum_probs=67.8
Q ss_pred cCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH---HHHHH
Q 006597 222 SDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE---KDRLL 298 (639)
Q Consensus 222 adDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meE---kd~l~ 298 (639)
.+|+...=|-|=-|+ .++.+..+.-...|..|++.|..-.+.-...-.-.+.++..|+....+ ++...
T Consensus 41 DeDwG~kCPsGCrLq---------g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~ 111 (390)
T 1deq_A 41 DEDWNTKCPSGCRMK---------GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTF 111 (390)
T ss_pred hhhccCCCCccchHH---------HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 556655444443333 345555566666666777766666666666655556666666665544 57777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006597 299 QSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELEL 339 (639)
Q Consensus 299 ~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (639)
.+|.++++.-+..-.+.+..-|.....|+.-|+.+..++..
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqR 152 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKR 152 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 88888888776666666666666666677776666654443
No 30
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=79.99 E-value=1.7 Score=37.82 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=44.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC----cccccccCCCC-CceeEEEeeCCChhchHhHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP----TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p----~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~f 191 (639)
+.++.|-|+|. ..+..+|++.|+. |.+ ..|+.+++..| ++|+|.|.|.+ -..-..|+.+
T Consensus 17 ~~~l~V~nLp~---------~~te~~l~~~F~~--~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 80 (118)
T 2db1_A 17 GYVVKLRGLPW---------SCSIEDVQNFLSD--CTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKK 80 (118)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHTTT--SCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGG
T ss_pred CcEEEEeCCCC---------CCCHHHHHHHHHH--cCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 35677899986 3467889999998 765 57777777776 58999999975 4555566654
No 31
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.96 E-value=1.8 Score=36.69 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=40.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc--cccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR--VHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k--v~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.++.|-|+|. ..+...|++.|+. |.++. ++..++..| ++|+|.|+|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~v~~~v~i~~~~~g~~~G~afV~F~~~-~~a~~A~~ 75 (104)
T 1wg5_A 16 GFVRLRGLPF---------GCSKEEIVQFFSG--LEIVPNGMTLPVDFQGRSTGEAFVQFASQ-EIAEKALK 75 (104)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--CCEEEEEEECCBCSSSCBCSEEEEEESSH-HHHHHHHT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCcceeEEEEECCCCCcceEEEEEECCH-HHHHHHHH
Confidence 5677899986 3467889999998 87654 566666555 579999999753 33344443
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.44 E-value=2.7 Score=35.62 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=40.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---------cccccCCC-C-CceeEEEeeCCChhchHhHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---------VHPLWNFR-G-HSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k---------v~~l~~~~-G-h~G~aVV~F~~dw~Gf~nA~ 189 (639)
+.++.|-|+|. ..+...|++.|+. |.++. ++..++.. | +.|+|.|.|.+.- .-..|+
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai 82 (113)
T 2cpe_A 15 NSAIYVQGLND---------SVTLDDLADFFKQ--CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAV 82 (113)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHTT--TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHH
T ss_pred CCEEEEcCCCC---------CCCHHHHHHHHHh--cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHH
Confidence 35677899986 4567899999999 88775 66666633 3 5799999998643 333344
Q ss_pred H
Q 006597 190 S 190 (639)
Q Consensus 190 ~ 190 (639)
.
T Consensus 83 ~ 83 (113)
T 2cpe_A 83 E 83 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.25 E-value=1.6 Score=36.57 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=43.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC---CCceeEEEeeCCChhchHhHHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR---GHSGCAVVEFHKDWPGLHNAMSFE 192 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~---Gh~G~aVV~F~~dw~Gf~nA~~fe 192 (639)
|.++.|-|+|. ..+...|++.|+. |.+..|....++. -+.|+|.|.|.+.- .-..|+.|+
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~-~a~~A~~l~ 77 (104)
T 1wi8_A 15 PYTAFLGNLPY---------DVTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFEDLD-SLLSALSLN 77 (104)
T ss_dssp CEEEEEESCCS---------SCCHHHHHHHTTT--SCEEEEECCBCSSCTTSBCSCEEEEESSHH-HHHHHHGGG
T ss_pred CCEEEEeCCCC---------cCCHHHHHHHHHH--CCceEEEEecCCCCCCCcCeEEEEEECCHH-HHHHHHhcC
Confidence 46788999986 3577889999999 6567777776653 36899999997543 344555443
No 34
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=78.35 E-value=43 Score=31.10 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHH
Q 006597 446 METVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARK 486 (639)
Q Consensus 446 i~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk 486 (639)
+..+...+......+..++.-...+...-...+.++..++.
T Consensus 218 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (284)
T 1c1g_A 218 EDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 258 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333333334443333
No 35
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=78.13 E-value=2 Score=34.48 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=37.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--C-CceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--G-HSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--G-h~G~aVV~F~~dw~ 183 (639)
|-++.|-|+|. ..+...|++.|+. |.+. .+....+.. | +.|+|.|.|.+.-.
T Consensus 4 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~ 59 (88)
T 4a8x_A 4 PTKVHIGRLTR---------NVTKDHIMEIFST--YGKIKMIDMPVERMHPHLSKGYAYVEFENPDE 59 (88)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCEETTEEEEECSEEEEEESSHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHH
Confidence 45677889986 4577899999999 8664 344444442 4 78999999987544
No 36
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=77.98 E-value=2.8 Score=34.23 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=38.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~G-h~G~aVV~F~~dw~ 183 (639)
.++.|-|+|. ..+...|++.|+. |.+. .+....++.| ++|+|.|.|.+.-.
T Consensus 17 ~~l~v~nlp~---------~~~~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 17 RTVFVGNLEA---------RVREEILYELFLQ--AGPLTKVTICKDREGKPKSFGFVCFKHPES 69 (95)
T ss_dssp GEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence 5677899986 4567889999999 7654 5555555555 47999999987654
No 37
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=77.65 E-value=2.7 Score=35.71 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.+.....+.......|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~g~afV~f~~~~ 58 (115)
T 3lqv_A 9 RILYIRNLPY---------KITAEEMYDIFGK--YGPIRQIRVGNTPETRGTAYVVYEDIF 58 (115)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEECSTTTTTCEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeCCCCCcEEEEEECCHH
Confidence 3567889986 4577889999999 876554444434455899999998643
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.59 E-value=25 Score=39.20 Aligned_cols=80 Identities=11% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 006597 253 RKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLES 332 (639)
Q Consensus 253 rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~ 332 (639)
....+.+..+.+++..+.....+++..|++.+.-|++..+..+.-++.--.-|+.+|..- +.+.-+.+||-..++.
T Consensus 81 Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL----edq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 81 KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV----RAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 466777778888887888888899999999999999988775444443335566665554 4455567899999999
Q ss_pred HHHH
Q 006597 333 QKKE 336 (639)
Q Consensus 333 k~~e 336 (639)
|++.
T Consensus 157 qirs 160 (562)
T 3ghg_A 157 KIRS 160 (562)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=77.57 E-value=1.8 Score=37.44 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=38.6
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChh
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
+.|-|+|. ..+...|++.|+. |.+ ..|+...+..++.||+.|.|.+.-.
T Consensus 8 lfV~nLp~---------~~te~~L~~~F~~--~G~v~~v~i~~d~~~~kg~afV~f~~~~~ 57 (115)
T 4f25_A 8 IFIKNLDK---------SIDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQEA 57 (115)
T ss_dssp EEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESCHHH
T ss_pred EEECCCCC---------CCCHHHHHHHHhc--cCCEEEEEEeecCCCCCceEEEEECCHHH
Confidence 56788886 4567899999999 876 4567777777889999999986443
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=77.42 E-value=4.4 Score=33.83 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=38.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhchHhHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw~Gf~nA~ 189 (639)
+-++.|-|+|. ..+...|++.|+. |.+ ..|....++. -+.|+|.|.|.+.-. -..|+
T Consensus 13 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~ 72 (106)
T 2dgp_A 13 AIKLFIGQIPR---------NLDEKDLKPLFEE--FGKIYELTVLKDRFTGMHKGCAFLTYCERES-ALKAQ 72 (106)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHHHH--HSCCCEEECCCCSSSCSCCSEEEEEESSHHH-HHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEecCCCCCcceEEEEEECCHHH-HHHHH
Confidence 34567889986 4567889999999 754 4555555433 367999999986433 23444
No 41
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=77.30 E-value=3.2 Score=34.77 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=38.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCC-ceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGH-SGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh-~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|.. |.++ .+....+..|. .|+|.|.|.+.
T Consensus 29 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 29 GGKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp SEEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 35677889986 4567889999999 8664 66666666664 79999999854
No 42
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=77.18 E-value=2.2 Score=34.92 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=36.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC-C-CCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF-R-GHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~~-~-Gh~G~aVV~F~~d 181 (639)
|.++.|-|+|. ..+...|++.|+. |.+.. +..+..+ . -++|++.|.|.+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 15 PTVIKVQNMPF---------TVSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp CEEEEEECCCT---------TCCHHHHHHHTTT--SCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 56788999996 4577889999998 77654 5554433 2 3679999999764
No 43
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=76.53 E-value=5.4 Score=32.99 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=38.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---------cccccCCC--CCceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---------VHPLWNFR--GHSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k---------v~~l~~~~--Gh~G~aVV~F~~dw~ 183 (639)
+.++.|-|+|. ..+...|++.|+. |.+.. +....++. .+.|+|.|.|.+.-.
T Consensus 13 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~ 75 (99)
T 2la6_A 13 NNTIFVQGLGE---------NVTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 75 (99)
T ss_dssp CSEEEEECCCS---------SCCHHHHHHHHTT--TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHH
Confidence 46677889986 4577899999999 77655 55555533 357999999986443
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=74.64 E-value=3.7 Score=33.31 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=35.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~~~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.+.. +........+.|++.|.|.+.
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~~~i~~~~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 9 CQIFVRNLPF---------DFTWKMLKDKFNE--CGHVLYADIKMENGKSKGCGVVKFESP 58 (92)
T ss_dssp CEEEECSCCT---------TCCHHHHHHHHHT--TSCEEEEEEEESSSCEEEEEEEEESSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEccCCCcceEEEEEECCH
Confidence 4567889986 4577899999999 86644 444433334689999999864
No 45
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.56 E-value=2.7 Score=36.60 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=39.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc--cccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR--VHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k--v~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.++.|-|+|. ..+...|++.|+. |.++. +.+.....| +.|+|.|.|.+.- .-..|+.
T Consensus 26 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPF---------EAENKHVIDFFKK--LDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALC 85 (124)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHSCS--SCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHH
Confidence 5778999986 4467889999998 77654 333444555 4799999998654 3444554
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.28 E-value=2.4 Score=35.45 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=41.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC--CCceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~--Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.++.|-|+|. ..+...|++.|+. |....+....+.. -+.|+|.|.|.+ ...-..|+.
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~ 74 (103)
T 2dng_A 15 PYTAYVGNLPF---------NTVQGDIDAIFKD--LSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALT 74 (103)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHTTT--SCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHGG
T ss_pred CeEEEEeCCCC---------CCCHHHHHHHHHh--CCceEEEEeecCCCCccceEEEEEECC-HHHHHHHHh
Confidence 45677889986 4577889999999 8666666666653 368999999985 333444443
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.87 E-value=4.8 Score=33.54 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=36.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccC---CCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWN---FRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~---~~Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+....+ ..-+.|+|.|.|.+.-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~ 69 (107)
T 2cph_A 16 SKILVRNIPF---------QANQREIRELFST--FGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 69 (107)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCCCCSSSCSSCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------cCCHHHHHHHHHc--cCCeEEEEEecCCCCCCCcCceEEEEECCHH
Confidence 4567889986 4577889999999 8764 4555444 3346899999998744
No 48
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=73.22 E-value=3.1 Score=36.92 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=37.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCC-ceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGH-SGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh-~G~aVV~F~~dw 182 (639)
-.+.|-|+|. ..+...|++.|+. |.+ ..+....+..|. +|++.|.|.+.-
T Consensus 96 ~~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 96 RKLFIGMISK---------KCTENDIRVMFSS--FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CeEEEcCCCC---------cCCHHHHHHHHHh--CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 3577889986 4577899999999 865 556666666665 899999998753
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.07 E-value=3.2 Score=34.17 Aligned_cols=51 Identities=24% Similarity=0.152 Sum_probs=36.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccC-CCC-CceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWN-FRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~-~~G-h~G~aVV~F~~dw 182 (639)
|.++.|-|+|. ..+...|++.|+. |.+.. +..+.. ..| +.|+|.|.|.+.-
T Consensus 15 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~ 68 (98)
T 2cqp_A 15 PTIIKVQNMPF---------TVSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESRD 68 (98)
T ss_dssp SEEEEEESCCT---------TCCHHHHHHHTTT--SCCCTTTCEEEECSSSCEEEEEEEEESCHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCCccceEEEEECCCCCeeeEEEEEECCHH
Confidence 45677899986 4577889999998 77654 444443 333 5799999997643
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.88 E-value=7.1 Score=31.67 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.++ .+....++. -++|++.|.|.+.
T Consensus 17 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 17 STVYVSNLPF---------SLTNNDLYRIFSK--YGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp TSEEEESCCT---------TSCHHHHHHHTTT--TSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 3567889986 4577889999999 8664 455555443 3689999999763
No 51
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.58 E-value=5 Score=32.69 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=35.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|+|.|.|.+.
T Consensus 6 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 6 SGLYVGSLHF---------NITEDMLRGIFEP--FGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 4577889986 4577889999999 7654 44555543 34679999999874
No 52
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=72.19 E-value=3.4 Score=37.80 Aligned_cols=57 Identities=18% Similarity=0.350 Sum_probs=39.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC-CC-CceeEEEeeCCChhchHhHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF-RG-HSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~~-~G-h~G~aVV~F~~dw~Gf~nA~ 189 (639)
+++++|-|+|. ..+...|.+.|+. |.++. |....+. .| +.|+|+|.|.+- ..-..|+
T Consensus 72 ~~~l~V~nLp~---------~~t~~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~Ai 131 (165)
T 1rk8_A 72 GWILFVTSIHE---------EAQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYETH-KQALAAK 131 (165)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESSH-HHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHhhc--CCCEEEEEEEecCCCCcEeeEEEEEECCH-HHHHHHH
Confidence 57888999996 4578899999999 87654 4444342 23 579999999853 3333444
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.76 E-value=4.8 Score=33.30 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
+-++.|-|+|. ..+...|++.|+. |.+ ..++...+..| +.|+|.|.|.+.-
T Consensus 17 ~~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 69 (100)
T 2do4_A 17 KHKLFISGLPF---------SCTKEELEEICKA--HGTVKDLRLVTNRAGKPKGLAYVEYENES 69 (100)
T ss_dssp CSCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEEECCCCCEEeEEEEEECCHH
Confidence 34577889986 4577889999999 775 45555555544 5699999997643
No 54
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=71.73 E-value=5.6 Score=34.38 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=37.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~d 181 (639)
.++.|-|++. ..+...|++.|+. |.+ ..+....+..| +.|+|.|.|.+-
T Consensus 36 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 36 AKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERR 86 (124)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHHHT--TSCCSEEEEECCSSSSCCSEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEECCCCCEeeEEEEEECCH
Confidence 4677889986 4577889999999 754 55666666655 679999999764
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=71.64 E-value=5 Score=33.40 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=37.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+. |.+ ..+....++.| +.|+|.|.|.+.-
T Consensus 15 ~~~l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 67 (105)
T 2dnh_A 15 DRKLFVGMLNK---------QQSEEDVLRLFQP--FGVIDECTVLRGPDGSSKGCAFVKFSSHT 67 (105)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECSSSCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcCcEEEEEeCCHH
Confidence 55677899986 4467889999999 765 45555555554 4799999998743
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.35 E-value=4.8 Score=33.35 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=36.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++. .+.|+|.|.|.+-
T Consensus 12 ~~~l~v~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 12 EGKLFVGGLSF---------DTNEQSLEQVFSK--YGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp CSEEEEESCCT---------TCCHHHHHHHHHH--HSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 34677889986 4577889999999 7654 555555432 3679999999763
No 57
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=71.20 E-value=3.4 Score=37.56 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=42.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC----cccccccCCCC-CceeEEEeeCCChhchHhHHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP----TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p----~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~f 191 (639)
.++.|-|+|. -.+...|++.|+. |.+ ..|+.++++.| ++|++.|.|.+. .....|+.+
T Consensus 45 ~~lfVgnLp~---------~~te~dL~~~F~~--~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~-e~a~~Al~~ 107 (136)
T 2hgl_A 45 FVVKLRGLPW---------SCSVEDVQNFLSD--CTIHDGAAGVHFIYTREGRQSGEAFVELGSE-DDVKMALKK 107 (136)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHTTT--CCCSSSSTTEEEEECSSSCEEEEEEEECSSH-HHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCcCceeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhc
Confidence 4677899986 3467889999999 765 57777877776 579999999853 344455543
No 58
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.20 E-value=5.6 Score=34.03 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=39.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
-++.|-|+|. -.+...|++.|+. |.++ .|....++.| +.|++.|.|.+. ..-..|+.
T Consensus 12 ~~lfV~~Lp~---------~~te~~L~~~F~~--~G~v~~v~i~~d~~g~~rG~aFV~F~~~-e~a~~Ai~ 70 (103)
T 1s79_A 12 RSVYIKGFPT---------DATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDSI-ESAKKFVE 70 (103)
T ss_dssp GCEEEECCCT---------TCCHHHHHHHHHT--SSCEEEEEEECCCTTSCCCEEEEEESSH-HHHHHHHT
T ss_pred CEEEEECCCC---------CCCHHHHHHHHhh--cCCEEEEEEEECCCCCCccEEEEEECCH-HHHHHHHH
Confidence 4677889886 3467889999999 8764 4555555444 689999999753 33344444
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=71.10 E-value=6 Score=32.49 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=35.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.+. .+....++ ..+.|+|.|.|.+.-
T Consensus 4 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPY---------DQTEEQILDLCSN--VGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 466788885 4577889999999 7654 45555543 346899999998643
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.05 E-value=7.1 Score=31.81 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=35.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-cc-ccccC-C-CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RV-HPLWN-F-RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv-~~l~~-~-~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. |.+. .+ ....+ . .-+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 6 SGIFIGNLDP---------EIDEKLLYDTFSA--FGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHT--TSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 4567889986 4567899999999 8765 44 45554 2 23689999999864
No 61
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.37 E-value=5.1 Score=31.21 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=37.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
++.|-|+|. ..+...|++.|+. |.+. .+....++ ..+.|+|.|.|.+.- .-..|+.
T Consensus 2 ~l~v~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~ 60 (77)
T 1uaw_A 2 KMFIGGLSW---------QTTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 60 (77)
T ss_dssp CEEEESCCS---------SCCSHHHHHHHTT--TSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHH
Confidence 467889886 4577889999999 7654 44444443 346899999998644 3334443
No 62
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=70.13 E-value=4.4 Score=31.50 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=37.5
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.|-|+|. ..+...|++.|+. |.+. .+....++ .-++|+|.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSP---------DTPEEKIREYFGG--FGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCS---------SCCHHHHHHHHHH--HSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 45778876 4577889999999 7664 44444443 346899999998654 3455554
No 63
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=70.03 E-value=6.1 Score=34.61 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=34.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~ 180 (639)
++.+.|-|+|. ..+...|++.|+.-|+....+... .....|++.|.|.+
T Consensus 28 ~~~l~VgnLp~---------~~te~dL~~~F~~~G~~v~~v~i~--~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 28 RYRITMKNLPE---------GCSWQDLKDLARENSLETTFSSVN--TRDFDGTGALEFPS 76 (111)
T ss_dssp CEEEEEECSSC---------CCCHHHHHHHHHHHTCCCSEEECS--SCSSSCCEEEEESS
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHHhCCeeEEEEEE--cCCCCCEEEEEECC
Confidence 46788999996 457789999999933323333332 23478999999986
No 64
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.37 E-value=9.6 Score=32.28 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=41.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhchHhHHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMSFE 192 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw~Gf~nA~~fe 192 (639)
..++.|-|++. ..+...|++.|+. |.+ ..|....+.. -+.|+|.|.|.+ ...-..|+.|+
T Consensus 25 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~ 87 (114)
T 2cq4_A 25 ARTVFCMQLAA---------RIRPRDLEDFFSA--VGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLT 87 (114)
T ss_dssp HTEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcC
Confidence 45677899986 3567889999999 765 4555555553 367999999965 44445555443
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.95 E-value=6.8 Score=32.57 Aligned_cols=50 Identities=22% Similarity=0.206 Sum_probs=36.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|+|.|.|.+.
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 15 DATVYVGGLDE---------KVSEPLLWELFLQ--AGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp TTEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 45677899986 4567889999999 7654 55555543 34779999999774
No 66
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=68.94 E-value=4.8 Score=33.41 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=40.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
|.++.|-|+|. ..+...|++.|+. |.+ ..+....+..| +.|+|.|.|.+.-. -..|+.
T Consensus 9 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDV---------RMDETEIRSFFAR--YGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 45677889886 4577889999999 765 45555555544 57999999986443 344443
No 67
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=68.87 E-value=5.6 Score=31.74 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=35.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. |.+ ..+....++ ..+.|+|.|.|.+.
T Consensus 7 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 7 FHVFVGDLSP---------EITTAAIAAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 4577889986 4577889999999 765 445555543 34689999999763
No 68
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.78 E-value=6.1 Score=32.67 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 13 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 65 (102)
T 2cqb_A 13 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 65 (102)
T ss_dssp SCEEEESCCS---------SCCHHHHHHHHTT--TSCCCCEECCCCSSSCCCSSEEEECCSSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHhhc--cCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4566889986 4567899999999 8654 44444442 247899999998643
No 69
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=68.72 E-value=5.8 Score=31.37 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=35.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
+++.|-|+|. ..+...|++.|+. |.+. .+....++ ..++|+|.|.|.+.-
T Consensus 2 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 54 (83)
T 3md1_A 2 FNLFVGDLNV---------NVDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 54 (83)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEcCCCCCccceEEEEECCHH
Confidence 3567889886 4567889999998 7654 44444442 345899999998643
No 70
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=68.49 E-value=6.2 Score=31.44 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=33.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC-CCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR-GHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~-Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ...+. ...+...|++.|+. |.+.....+.... .+.|+|.|.|.+.-
T Consensus 3 ~l~V~nLp~-~~~~~--~~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~~ 58 (81)
T 2krb_A 3 VIVVDNVPQ-VGPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPA 58 (81)
T ss_dssp EEEEESCCC-CCTTT--HHHHHHHHHHHHHT--TCCEEEEECCCBTTBCCCEEEEEESSHH
T ss_pred EEEEeCCCC-CcHHH--HHHHHHHHHHHHhh--cCCeEEEEecCCCCcEeEEEEEEECCHH
Confidence 467888885 11110 01145789999999 8765433333333 45799999998643
No 71
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.47 E-value=6.3 Score=32.72 Aligned_cols=52 Identities=23% Similarity=0.160 Sum_probs=37.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~dw~ 183 (639)
+-++.|-|+|. ..+...|++.|+. |.++ .+....++. -+.|+|.|.|.+.-.
T Consensus 13 ~~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 67 (103)
T 2dnm_A 13 MITLKVDNLTY---------RTSPDSLRRVFEK--YGRVGDVYIPREPHTKAPRGFAFVRFHDRRD 67 (103)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEECCBCSSSCSBCSCEEEEESSSSH
T ss_pred CeEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCCCCeEEEEEECCHHH
Confidence 34677889986 4577889999999 8664 444444433 367999999987543
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=67.98 E-value=93 Score=30.34 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006597 325 KLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRI 404 (639)
Q Consensus 325 kl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~ki 404 (639)
-|-.+||.....++.+.++|....+.-..+...+....+... .-.+-+..+++ +-+..-...++.+..+|
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~-~e~~~~~~~Lq---------~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY-AQSYKQVSVLE---------DDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 355666666677777776666544443333333221111100 00011122222 22333345678888999
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 006597 405 IQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKE 457 (639)
Q Consensus 405 l~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~ 457 (639)
..||..-| -||-....+...|+-+.+.-+ ....++.=|..+|.+|+
T Consensus 112 reLEq~ND---dlEr~~R~~~~SleD~e~kln----~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 112 RELEQAND---DLERAKRATIMSLEDFEQRLN----QAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---HHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 99998887 366666666777766655432 33456666777777655
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.85 E-value=7.6 Score=32.51 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=36.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+...+++. -+.|+|.|.|.+.-
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 16 KTVFIRNLSF---------DSEEEALGEVLQQ--FGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 4567889986 4577889999999 8764 455555543 36899999998644
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=67.65 E-value=5.8 Score=33.84 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=39.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.++.|-|+|. ..+...|++.|+. |.+. .++...+. ..+.|+|.|.|.+ -..-..|+.
T Consensus 25 ~~~lfV~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~ 85 (109)
T 2rs2_A 25 GCKMFIGGLSW---------QTTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 85 (109)
T ss_dssp -CCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHc--cCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHH
Confidence 45677889986 4567889999999 8664 45555544 3468999999975 333344443
No 75
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.38 E-value=4.9 Score=34.43 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=36.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC-----CCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR-----GHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~-----Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.++.+..+.... -+.|+|.|.|.+.-
T Consensus 10 ~lfVgnLp~---------~~te~~L~~~F~~--~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 10 KVFVGGLPP---------DIDEDEITASFRR--FGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp CEEEECCCT---------TCCHHHHHHHTTT--TCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEEcCCCC---------CCCHHHHHHHHHh--cCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 355788886 3467889999999 8887766666543 46899999998743
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=67.20 E-value=6.7 Score=32.97 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=35.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+....+. ..+.|+|.|.|.+.-
T Consensus 27 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 79 (110)
T 1oo0_B 27 WILFVTSIHE---------EAQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYETHK 79 (110)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEECCBCTTTSSBCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcceEEEEEECCHH
Confidence 4677889986 4577889999999 7654 44444443 346799999998643
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.10 E-value=4.4 Score=33.58 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=34.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~d 181 (639)
+-++.|-|+|. ..+...|++.|+. |.++ +.+....| +.|++.|.|.+.
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~g~v--~~~~~~~g~~~g~afV~f~~~ 63 (101)
T 2fc9_A 15 SKTLVLSNLSY---------SATEETLQEVFEK--ATFI--KVPQNQNGKSKGYAFIEFASF 63 (101)
T ss_dssp CSEEEEESCCT---------TCCHHHHHHHCSS--CSEE--ECCBCSSSCBCSEEEEECSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCEE--EEEECCCCCEeeEEEEEECCH
Confidence 45677889986 4577889999998 7655 44444444 679999999853
No 78
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.75 E-value=74 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhh
Q 006597 404 IIQLEKQLDAKQALALEIERLKGSL 428 (639)
Q Consensus 404 il~LekqL~~kQ~LELEi~qLkG~L 428 (639)
+.+.+.=|+-|-.|++||.--+.-|
T Consensus 104 l~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 104 NQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555788899999998766554
No 79
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.59 E-value=4.5 Score=33.25 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC-----CCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR-----GHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~-----Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.++ .+....++. -+.|+|.|.|.+.
T Consensus 6 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 6 SGLFIKNLNF---------STTEETLKGVFSK--VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 3567889986 4577899999999 8764 444444443 4679999999863
No 80
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=66.30 E-value=9.8 Score=29.56 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=37.2
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+.|-|+|. ..+...|++.|+. |.+. .+....++ .-++|+|.|.|.+. ..-..|+.
T Consensus 2 l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSV---------NTTVEDVKHYFEQ--FGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59 (75)
T ss_dssp EEEECCCS---------SCCHHHHHHHHHT--TSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHS
T ss_pred EEEecCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 45778886 4577889999999 7664 44444443 24679999999875 33344443
No 81
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.25 E-value=4.5 Score=32.72 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=33.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.+.....+. ..+.|+|.|.|.+.-
T Consensus 7 ~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~--~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 7 GVFVGRCTG---------DMTEDELREFFSQ--YGDVMDVFIP--KPFRAFAFVTFADDQ 53 (88)
T ss_dssp EEEEESCCS---------SSCHHHHHHHSTT--TSCCCEEECC--SSCCSCCEEECSCHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCeeEEEEe--cCCCCEEEEEECCHH
Confidence 456788886 4567889999999 8664333332 237899999999843
No 82
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.21 E-value=6.1 Score=33.43 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=36.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+..+.|-|+|. ..+...|++.|+. |.++ .+....+ |++.|+|.+. ..-..|+.
T Consensus 15 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~-----g~afV~f~~~-~~a~~Ai~ 68 (108)
T 1x4c_A 15 ENRVVVSGLPP---------SGSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVRK-EDMTYAVR 68 (108)
T ss_dssp CCEEEEESCCS---------SCCHHHHHHHHGG--GSCEEEEEEETT-----TEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEecC-----CEEEEEECCH-HHHHHHHH
Confidence 46778999996 4577899999999 7653 3444433 8999999873 33444444
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.16 E-value=7.5 Score=32.00 Aligned_cols=56 Identities=18% Similarity=0.349 Sum_probs=38.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
++.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|+|.|.|.+. ..-..|+.
T Consensus 12 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 70 (99)
T 2dgs_A 12 KIFVGGIPH---------NCGETELREYFKK--FGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVN 70 (99)
T ss_dssp EEEEESCCS---------SCCHHHHHHHHSS--SSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHH
Confidence 466889986 4577889999999 7654 45555543 33789999999763 33344444
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.08 E-value=8.4 Score=32.76 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.++ .++.+.++ .-+.|+|.|.|.+.
T Consensus 18 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 69 (116)
T 2cqd_A 18 TKIFVGGLPY---------HTTDASLRKYFEG--FGDIEEAVVITDRQTGKSRGYGFVTMADR 69 (116)
T ss_dssp SEEEEECCCS---------SCCHHHHHHHHHT--TSCEEEEEESCCSSSCCCCSEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCeeEEEEEEcCCCCccceEEEEEECCH
Confidence 4566889986 4577889999999 8654 45555543 34679999999753
No 85
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=65.94 E-value=5.9 Score=33.01 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=36.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+....+.. .+.|+|.|.|.+.-
T Consensus 24 ~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 24 WILFVTGVHE---------EATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhc--cCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 5677889986 4577889999999 7654 444444433 45799999998643
No 86
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=65.74 E-value=7.4 Score=32.18 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=37.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhchHhHHH-HHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS-FEK 193 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~-fek 193 (639)
++.|-|+|. ..+...|++.|+. |.+. .+....+ +.|+|.|.|.+.- .-..|+. |+.
T Consensus 2 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~---~~g~afV~f~~~~-~a~~A~~~l~g 59 (101)
T 2hvz_A 2 KVYVGNLGT---------GAGKGELERAFSY--YGPLRTVWIARN---PPGFAFVEFEDPR-DAEDAVRGLDG 59 (101)
T ss_dssp EEEEECCCS---------SCSHHHHHHHHHH--HCCCSEEEEESS---SSSEEEEECSSHH-HHHHHHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeC---CCCEEEEEECCHH-HHHHHHHHHCC
Confidence 356788885 4577889999999 7654 3443333 8899999997643 3344444 444
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.65 E-value=7.1 Score=32.96 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=36.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.+ ..+....+..| +.|++.|.|.+.
T Consensus 16 ~~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~ 66 (114)
T 2do0_A 16 STVFVANLDY---------KVGWKKLKEVFSM--AGVVVRADILEDKDGKSRGIGTVTFEQS 66 (114)
T ss_dssp SCEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTCSEEEEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCeeeEEEEEECCH
Confidence 3567889986 3477889999999 765 45566666655 479999999863
No 88
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=65.06 E-value=9.1 Score=32.92 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=36.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
++.+.|-|+|. ..+...|++.|+. |.++ .+....+ |++.|.|.+ ...-..|+.
T Consensus 16 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 16 ENRVVVSGLPP---------SGSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp -CCEEEEECCS---------SCCTTHHHHHHGG--GSCEEEEEECTT-----SEEEEEESS-HHHHHHHHH
T ss_pred CcEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 46788999996 3467889999999 7553 3333322 899999987 334445554
No 89
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.02 E-value=4.7 Score=33.54 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=36.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
+-++.|-|+|. ..+...|++.|+. |.++ .+....+..-+.|+|.|.|.+-
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 15 VVNLYVKNLDD---------GIDDERLRKAFSP--FGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCCEEEECCCT---------TCCHHHHHHTTTT--TSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 34567889986 4567889999998 7654 4555555334689999999853
No 90
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=64.95 E-value=8.9 Score=33.29 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=36.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..++|+|.|.|.+.-
T Consensus 63 ~~~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 116 (140)
T 2ku7_A 63 KRVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 116 (140)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEECCCCTTTCCCCSEEEEEESCHH
T ss_pred CcEEEEEeCCC---------CCCHHHHHHHHHh--cCCEEEEEEeecCCCCCcCcEEEEEECCHH
Confidence 45677889986 4567889999999 8654 45555543 346899999998743
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.80 E-value=7.1 Score=31.67 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+...+++. -++|+|.|.|.+--
T Consensus 16 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (95)
T 2cqc_A 16 CCLGVFGLSL---------YTTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENVD 68 (95)
T ss_dssp GCEEEESCCS---------SCCHHHHHHHHHT--TSCEEEEEEEECSSSSSEEEEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEcCCCCCcccEEEEEECCHH
Confidence 4566889986 4567889999999 8654 555555543 46799999998643
No 92
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=64.65 E-value=7.9 Score=33.23 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=41.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+...+++ ..+.|++.|.|.+.-. -..|+.|
T Consensus 36 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~l 97 (124)
T 2jwn_A 36 KRSVYVGNVDY---------GSTAQDLEAHFSS--CGSINRITILCDKFSGHPKGYAYIEFAERNS-VDAAVAM 97 (124)
T ss_dssp HTEEEEEEECT---------TCCHHHHHHHHHT--TSCEEEEEEEEECTTSSCEEEEEEEESSHHH-HHHHHTT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCCcccEEEEEECCHHH-HHHHHhc
Confidence 46778899986 4577889999999 8654 56666653 3468999999977543 3444443
No 93
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=64.46 E-value=6.1 Score=33.72 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=36.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
|-++.|-|+|. ..+...|++.|+. |.+. .+....++. .+.|+|.|.|.+.-
T Consensus 26 ~~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 79 (108)
T 2jrs_A 26 PMRLYVGSLHF---------NITEDMLRGIFEP--FGRIESIQLMMDSETGRSKGYGFITFSDSE 79 (108)
T ss_dssp CEEEEEECCCS---------SCCHHHHHHHHTT--TSCEEEEEEEEETTTTEEEEEEEEEESCHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 34667889986 5578899999999 7654 455554433 46799999998643
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=64.35 E-value=4.8 Score=33.62 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=39.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC---CCCceeEEEeeCCChhchHhHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF---RGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~---~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
+.++.|-|++. ..+...|++.|+. |....+....+. .-+.|+|.|.|.+ ...-..|+.+
T Consensus 19 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~l 80 (100)
T 2j76_E 19 PYTAFLGNLPY---------DVTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSALSL 80 (100)
T ss_dssp -CEEEESCCSS---------CCSSSHHHHHSCS--SCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHHHT
T ss_pred CcEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHHhc
Confidence 35666889886 3467789999998 656666666654 2368999999975 4444555543
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=64.03 E-value=9 Score=30.63 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=38.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCChhchHhHHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
++.|-|+|. ..+...|++.|+. |.+ ..+....++ ..+.|+|.|.|.+.- .-..|+.+
T Consensus 8 ~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~ 67 (89)
T 3ucg_A 8 SIYVGNVDY---------GATAEELEAHFHG--CGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSLAL 67 (89)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHGGG
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHhc
Confidence 567888885 3467889999999 765 445555443 346899999999754 33444433
No 96
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.91 E-value=11 Score=30.92 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.+. .+....++ .-+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 61 (99)
T 1whw_A 9 GRLFVRNLSY---------TSSEEDLEKLFSA--YGPLSELHYPIDSLTKKPKGFAFVTFMFPE 61 (99)
T ss_dssp EEEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCCCTTTCCCCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEeEEEEEecCCCCCcCeEEEEEECCHH
Confidence 4567889986 4567889999999 8664 45555554 236799999998743
No 97
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=63.03 E-value=7 Score=33.14 Aligned_cols=49 Identities=10% Similarity=0.238 Sum_probs=35.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. |.+ ..+....++ ..+.|+|.|.|.+-
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 16 FHVFVGDLSP---------EITTEDIKAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4567889986 4577889999999 765 445555553 34679999999763
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.89 E-value=15 Score=30.92 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=36.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~d 181 (639)
|-++.|-|+|. ..+...|++.|+. |.+ ..+....+..| +.|++.|.|.+.
T Consensus 25 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~ 76 (114)
T 1x5o_A 25 PTNLYISNLPL---------SMDEQELENMLKP--FGQVISTRILRDSSGTSRGVGFARMEST 76 (114)
T ss_dssp TTEEEEESCCT---------TCCHHHHHHTTTT--TSCEEEEEEEECSSSCEEEEEEEEESCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCcceEEEEEECCH
Confidence 56777889986 4577889999998 754 45555555554 579999999863
No 99
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=62.57 E-value=9.5 Score=30.53 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=37.0
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw~ 183 (639)
+-++.|-|+|. ..+...|++.|+. |.+ ..+....++. -+.|++.|.|.+.-.
T Consensus 11 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 65 (87)
T 3s7r_A 11 AGKMFVGGLSW---------DTSKKDLKDYFTK--FGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 65 (87)
T ss_dssp TTEEEEECCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSTHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEeecCCCCccccEEEEEECCHHH
Confidence 34677889986 4577889999998 865 4555555432 357999999986543
No 100
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.22 E-value=6.1 Score=32.93 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=39.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
.++.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|+|.|.|.+. ..-..|+..
T Consensus 17 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDW---------STTQETLRSYFSQ--YGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 4566889986 3577889999999 8654 55555543 24679999999864 334444443
No 101
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.06 E-value=7.4 Score=32.17 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=36.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.+ ..+...+++ .-+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 9 RSVFVGNIPY---------EATEEQLKDIFSE--VGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp SCEEEESCCT---------TSCHHHHHHHHHT--TSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred cEEEEeCCCC---------cCCHHHHHHHHHh--cCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 3567889886 4577899999999 765 455555553 235799999998643
No 102
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.88 E-value=9.8 Score=31.25 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=35.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.++.|-|+|. ..+...|++.|+. |.++.-..+. .+ .|+|.|.|.+.- .-..|+.
T Consensus 18 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~v~~~--~~-~g~afV~f~~~~-~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGP---------NTSLAALAREFDR--FGSIRTIDHV--KG-DSFAYIQYESLD-AAQAACA 71 (97)
T ss_dssp SCEEEECCCS---------SCCHHHHHHHHHT--TSCEEEEEEC--SS-SCCEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEe--CC-CCEEEEEECCHH-HHHHHHH
Confidence 4567889986 4577899999999 8764433332 22 789999997643 3334443
No 103
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=61.85 E-value=7.5 Score=32.91 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=36.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC---cccccccCCC--CCceeEEEeeCCChh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP---TRVHPLWNFR--GHSGCAVVEFHKDWP 183 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p---~kv~~l~~~~--Gh~G~aVV~F~~dw~ 183 (639)
+++|-|+|. -.+...|++.|+. |.+ ..|+...++. -++||+.|.|.+.-.
T Consensus 11 tlfV~nL~~---------~~tee~L~~~F~~--~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~ 65 (95)
T 2lkz_A 11 TIILRNIAP---------HTVVDSIMTALSP--YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMD 65 (95)
T ss_dssp EEEEESCCT---------TCCHHHHHHHSTT--TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHh--hCCccEEEEEEEecCCCCCCceEeEEEECCHHH
Confidence 467889986 3467899999999 874 3555555543 357999999987654
No 104
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.80 E-value=6 Score=31.58 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=38.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
-++.|-|+|. ..+...|++.|+. |.+. .+....++ ..+.|++.|.|.+.-. -..|+.
T Consensus 6 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 65 (85)
T 1x4e_A 6 SGLYIRGLQP---------GTTDQDLVKLCQP--YGKIVSTKAILDKTTNKCKGYGFVDFDSPSA-AQKAVT 65 (85)
T ss_dssp CEEEEESCCT---------TCCHHHHHTTSTT--TSCEEEEEEECCSSSCSCCSEEEEEESCHHH-HHHHHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCcEEEEEECCHHH-HHHHHH
Confidence 3567889886 4567889999998 7664 44444443 3468999999987433 344444
No 105
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=61.76 E-value=4.4 Score=26.72 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=17.9
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.||.|+.. +.....|.+|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 32 (37)
T 1p7a_A 7 TGIKPFQCPDCDRS---FSRSDHLALHRK 32 (37)
T ss_dssp CCSSSBCCTTTCCC---BSSHHHHHHHHG
T ss_pred CCCCCccCCCCCcc---cCcHHHHHHHHH
Confidence 45678999999743 444566777743
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=61.57 E-value=7.1 Score=31.81 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCC---CcccccccCC--CCCceeEEEeeCCChhchHhHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN---PTRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~---p~kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~ 189 (639)
++.|-|++. ..+...|++.|+. |. ...++...++ .-+.|++.|.|.+. ..-..|+
T Consensus 3 ~l~V~nL~~---------~~t~~~l~~~F~~--~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTW---------WTTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLM 62 (90)
T ss_dssp -CEEESCCT---------TCCHHHHHHHHHT--TTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHH
Confidence 456788875 3467889999999 65 4455555553 24689999999754 3334444
No 107
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=61.52 E-value=6.4 Score=38.49 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=39.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCChhch
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDWPGL 185 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~dw~Gf 185 (639)
.++.|-|+|. ..+...|++.|+. |.+ ..|..+.+..| ++|++.|.|.+.-.--
T Consensus 97 ~~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 97 AALTVKNLSP---------VVSNELLEQAFSQ--FGPVEKAVVVVDDRGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTSCEEEEEEEEESSHHHHH
T ss_pred CcccccCCCC---------CCCHHHHHHHHHh--cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHH
Confidence 4677889986 3467899999999 765 46666666666 5899999998765443
No 108
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=61.52 E-value=6.5 Score=31.75 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=35.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.+ ..+....++ ..+.|+|.|.|.+.-
T Consensus 3 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 3 NIYVGNLVY---------SATSEQVKELFSQ--FGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEEECT---------TSSHHHHTTTHHH--HTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEEECCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 356788885 4567889999999 765 455555554 346899999998755
No 109
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=61.51 E-value=9.1 Score=33.44 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=35.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.+. .+....++.| +.|+|.|.|.+.-
T Consensus 2 ~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~g~afV~f~~~~ 52 (166)
T 3md3_A 2 VLYVGNLDK---------AITEDILKQYFQV--GGPIANIKIMIDKNNKNVNYAFVEYHQSH 52 (166)
T ss_dssp EEEEEEEET---------TCCHHHHHHHHGG--GSCEEEEEEECCCC-CCEEEEEEEESSHH
T ss_pred EEEECCCCC---------cCCHHHHHHHHHh--cCCeEEEEEEECCCCCCCCEEEEEeCCHH
Confidence 456889886 4567889999999 7654 4666666544 6799999997643
No 110
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=61.22 E-value=6.8 Score=33.87 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=33.6
Q ss_pred EeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 126 VVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 126 I~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
|-|++. -.+...|++.|.. |.|+.-..+.- |+||+.|+|.+.
T Consensus 12 VgNL~~---------~~te~~L~~lF~q--~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 12 LKNLTA---------QIDGPTLRTLCMQ--HGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EECCCT---------TCCCHHHHHHHHH--HSCEEEEEEET---TTTEEEEEESSH
T ss_pred EeCCCc---------cCCHHHHHHHHHh--hCCEEEEEEcC---CCcEEEEEECCH
Confidence 688875 2466899999999 98877766643 789999999875
No 111
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.80 E-value=1.7e+02 Score=32.26 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=59.9
Q ss_pred eeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHH---
Q 006597 217 AWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEE--- 293 (639)
Q Consensus 217 GWvAradDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meE--- 293 (639)
|.| .-+|+...=|-|=- +.+++.+..|.-..-|..|+|.|..-.+.-...-.-.+.++..|+....+
T Consensus 35 pgC-aDeDwGvkCPSGCr---------LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~d 104 (491)
T 1m1j_A 35 PIC-VDDDWGTKCPSGCR---------MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQ 104 (491)
T ss_dssp CBC-CTTSTTTEECCSTT---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-ccccccCCCCCccc---------hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhcc
Confidence 344 55666654444422 23455666666666666666666666655555555555555555555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006597 294 KDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKK 335 (639)
Q Consensus 294 kd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~ 335 (639)
++....+|.+++++-+---.+-+..-|....-|+.-|+.+..
T Consensus 105 ndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~s 146 (491)
T 1m1j_A 105 LDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVV 146 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777655544444444444333444454544444
No 112
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=60.67 E-value=8.4 Score=37.71 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=42.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCChhchHhHHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
-++.|-|+|. ..+...|.+.|+. |.+ ..+....+..|..|+|.|.|.+ -..-..|+.+
T Consensus 42 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~ 100 (292)
T 2ghp_A 42 TTVLVKNLPK---------SYNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK 100 (292)
T ss_dssp CEEEEEEECT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh
Confidence 3567899996 4577889999999 765 5566666778889999999985 3334445443
No 113
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=60.65 E-value=8.1 Score=30.78 Aligned_cols=49 Identities=22% Similarity=0.145 Sum_probs=32.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhc----CC------CCcccccccCCCCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRR----GF------NPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~----GF------~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+.- |+ ....+.... ..|+|.|.|.+.-
T Consensus 6 ~~~l~V~nLp~---------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~ 64 (87)
T 2hzc_A 6 ARRLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVD 64 (87)
T ss_dssp GGEEEEESCCT---------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHH
Confidence 45677889986 45778999999993 32 122233222 2789999998743
No 114
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=60.36 E-value=3 Score=30.12 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=20.1
Q ss_pred CCCceEeecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 29 SGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 29 ~g~~kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
+|+-+|+ -||-||..+ +.+.+.|+-|-..
T Consensus 3 sgsskik-----qhcrfckkk---ysdvknlikhire 31 (37)
T 2elu_A 3 SGSSGIK-----QHCRFCKKK---YSDVKNLIKHIRD 31 (37)
T ss_dssp SCCCCCC-----CEETTTTEE---CSSHHHHHHHHHH
T ss_pred CchHHHH-----HHHHHHHHH---HHHHHHHHHHHHH
Confidence 4544554 699999733 4568999999643
No 115
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.15 E-value=5.2 Score=33.26 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (103)
T 2cq0_A 15 NATIRVTNLSE---------DTRETDLQELFRP--FGSISRIYLAKDKTTGQSKGFAFISFHRRE 68 (103)
T ss_dssp SEEEEEESCCT---------TCCHHHHHTTSTT--TCCEEEEEEEECSSSCSEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--CCCeEEEEEeecCCCCceeeEEEEEECCHH
Confidence 35567889986 4577889999998 8664 45555543 346899999998643
No 116
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=60.12 E-value=4.3 Score=33.23 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=33.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |....+ +.....+.|+|.|.|.+.-
T Consensus 17 ~~l~V~nL~~---------~~t~~~l~~~F~~--~g~v~~--~~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 17 RTLLAKNLSF---------NITEDELKEVFED--ALEIRL--VSQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp GEEEEESCCS---------SCCHHHHHHHHCS--EEEECC--EEETTEEEEEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhh--CCcEEE--eCCCCCcceEEEEEECCHH
Confidence 3566889986 4577889999998 754433 3334456899999998643
No 117
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=59.89 E-value=12 Score=31.54 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=35.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC--CCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
.+.|-|+|. ..+...|++.|+. |.++ .++...++. -+.|+|.|.|.+.-
T Consensus 21 ~lfV~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~afV~f~~~~ 72 (99)
T 4fxv_A 21 NLIVNYLPQ---------NMTQDELRSLFSS--IGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72 (99)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEeEeeecCCCCcccccEEEEECCHH
Confidence 467889996 4577899999999 8764 455555433 46799999998643
No 118
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.88 E-value=8.9 Score=31.80 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=37.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChhchHhHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~ 189 (639)
-++.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|+|.|.|.+. ..-..|+
T Consensus 16 ~~l~v~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~ 74 (103)
T 2cqg_A 16 SDLIVLGLPW---------KTTEQDLKEYFST--FGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVM 74 (103)
T ss_dssp CCEEEESCCS---------SCCHHHHHHHHGG--GSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHH
T ss_pred CEEEEEcCCC---------cCCHHHHHHHHHh--cCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHH
Confidence 3567889986 3467889999999 8664 55555554 34579999999763 3333344
No 119
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=59.67 E-value=11 Score=32.31 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=36.6
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC--CCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
..++.|-|+|. ..+...|.+.|+. |.++. |....++ .-+.|+|.|.|.+.-
T Consensus 22 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 75 (126)
T 3ex7_B 22 GWILFVTGVHE---------EATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 75 (126)
T ss_dssp SEEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCBCTTTSSBCSCEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 34677999986 4577889999999 76644 4444443 335899999998654
No 120
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=59.63 E-value=99 Score=27.74 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhh
Q 006597 403 RIIQLEKQLDAKQALALEIERLKGSL 428 (639)
Q Consensus 403 kil~LekqL~~kQ~LELEi~qLkG~L 428 (639)
.+.+.+.=|+-|-.|+.||.--+.-|
T Consensus 101 ql~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 101 LLREYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555788999999998766544
No 121
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.56 E-value=8.6 Score=31.77 Aligned_cols=48 Identities=21% Similarity=0.030 Sum_probs=36.1
Q ss_pred eEEEeeccccccCCCcccccCchhHH----HHHHhcCCCC-cccccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLR----DELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~----d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
.+.|-|+|. ..+...|+ +.|+. |.+ ..+....+..+ .|+|.|.|.+.-
T Consensus 11 ~l~V~nL~~---------~~~~~~l~~~l~~~F~~--~G~v~~v~i~~~~~~-rg~afV~f~~~~ 63 (96)
T 2dgx_A 11 DVQVSNIDY---------RLSRKELQQLLQEAFAR--HGKVKSVELSPHTDY-QLKAVVQMENLQ 63 (96)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHHH--HSCEEEEEECSCCST-TCCEEEEESSHH
T ss_pred EEEEECCCC---------CCCHHHHHHHHHHhccc--cCcEEEEEEEeCCCC-CeEEEEEECCHH
Confidence 566889986 44667788 99999 765 55666666666 899999998643
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.53 E-value=13 Score=30.43 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=36.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc--ccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT--RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~--kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.+. .+....++ ..+.|+|.|.|.+-
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 10 ASLWMGDLEP---------YMDENFISRAFAT--MGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp SEEEECSCCT---------TCCHHHHHHHHHH--TTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4566889986 4577899999999 8763 56666654 34679999999854
No 123
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=58.99 E-value=11 Score=29.93 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=35.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-C-CCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-R-GHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~-Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.+. .+....++ . .+.|+|.|.|.+.-
T Consensus 8 ~~l~V~nl~~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 60 (85)
T 3mdf_A 8 RVLYVGGLAE---------EVDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 60 (85)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CEEEEECCCC---------CCCHHHHHHHHhc--cCCEEEEEEEECCCCCccccEEEEEECCHH
Confidence 4567889986 3467899999999 7653 44444442 2 36899999998643
No 124
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.50 E-value=11 Score=30.58 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=32.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.+.....+. .|++.|.|.+.
T Consensus 9 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~~~-----~g~afV~f~~~ 52 (90)
T 2dnq_A 9 VKLFIGNLPR---------EATEQEIRSLFEQ--YGKVLECDII-----KNYGFVHIEDK 52 (90)
T ss_dssp EEEEEESCCS---------SCCHHHHHHHHHT--SSCEEEEEEE-----TTEEEEEESSH
T ss_pred eEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEE-----CCEEEEEECCH
Confidence 3566889986 4577889999999 8765443332 68999999863
No 125
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=58.48 E-value=9.2 Score=34.32 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=37.8
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC-C-CceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR-G-HSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~-G-h~G~aVV~F~~dw 182 (639)
+-++.|-|+|. ..+...|++.|+. |.+ ..|..+.++. | +.|+|.|.|.+.-
T Consensus 39 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 92 (156)
T 1h2v_Z 39 SCTLYVGNLSF---------YTTEEQIYELFSK--SGDIKKIIMGLDKMKKTACGFCFVEYYSRA 92 (156)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 46777899986 4567889999999 765 4555555543 3 5799999998643
No 126
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=58.19 E-value=48 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 006597 310 LSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILA 359 (639)
Q Consensus 310 ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~ 359 (639)
+.+-+-+++++.+|..||..|.--...|..|+.+|.--....-.+|.-|.
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl~ 53 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLM 53 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566789999999999999999999999999999877666666665554
No 127
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.15 E-value=10 Score=32.17 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=39.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCChhchHhHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
+-++.|-|+|. ..+...|++.|+. |.+ ..+....++. -+.|+|.|.|.+ -..-..|+.
T Consensus 27 ~~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~ 87 (116)
T 1x4b_A 27 FRKLFIGGLSF---------ETTEESLRNYYEQ--WGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMA 87 (116)
T ss_dssp HTEEEEECCTT---------CCCHHHHHHHHTS--SCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHT
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHH
Confidence 35677889986 3467889999998 865 4555555533 468999999975 333344443
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=58.11 E-value=11 Score=33.64 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.++ .++... ++.|++.|.|.+.-
T Consensus 74 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~---~~~g~afV~f~~~~ 121 (150)
T 2i2y_A 74 CKVYVGNLGN---------NGNKTELERAFGY--YGPLRSVWVAR---NPPGFAFVEFEDPR 121 (150)
T ss_dssp CEEEEESCCS---------CCSCHHHHHHHHH--HSCEEEEEECS---SSCSEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--hCCEEEEEEee---CCCcEEEEEECCHH
Confidence 4566889986 4567889999999 7654 333333 37899999997643
No 129
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=58.10 E-value=14 Score=31.89 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=36.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.+ ..+....+..| +.|+|.|.|.+.
T Consensus 8 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 8 GKLFIGGLNR---------ETNEKMLKAVFGK--HGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp CEEEEECCTT---------TCCHHHHHHHHHT--SSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 3567889986 4577889999999 765 45555555544 569999999863
No 130
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=57.90 E-value=8.5 Score=32.72 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=36.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw~ 183 (639)
.++.|-|+|. ..+...|++.|+. |.+. .++...++ ..+.|++.|.|.+.-.
T Consensus 41 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 94 (118)
T 2khc_A 41 CNLFIYHLPQ---------EFTDTDLASTFLP--FGNVISAKVFIDKQTSLSKCFGFVSFDNPDS 94 (118)
T ss_dssp EEEEEECSCT---------TCCHHHHHHHTTT--SCEEEEEEECCCSSSSCCCCEEEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEeCCCCCCcCcEEEEEECCHHH
Confidence 4567889986 4567889999998 8654 44444443 3468999999987543
No 131
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.85 E-value=12 Score=31.96 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=34.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
.++.|-|+|. ..+...|++.|+. |.+.....+-. ..|+|.|.|.+.-.
T Consensus 11 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~---~~g~afV~f~~~~~ 58 (111)
T 1whx_A 11 TVILAKNLPA---------GTLAAEIQETFSR--FGSLGRVLLPE---GGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEECCS---SSSCEEEEESCHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEeC---CCCEEEEEeCCHHH
Confidence 3567889986 4578899999999 87654333322 56799999986543
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.78 E-value=13 Score=30.68 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=33.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.+..|..+.-. +|+|.|.|.+.
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~g~g~v~~~~~~---~g~afV~f~~~ 61 (99)
T 2cpd_A 16 KILYVRNLML---------STSEEMIEKEFNN--IKPGAVERVKKI---RDYAFVHFSNR 61 (99)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TSTTCEEEEEEC---SSEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEEe---CCeEEEEeCCH
Confidence 3566889986 4577889999999 855555555433 56999999763
No 133
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.54 E-value=1.5e+02 Score=29.26 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=9.3
Q ss_pred hhchHHHHHHHHHHHHH
Q 006597 349 TQNENDRKILAEEIEKN 365 (639)
Q Consensus 349 ~~~~~er~kl~~e~~kn 365 (639)
+.|..+-..|..|++..
T Consensus 86 v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 86 IKSERELRSLNIEEDIA 102 (256)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 44555666666555543
No 134
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=57.42 E-value=10 Score=33.47 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=37.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC----CceeEEEeeCCChh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG----HSGCAVVEFHKDWP 183 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~G----h~G~aVV~F~~dw~ 183 (639)
++.|-|+|. ..+...|++.|+. |.+. .++...++.+ +.|+|.|.|.+.-.
T Consensus 5 ~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~ 59 (175)
T 3nmr_A 5 KMFVGQVPR---------TWSEKDLRELFEQ--YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 59 (175)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEecCCCCCCCcceEEEEEECCHHH
Confidence 456889886 4577889999999 8654 5555555554 68999999987643
No 135
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.38 E-value=10 Score=31.90 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.++ .+....+ .|+|.|.|.+.-
T Consensus 26 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~i~~~----~g~afV~f~~~~ 72 (109)
T 1x4g_A 26 CTVYCGGIAS---------GLTDQLMRQTFSP--FGQIMEIRVFPE----KGYSFVRFSTHE 72 (109)
T ss_dssp CEEEEECCSS---------CCCHHHHHHHHHH--HSCEEEEEEETT----TTEEEEEESSHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeCC----CCEEEEEECCHH
Confidence 4677899986 4577899999999 7654 4443333 789999998744
No 136
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=57.35 E-value=16 Score=32.15 Aligned_cols=50 Identities=8% Similarity=0.083 Sum_probs=36.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.+. .+....++ ..++|++.|.|.+.
T Consensus 87 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 87 TGKIFVGGIGP---------DVRPKEFEEFFSQ--WGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CEEEEEEEECT---------TCCHHHHHHHHHT--TSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred CCeEEECCCCC---------CCCHHHHHHHHHh--CccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 34678889986 4567889999999 8654 55555553 34779999999763
No 137
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=57.33 E-value=72 Score=35.20 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-cCccccc--------ceecC
Q 006597 437 DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRMG 507 (639)
Q Consensus 437 ~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~~~-~~~~~Ig--------iKrmG 507 (639)
++-++++..+.+|.+++.+.++++. ++++....++-.+..+ ...++|| |++-|
T Consensus 71 ~~~~~l~~~~~~l~~~i~~le~~~~------------------~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~g 132 (485)
T 3qne_A 71 EDAKDLIAEKEKLSNEKKEIIEKEA------------------EADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWT 132 (485)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEeC
Confidence 4456778888888888877777663 5555555666666666 4455666 88999
Q ss_pred CCC
Q 006597 508 ELD 510 (639)
Q Consensus 508 eld 510 (639)
+..
T Consensus 133 ~~~ 135 (485)
T 3qne_A 133 PEN 135 (485)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 138
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=57.19 E-value=12 Score=36.63 Aligned_cols=53 Identities=13% Similarity=0.011 Sum_probs=35.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCC-CceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|.+.|+.-|+....+.......| +.|++.|.|.+.-
T Consensus 117 ~~~l~v~nlp~---------~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 ECTLWMTNFPP---------SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp SCEEEEECCCT---------TCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 45677889986 45678899999994434566666655544 7899999998743
No 139
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.18 E-value=6.5 Score=32.50 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=33.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. | ..+..+... ..+.|+|.|.|.+.
T Consensus 16 ~~l~V~nLp~---------~~t~~~l~~~F~~--~--~~~~~~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2fc8_A 16 KTLFVKGLSE---------DTTEETLKESFDG--S--VRARIVTDRETGSSKGFGFVDFNSE 64 (102)
T ss_dssp SSEEEECCCT---------TCCHHHHHHTSTT--C--SEEEEEECSSSCSEEEEEEEECSSH
T ss_pred CEEEEeCCCC---------ccCHHHHHHHhcC--C--eEEEEEecCCCCCcCcEEEEEECCH
Confidence 4466889986 3567889998886 7 355555543 34679999999863
No 140
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.13 E-value=12 Score=29.69 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=32.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~ 180 (639)
-++.|-|+|. ..+...|++.|+. |.+.....+.. +.|+|.|.|.+
T Consensus 13 ~~l~V~~l~~---------~~t~~~l~~~f~~--~G~i~~~~~~~---~kg~afV~f~~ 57 (85)
T 2ytc_A 13 TTLYVGGLGD---------TITETDLRNHFYQ--FGEIRTITVVQ---RQQCAFIQFAT 57 (85)
T ss_dssp CCEEEECCTT---------TSCHHHHHHHHHT--TSCEEEEEEEG---GGTEEEEEESS
T ss_pred cEEEEcCCCC---------CCCHHHHHHHHHh--CCCEeEEEEEC---CCCEEEEEECC
Confidence 3566889986 4577899999999 86543333322 36899999986
No 141
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=56.99 E-value=5.2 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=15.0
Q ss_pred CeeeccCCCCCCccccccHHHHhhh
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
++|.|+.|+.. +.....|..|.
T Consensus 1 ~~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2m0f_A 1 GPLKCRECGKQ---FTTSGNLKRHL 22 (29)
T ss_dssp CCEECTTTSCE---ESCHHHHHHHH
T ss_pred CCccCCCCCCc---cCChhHHHHHH
Confidence 47999999732 34456677774
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=56.40 E-value=14 Score=34.49 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=38.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCC-CceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.+ ..|...++..| +.|+|.|.|.+.-
T Consensus 89 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~g~~kG~afV~F~~~~ 140 (177)
T 2f3j_A 89 AKLLVSNLDF---------GVSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERRA 140 (177)
T ss_dssp EEEEEECCCS---------CCCHHHHHHHHHH--TSCCSEEEECCCTTSSCSCCEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCEeeEEEEEeCCHH
Confidence 4777889986 5678899999999 865 45666666645 5799999998643
No 143
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=56.36 E-value=13 Score=30.73 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=34.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
.++.|-|++. ..+...|++.|+. |.+..-..+. -+.|+|.|.|.+.-.
T Consensus 28 ~~l~V~nlp~---------~~~~~~l~~~f~~--~G~i~~~~~~---~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 28 TTAYIGNIPH---------FATEADLIPLFQN--FGFILDFKHY---PEKGCCFIKYDTHEQ 75 (101)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TSCCSEEEEE---TTTTEEEEECSSHHH
T ss_pred CEEEEcCCCc---------ccCHHHHHHHHHh--CCCEEEEEEe---cCCCEEEEEECCHHH
Confidence 4567889986 4577899999999 8654433332 357899999987543
No 144
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.15 E-value=16 Score=30.50 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=33.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC--cccccc-cCCC--CCceeEEEeeCCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP--TRVHPL-WNFR--GHSGCAVVEFHKD 181 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p--~kv~~l-~~~~--Gh~G~aVV~F~~d 181 (639)
++.|-|+|. ..+...|++.|+. |.+ ..+... .... -+.|+|.|.|.+.
T Consensus 10 ~l~V~nLp~---------~~t~~~l~~~f~~--~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 10 RLFIGGIPK---------MKKREEILEEIAK--VTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp EEEEECCCT---------TSCHHHHHHHHHH--HSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred EEEEeCCCC---------cCCHHHHHHHHHH--hcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 466889886 4577899999999 744 344443 2222 4689999999863
No 145
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=55.60 E-value=15 Score=34.94 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=41.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC---cccccccCCCCCceeEEEeeCCChhchHhHHHHHHHhh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP---TRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYE 196 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p---~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe 196 (639)
+..|-|+|. ..+...|++.|+. |.+ ..++.+....+.+|++.|+|.+ ..-=..|+.-=+.+.
T Consensus 125 ~l~v~NLp~---------~~t~~~L~~~F~~--~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 125 VLHFFNAPL---------EVTEENFFEICDE--LGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQ 189 (205)
T ss_dssp EEEEEEECT---------TCCHHHHHHHHHH--HTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCE
T ss_pred eEEEeCCCC---------CCCHHHHHHHHHh--cCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCC
Confidence 466789986 4577899999999 665 4566555554567999999986 333344444333333
No 146
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.40 E-value=6.6 Score=33.60 Aligned_cols=59 Identities=24% Similarity=0.223 Sum_probs=37.4
Q ss_pred ceEEEeecccccc--CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRA--EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~--~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
.+++|.|+..... .+..+.......|++.|+. |.++.-..+... ...|++.|.|.+.-.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~--~G~v~~v~i~~~-~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK--FGQIRKLLLFDR-HPDGVASVSFRDPEE 76 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG--TSCCSEEEEETT-CTTCEEEEECSCHHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc--cCCEeEEEEecC-CCCEEEEEEECCHHH
Confidence 5688899864111 1222333345789999999 776544444433 478999999986544
No 147
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=55.39 E-value=13 Score=33.12 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=37.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++ ..+.|++.|.|.+.
T Consensus 70 ~~~l~v~nl~~---------~~~~~~l~~~F~~--~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 70 MTSLKVDNLTY---------RTSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCEEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEeecCCCCccceEEEEEECCH
Confidence 45677889986 4577899999999 7654 55555553 34789999999863
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=55.11 E-value=9.2 Score=32.25 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=34.6
Q ss_pred ceEEEeeccccccCCCcccc-cCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVG-ESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G-~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
-++.|-|+|. . .+...|++.|+. |.++.-..+ +.|+|.|.|.+.-.
T Consensus 28 ~~l~V~nl~~---------~~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 28 SRVFIGNLNT---------ALVKKSDVETIFSK--YGRVAGCSV-----HKGYAFVQYSNERH 74 (110)
T ss_dssp SEEEECSCCC---------SSCCHHHHHHHHGG--GSCCSEEEE-----ETTEEEEECSSSHH
T ss_pred cEEEEeCCCc---------ccCCHHHHHHHHHh--CCCeEEEEE-----eCCEEEEEECCHHH
Confidence 3677889986 3 467889999999 776544444 68999999987543
No 149
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=54.86 E-value=1.5e+02 Score=28.42 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006597 396 QKEDLHNRIIQLEKQLD 412 (639)
Q Consensus 396 Eke~~~~kil~LekqL~ 412 (639)
++..+..+|..|||+-.
T Consensus 119 e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55567777777777543
No 150
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=54.75 E-value=13 Score=31.54 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=36.0
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. |.+ ..++...++ .-+.|++.|.|.+.
T Consensus 26 ~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 26 ANLFIYHLPQ---------EFGDQDLLQMFMP--FGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp CCEEEESCCS---------SCCHHHHHHHHGG--GSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 4567889986 4567889999999 765 455555554 34679999999863
No 151
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=54.73 E-value=4.6 Score=33.04 Aligned_cols=50 Identities=18% Similarity=0.047 Sum_probs=33.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHH----HHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLR----DELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~----d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|+ +.|+. |.+.....+.....+.|+|.|.|.+.-
T Consensus 9 ~~l~V~nLp~---------~~~~~~l~~~l~~~f~~--~G~i~~v~i~~~~~~~g~afV~f~~~~ 62 (97)
T 1nu4_A 9 HTIYINNLNE---------KIKKDELKKSLHAIFSR--FGQILDILVSRSLKMRGQAFVIFKEVS 62 (97)
T ss_dssp SEEEEESCCT---------TSCHHHHHHHHHHHHGG--GSCEEEEECCHHHHHTTCEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHHHHHh--CCCEEEEEEEcCCCcCcEEEEEeCCHH
Confidence 3567889886 45677788 99999 766544333322235689999998543
No 152
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=54.70 E-value=13 Score=31.32 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=35.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCC-CCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFR-GHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~-Gh~G~aVV~F~~dw~ 183 (639)
-++.|-|+|. ...+. ...+...|++.|+. |.++....+-... -+.|+|.|.|.+.-.
T Consensus 16 ~~l~V~nLp~-~~~~~--~~~t~~~l~~~F~~--~G~v~~v~i~~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 16 SVIVVDNVPQ-VGPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp SEEEEESCCC-CCTTT--TTHHHHHHHHHHGG--GSCEEEEECCCBTTBSCCEEEEEECSSSH
T ss_pred CEEEEeCCCc-chhhh--hHHHHHHHHHHHhc--CCCEEEEEeeCCCCCeeeEEEEEECCHHH
Confidence 3567889985 21110 01145789999999 8765433333333 467999999987544
No 153
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=54.65 E-value=6.4 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.792 Sum_probs=15.2
Q ss_pred CeeeccCCCCCCccccccHHHHhhh
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQR---SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSCE---ESSHHHHHHHH
T ss_pred cCccCCCcChh---hCCHHHHHHHH
Confidence 57999999733 44456677774
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=54.16 E-value=16 Score=32.27 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=38.4
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCC-C-CCceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNF-R-GHSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~~-~-Gh~G~aVV~F~~dw~ 183 (639)
+.++.|-|+|. ..+...|++.|+. |.+.. +....++ . -+.|++.|.|.+.-.
T Consensus 94 ~~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~ 148 (172)
T 2g4b_A 94 AHKLFIGGLPN---------YLNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148 (172)
T ss_dssp TTCEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTTCSEEEEEEEEESSTTH
T ss_pred CCEEEEEcCCC---------cCCHHHHHHHHHh--cCCceEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 67888999986 4467899999999 87644 4444453 2 357999999987544
No 155
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=53.87 E-value=1.3e+02 Score=32.63 Aligned_cols=97 Identities=12% Similarity=0.221 Sum_probs=51.2
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc-----------hHHHHHHHHHH---HH
Q 006597 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET-----------SNSVEKLMEEK---DR 296 (639)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~-----------s~sL~r~meEk---d~ 296 (639)
|-.+|.|+ .-=|....+....+|..++|.=.....+++.|..++... +..=.+||+|+ +.
T Consensus 25 l~d~L~ky------e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~ 98 (411)
T 3ghg_C 25 IADFLSTY------QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEA 98 (411)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 55566554 333444555556666666666666666666676665432 34444577775 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 006597 297 LLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRG 341 (639)
Q Consensus 297 l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~ 341 (639)
++..+...|+.+|..+ .-+..+-.+|..+...|+.+|
T Consensus 99 ~~~~~~~~i~~l~~~~--------~~~~~~i~~L~~~v~~l~~~~ 135 (411)
T 3ghg_C 99 SILTHDSSIRYLQEIY--------NSNNQKIVNLKEKVAQLEAQC 135 (411)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555433 333333345555555555444
No 156
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.85 E-value=6.5 Score=25.60 Aligned_cols=24 Identities=25% Similarity=0.564 Sum_probs=16.3
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+.+|.|+.|+.. +.....|..|-
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elt_A 6 SGKPYKCPQCSYA---SAIKANLNVHL 29 (36)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCCCCCCCCCcc---cCCHHHHHHHH
Confidence 4578999999733 34455677774
No 157
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=53.71 E-value=15 Score=33.71 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=33.8
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+.-||.+..+..+.. ..|++.|.|.+.
T Consensus 121 ~~l~v~nl~~---------~~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPP---------SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCT---------TCCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCH
Confidence 4566788885 45678999999995444455555443 368999999763
No 158
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=53.57 E-value=12 Score=35.36 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=36.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC-CceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.++ .|+...+..| +.|+|.|+|.+.-
T Consensus 110 ~~l~V~nLp~---------~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPT---------DATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCT---------TCCHHHHHHHHTT--SCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCC---------cCCHHHHHHHHhc--CCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 4677899986 3467889999999 8764 4444444444 6799999998744
No 159
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.80 E-value=7.1 Score=25.60 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=16.7
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
++.+|.||.|... +..-..|..|..
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2els_A 6 SGKIFTCEYCNKV---FKFKHSLQAHLR 30 (36)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCEECCCCCce---eCCHHHHHHHHH
Confidence 4678999999733 344556777743
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=52.52 E-value=10 Score=35.70 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=38.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
.+.|-|++. ..+...|++.|+. |.+ ..++.+.+..+.+|++.|.|.+.-
T Consensus 105 ~l~v~nl~~---------~~t~~~l~~~F~~--~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 105 NIFIKNLDK---------SIDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cceECCccc---------ccHHHHHHHHHhh--cCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 466889886 3467899999999 765 566677777888999999997754
No 161
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.39 E-value=7.7 Score=25.23 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=17.2
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
..+.+|.|+.|... +.....|..|-
T Consensus 5 ~~~~~~~C~~C~k~---f~~~~~l~~H~ 29 (36)
T 2elr_A 5 SSGKTHLCDMCGKK---FKSKGTLKSHK 29 (36)
T ss_dssp CCCSSCBCTTTCCB---CSSHHHHHHHH
T ss_pred CCCCCeecCcCCCC---cCchHHHHHHH
Confidence 45678999999733 44455677774
No 162
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=52.36 E-value=13 Score=32.67 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=37.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCChhchHhHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~G-h~G~aVV~F~~dw~Gf~nA~ 189 (639)
++.|-|+|. ..+...|++.|+. |.+. .+....++ .| +.|+|.|.|.+. ..-..|+
T Consensus 5 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~ 62 (168)
T 1b7f_A 5 NLIVNYLPQ---------DMTDRELYALFRA--IGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAI 62 (168)
T ss_dssp EEEEECCCT---------TCCHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHH
Confidence 467889986 4577889999999 8765 45545443 23 679999999854 3334444
No 163
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=51.89 E-value=1.1e+02 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.130 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 006597 321 TDHEKLKLQLESQKKELELRGEELE 345 (639)
Q Consensus 321 ~e~ekl~~eLe~k~~eL~~r~~~L~ 345 (639)
.+.+-....|.+++.+|+...++|.
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555444443
No 164
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.81 E-value=7.7 Score=25.57 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=16.7
Q ss_pred ecCCeeeccCCCCCCcccccc-HHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLY-KDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~-~~LLqHA 63 (639)
.++.+|.|+.|+.. +..- ..|..|-
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~~L~~H~ 30 (37)
T 2elp_A 5 SSGRAMKCPYCDFY---FMKNGSDLQRHI 30 (37)
T ss_dssp CCCCCEECSSSSCE---ECSSCHHHHHHH
T ss_pred CCCCCeECCCCChh---hccCHHHHHHHH
Confidence 35678999999733 3333 5677774
No 165
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.76 E-value=17 Score=29.50 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=33.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccc-cccCCCCCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVH-PLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~-~l~~~~Gh~G~aVV~F~~dw 182 (639)
+.++.|-|+|. ..+...|++.|+. |.++.-. .+ -....+|.+.|.|.+.-
T Consensus 15 ~~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~~~~i-~~~~~~~~afV~f~~~~ 65 (96)
T 2e44_A 15 IRKLQIRNIPP---------HLQWEVLDSLLVQ--YGVVESCEQV-NTDSETAVVNVTYSSKD 65 (96)
T ss_dssp CCCEEEEEECS---------SSCHHHHHHHHHH--HSCEEEEEEE-CCSSSSEEEEEEESSHH
T ss_pred CCEEEEEcCCC---------CCCHHHHHHHHHh--cCCeEEEEEe-ecCCCCCEEEEEECCHH
Confidence 35677899986 4577889999999 8764443 22 22334556999998643
No 166
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=51.70 E-value=16 Score=33.15 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=38.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~G-h~G~aVV~F~~dw~ 183 (639)
+.++.|-|+|. ..+...|++.|+. |.+. .+....++ .| +.|++.|.|.+.-.
T Consensus 114 ~~~l~v~nl~~---------~~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPN---------YLNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCT---------TCCHHHHHHHHHT--BSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--cCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 46677889986 4467889999999 7664 55555553 33 58999999987654
No 167
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=51.65 E-value=7.3 Score=33.52 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=39.0
Q ss_pred ceEEEeecccccc-CCCcccccCchhHHHHHHhcCCCCc-ccccccCCCC----CceeEEEeeCCChhc
Q 006597 122 WTGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRG----HSGCAVVEFHKDWPG 184 (639)
Q Consensus 122 wmgII~Ni~t~e~-~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~G----h~G~aVV~F~~dw~G 184 (639)
.+++|.|+.+.+. .+......--..|++.|+. |.++ .|...-+..+ ..|++.|.|.+.-..
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k--~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK--YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT--TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc--cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 3578999976222 2322233444789999999 8764 4544444444 369999999986443
No 168
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.65 E-value=20 Score=29.53 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=36.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHh-cCCCCcccccccCCCC-CceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIR-RGFNPTRVHPLWNFRG-HSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~-~GF~p~kv~~l~~~~G-h~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. -|- ...+....+..| +.|+|.|.|.+--
T Consensus 10 ~~l~V~nLp~---------~~t~~~l~~~F~~~~G~-v~~v~i~~~~~g~~~g~afV~f~~~~ 62 (104)
T 2dhg_A 10 YSLFVGDLTP---------DVDDGMLYEFFVKVYPS-CRGGKVVLDQTGVSKGYGFVKFTDEL 62 (104)
T ss_dssp CCEEEECCCT---------TCCHHHHHHHHHHHCTT-EEEEEEEECTTCCEEEEEEEEESCHH
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHHhCCC-eEEEEEEECCCCCccceEEEEECCHH
Confidence 4567889986 3467889999986 442 456666666555 5899999998644
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=51.63 E-value=15 Score=31.93 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=36.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.+ ..+....++ .-++|++.|.|.+.
T Consensus 87 ~~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 87 TFNLFVGDLNV---------NVDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp CEEEEEESCCT---------TCCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CceEEECCCCC---------CCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 34677889986 4567899999998 876 445555442 34578999999864
No 170
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.14 E-value=12 Score=30.30 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=33.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.+ .....+. +.|+|.|.|.+.-
T Consensus 10 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 10 KLYIGNLSP---------AVTADDLRQLFGD--RKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp CEEEECCCT---------TCCHHHHHHHHHH--TTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--cCCceEEEEEc----CCCEEEEEECCHH
Confidence 466789886 4577899999999 776 5544442 4789999998643
No 171
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=51.02 E-value=16 Score=31.51 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=37.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
-++.|-|++. ..+...|++.|+. |.+ ..+...+++. -+.|++.|.|.+.-
T Consensus 7 ~~lfV~nL~~---------~~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~ 59 (110)
T 3s8s_A 7 KEVTFARLND---------NVRETFLKDMCRK--YGEVEEVEILLHPRTRKHLGLARVLFTSTR 59 (110)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cEEEEECCCC---------CCCHHHHHHHHHh--cCCeeEEEEEECCCCCceeeEEEEEECCHH
Confidence 3577889885 4577899999999 876 4566666654 36899999998743
No 172
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=51.01 E-value=11 Score=33.06 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=40.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---cccccCC--CCCceeEEEeeCCChhchHhHHHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---VHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSFE 192 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k---v~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~fe 192 (639)
++.|-|+|. ..+...|++.|+. |.++. |+...++ .-+.||+.|.|.+. ..-.-...|+
T Consensus 25 ~lfV~nL~~---------~~te~~L~~~F~~--~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 25 TIILRNLNP---------HSTMDSILGALAP--YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp EEEECSCCT---------TCCSHHHHHHHGG--GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHH--hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 566889986 3467889999999 76553 5666665 23679999999987 5433333343
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=50.86 E-value=11 Score=33.57 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=35.1
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
+.++.|.|+|. ..+...|++.|+. |....+. ....-++|++.|.|.+.
T Consensus 99 ~~~l~v~nlp~---------~~t~~~l~~~F~~--~g~v~~~--~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 99 ARTLLAKNLSF---------NITEDELKEVFED--ALEIRLV--SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp GGEEEEESCCS---------SCCHHHHHHHCTT--CSEEEEE--CSSSSCCSEEEEECSSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCeEEEe--cCCCCCceEEEEEECCH
Confidence 45778899986 3467889999998 7554443 33445789999999863
No 174
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=50.37 E-value=14 Score=31.53 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=32.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
+-++.|-|+|. ..+...|++.|+. |.++....+. .|+|.|.|.+.
T Consensus 31 ~~~l~V~nLp~---------~~t~~~L~~~F~~--~G~i~~v~i~-----kg~afV~f~~~ 75 (108)
T 2jvo_A 31 NTRLFVRPFPL---------DVQESELNEIFGP--FGPMKEVKIL-----NGFAFVEFEEA 75 (108)
T ss_dssp CSEEEECSSCT---------TCCHHHHHHHHTT--TSCCCEEEEE-----TTEEEEECSSH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEECCH
Confidence 34566889986 4567889999999 8765443333 78999999863
No 175
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.34 E-value=14 Score=30.50 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=33.7
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
.++.|-|+|. ..+...|++.|+. |.+.....+-. ..|+|.|.|.+.-.
T Consensus 16 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~i~~v~~~~---~kg~afV~f~~~~~ 63 (99)
T 2cpj_A 16 SRLFVGNLPP---------DITEEEMRKLFEK--YGKAGEVFIHK---DKGFGFIRLETRTL 63 (99)
T ss_dssp TEEEEESCCT---------TCCHHHHHHHTST--TCCCSEEEEET---TTTEEEEECSSSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHhh--cCCeEEEEEec---CCCEEEEEECCHHH
Confidence 4677889986 3567889999999 76544333322 26899999987543
No 176
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=50.00 E-value=8.6 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=15.8
Q ss_pred CeeeccCCCCCCccccccHHHHhhhh
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~~~---f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGRS---FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 57999999733 344566777754
No 177
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.92 E-value=22 Score=28.79 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=31.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~ 180 (639)
+-++.|-|+|. ..+...|++.|+. |.++....+. .|+|.|.|.+
T Consensus 10 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~v~~~-----~~~afV~f~~ 53 (92)
T 2dgt_A 10 STKLHVGNISP---------TCTNQELRAKFEE--YGPVIECDIV-----KDYAFVHMER 53 (92)
T ss_dssp SEEEEEESCCS---------SCCHHHHHHHHHT--TSCCCEEEEC-----SSEEEEEESC
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEE-----CCEEEEEECC
Confidence 34567889986 4577899999999 7654333332 3499999986
No 178
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.77 E-value=8.5 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
++.+|.|+.|+.. +.....|..|-.
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 28 (35)
T 2elx_A 4 GSSGYVCALCLKK---FVSSIRLRSHIR 28 (35)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCeECCCCcch---hCCHHHHHHHHH
Confidence 4678999999733 344556777743
No 179
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=49.25 E-value=18 Score=32.72 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=36.9
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+..+.+. ..+.|++.|.|.+.
T Consensus 104 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 104 VKKIFVGGIKE---------DTEEHHLRDYFEQ--YGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CSEEEEECCTT---------TCCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cceEEEeCCCC---------CCCHHHHHHHHhc--CCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 36788899986 3567889999998 8764 45555553 23689999999873
No 180
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=49.00 E-value=9.8 Score=31.81 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=37.0
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC-C-CceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR-G-HSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~-G-h~G~aVV~F~~dw 182 (639)
+++|-|+|. -.. .....+...|++.|+. |.+ ..++...++. | +.|++.|.|.+.-
T Consensus 8 ~vfV~nLp~-v~~--~~~~~~~~~L~~~F~~--~G~i~~v~i~~d~~tg~~kG~afV~f~~~~ 65 (100)
T 3ns6_A 8 YIVVNGAPV-IPS--AKVPVLKKALTSLFSK--AGKVVNMEFPIDEATGKTKGFLFVECGSMN 65 (100)
T ss_dssp EEEEESCCC-CBG--GGHHHHHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred EEEEeCCCc-CCh--HHHHHHHHHHHHHHHh--cCCEeEEEEEEcCCCCccceEEEEEECCHH
Confidence 577889984 111 1113456789999999 775 4466666654 4 6799999998643
No 181
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=48.76 E-value=14 Score=32.77 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=36.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .+....++ .-+.|++.|.|.+.
T Consensus 47 ~~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 47 MTSLKVDNLTY---------RTSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp CCCEEEECCCS---------SCHHHHHHHHHGG--GSCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEecCCCCccceEEEEEECCH
Confidence 35677899986 4577899999999 7654 55555543 34789999999863
No 182
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.24 E-value=9.7 Score=32.13 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=33.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---cccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---VHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k---v~~l~~~~Gh~G~aVV~F~~d 181 (639)
-++.|-|+|. ..+...|++.|+. |.++. +..-.....+.|+|.|.|.+.
T Consensus 26 ~~l~V~nLp~---------~~t~~~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSP---------RVTERDLVSLFAR--FQEKKGPPIQFRMMTGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHTHH--HHHSSSSCCEEEEECSSSCSEEEEECSSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCccceEEEEEcCCCccceEEEEEECCH
Confidence 4677889986 4567889999998 75541 111112445679999999863
No 183
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.24 E-value=9 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+..+|.|+.|... +.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elq_A 6 SGKPFKCSLCEYA---TRSKSNLKAHMN 30 (36)
T ss_dssp CCCSEECSSSSCE---ESCHHHHHHHHH
T ss_pred CCCCccCCCCCch---hCCHHHHHHHHH
Confidence 4678999999733 444556777743
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=47.97 E-value=19 Score=31.39 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=34.8
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-C-CCceeEEEeeCCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-R-GHSGCAVVEFHKD 181 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~-Gh~G~aVV~F~~d 181 (639)
++.|-|+|. ..+...|++.|+. |.+. .+....++ . .+.|+|.|.|.+.
T Consensus 4 ~l~v~nlp~---------~~~~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 54 (167)
T 1fxl_A 4 NLIVNYLPQ---------NMTQEEFRSLFGS--IGEIESCKLVRDKITGQSLGYGFVNYIDP 54 (167)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred eEEEcCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEeCCCCCcceeEEEEEECCH
Confidence 467889986 4577889999999 7764 45555444 3 3569999999863
No 185
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=47.85 E-value=9.4 Score=24.70 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=17.5
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+..+|.|+.|... +.....|..|-.
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 28 (35)
T 1srk_A 4 GKRPFVCRICLSA---FTTKANCARHLK 28 (35)
T ss_dssp CCSCEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCcCeeCCCCCcc---cCCHHHHHHHHH
Confidence 4678999999733 445566777754
No 186
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.39 E-value=9.8 Score=25.80 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=17.8
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +.....|..|-
T Consensus 6 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 31 (42)
T 2en2_A 6 SGGEKPYKCETCGAR---FVQVAHLRAHV 31 (42)
T ss_dssp CCSSCSEECTTTCCE---ESSHHHHHHHT
T ss_pred cCCCCCEeCCCcChh---hCCHHHHHHHH
Confidence 346789999999743 44455676774
No 187
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=47.28 E-value=9.8 Score=23.19 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=15.9
Q ss_pred CeeeccCCCCCCccccccHHHHhhhh
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+|.|+.|+.. +.....|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGKR---FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCCE---ESCHHHHHHHHT
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 57999999733 445567777843
No 188
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=47.16 E-value=16 Score=32.36 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.+ ..+...+++. -+.|+|.|.|.+.-
T Consensus 47 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 99 (129)
T 2kxn_B 47 CCLGVFGLSL---------YTTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENVD 99 (129)
T ss_dssp SCBCEETCTT---------SCCHHHHHHHHTT--TSCEEEEEEECCSSSSCCCCEEEEEESCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH
Confidence 3456889986 4577889999999 865 4555555543 46899999997643
No 189
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=46.99 E-value=17 Score=32.08 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=37.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccc---ccc-----CCCCCceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVH---PLW-----NFRGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~---~l~-----~~~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
-++.|-|+|. ..+...|++.|+. |.+.... +.+ ...-+.|+|.|.|.+.-. -..|+.
T Consensus 46 ~~l~V~nLp~---------~~te~~L~~~F~~--~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~-A~~Ai~ 110 (143)
T 3egn_A 46 CRIYVKNLAK---------HVQEKDLKYIFGR--YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA-AAKALK 110 (143)
T ss_dssp SEEEEEEECT---------TCCHHHHHHHHGG--GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH-HHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--hCCcccccccceeeEEeccCCCcccEEEEEeCCHHH-HHHHHH
Confidence 3577889986 4577899999999 7654431 111 234568999999975433 333444
No 190
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.46 E-value=18 Score=29.19 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=31.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. |.+.....+. .|++.|.|.+.
T Consensus 10 ~~l~V~nlp~---------~~t~~~l~~~F~~--~G~v~~~~~~-----~~~afV~f~~~ 53 (90)
T 2dnp_A 10 WKIFVGNVSA---------ACTSQELRSLFER--RGRVIECDVV-----KDYAFVHMEKE 53 (90)
T ss_dssp CCEEEESCCT---------TCCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHc--CCCEEEEEEE-----CCEEEEEECCH
Confidence 4567889986 4577899999999 7664333332 34999999864
No 191
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=46.09 E-value=14 Score=32.29 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=35.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC--CCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR--GHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~--Gh~G~aVV~F~~dw 182 (639)
++.|-|++. ..+...|++.|+. |.+ ..|....+.. -+.|+|.|.|.+.-
T Consensus 44 ~l~V~nLp~---------~~~~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 95 (139)
T 1u6f_A 44 NLMVNYIPT---------TVDEVQLRQLFER--YGPIESVKIVCDRETRQSRGYGFVKFQSGS 95 (139)
T ss_dssp EEEEESCST---------TCCHHHHHHHHHH--HSCEEEEEEEEETTTTEEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 466789886 4567889999999 765 4555555543 35899999998643
No 192
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=45.98 E-value=11 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=13.8
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+|.|+.|+.. +..-..|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTRA---FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCCB---CSSHHHHHHHH
T ss_pred CeECCCCCcc---cCCHHHHHHHH
Confidence 6899999743 33445566664
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=45.82 E-value=54 Score=35.15 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=39.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCChhchHhHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKDWPGLHNAM 189 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~G-h~G~aVV~F~~dw~Gf~nA~ 189 (639)
-++.|-|++. ..+...|.+.|+. |.++ .|..+++. .| +.|||.|.|...-. -..|+
T Consensus 103 ~~lfV~nL~~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNY---------DTTESKLRREFEV--YGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--cCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 4677889986 4567889999999 8764 55555553 34 57999999976544 33444
No 194
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=45.03 E-value=9.6 Score=31.46 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=39.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCC--CCCceeEEEeeCCChhchHhHHHH
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNF--RGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~--~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
+-++.|-|+|. ..+...|++.|+. |.++....+... .-+.|+|.|.|.+. ..-..|+.|
T Consensus 17 ~~~l~V~nLp~---------~~t~~~l~~~F~~--~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l 77 (101)
T 1fj7_A 17 PFNLFIGNLNP---------NKSVAELKVAISE--LFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALEL 77 (101)
T ss_dssp SEEEEEECCCT---------TSCHHHHHHHHHH--HHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHHG
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHH--hCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHhc
Confidence 45677899986 4577889999999 765544333332 23678999999763 344555543
No 195
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=44.82 E-value=20 Score=31.39 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=36.3
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.+. .+....+. ..++|++.|.|.+.
T Consensus 89 ~~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 89 DTNLYVTNLPR---------TITDDQLDTIFGK--YGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp TCEEEEESCCT---------TCCHHHHHHHHTS--SSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEeCCCC---------CCCHHHHHHhhhc--CCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 35678899986 3567889999998 7654 44544443 34579999999863
No 196
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=44.79 E-value=19 Score=32.53 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=39.3
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCC-C-CceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFR-G-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~-G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
-++.|-|+|. ..+...|++.|+. |.+. .+....++. | +.|+|.|.|.+. ..-..|+.
T Consensus 14 ~~l~V~nLp~---------~~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 73 (196)
T 1l3k_A 14 RKLFIGGLSF---------ETTDESLRSHFEQ--WGTLTDCVVMRDPNTKRSRGFGFVTYATV-EEVDAAMN 73 (196)
T ss_dssp GEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEEcCCCCCccceEEEEeCCH-HHHHHHHh
Confidence 4577899996 4577899999999 7654 455555543 3 689999999763 33344443
No 197
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=44.76 E-value=7.9 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=14.9
Q ss_pred CeeeccCCCCCCccccccHHHHhhh
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+|.|+.|+.. +..-..|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRAG---CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTEE---ESCHHHHHHHH
T ss_pred cCcCCCCCCcc---cCCHHHHHHHH
Confidence 57999999732 34455677774
No 198
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.70 E-value=12 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+.+|.|+.|... +..-..|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elv_A 6 SGLLYDCHICERK---FKNELDRDRHML 30 (36)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 4678999999733 444566777854
No 199
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=44.61 E-value=89 Score=28.50 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhhhhhccCCCCch----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc------chHHHHHH
Q 006597 416 ALALEIERLKGSLNVMKHMGDDGDI----EVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKS------NDELQDAR 485 (639)
Q Consensus 416 ~LELEi~qLkG~L~VmKhm~~~~d~----~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~s------ndELq~AR 485 (639)
...--|..|++.+.--.++..+... ++..--.+|...|..-+.+ +++|..+..+-|+.. .+||+. |
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~d---LeDLe~sI~ivE~np~kF~l~~~Ei~~-R 110 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWD---LEDLEETIGIVEANPGKFKLPAGDLQE-R 110 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCHHHHCCCHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCHHhcCCCHHHHHH-H
Confidence 3333444555555554444433222 3333334444444444444 466777777777654 677866 7
Q ss_pred HHHHHHHh
Q 006597 486 KELINALK 493 (639)
Q Consensus 486 k~lI~~l~ 493 (639)
+..|..++
T Consensus 111 r~fV~~~r 118 (130)
T 4dnd_A 111 KVFVERMR 118 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 200
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=44.51 E-value=23 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=35.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCC---CcccccccCC-CC-CceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN---PTRVHPLWNF-RG-HSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~---p~kv~~l~~~-~G-h~G~aVV~F~~d 181 (639)
-.+.|-|++. ..+...|++.|+. |. ...|+...+. .| ..||+.|.|.+.
T Consensus 56 ~~lfVgnLp~---------~~te~~L~~~F~~--~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 56 AAVYVGSFSW---------WTTDQQLIQVIRS--IGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHHH--TTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHH--HCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 4677888885 4577899999999 76 4555555553 23 579999999754
No 201
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.25 E-value=28 Score=28.29 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=36.4
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.+.|-|+|. ..+...|++.|+. |.++.-.+.....|. ++.|.|.+ -..-..|+.
T Consensus 10 ~l~V~nl~~---------~~t~~~l~~~F~~--~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPR---------GVDSAQLSEYFLA--FGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCT---------TCCHHHHHHHGGG--TSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCC---------CCCHHHHHHHHHh--cCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 456788885 3467889999999 876554433333444 99999976 444555555
No 202
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.16 E-value=1.7e+02 Score=31.56 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhc-----------hHHHHHHHHHHHH
Q 006597 248 MEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTET-----------SNSVEKLMEEKDR 296 (639)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~-----------s~sL~r~meEkd~ 296 (639)
|....+....+|.-|.|.-...+.+++.+...++.. +.+.++|+++..+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~ 95 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIR 95 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHH
Confidence 444555556666666666666677777777776653 5566666665433
No 203
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=44.13 E-value=18 Score=29.98 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=31.9
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
-++.|-|+|. ..+...|++.|+. |.++....+. .|++.|.|.+.-
T Consensus 12 ~~l~V~nl~~---------~~t~~~l~~~F~~--~G~i~~v~~~-----~~~afV~f~~~~ 56 (103)
T 2dgu_A 12 KVLFVRNLAN---------TVTEEILEKAFSQ--FGKLERVKKL-----KDYAFIHFDERD 56 (103)
T ss_dssp CCEEEECCCT---------TCCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESSHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEeCCHH
Confidence 3466889986 4577889999999 7664433332 469999998643
No 204
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.93 E-value=12 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=18.8
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|... +.....|..|-.
T Consensus 6 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2eos_A 6 SGGEKPYPCEICGTR---FRHLQTLKSHLR 32 (42)
T ss_dssp CSSSCCBCCSSSCCC---BSSHHHHHHHTT
T ss_pred cCCCCCEECCCCCCc---cCCHHHHHHHHH
Confidence 345678999999743 445566778854
No 205
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=43.74 E-value=24 Score=30.99 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=35.7
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCC--CCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.+ ..+....++ .-+.|+|.|.|.+.-
T Consensus 5 ~l~v~nLp~---------~~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNW---------DTTEDNLREYFGK--YGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCT---------TCCHHHHHHHHTT--TCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 567888886 4577889999999 765 445555543 347799999998754
No 206
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=43.69 E-value=12 Score=22.87 Aligned_cols=21 Identities=38% Similarity=0.755 Sum_probs=14.4
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+|.|+.|+.. +..-..|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 1rik_A 2 KFACPECPKR---FMRSDHLTLHI 22 (29)
T ss_dssp CEECSSSSCE---ESCSHHHHHHH
T ss_pred CccCCCCCch---hCCHHHHHHHH
Confidence 6999999733 34455677774
No 207
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.47 E-value=24 Score=30.21 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=32.5
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~ 180 (639)
.++.|-|+|. ..+...|++.|+. |.++....+-. ..|+|.|+|..
T Consensus 16 ~~l~V~nLp~---------~~te~~L~~~F~~--fG~V~~v~i~~---~kg~aFVef~~ 60 (104)
T 1wex_A 16 PVVHVRGLCE---------SVVEADLVEALEK--FGTICYVMMMP---FKRQALVEFEN 60 (104)
T ss_dssp SEEEEESCCS---------SCCHHHHHHHHTT--TSCEEEEEEET---TTTEEEEEESS
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--CCCEEEEEEEC---CCCEEEEEECC
Confidence 4677889985 4577889999999 87644333222 26899999986
No 208
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=43.46 E-value=2.1e+02 Score=31.77 Aligned_cols=89 Identities=16% Similarity=0.319 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006597 321 TDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDL 400 (639)
Q Consensus 321 ~e~ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~ 400 (639)
.++++|+..|...+.++.+=...++.++++ +.-++-|||.|..+.-.+ .+||+.+
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaq---------------------vSa~t~e~k~A~d~l~a~----~kek~~~ 403 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNN---------------------LSARTNEQKHANDALNAL----LKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 466788877777777766655555443332 122333444443332111 2567777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 006597 401 HNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (639)
Q Consensus 401 ~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm 434 (639)
.+.+-.+.+...++|+=+-|..+++..+..+--+
T Consensus 404 ~n~~a~~~~KiAE~KrK~dE~~aIKDAVkfTAdF 437 (602)
T 1cii_A 404 RNQLSGINQKIAEEKRKQDELKATKDAINFTTEF 437 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7888888888888877788888998888766443
No 209
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=43.40 E-value=11 Score=22.70 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=13.2
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+|.||.|+.. +.....|..|-
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK---FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC---CCTTTHHHHHH
T ss_pred CCcCCCCCcc---cCCHHHHHHHH
Confidence 6899999743 33344555663
No 210
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.36 E-value=1.2e+02 Score=32.99 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-cCccccc--------ceecC
Q 006597 437 DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRMG 507 (639)
Q Consensus 437 ~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~~~-~~~~~Ig--------iKrmG 507 (639)
++-.+++..+.+|.+++.+.++++. ++++....++-.+..+ ...+++| |++-|
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g 130 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEVE------------------ELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWG 130 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcC
Confidence 4456778888888888887777663 5555556666667766 4556666 99999
Q ss_pred C
Q 006597 508 E 508 (639)
Q Consensus 508 e 508 (639)
+
T Consensus 131 ~ 131 (455)
T 2dq0_A 131 K 131 (455)
T ss_dssp C
T ss_pred C
Confidence 7
No 211
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.17 E-value=65 Score=27.46 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 006597 404 IIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELD 461 (639)
Q Consensus 404 il~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~ 461 (639)
+++|..||+ .|.-||.+|+|++++.-| .|+.+.+...+-..+|+
T Consensus 22 ~~~Lq~Ql~---~Lq~Ev~~LRGqiE~~~~-----------~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 22 LTQLQQQLS---DNQSDIDSLRGQIQENQY-----------QLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 456666665 688899999999998777 36666666666665553
No 212
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=42.94 E-value=24 Score=33.52 Aligned_cols=48 Identities=17% Similarity=0.062 Sum_probs=34.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+.-||.+..+..+.. ..|++.|+|.+.
T Consensus 152 ~~l~V~nlp~---------~~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~ 199 (229)
T 2adc_A 152 ATLHLSNIPP---------SVSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 199 (229)
T ss_dssp SEEEEECCCT---------TCCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSH
T ss_pred CEEEEeCCCc---------cCCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCH
Confidence 6778889986 44678999999994443445554432 368999999773
No 213
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.77 E-value=9.1 Score=25.10 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=17.2
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +..-..|..|-.
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (37)
T 2elo_A 5 SSGRSYSCPVCEKS---FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCCCEETTTTEE---CSSHHHHHHHHH
T ss_pred CCCCCcCCCCCCCc---cCCHHHHHHHHH
Confidence 45678999999733 344556777743
No 214
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=42.77 E-value=26 Score=29.09 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=31.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
++.|-|++. ...+...|++.|+. |.++....+ +.|+|.|.|.+.-
T Consensus 24 ~l~V~nLp~--------~~~t~~~L~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~ 68 (97)
T 2xnq_A 24 RLFIGNLPL--------KNVSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDNPQ 68 (97)
T ss_dssp EEEEESCCS--------SCCCHHHHHHHHGG--GSCEEEEEE-----CSSEEEEEESSHH
T ss_pred EEEEeCCCc--------ccCCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECCHH
Confidence 455788872 03467889999999 866544434 3789999998743
No 215
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.69 E-value=2.2e+02 Score=26.85 Aligned_cols=72 Identities=25% Similarity=0.353 Sum_probs=42.6
Q ss_pred HHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 006597 346 KRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLK 425 (639)
Q Consensus 346 k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLk 425 (639)
.+....+..+.+++.|.+. |-.+=.+ .|. +.|-.-+++...+..+.-+|++||..+..+ |.-|.
T Consensus 72 ~~R~~aE~~~~~ie~ElEe-------LTasLFe--EAN----~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~---l~~lq 135 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVED-------LTASLFD--EAN----NMVADARKEKYAIEILNKRLTEQLREKDTL---LDTLT 135 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHH-------HHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3344445555566555554 2222223 233 344556788889999999999999988654 44444
Q ss_pred hhhhhhhc
Q 006597 426 GSLNVMKH 433 (639)
Q Consensus 426 G~L~VmKh 433 (639)
++|.-+|+
T Consensus 136 ~ql~~LK~ 143 (154)
T 2ocy_A 136 LQLKNLKK 143 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 216
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=42.69 E-value=1.6e+02 Score=25.28 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 006597 394 KKQKEDLHNRIIQLEKQLDAK----QALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQT 469 (639)
Q Consensus 394 krEke~~~~kil~LekqL~~k----Q~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~ 469 (639)
+.+++.+.++..++|.++... -++|-||..|+-+++++.- +=......+...+.+|++.+......|+-+.+
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~----eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED----EVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777776443 3466667776666665433 11122334455555555555544433333333
Q ss_pred H
Q 006597 470 L 470 (639)
Q Consensus 470 L 470 (639)
|
T Consensus 91 L 91 (101)
T 3u59_A 91 L 91 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=42.28 E-value=13 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=15.0
Q ss_pred eeeccCCCCCCccccccHHHHhhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+|.|+.|... +.....|..|-.
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEFR---SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSCC---CSCSHHHHHHHH
T ss_pred CccCCCCCCc---cCCHHHHHHHHH
Confidence 6899999733 445566777743
No 218
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.04 E-value=12 Score=24.92 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=16.4
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQH 62 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqH 62 (639)
.++.+|.|+.|+.. +..-..|..|
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~L~~H 28 (37)
T 2elm_A 5 SSGHLYYCSQCHYS---SITKNCLKRH 28 (37)
T ss_dssp SSSCEEECSSSSCE---EECHHHHHHH
T ss_pred CCCcCeECCCCCcc---cCCHHHHHHH
Confidence 35678999999733 3345567777
No 219
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.00 E-value=13 Score=25.07 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=18.6
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
.++.+|.|+.|+.. +.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (41)
T 2ept_A 6 SGQRVYECQECGKS---FRQKGSLTLHERI 32 (41)
T ss_dssp CCCCCEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCCCeECCCCCCC---cCCHHHHHHHHHH
Confidence 35678999999733 4455667788543
No 220
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=41.70 E-value=13 Score=22.75 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=14.6
Q ss_pred eeeccCCCCCCccccccHHHHhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQH 62 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqH 62 (639)
+|.|+.|+.. +.....|..|
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRA---FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCB---CSSSHHHHHH
T ss_pred CcCCcccCcc---cCChHHHHHH
Confidence 6899999733 4456678888
No 221
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=41.56 E-value=13 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=18.6
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 5 ~H~~~~~~~C~~C~k~---f~~~~~l~~H~~ 32 (42)
T 2epc_A 5 SSGGETPYLCGQCGKS---FTQRGSLAVHQR 32 (42)
T ss_dssp CCCSSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred cCCCCCCeECCCCCcc---cCCHHHHHHHhh
Confidence 3356788999999733 344556777754
No 222
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.15 E-value=20 Score=30.41 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=34.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHH---HHHHhcCCCCcc-cccccCCC-----CCceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLR---DELIRRGFNPTR-VHPLWNFR-----GHSGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~---d~f~~~GF~p~k-v~~l~~~~-----Gh~G~aVV~F~~dw 182 (639)
.-++.|-|+|. ..+...|+ +.|+. |.+.. +....+.. .++|+|.|.|.+.-
T Consensus 15 ~~~l~V~nLp~---------~~~~~~l~~~~~~F~~--~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~ 74 (111)
T 2cpi_A 15 KNLVFVVGLSQ---------RLADPEVLKRPEYFGK--FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSE 74 (111)
T ss_dssp SSCEEEEEECT---------TTCCHHHHHSTTTTTT--TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHHhhc--cCCEEEEEEecCCCcCccCCCCeEEEEEECcHH
Confidence 34677899986 34567788 88998 87643 44333332 45689999998643
No 223
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=40.91 E-value=14 Score=24.74 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
++.+|.|+.|+.. +..-..|..|-.
T Consensus 3 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 27 (39)
T 1njq_A 3 PPRSYTCSFCKRE---FRSAQALGGHMN 27 (39)
T ss_dssp CSSSEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCceECCCCCcc---cCCHHHHHHHHH
Confidence 4678999999733 344566777754
No 224
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.91 E-value=14 Score=24.85 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2ytb_A 7 GGEKPYRCDQCGKA---FSQKGSLIVHIR 32 (42)
T ss_dssp CSCCSBCCTTTTCC---BSSHHHHHTTGG
T ss_pred CCCCCeeCCCccch---hCCHHHHHHHHH
Confidence 45778999999743 445566778854
No 225
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=40.32 E-value=1.8e+02 Score=25.15 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhH----HHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 006597 395 KQKEDLHNRIIQLEKQLDA----KQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTL 470 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~----kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~L 470 (639)
.+++.+.++.-++|.++.. ..++|-||..|+-+++++.- +=......+.+....|++.+......|+-+.+|
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~----eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED----SRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777666543 23467777777777776543 111233445555555555555555444444444
No 226
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=40.07 E-value=44 Score=28.41 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHH-HhcCCCC-cccccccCCCCC-ceeEEEeeCCChhc
Q 006597 147 LRDEL-IRRGFNP-TRVHPLWNFRGH-SGCAVVEFHKDWPG 184 (639)
Q Consensus 147 L~d~f-~~~GF~p-~kv~~l~~~~Gh-~G~aVV~F~~dw~G 184 (639)
|++.| +. |.+ ..+....+..|+ .|++.|.|.+.-..
T Consensus 43 l~~~f~~~--~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 43 VFTEMEEK--YGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHHHHHHH--TCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred HHHHhhcc--CCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 33444 88 876 455555555554 89999999876554
No 227
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.96 E-value=15 Score=25.28 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=17.8
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-..+.+|.|+.|... +.....|..|-
T Consensus 6 ~h~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (44)
T 2eou_A 6 SGAAKTTSECQECGKI---FRHSSLLIEHQ 32 (44)
T ss_dssp SCSSSCCCCCTTTCCC---CSSHHHHHHHH
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHH
Confidence 3456788999999743 33445566664
No 228
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.83 E-value=14 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=19.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
-.++.+|.|+.|+.. +.....|..|...
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 7 GAGENPFKCSKCDRV---FTQRNYLVQHERT 34 (44)
T ss_dssp CSCCCSEECSSSSCE---ESSSHHHHHHHHH
T ss_pred cCCCCCeECCCCCch---hCCHHHHHHHhHh
Confidence 346778999999733 4455677777543
No 229
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=39.80 E-value=15 Score=25.35 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em9_A 6 SGTGEKPYNCKECGKS---FRWASCLLKHQR 33 (46)
T ss_dssp SCCCCCSEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCCCCcCeECCccccc---cCChHHHHHHHH
Confidence 3356789999999733 445566777754
No 230
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.59 E-value=68 Score=26.87 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 006597 403 RIIQLEKQLDAKQALALEIERLKGSLNVM 431 (639)
Q Consensus 403 kil~LekqL~~kQ~LELEi~qLkG~L~Vm 431 (639)
.|-.||++|++| +-+|++|+..|.-.
T Consensus 41 ~I~eLEk~L~ek---d~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQK---DELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 478888888765 67888888887533
No 231
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=39.42 E-value=29 Score=33.62 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=35.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhc
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPG 184 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~G 184 (639)
.++.|-|++. ..+...|++.|+. |.++....+. .+..|++.|+|.+.-..
T Consensus 208 ~~l~v~nl~~---------~~~~~~l~~~F~~--~G~i~~v~~~--~~~~g~afV~f~~~~~A 257 (282)
T 3pgw_A 208 HILFLTNLPE---------ETNELMLSMLFNQ--FPGFKEVRLV--PGRHDIAFVEFDNEVQA 257 (282)
T ss_pred CEEEEeCCCC---------cCCHHHHHHHHHh--cCCeEEEEEe--cCCCcEEEEEeCCHHHH
Confidence 5577888875 3467899999999 8765443333 34468999999875433
No 232
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.32 E-value=15 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2emb_A 6 SGHTRKRYECSKCQAT---FNLRKHLIQHQK 33 (44)
T ss_dssp CCCCCSSEECTTTCCE---ESCHHHHHHHGG
T ss_pred ccCCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3356788999999743 444566777753
No 233
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=39.31 E-value=33 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.6
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-CC-CceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-RG-HSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~G-h~G~aVV~F~~d 181 (639)
..+.|-|+|. ..+...|++.|+. |.+. .+....+. .| +.|++.|.|.+.
T Consensus 89 ~~l~v~nl~~---------~~t~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPK---------TMTQKELEQLFSQ--YGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCC---------cCCHHHHHHHHHh--cCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 4577889986 3467899999999 7654 45555443 33 579999999874
No 234
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.26 E-value=26 Score=30.63 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=33.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
+.++.|-|+|. ..+...|++.|+. |.++ .|..+.+ .|+|.|+|...
T Consensus 16 ~~~LfV~nLp~---------~vte~dL~~lF~~--fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 16 SRVIHIRKLPI---------DVTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CCEEEECSCCT---------TSCHHHHHHHHHH--HCCEEEEEEETT----TTEEEEEESSH
T ss_pred CCEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEcC----CCEEEEEECCH
Confidence 45677889985 4577889999999 8753 4444432 68999999864
No 235
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.97 E-value=15 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-....+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emi_A 7 GTGERHYECSECGKA---FIQKSTLSMHQR 33 (46)
T ss_dssp CSSCCCEECSSSCCE---ESSHHHHHHHHG
T ss_pred cCCCCCCCCCCCCcc---cCCHHHHHHHHh
Confidence 346778999999733 444566777743
No 236
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=38.96 E-value=15 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2el5_A 6 SGENPYECSECGKA---FNRKDQLISHQR 31 (42)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCCccCCCcChh---hCCHHHHHHHHH
Confidence 45678999999733 445566777754
No 237
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.89 E-value=16 Score=25.36 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|... +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enf_A 6 SGTGEKPYKCNECGKV---FTQNSHLVRHRG 33 (46)
T ss_dssp CCCCCCSCBCSSSCCB---CSSHHHHHHHHT
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3356788999999743 445566777753
No 238
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.75 E-value=16 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=19.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
-.+..+|.|+.|... +.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eq1_A 7 GTGEKPYKCNECGKA---FRAHSNLTTHQVI 34 (46)
T ss_dssp CCCSCCCCCTTTTCC---CSSHHHHHHHHTT
T ss_pred cCCCCCeECCcCChh---hCCHHHHHHHHHH
Confidence 346788999999743 4455667778543
No 239
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.69 E-value=15 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|... +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yts_A 6 SGTGEKPYICNECGKS---FIQKSHLNRHRR 33 (46)
T ss_dssp CCCSCCSEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCCCCcCEECCCCChh---hCChHHHHHHHH
Confidence 3356788999999733 445666777854
No 240
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.65 E-value=15 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=17.7
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eof_A 8 TGEKPYECNECQKA---FNTKSNLMVHQR 33 (44)
T ss_dssp SCCCSEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHhHHHHHHH
Confidence 45678999999733 444566777743
No 241
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=38.23 E-value=32 Score=28.16 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=30.9
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~ 180 (639)
++.|-|+|. . ..+...|++.|+. |.++....+ +.|+|.|.|.+
T Consensus 12 ~l~V~nlp~-~-------~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~ 54 (96)
T 2kvi_A 12 RLFIGNLPL-K-------NVSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDN 54 (96)
T ss_dssp EEEEESSTT-S-------CCCHHHHHHHHTT--TCCCCEEEE-----ETTEEEEEESC
T ss_pred EEEEeCCCc-c-------cCCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECC
Confidence 456788872 0 3467889999999 876554444 37899999986
No 242
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=38.22 E-value=2.5e+02 Score=26.59 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 006597 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALN 467 (639)
Q Consensus 388 kL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~ln 467 (639)
..+...+.|...+..+|.+|+..|..|.++-- .+...+..|+-++..-++.+..++.-|
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e---------------------~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTE---------------------RLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777888888888888888775422 123345555555666666666666666
Q ss_pred HHHH
Q 006597 468 QTLI 471 (639)
Q Consensus 468 q~Li 471 (639)
+.||
T Consensus 127 ~~LV 130 (152)
T 3a7p_A 127 SQLV 130 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 243
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.13 E-value=16 Score=25.30 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=17.9
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.+..+|.|+.|... +.....|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2en9_A 6 SGAGKKLFKCNECKKT---FTQSSSLTVHQ 32 (46)
T ss_dssp SCCSSCCCBCTTTCCB---CSSHHHHHHHH
T ss_pred CCCCCCCEECCccCcc---cCCHHHHHHHH
Confidence 3456788999999743 34455566664
No 244
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.11 E-value=18 Score=25.04 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-....+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2enh_A 6 SGTGEKPYECDVCRKA---FSHHASLTQHQR 33 (46)
T ss_dssp CCCCSSSCBCTTTCCB---CSSSHHHHHHGG
T ss_pred CcCCCCCcCCCCcCch---hCCHHHHHHHHH
Confidence 3456788999999743 445566777854
No 245
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.98 E-value=16 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=17.3
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|... +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eow_A 7 GTGEKPYKCNECGKA---FRARSSLAIHQ 32 (46)
T ss_dssp SCCCCCEECTTSCCE---ESSHHHHHHHH
T ss_pred CCCCCCeeccccCCh---hcCHHHHHHHH
Confidence 346788999999733 34455566664
No 246
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.84 E-value=3.9e+02 Score=28.21 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Q 006597 271 KHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLE--------SQKKELELRGE 342 (639)
Q Consensus 271 k~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~~~~~~i~~e~ekl~~eLe--------~k~~eL~~r~~ 342 (639)
++|-.|-.-|......+.+.-.++. ..+.-..++.......++..+.+-.+.+....++| +....+..+.+
T Consensus 339 rNLV~L~gyC~s~~~~~~~~~~~~~-~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 417 (487)
T 3oja_A 339 REIDALKEQYRTVIDQVTLRKQAKI-TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417 (487)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHH
T ss_pred cchhhHHHHhcChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHH
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006597 343 ELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAK 414 (639)
Q Consensus 343 ~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~k 414 (639)
+.+...++.+.+|.+...+.+. .-+.++..++|++.+...|.++.+++..+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 418 RYEEMYVEQQSVQNNAIRDWDM---------------------YQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhh---------------------hhhHHHHHHHHhhhhhhhhhhhhhhhHhc
No 247
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.84 E-value=13 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=20.4
Q ss_pred eEeecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 33 kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
.+-.+..+|.|+.|+.. +.....|..|-..
T Consensus 5 ~~h~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ysp_A 5 SSGTGEKPYKCEKCGKG---YNSKFNLDMHQKV 34 (46)
T ss_dssp CCCSSCCSEEETTTTEE---ESCHHHHHHHHTT
T ss_pred cCCCCCCCeECCCCCCc---cCCHHHHHHHHHh
Confidence 34456789999999733 4456677788543
No 248
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=37.76 E-value=27 Score=30.72 Aligned_cols=88 Identities=13% Similarity=-0.035 Sum_probs=50.5
Q ss_pred eEEEeecccccc-CCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHHHHhhhcCCC
Q 006597 123 TGIVVNIPTRRA-EDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYG 201 (639)
Q Consensus 123 mgII~Ni~t~e~-~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe~~~~G 201 (639)
+++|.|+.+.+. .|..+...--..|++.|+. |.++.-..+. .....|++.|.|.+.-. |.+--..+. |+
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k--fG~V~~v~i~-~~~~~G~~fV~f~~~e~----A~~Ai~~ln--G~- 78 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK--HGGVIHIYVD-KNSAQGNVYVKCPSIAA----AIAAVNALH--GR- 78 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT--TTCCSEEEEC-TTCTTCCEEEECSSHHH----HHHHHHHHT--TC-
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhc--cCCEEEEEEe-cCCCcEEEEEEECCHHH----HHHHHHHhC--CC-
Confidence 588999987322 3444444445678888998 8764333332 22347999999987532 322222222 11
Q ss_pred hhhhhhhccCCCcceeeeeccCCCCC
Q 006597 202 KKDWYASNQEKSGLYAWVARSDDYNL 227 (639)
Q Consensus 202 RkdW~~~~~~~~~LYGWvAradDy~~ 227 (639)
| ..|+.|+--.+..++|..
T Consensus 79 ---~----f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 79 ---W----FAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp ---E----ETTEECEEEEECHHHHHH
T ss_pred ---E----ECCEEEEEEEEcHHHHHH
Confidence 1 125677777777666643
No 249
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.73 E-value=17 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=17.7
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|... +.....|..|-.
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 31 (42)
T 2yte_A 6 SGEKPYSCAECKET---FSDNNRLVQHQK 31 (42)
T ss_dssp CSCCSCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 45678999999743 444556777754
No 250
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.70 E-value=16 Score=25.18 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=18.2
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|... +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytf_A 8 TGEKPFECSECQKA---FNTKSNLIVHQR 33 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCcCCCCCCcc---cCCHHHHHHHHH
Confidence 45778999999733 445566777754
No 251
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.63 E-value=18 Score=25.12 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=19.5
Q ss_pred eEeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 33 kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 5 ~~h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2elz_A 5 SSGSVEKPYKCEDCGKG---YNRRLNLDMHQR 33 (46)
T ss_dssp SCCCCCSSCBCSSSCCB---CSSHHHHHHHGG
T ss_pred CCCCCCCCeeCcccCch---hCCHHHHHHHHH
Confidence 34456789999999743 444566777744
No 252
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=37.57 E-value=19 Score=29.06 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=31.1
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
++.|-|+|. ..+...|++.|+. |....+.. + -+.|+|.|.|.+.
T Consensus 7 ~l~V~nLp~---------~~t~~~l~~~F~~--~~v~~~~i---~-~~~g~afV~f~~~ 50 (88)
T 1wg1_A 7 GILVKNLPQ---------DSNCQEVHDLLKD--YDLKYCYV---D-RNKRTAFVTLLNG 50 (88)
T ss_dssp CEEEESCCS---------SCCHHHHHHHTCS--SCCCCEEE---E-GGGTEEEECCSCH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhh--CCeEEEEE---e-CCCcEEEEEECCH
Confidence 466788886 4567889999998 83333332 1 5779999999753
No 253
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.55 E-value=16 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-..+.+|.|+.|... +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (44)
T 2epv_A 6 SGSGEKPYECNECGKA---FIWKSLLIVHER 33 (44)
T ss_dssp CCCCCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred ccCCCcCeECCCCCcc---cCchHHHHHHHh
Confidence 3356789999999733 445566777754
No 254
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.36 E-value=16 Score=24.84 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2en7_A 8 TGMKPYVCNECGKA---FRSKSYLIIHTR 33 (44)
T ss_dssp SSSSSSCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCCcCeECCCCCCc---cCCHHHHHHHhh
Confidence 45778999999743 445566777754
No 255
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.17 E-value=19 Score=24.87 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emg_A 6 SGTGENPFICSECGKV---FTHKTNLIIHQK 33 (46)
T ss_dssp CCCSCCSCBCTTTCCB---CSSHHHHHHHHT
T ss_pred CCCCCCCEECCccCcc---cCCHHHHHHHHH
Confidence 3356778999999743 445566777854
No 256
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.09 E-value=16 Score=25.26 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep3_A 8 TGEKPYRCAECGKA---FTDRSNLFTHQK 33 (46)
T ss_dssp SCCCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHH
Confidence 45778999999733 445566777854
No 257
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=37.01 E-value=20 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=17.3
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.||.|+.. +.....|..|-
T Consensus 5 h~~~k~~~C~~C~k~---f~~~~~l~~H~ 30 (66)
T 2drp_A 5 KEGEHTYRCKVCSRV---YTHISNFCRHY 30 (66)
T ss_dssp EEETTEEECTTTCCE---ESSHHHHHHHH
T ss_pred cCCCcceECCCCcch---hCCHHHHHHHH
Confidence 356789999999733 33455666664
No 258
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.51 E-value=18 Score=25.14 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-..+.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2ytp_A 6 SGTGERHYECSECGKA---FARKSTLIMHQR 33 (46)
T ss_dssp SSCCCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CcCCCCCeECCcCCcc---cCCHHHHHHHHH
Confidence 3356789999999733 445566777854
No 259
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.29 E-value=18 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=18.7
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2epw_A 7 GTGEKPCKCTECGKA---FCWKSQLIMHQR 33 (46)
T ss_dssp CCCCCSEECSSSCCE---ESSSHHHHHHHH
T ss_pred CCCCCCeeCCCCCCc---cCCHHHHHHHHH
Confidence 346678999999733 455667777754
No 260
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=36.21 E-value=32 Score=33.39 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCC---CcccccccCC-CC-CceeEEEeeCCChhchHhHHH
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFN---PTRVHPLWNF-RG-HSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~---p~kv~~l~~~-~G-h~G~aVV~F~~dw~Gf~nA~~ 190 (639)
..+.|-|++. ..+...|++.|+. |. ...|+.+.+. .| ..||+.|.|.+.-. -..|+.
T Consensus 69 ~~lfVgnL~~---------~~te~~L~~~F~~--~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 69 IALYIGNLTW---------WTTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp CEEEEESCCT---------TCCHHHHHHHHHT--TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred cEEEEeCCCC---------CCCHHHHHHHHHH--HCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 3567889886 3467889999999 75 5666666664 33 57999999987643 344544
No 261
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.20 E-value=18 Score=25.23 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=19.1
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-..+.+|.|+.|... +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eon_A 7 GTGEKPYKCQVCGKA---FRVSSHLVQHHS 33 (46)
T ss_dssp CSSCCSCBCSSSCCB---CSSHHHHHHHTT
T ss_pred CCCCcccCCCCCCcc---cCcHHHHHHHHH
Confidence 346788999999733 445667888854
No 262
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.20 E-value=18 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=16.7
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.++.+|.|+.|... +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2en3_A 8 TGEKPFQCKECGMN---FSWSCSLFKHL 32 (46)
T ss_dssp CCCCSEECSSSCCE---ESSSHHHHHHH
T ss_pred CCCCCeeCcccChh---hCCHHHHHHHH
Confidence 45778999999733 34455566663
No 263
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=36.09 E-value=19 Score=24.93 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=17.9
Q ss_pred eEeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 33 kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
++-.++.+|.|+.|+.. +..-..|..|-
T Consensus 5 ~~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ely_A 5 SSGTGEKPFKCVECGKG---FSRRSALNVHH 32 (46)
T ss_dssp CCCCCCCSBCCSSSCCC---BSSTTHHHHHH
T ss_pred CCCCCCCCcccCccCcc---cCCHHHHHHHH
Confidence 34456789999999743 33444566664
No 264
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.01 E-value=17 Score=25.11 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=17.4
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|... +.....|..|-
T Consensus 7 H~~~~~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2em3_A 7 GTGEKPYECKVCSKA---FTQKAHLAQHQ 32 (46)
T ss_dssp CSSCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCcCeECCCCCcc---cCCHHHHHHHH
Confidence 346788999999733 34455566664
No 265
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.98 E-value=19 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=18.0
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-....+|.|+.|... +..-..|..|-
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2eom_A 6 SGHGERGHRCSDCGKF---FLQASNFIQHR 32 (46)
T ss_dssp CCCCCSSCCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCCCcCCCCCCCe---eCChHHHHHHH
Confidence 3346788999999743 34455666674
No 266
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.90 E-value=19 Score=24.93 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=18.3
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|... +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yth_A 7 GSGEKPFQCEECGKR---FTQNSHLHSHQR 33 (46)
T ss_dssp CCCSSSBCCSSSCCC---BSSHHHHHHHGG
T ss_pred CCCCcCCCCCCCCcc---cCCHHHHHHHHH
Confidence 346788999999743 444556777743
No 267
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.79 E-value=17 Score=25.08 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=17.7
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytj_A 8 TGEKPYICAECGKA---FTIRSNLIKHQK 33 (46)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCcCeECCCCChh---hCCHHHHHHHHH
Confidence 45678999999743 444556777743
No 268
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.75 E-value=18 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yrj_A 6 SGTGEKPYRCGECGKA---FAQKANLTQHQR 33 (46)
T ss_dssp CCCCCCCEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCCCeECCCCCCc---cCCHHHHHHHHH
Confidence 3356788999999733 445566777754
No 269
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.63 E-value=18 Score=24.89 Aligned_cols=26 Identities=27% Similarity=0.623 Sum_probs=18.1
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eme_A 8 SGEKPYVCDYCGKA---FGLSAELVRHQR 33 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred CCCCCeECCCCChh---hCCHHHHHHHHH
Confidence 45678999999733 444566777754
No 270
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.53 E-value=26 Score=29.88 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=32.4
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
.++.|-|+|. ..+...|++.|+. |..+ .|..+. + .|+|.|+|...
T Consensus 16 ~~l~V~nLp~---------~~te~~L~~~F~~--fG~v~~v~i~~---~-kg~aFVef~~~ 61 (101)
T 2cq1_A 16 RVLHIRKLPG---------EVTETEVIALGLP--FGKVTNILMLK---G-KNQAFLELATE 61 (101)
T ss_dssp SEEEEESCCT---------TCCHHHHHHTTTT--TSCEEEEEEET---T-TTEEEEEESSH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEEC---C-CCEEEEEECCH
Confidence 4567789985 4577889999998 8654 333332 2 78999999874
No 271
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=35.50 E-value=39 Score=30.91 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=35.1
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC-C-CCceeEEEeeCC
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF-R-GHSGCAVVEFHK 180 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~-~-Gh~G~aVV~F~~ 180 (639)
-++.|-|++. ..+...|++.|+. |.++ .++.+.++ . -+.|++.|.|.+
T Consensus 126 ~~l~v~nlp~---------~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQ---------DLSDDDIKSVFEA--FGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCT---------TCCHHHHHHHHTT--SSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCC---------cCCHHHHHHHHhc--cCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 4677889986 3467899999999 8654 45555543 2 358999999976
No 272
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.45 E-value=19 Score=24.77 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=18.3
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eop_A 8 TGEKPHECRECGKS---FSFNSQLIVHQR 33 (46)
T ss_dssp CCCCSCBCTTTCCB---CSSHHHHHHHHT
T ss_pred CCCCCeeCCCCCch---hCCHHHHHHHHH
Confidence 46778999999733 445566777753
No 273
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.24 E-value=15 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=15.6
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-..+.+|.||.|... +.....|.+|-
T Consensus 8 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 34 (72)
T 1x6e_A 8 IHSGEKPYGCVECGKA---FSRSSILVQHQ 34 (72)
T ss_dssp TTTTCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred ccCCCCCccCCCCCCc---cCCHHHHHHHH
Confidence 3345677888888632 33344555553
No 274
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.18 E-value=15 Score=25.48 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=17.5
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.+..+|.|+.|+.. +..-..|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eoz_A 6 SGTGEKPYSCNVCGKA---FVLSAHLNQHL 32 (46)
T ss_dssp CCSSCCSEEETTTTEE---ESSHHHHHHHH
T ss_pred cCCCCCCeECcccChh---hCCHHHHHHHH
Confidence 3346778999999733 34445566664
No 275
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.17 E-value=21 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=17.7
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.+..+|.|+.|+.. +.....|..|-
T Consensus 6 ~h~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2em8_A 6 SGSGEKPYKCVECGKG---YKRRLDLDFHQ 32 (46)
T ss_dssp CCCSCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCCCeECcccCch---hCCHHHHHHHH
Confidence 3456789999999733 33445566664
No 276
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=35.16 E-value=41 Score=30.77 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=36.2
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKD 181 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~d 181 (639)
..++.|-|+|. ..+...|++.|+. |.+. .+..+.+. .-+.|+|.|.|.+.
T Consensus 28 ~~~l~V~nLp~---------~~t~~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 28 MSRVYVGSIYY---------ELGEDTIRQAFAP--FGPIKSIDMSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp HTEEEEECCCT---------TCCHHHHHHHHGG--GSCEEEEEECCC-CC-CCCSEEEEEESSH
T ss_pred CCEEEEECCCC---------CCCHHHHHHHHHh--CCCEEEEEEeecCCCCccCceEEEEeCCH
Confidence 34688999996 4577899999999 7653 45555543 23789999999754
No 277
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.06 E-value=21 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=17.5
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eov_A 7 GTGEKPYKCSDCGKS---FTWKSRLRIHQ 32 (46)
T ss_dssp CSSCCSCBCSSSCCB---CSSHHHHHHHH
T ss_pred CCCCCCccCCccChh---hCCHHHHHHHH
Confidence 345678999999743 34455666774
No 278
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=35.06 E-value=45 Score=29.06 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=25.1
Q ss_pred cCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 142 ESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 142 ~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
.+...|++.|+. |.++.-..+- -..|+|.|.|.+.
T Consensus 49 ~te~~L~~~F~~--~G~I~~v~i~---~~kg~aFV~f~~~ 83 (121)
T 2bz2_A 49 MTPTLLRGAFSP--FGNIIDLSMD---PPRNCAFVTYEKM 83 (121)
T ss_dssp CCHHHHHHHHST--TCCCSCEEEE---TTTTEEEEECSSH
T ss_pred CCHHHHHHHHHc--cCCEEEEEEe---CCCCEEEEEECCH
Confidence 367889999999 8765433331 4678999999763
No 279
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.03 E-value=19 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=17.4
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2yto_A 7 GTGEKPYKCSDCGKA---FTRKSGLHIHQ 32 (46)
T ss_dssp CCSCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred cCCCCCEECcccCCc---cCCHhHHHHHH
Confidence 346788999999733 34455566664
No 280
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.01 E-value=21 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (47)
T 2epx_A 6 SGTGKKPYECIECGKA---FIQNTSLIRHWR 33 (47)
T ss_dssp CCCCCCSBCCSSSCCC---BSSHHHHHHHHT
T ss_pred ccCCCCCEECCccCch---hCChHHHHHHhH
Confidence 3356788999999743 445667778854
No 281
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.94 E-value=19 Score=21.54 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=14.1
Q ss_pred eeeccCCCCCCccccccHHHHhhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+|.|+.|+.. +.....|..|-.
T Consensus 1 ~~~C~~C~k~---f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCERS---FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCCB---CSSHHHHHHHGG
T ss_pred CccCCCCCCc---CCCHHHHHHHHH
Confidence 4889999733 344566777753
No 282
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.90 E-value=20 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=17.4
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2em2_A 7 GSGEKPFKCKECGKA---FRQNIHLASHL 32 (46)
T ss_dssp CCCCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCCEECCcCCch---hCCHHHHHHHH
Confidence 356788999999733 33445566664
No 283
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=34.88 E-value=30 Score=33.53 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=37.9
Q ss_pred cceEEEeeccccccCCCccccc-CchhHHHHHHhcCCCC-cccccccCCCCC-ceeEEEeeCCCh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGE-SGSKLRDELIRRGFNP-TRVHPLWNFRGH-SGCAVVEFHKDW 182 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~-s~~~L~d~f~~~GF~p-~kv~~l~~~~Gh-~G~aVV~F~~dw 182 (639)
+.++.|-|+|. .. +...|++.|+. |.+ ..+....++.|+ +|++.|.|.+.-
T Consensus 184 ~~~l~v~nlp~---------~~~~~~~l~~~f~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 184 SRCLCVDRLPP---------GFNDVDALCRALSA--VHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp CSEEEEECCCT---------TCCCHHHHHHHTCS--SSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred ccEEEEecCCc---------ccCCHHHHHHHhhC--CCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 45677889986 32 45889999998 775 456666666674 899999998654
No 284
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.84 E-value=17 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|... +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2yti_A 7 GTGEKPYKCNECGKV---FTQNSHLARHRG 33 (46)
T ss_dssp CSCCCTTCCSSSCCC---CSSHHHHHHHHT
T ss_pred CCCCcCeECCCCCcc---cCChhHHHHHhH
Confidence 345778999999743 444566777753
No 285
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.69 E-value=19 Score=24.96 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=17.8
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-....+|.|+.|+.. +.....|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2em4_A 6 SGTGQRPYECIECGKA---FKTKSSLICHR 32 (46)
T ss_dssp CCCCSSSEECSSSCCE---ESSHHHHHHHH
T ss_pred ccCCCcCcCCCCCCCc---cCCHHHHHHHH
Confidence 3356788999999733 34455566664
No 286
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.64 E-value=19 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-..+.+|.|+.|... +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoh_A 7 GSGKKPYECKECRKT---FIQIGHLNQHKR 33 (46)
T ss_dssp CCCSCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred cCCCCCcCCCCcCch---hCCHHHHHHHHH
Confidence 345678999999743 344556777754
No 287
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.62 E-value=20 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|... +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoy_A 6 SGQKEKCFKCNKCEKT---FSCSKYLTQHER 33 (46)
T ss_dssp CCCCSCCEECSSSCCE---ESSSHHHHHHHT
T ss_pred ccCCCCCEECcCCCCc---CCCHHHHHHHHH
Confidence 3346789999999733 445667778854
No 288
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.42 E-value=21 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=19.0
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|... +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em6_A 6 SGMGEKCYKCDVCGKE---FSQSSHLQTHQR 33 (46)
T ss_dssp CCCCCCCCBCSSSCCB---CSSHHHHHHHHT
T ss_pred ccCCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 3356788999999733 445566777753
No 289
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=34.12 E-value=18 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.259 Sum_probs=12.0
Q ss_pred CCeeeccCCCCCCccccccHHHHhhh
Q 006597 38 DEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 38 ~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+.+|.||.|+.. +.....|..|-
T Consensus 2 ~~~~~C~~C~~~---f~~~~~l~~H~ 24 (57)
T 3uk3_C 2 SSSRECSYCGKF---FRSNYYLNIHL 24 (57)
T ss_dssp ---CBCTTTCCB---CSCHHHHHHHH
T ss_pred CCCccCCCCcch---hCChHHHHHHH
Confidence 467889999733 33344555553
No 290
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.09 E-value=18 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=17.9
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|... +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq2_A 8 TGGKPYQCNECGKA---FSQTSKLARHQR 33 (46)
T ss_dssp SSSCSSSCCSSCCC---CSSHHHHHHHGG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 46778999999743 444566777743
No 291
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.72 E-value=21 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2ytn_A 6 SGTGKKPYKCNECGKV---FTQNSHLARHRG 33 (46)
T ss_dssp CCSCCSSCBCTTTCCB---CSSHHHHHHHGG
T ss_pred CCCCCcCeECCCCCCe---eCCHHHHHHHhh
Confidence 3356789999999743 445566777754
No 292
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.68 E-value=20 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep1_A 7 GTGEKPYECSDCGKS---FIKKSQLHVHQR 33 (46)
T ss_dssp CSSCCSSCCSSSCCC---CSSHHHHHHHHG
T ss_pred CCCCCCcCCCCCCch---hCCHHHHHHHHH
Confidence 346778999999743 344556777753
No 293
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.57 E-value=20 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=18.7
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em7_A 7 GTGEKPYKCEECGKG---FICRRDLYTHHM 33 (46)
T ss_dssp SSCCCSEECSSSCCE---ESCHHHHHHHGG
T ss_pred CCCCcCccCCCccch---hCCHHHHHHHHH
Confidence 345778999999733 445667777854
No 294
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.53 E-value=22 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=18.1
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.++.+|.|+.|+.. +.....|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2yu8_A 6 SGTGEKPYKCNECGKV---FTQNSHLARHR 32 (46)
T ss_dssp CCCCCSSEECSSSCCE---ESSSHHHHHHT
T ss_pred CCCCCCCeECCcCCch---hCCHHHHHHHH
Confidence 3456789999999733 44455666663
No 295
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.41 E-value=20 Score=24.72 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=16.6
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.++.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emh_A 8 TGERPYICTVCGKA---FTDRSNLIKHQ 32 (46)
T ss_dssp SCCCSEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCCcCCCCCCch---hCCHHHHHHHH
Confidence 45788999999733 33445566663
No 296
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.33 E-value=16 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
..+.+|.|+.|+.. +.....|..|..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (45)
T 2epu_A 8 TGQKPFECTHCGKS---FRAKGNLVTHQR 33 (45)
T ss_dssp CSCCSEEETTTTEE---ESSHHHHHHHHT
T ss_pred CCCcCccCCCCCCc---cCChHHHHHHHH
Confidence 45778999999733 445566778854
No 297
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.31 E-value=20 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=17.8
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoq_A 8 TGEKPFKCDICGKS---FCGRSRLNRHSM 33 (46)
T ss_dssp SSSCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCcCCCcCCch---hCCHHHHHHHHH
Confidence 45678999999743 445566777743
No 298
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.27 E-value=21 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=16.8
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2eor_A 7 GTGEKPYNCEECGKA---FIHDSQLQEHQ 32 (46)
T ss_dssp SSCCCSEECTTTCCE---ESSHHHHHHHH
T ss_pred cCCCcCccCCCCCCC---cCCHHHHHHHH
Confidence 346778999999733 33445566663
No 299
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.25 E-value=1.5e+02 Score=26.94 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhH
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIE-----------RLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDL 463 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~-----------qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~ 463 (639)
|--++.+|.-.-|+.||-+-|.-=++-+ -|+..|...|.=+-.--.++...|..|+.+|++...+++.+
T Consensus 18 rAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 18 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 006597 464 EALNQTLIIR 473 (639)
Q Consensus 464 e~lnq~Li~k 473 (639)
-.-|+.|-++
T Consensus 98 r~~~~~~~~r 107 (121)
T 3mq7_A 98 RRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HhhchhhhhH
No 300
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.20 E-value=21 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=18.5
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2enc_A 7 GSGEKPFKCEECGKG---FYTNSQCYSHQR 33 (46)
T ss_dssp CCCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCc---CCChHHHHHHHH
Confidence 346788999999733 445566777743
No 301
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.12 E-value=20 Score=24.71 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.6
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep2_A 7 GTGEKPYECSICGKS---FTKKSQLHVHQQ 33 (46)
T ss_dssp SSCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCcCcCCCCCCcc---cCCHHHHHHHHH
Confidence 346788999999733 445566777754
No 302
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.12 E-value=22 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=16.7
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+..+|.|+.|... +.....|..|-
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 30 (43)
T 2yrm_A 6 SGNGAFFCNECDCR---FSEEASLKRHT 30 (43)
T ss_dssp SSSCCBCCSSSCCC---BSSHHHHHHHH
T ss_pred CCCCCEECCCCCCe---eCChHHHHHHH
Confidence 35678999999743 33445566664
No 303
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.06 E-value=24 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=19.2
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2epz_A 6 SGTGEKPFDCIDCGKA---FSDHIGLNQHRR 33 (46)
T ss_dssp SCCCCCSBCCTTTCCC---BSSHHHHHHHHT
T ss_pred CcCCCCCeECCCCCce---eCCHHHHHHHHH
Confidence 3456788999999743 445566777754
No 304
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.00 E-value=21 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=16.4
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
....+|.|+.|... +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emz_A 8 SGERPFKCNECGKG---FGRRSHLAGHL 32 (46)
T ss_dssp SCCCSCCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHH
Confidence 45678999999743 33445566663
No 305
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.91 E-value=17 Score=24.95 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (44)
T 2eox_A 6 SGTDSKSYNCNECGKA---FTRIFHLTRHQK 33 (44)
T ss_dssp CCCCCCCEEETTTTEE---ESSSHHHHTTHH
T ss_pred CCCCCCCeECcccCcc---cCCHHHHHHHHH
Confidence 3356789999999733 445566777743
No 306
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.79 E-value=21 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=18.1
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eq0_A 8 TGEKPYKCHECGKV---FRRNSHLARHQL 33 (46)
T ss_dssp TCCCCEECTTTCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHH
Confidence 45778999999733 445566777754
No 307
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.76 E-value=15 Score=25.02 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=18.3
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eoj_A 8 TGENPYECCECGKV---FSRKDQLVSHQK 33 (44)
T ss_dssp SSCCSCEETTTTEE---CSSHHHHHHHHT
T ss_pred CCCcCeeCCCCCCc---cCCHHHHHHHHH
Confidence 45778999999733 445566777854
No 308
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.56 E-value=15 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=18.1
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq3_A 8 TGEKPYECNQCGKA---FSVRSSLTTHQA 33 (46)
T ss_dssp CCCCSSEETTTTEE---CSSHHHHHHHHT
T ss_pred CCCCCeECCCCChh---hCCHHHHHHHHH
Confidence 45778999999733 445566777754
No 309
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=32.56 E-value=23 Score=24.47 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=17.3
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.+..+|.|+.|... +..-..|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emj_A 6 SGTGEKPFECAECGKS---FSISSQLATHQ 32 (46)
T ss_dssp CCCCCCSEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCCCCCEECCCCCcc---cCCHHHHHHHH
Confidence 3346778999999733 33445566664
No 310
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=32.55 E-value=21 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+..+|.|+.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2el4_A 8 TGVKPYGCSQCAKT---FSLKSQLIVHQR 33 (46)
T ss_dssp CCCCSEECSSSSCE---ESSHHHHHHHGG
T ss_pred CCCCceECCCCCch---hCCHHHHHHHHH
Confidence 45778999999733 455667778854
No 311
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.45 E-value=22 Score=24.67 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em5_A 6 SGSSTKSHQCHECGRG---FTLKSHLNQHQR 33 (46)
T ss_dssp CCCCSCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCCCeECCcCCCc---cCCHHHHHHHHH
Confidence 3346788999999733 445667778853
No 312
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.42 E-value=23 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.472 Sum_probs=18.1
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.++.+|.|+.|+.. +.....|..|-
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2yso_A 6 SGSREKSHQCRECGEI---FFQYVSLIEHQ 32 (46)
T ss_dssp CSSCCCCEECTTTCCE---ESSHHHHHHHH
T ss_pred ccCCCCCEEccccChh---hCCHHHHHHHH
Confidence 3346778999999743 44455677774
No 313
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=32.31 E-value=20 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=17.7
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+.+|.|+.|... +.....|..|-.
T Consensus 4 ~~kp~~C~~C~k~---F~~~~~L~~H~~ 28 (48)
T 3iuf_A 4 RDKPYACDICGKR---YKNRPGLSYHYA 28 (48)
T ss_dssp TTSCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCcCEECCCcCcc---cCCHHHHHHHhh
Confidence 5678999999733 445566778855
No 314
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=32.27 E-value=22 Score=27.67 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=13.8
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
++.+|.|+.|... +.....|..|-
T Consensus 1 SEKpy~C~~C~k~---F~~~~~L~~H~ 24 (60)
T 4gzn_C 1 SERPFFCNFCGKT---YRDASGLSRHR 24 (60)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCE---eCCHHHHHHHH
Confidence 4567888888632 33344555553
No 315
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=32.26 E-value=13 Score=32.04 Aligned_cols=14 Identities=36% Similarity=1.089 Sum_probs=11.2
Q ss_pred ecCCeeeccCCCCC
Q 006597 36 ISDEAFTCPYCPKK 49 (639)
Q Consensus 36 ~~~~~~~CP~C~gk 49 (639)
..+.+|.||||...
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 45789999999754
No 316
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.17 E-value=22 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=17.0
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.++.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2eoo_A 8 SGERPYGCNECGKN---FGRHSHLIEHL 32 (46)
T ss_dssp SCCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCEEccccCcc---cCCHHHHHHHH
Confidence 45778999999733 44455566664
No 317
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.17 E-value=22 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=18.2
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.||.|+.. +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ene_A 8 TGEKPYKCNECGKV---FRHNSYLSRHQR 33 (46)
T ss_dssp CCSSSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCeECCCCCch---hCChHHHHHHHh
Confidence 45778999999733 444566777754
No 318
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.91 E-value=2.2e+02 Score=26.11 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 006597 328 LQLESQKKELE 338 (639)
Q Consensus 328 ~eLe~k~~eL~ 338 (639)
..|+.+|++|.
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34445555444
No 319
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=31.86 E-value=2.2e+02 Score=31.32 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=44.0
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 231 IGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQL 310 (639)
Q Consensus 231 iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~ 310 (639)
|-.||.|+ .-=|....+....+|..++|.=.....+++.|..+++.. ++....++.+.+.|..+|..++.
T Consensus 82 lad~L~ky------e~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~----q~~~~~n~~~~~~s~~mle~~~~ 151 (461)
T 3ghg_B 82 LQEALLQQ------ERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKR----QKQVKDNENVVNEYSSELEKHQL 151 (461)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH----HHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhc------ccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccc----cCCCCcchhHHHHHHHHHHHHHH
Confidence 55666665 333555556666666667666666667777776666543 34445556667777777766655
Q ss_pred H
Q 006597 311 S 311 (639)
Q Consensus 311 ~ 311 (639)
.
T Consensus 152 ~ 152 (461)
T 3ghg_B 152 Y 152 (461)
T ss_dssp H
T ss_pred H
Confidence 4
No 320
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.80 E-value=22 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=17.3
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +..-..|..|-
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytk_A 7 GSGEKPYKCNECGKV---FTQNSHLTNHW 32 (46)
T ss_dssp SSSSCSEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCCEeCCcCCCc---cCCHHHHHHHH
Confidence 346789999999733 34455566664
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=37.98 E-value=9.8 Score=32.39 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=36.5
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc---------cccccCCC--CCceeEEEeeCCChhchHhHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR---------VHPLWNFR--GHSGCAVVEFHKDWPGLHNAMS 190 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k---------v~~l~~~~--Gh~G~aVV~F~~dw~Gf~nA~~ 190 (639)
.+.|-|+|. ..+...|++.|+. |.+.. +....++. -..|+|.|.|.+.-.- ..|+.
T Consensus 9 ~l~V~nLp~---------~~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A-~~Ai~ 75 (116)
T 2lcw_A 9 TIFVQGLGE---------NVTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAID 75 (116)
Confidence 455778875 3456778999998 77655 44555433 3579999999875433 33443
No 322
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.61 E-value=22 Score=24.73 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=17.9
Q ss_pred eEeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 33 kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+-.+..+|.|+.|+.. +..-..|..|-
T Consensus 5 ~~h~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytm_A 5 SSGTGEKPYKCMECGKA---FGDNSSCTQHQ 32 (46)
T ss_dssp CCCSSCCSSSBTTTTBC---CSSHHHHHHHH
T ss_pred cCCCCCCCcCCCCCCch---hCCHHHHHHHH
Confidence 34456789999999733 33445566663
No 323
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.60 E-value=23 Score=24.22 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=16.8
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+..+|.|+.|+.. +.....|..|-
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 30 (44)
T 2emx_A 6 SGEKPFGCSCCEKA---FSSKSYLLVHQ 30 (44)
T ss_dssp SSCCCEECSSSSCE---ESSHHHHHHHH
T ss_pred CCCcCccCCCCCcc---cCCHHHHHHHH
Confidence 45678999999733 34455566664
No 324
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.58 E-value=25 Score=24.20 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=17.8
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.++.+|.|+.|+.. +..-..|..|-
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emy_A 6 SGTGENPYECHECGKA---FSRKYQLISHQ 32 (46)
T ss_dssp CCCSSCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCcCcCCCCCCcc---cCcHHHHHHHH
Confidence 3356789999999733 34455566664
No 325
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=31.56 E-value=49 Score=31.99 Aligned_cols=49 Identities=16% Similarity=0.032 Sum_probs=32.4
Q ss_pred eEEEeeccccccCCCcccccCchhHH----HHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLR----DELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~----d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
++.|-|++. ..+...|+ +.|+. |.++....+....-+.|++.|.|.+.-
T Consensus 11 ~l~V~nlp~---------~~~~~~l~~~L~~~F~~--~G~i~~v~~~~~~~~~g~afV~f~~~~ 63 (282)
T 3pgw_A 11 TIYINNLNE---------KIKKDELKKSLYAIFSQ--FGQILDILVSRSLKMRGQAFVIFKEVS 63 (282)
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHHhc--cCCeEEEEEcCCCCcceEEEEEECCHH
Confidence 466889886 34556655 78988 765443333334447799999997543
No 326
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.55 E-value=72 Score=27.50 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCCCCchHHHHHHHHHH
Q 006597 396 QKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL 450 (639)
Q Consensus 396 Eke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~~~d~~~~~ki~~l~ 450 (639)
+++.+..+|..|+.|.+ +|+.+|+++..+|. +.+....+++-|+.|+
T Consensus 2 ~~~~L~~~i~~L~~q~~---~L~~ei~~~~a~L~-----~~~~~~~~~~hI~~Lh 48 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKE---QLESSLQDALAKLK-----NRDAKQTVQKHIDLLH 48 (85)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCS-----SSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHH
Confidence 46778888999888765 78999999998885 2222233445566665
No 327
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.54 E-value=23 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eml_A 7 GTGEKPYECSVCGKA---FSHRQSLSVHQR 33 (46)
T ss_dssp CSSCCSEECSSSCCE---ESSHHHHHHHHG
T ss_pred cCCCCCeeCCCcCCc---cCCHHHHHHHHH
Confidence 346788999999733 444556777753
No 328
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=37.72 E-value=10 Score=23.29 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=14.1
Q ss_pred CeeeccCCCCCCccccccHHHHhhh
Q 006597 39 EAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 39 ~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+|.|+.|+.. +.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (30)
T 2lvr_A 2 KPYVCIHCQRQ---FADPGALQRHV 23 (30)
Confidence 47999999733 33444566664
No 329
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.49 E-value=24 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=18.8
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2en8_A 7 GSGEKSHTCDECGKN---FCYISALRIHQR 33 (46)
T ss_dssp CCCCSSEECTTTCCE---ESSHHHHHHHHT
T ss_pred CCCCCCeECCCcCcc---cCCHHHHHHHHH
Confidence 346788999999733 445566777854
No 330
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.27 E-value=41 Score=29.89 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=34.2
Q ss_pred ceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCCh
Q 006597 122 WTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 122 wmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
.++.|-|+|. ..+...|++.|+. |.++ .|..+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~---------~vte~dL~~lF~~--fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPI---------DVTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCT---------TCCHHHHHHHHTT--TSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCC---------CCCHHHHHHHHHh--cCCEEEEEEeCC----CCEEEEEECCHH
Confidence 4677889985 3567889999999 8754 4555543 689999998744
No 331
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.24 E-value=23 Score=24.43 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=18.8
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.+..+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytg_A 7 GTGEKPFKCGECGKS---YNQRVHLTQHQR 33 (46)
T ss_dssp CSSCCSEECTTTCCE---ESSSHHHHTTGG
T ss_pred CCCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 346788999999733 445667777754
No 332
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.17 E-value=22 Score=24.59 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=19.3
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
+-.++.+|.|+.|+.. +..-..|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2emf_A 6 SGTGGKHFECTECGKA---FTRKSTLSMHQKI 34 (46)
T ss_dssp SSSSSCCEECSSSCCE---ESCHHHHHHHGGG
T ss_pred ccCCCCCeECCCCCch---hCCHHHHHHHHHH
Confidence 3346788999999733 4455667777543
No 333
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=31.15 E-value=23 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=17.2
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +..-..|..|-
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~ 32 (46)
T 2emk_A 7 GTGEKPYECKECGKA---FSQTTHLIQHQ 32 (46)
T ss_dssp CSSSCSCBCSSSCCB---CSCHHHHHHHH
T ss_pred cCCCCceECCCCCch---hCCHHHHHHHH
Confidence 346778999999743 34445566664
No 334
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.86 E-value=25 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=19.7
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
+-.++.+|.|+.|+.. +.....|..|...
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytq_A 6 SGAGEKPYGCSECGKA---FSSKSYLIIHMRT 34 (46)
T ss_dssp CSSCCCSCBCSSSCCB---CSCHHHHHHHHTT
T ss_pred CcCCCCCcCCCccChh---hCChHHHHHHHHH
Confidence 3356788999999743 4455667788543
No 335
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.79 E-value=1.8e+02 Score=24.43 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH
Q 006597 442 VLQKMETVLKDLREKEGELDDLEAL 466 (639)
Q Consensus 442 ~~~ki~~l~~~L~ek~~el~~~e~l 466 (639)
+...++++..+|...++....|+++
T Consensus 61 l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 61 VLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666655543
No 336
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.75 E-value=24 Score=24.29 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=17.3
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emm_A 7 GTGERPHKCNECGKS---FIQSAHLIQHQ 32 (46)
T ss_dssp SSCCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred cCCCCCeeCCCCChh---hCCHHHHHHHH
Confidence 346788999999733 34455566664
No 337
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=30.74 E-value=50 Score=29.30 Aligned_cols=48 Identities=17% Similarity=0.005 Sum_probs=30.5
Q ss_pred eEEEeeccccccCCCcccccCchhH----HHHHHhcCCCCcccccccCCCCCceeEEEeeCCC
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKL----RDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKD 181 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L----~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~d 181 (639)
++.|-|++. ..+...| .+.|+. |.++....+-......|+|.|.|.+.
T Consensus 31 ~LfV~nL~~---------~~~e~~L~~~L~~~F~~--~G~I~~v~i~~~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINP---------EVPKEKLQALLYALASS--QGDILDIVVDLSDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCT---------TSCHHHHHHHHHHHHHH--HSCEEEEEECCCCSSCCCEEEEESSH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHHHhcc--CCCeEEEEeccCCCcCCEEEEEECCH
Confidence 567889885 2244444 468999 87653322222335789999999864
No 338
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.70 E-value=22 Score=24.49 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=18.5
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|... +.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ep0_A 8 TGEKPYKCDVCHKS---FRYGSSLTVHQR 33 (46)
T ss_dssp TTCCSEECSSSCCE---ESSHHHHHHHHT
T ss_pred CCCCCeeCcccCcc---cCChHHHHHHHH
Confidence 46788999999733 445567778854
No 339
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.56 E-value=23 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.7
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eq4_A 6 SGTGEKLYNCKECGKS---FSRAPCLLKHER 33 (46)
T ss_dssp CSSCCCCCCBTTTTBC---CSCHHHHHHHHH
T ss_pred cCCCCCCeECCCCCCc---cCchHHHHHHHH
Confidence 3346778999999733 444556777754
No 340
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=30.49 E-value=32 Score=37.71 Aligned_cols=37 Identities=32% Similarity=0.341 Sum_probs=28.7
Q ss_pred cCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 142 ESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 142 ~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
-|-.+|.++|+. |.|+.-.+.|-..| -||||+|++.-
T Consensus 64 ~~~~~l~~y~~~--~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 64 ISENKFLKYLSQ--FGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp ---CHHHHHHGG--GSCCCCEEEECSSS--EEEEEECC---
T ss_pred CCHHHHHHHHHh--cCCcceEEEEccCC--eEEEEEeCCHH
Confidence 477899999999 99999999998888 59999999853
No 341
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.39 E-value=25 Score=22.77 Aligned_cols=22 Identities=36% Similarity=0.778 Sum_probs=14.5
Q ss_pred eeeccCCCCCCccccccHHHHhhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+|.|+.|+.. +.....|..|-.
T Consensus 2 p~~C~~C~k~---F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPKR---FMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCCC---CSSHHHHHHHHH
T ss_pred cccCCCCCch---hCCHHHHHHHHH
Confidence 6899999743 344556666643
No 342
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=30.36 E-value=24 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=17.2
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+..+|.||.|... +.....|..|-
T Consensus 27 ~~~~~~C~~C~~~---f~~~~~l~~H~ 50 (60)
T 2adr_A 27 NEKPYPCGLCNRA---FTRRDLLIRHA 50 (60)
T ss_dssp SSCSEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHH
Confidence 4568999999733 44566788884
No 343
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=30.33 E-value=24 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=18.6
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
.+..+|.||.|... +.....|..|-..
T Consensus 25 ~~~~~~~C~~C~~~---f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 25 TDVRPYHCTYCNFS---FKTKGNLTKHMKS 51 (57)
T ss_dssp SSCCCEECSSSSCE---ESSHHHHHHHHHS
T ss_pred CCCCCccCCCCCch---hcCHHHHHHHHHH
Confidence 34678999999733 4456678888644
No 344
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=30.32 E-value=3e+02 Score=24.62 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006597 343 ELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA 416 (639)
Q Consensus 343 ~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~ 416 (639)
+|...+.+-..-|+||....+.-......++..++.+..+. -..+.+||-+|.+||.....
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~-------------Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA-------------VSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 33333334445677777666666666777777777654433 34566899999999977654
No 345
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=30.28 E-value=27 Score=24.10 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.++.+|.|+.|+.. +..-..|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2em0_A 6 SGMGEKTWKCRECDMC---FSQASSLRLHQN 33 (46)
T ss_dssp CSCCCCCCCCSSSCCC---CSSHHHHHHHGG
T ss_pred ccCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3346788999999743 445566777743
No 346
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.44 E-value=11 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=13.2
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+|.|+.|+.. +..-..|..|-
T Consensus 2 p~~C~~C~k~---f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKR---FVQSSQLANHI 22 (26)
Confidence 6899999733 33344566663
No 347
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.74 E-value=23 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=16.9
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.++.+|.|+.|+.. +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytt_A 8 EGEKPYQCSECGKS---FSGSYRLTQHW 32 (46)
T ss_dssp SCCCTTCCSSSCCC---CSSHHHHHHHH
T ss_pred CCCCCeeCCCCCcc---cCCHHHHHHHH
Confidence 45678999999743 34455566663
No 348
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=29.58 E-value=24 Score=25.56 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=16.8
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.++.+|.|+.|... +..-..|..|-
T Consensus 20 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 44 (54)
T 1yui_A 20 QSEQPATCPICYAV---IRQSRNLRRHL 44 (54)
T ss_dssp TSSCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCCccCCCCCcc---cCCHHHHHHHH
Confidence 45678999999733 34455666664
No 349
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.42 E-value=1.2e+02 Score=25.30 Aligned_cols=45 Identities=24% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 006597 446 METVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELIN 490 (639)
Q Consensus 446 i~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~ 490 (639)
|.+|+.-|+.|.+++...+.+...|-..-..-.+++++-|.+|-+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888898898888888888888876666666777777776644
No 350
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.39 E-value=26 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=19.1
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytr_A 6 SGTGEKPYKCNECGKA---FSQTSKLARHQR 33 (46)
T ss_dssp CCSSCCTTCCTTTCCC---CSSHHHHHHHHT
T ss_pred CCCCCcCcCCCCCCCc---cCCHHHHHHHHH
Confidence 3356788999999743 445566777754
No 351
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=29.26 E-value=55 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=32.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcc-cccccCCCCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTR-VHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~k-v~~l~~~~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+..+|++.|+. |.++. |..+- ..|+|.|+|.+.-
T Consensus 23 ~l~V~NLp~---------~~te~~L~~lF~~--fG~V~~v~i~~----~kg~AFVef~~~~ 68 (100)
T 3r27_A 23 VVHIRGLID---------GVVEADLVEALQE--FGPISYVVVMP----KKRQALVEFEDVL 68 (100)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEET----TTTEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHhc--cCCEEEEEEEc----CCCEEEEEECCHH
Confidence 566889985 4577899999999 87643 33332 3589999998643
No 352
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=29.15 E-value=26 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=18.0
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
.++.+|.|+.|... +.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2el6_A 8 AGVNPYKCSQCEKS---FSGKLRLLVHQR 33 (46)
T ss_dssp CCCCSEECSSSSCE---ESSHHHHHHHHG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 46778999999733 444566777754
No 353
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.90 E-value=3.4e+02 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 006597 391 EDQKKQKEDLHNRIIQLEKQLD 412 (639)
Q Consensus 391 e~hkrEke~~~~kil~LekqL~ 412 (639)
++-+++..++..+|.+||..|.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666665554
No 354
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.87 E-value=27 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=16.9
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.+..+|.|+.|+.. +.....|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2emp_A 7 GTGVKPYMCNECGKA---FSVYSSLTTHQ 32 (46)
T ss_dssp SSCCCSEECSSSCCE---ESCHHHHHHHH
T ss_pred cCCCcCeECCCCCch---hCCHHHHHHHH
Confidence 345778999999733 33445566663
No 355
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.84 E-value=12 Score=22.98 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=13.3
Q ss_pred eeeccCCCCCCccccccHHHHhhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+|.|+.|+.. +.....|..|-
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~ 22 (29)
T 2lvt_A 2 PCQCVMCGKA---FTQASSLIAHV 22 (29)
Confidence 6899999733 23344566663
No 356
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=28.36 E-value=26 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=17.3
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+..+|.|+.|+.. +..-..|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ema_A 8 TGEKRYKCNECGKV---FSRNSQLSQHQ 32 (46)
T ss_dssp TTSCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCcCcCCCCCcch---hCCHHHHHHHH
Confidence 45678999999733 44455677774
No 357
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=27.91 E-value=39 Score=29.13 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=14.3
Q ss_pred ceEeecCCeeeccCCCCCCccccccHHHHhhhhcC
Q 006597 32 HSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGV 66 (639)
Q Consensus 32 ~kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~gv 66 (639)
+.|....+.|+|-.|..+ .+.=+|+++-.|.
T Consensus 50 f~V~~~k~~~~Cf~cg~g----Gd~i~fv~~~~~~ 80 (103)
T 1d0q_A 50 FSVSPEKQIFHCFGCGAG----GNAFTFLMDIEGI 80 (103)
T ss_dssp EEEETTTTEEEETTTCCE----ECHHHHHHHHHTC
T ss_pred EEEEcCCCEEEECCCCCC----CCHHHHHHHHhCC
Confidence 344433444555555311 2344566665554
No 358
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.59 E-value=46 Score=28.48 Aligned_cols=38 Identities=29% Similarity=0.207 Sum_probs=28.0
Q ss_pred ccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCCh
Q 006597 141 GESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDW 182 (639)
Q Consensus 141 G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw 182 (639)
+.+...|++.|+. |.++.-..+- ..+.||+.|+|...-
T Consensus 28 ~~te~~L~~~F~~--~G~V~~v~i~--~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 28 GYSKDVLLRLLQK--YGEVLNLVLS--SKKPGTAVVEFATVK 65 (100)
T ss_dssp SCCHHHHHHHHHT--TSCEEEEEEE--SSSSSEEEEEESCHH
T ss_pred CCCHHHHHHHHHh--cCCEEEEEEc--cCCCCEEEEEECCHH
Confidence 4577899999999 8764333332 467899999998744
No 359
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.10 E-value=26 Score=24.17 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=17.9
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+-.++.+|.|+.|+.. +..-..|..|-
T Consensus 6 ~H~~~~~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2en6_A 6 SGSGEKPYGCNECGKT---FSQKSILSAHQ 32 (46)
T ss_dssp CCCSSCCEEETTTTEE---ESSHHHHHHHH
T ss_pred ccCCCcCeECCCCCcc---cCchHHHHHHH
Confidence 3456789999999732 34455666664
No 360
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.08 E-value=31 Score=23.73 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=17.0
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
-.++.+|.|+.|+.. +..-..|..|-
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (46)
T 2ytd_A 7 GSGEKPYKCSECGKA---FHRHTHLNEHR 32 (46)
T ss_dssp SCCCCSEECSSSCCE---ESSHHHHHHHH
T ss_pred cCCCcCeECCCCCCe---eCChHHHHHHH
Confidence 346778999999733 33445566664
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=27.05 E-value=1.1e+02 Score=28.41 Aligned_cols=38 Identities=0% Similarity=0.116 Sum_probs=29.3
Q ss_pred ccCchhHHHHHHhcCCCC-cccccccCCCC--CceeEEEeeCC
Q 006597 141 GESGSKLRDELIRRGFNP-TRVHPLWNFRG--HSGCAVVEFHK 180 (639)
Q Consensus 141 G~s~~~L~d~f~~~GF~p-~kv~~l~~~~G--h~G~aVV~F~~ 180 (639)
..+-..|+++|+. |.+ ..+...+++.. +.|++.|+|..
T Consensus 17 ~tte~~Lk~~Fs~--fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 17 NIQDISIKNYFKK--YGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCCHHHHHHHHHT--TSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCCHHHHHHHHHh--cCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 4567899999999 876 56666666653 78999999996
No 362
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=26.88 E-value=30 Score=26.18 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=5.7
Q ss_pred CCeeeccCCC
Q 006597 38 DEAFTCPYCP 47 (639)
Q Consensus 38 ~~~~~CP~C~ 47 (639)
..+|.||.|.
T Consensus 47 ~~~~~C~~C~ 56 (73)
T 1f2i_G 47 QKPFQCRICM 56 (73)
T ss_dssp CCCEECTTTC
T ss_pred CCCeECCCCC
Confidence 3456666664
No 363
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.48 E-value=23 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=18.8
Q ss_pred EeecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 34 VKISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 34 Vk~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+-.+..+|.|+.|+.. +.....|..|-.
T Consensus 6 ~H~~~~~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eoe_A 6 SGTGEKPYKCNECGKV---FTQNSHLANHQR 33 (46)
T ss_dssp CCCCCCSSEETTTTEE---CSSHHHHHHHHG
T ss_pred CCCCCCCeECCCcChh---hCCHHHHHHHHH
Confidence 3356788999999733 445566777753
No 364
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.75 E-value=34 Score=24.19 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=16.7
Q ss_pred ecCCeeeccC--CCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPY--CPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~--C~gkkK~~y~~~~LLqHA 63 (639)
.++.+|.||+ |... +..-..|..|-
T Consensus 5 ~gekp~~C~~~~C~k~---F~~~~~L~~H~ 31 (38)
T 2eln_A 5 SSGILLKCPTDGCDYS---TPDKYKLQAHL 31 (38)
T ss_dssp SCCCCEECSSSSCCCE---ESCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCc---cCCHHHHHHHH
Confidence 3567999987 9733 44555666774
No 365
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=25.68 E-value=67 Score=30.03 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=35.6
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCC--CCCceeEEEeeCCCh
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNF--RGHSGCAVVEFHKDW 182 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~--~Gh~G~aVV~F~~dw 182 (639)
++.|-|+|. ..+...|++.|+. |.++ .|+...+. .-+.|++.|.|.+..
T Consensus 17 tlfVgnLp~---------~~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 17 SLYVGDLHP---------DVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred EEEEeCCCC---------CCCHHHHHHHHHh--hCCEEEEEEecccCCCCccccccceeCCHH
Confidence 466789986 4567899999999 7664 45555443 347899999998643
No 366
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.41 E-value=2.4e+02 Score=29.63 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHhhhhhhhhhccCC--CCchHHHHHHHHHHHHHHH
Q 006597 380 QKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQA--LALEIERLKGSLNVMKHMGD--DGDIEVLQKMETVLKDLRE 455 (639)
Q Consensus 380 ~kade~vlkL~e~hkrEke~~~~kil~LekqL~~kQ~--LELEi~qLkG~L~VmKhm~~--~~d~~~~~ki~~l~~~L~e 455 (639)
+.+.+.+-+++++-+.+. ++.+.-..|++||+.-|+ +.+|-|--.-.+-||-.|.. -.-+.-.++|.||+.++..
T Consensus 376 ~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (471)
T 3mq9_A 376 KDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHH
Q 006597 456 KEGELDDLEALNQTL 470 (639)
Q Consensus 456 k~~el~~~e~lnq~L 470 (639)
...+|++.++-...|
T Consensus 455 ~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 455 LNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
No 367
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=25.38 E-value=23 Score=40.14 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=52.8
Q ss_pred hhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHHHHhhhcCCChhhhhhhccCCCcceeeeec
Q 006597 145 SKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVAR 221 (639)
Q Consensus 145 ~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe~~~~GRkdW~~~~~~~~~LYGWvAr 221 (639)
..|-+.+..+||+-+=+.++.+++|..-..-|-|.+.|-=. ..+=.+|-.|.-.+..+-.+|.||-.
T Consensus 300 ~~li~ri~~~g~~~V~lqaf~dp~gdg~~~~~yfpn~~~p~----------~~Dlf~~v~wql~~r~~v~vyAWmp~ 366 (618)
T 4f9d_A 300 DVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPM----------KADIFSRVAWQLRTRSGVNIYAWMPV 366 (618)
T ss_dssp HHHHHHHHHTTCCEEEEECEECTTCSSCBCEESSCCSSSCB----------SCSCHHHHHHHHHHHHCCEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEEEEcCCCCcccccccCCCCCcch----------hhhhHHHHHHHHhhhcCCEEEEeeeh
Confidence 45777899999999999999999998544588999998765 23334488998655557899999966
No 368
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=25.22 E-value=42 Score=32.50 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhcCCCCcccccccccccCcccchHHHH
Q 006597 583 IAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGV 621 (639)
Q Consensus 583 ~aV~~Al~E~neyN~sgry~v~eLWN~ke~rkAtl~E~v 621 (639)
....+|+..+|-+...||.+.-.+..-++.|++.+...+
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~ 275 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALI 275 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhh
Confidence 467788999999999999988888888888888776654
No 369
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.19 E-value=1.5e+02 Score=29.35 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHhhhhhhhhhccC
Q 006597 389 LAEDQKKQKEDLHNRIIQLEKQLDAKQ----ALALEIERLKGSLNVMKHMG 435 (639)
Q Consensus 389 L~e~hkrEke~~~~kil~LekqL~~kQ----~LELEi~qLkG~L~VmKhm~ 435 (639)
|||+...-=+++|....+|-+++.+++ .|.-|+++|+...++.+||.
T Consensus 102 lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la 152 (209)
T 2wvr_A 102 VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMA 152 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333334444444444443332 56777777777777777763
No 370
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.05 E-value=27 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=18.4
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-.++.+|.|+.|+.. +.....|..|-.
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2en1_A 7 GSGEKPFKCEECGKR---FTQNSQLHSHQR 33 (46)
T ss_dssp CCCCCSEEETTTTEE---ESSHHHHHHHGG
T ss_pred CCCCCCeeCCCCCcc---cCCHHHHHHHHH
Confidence 346788999999733 445566777754
No 371
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=25.03 E-value=54 Score=28.80 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=34.2
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhc----CCCCc---ccccccCCCCCceeEEEeeCCChhchHhHHHH
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRR----GFNPT---RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~----GF~p~---kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~f 191 (639)
++.|-|+|. ..+...|++.|+.- |.... .+....- ....|+|.|.|.+.- .-..|+.+
T Consensus 6 ~l~V~nLp~---------~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~-~A~~A~~~ 70 (172)
T 2g4b_A 6 RLYVGNIPF---------GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVD-ETTQAMAF 70 (172)
T ss_dssp EEEEESCCT---------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHH-HHHHHGGG
T ss_pred EEEEcCCCc---------ccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHH-HHHHHHHh
Confidence 567889986 45788999999993 22110 2222221 124789999997533 33344433
No 372
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=24.95 E-value=6.3e+02 Score=26.65 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 006597 395 KQKEDLHNRIIQLEKQLDA 413 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~ 413 (639)
|+...+--.+++|-|+-|+
T Consensus 240 ~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 240 KRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHhhccChHHHHHHHHHHH
Confidence 3344444455566655544
No 373
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.89 E-value=33 Score=26.45 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=19.1
Q ss_pred eEeecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 33 SVKISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 33 kVk~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
++-.++.+|.|+.|... +.....|..|-
T Consensus 8 ~~H~~~k~~~C~~C~k~---f~~~~~L~~H~ 35 (77)
T 2ct1_A 8 RTHSGEKPYECYICHAR---FTQSGTMKMHI 35 (77)
T ss_dssp CCCSCCCSEECTTTCCE---ESCHHHHHHHH
T ss_pred cccCCCCCeECCCcCch---hCCHHHHHHHH
Confidence 44456789999999733 44456677774
No 374
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=24.87 E-value=2e+02 Score=27.09 Aligned_cols=96 Identities=13% Similarity=0.207 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 006597 324 EKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNR 403 (639)
Q Consensus 324 ekl~~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~k 403 (639)
+++..+|.++...+|.-+.+|+- +-+++..|..+.... .+.-...+ |- .+ +-..=..|+...+.+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLef-------q~kr~~~e~~~q~~~--~~~p~~~~-qi--~~---iq~q~~~ek~~r~e~ 92 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQ-------EGQTVVDQVRRQSAN--PLDPRVQE-QV--AN---IQQQVAGKRSELEEQ 92 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSC--TTCHHHHH-HH--HH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccCC--CCChhHHH-HH--HH---HHHHHHHHHHHHHHH
Confidence 45667788888888887777753 333333333331111 11100000 00 01 112223567778888
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 006597 404 IIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (639)
Q Consensus 404 il~LekqL~~kQ~LELEi~qLkG~L~VmKhm 434 (639)
+-+|..||.+-+.|+|.-+=..|+++-+=-+
T Consensus 93 k~~l~~ql~qv~~L~lGsEv~qg~vE~~v~V 123 (150)
T 4dci_A 93 KRNLLQQQAQVRELEMDQIVEQGQLESSCEI 123 (150)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEEECCEE
T ss_pred HHHHHHHHHHHhcCCCcCEEeeceeeEEEEE
Confidence 9999999999999999877777777654433
No 375
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.80 E-value=2.5e+02 Score=23.19 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 006597 400 LHNRIIQLEKQLD 412 (639)
Q Consensus 400 ~~~kil~LekqL~ 412 (639)
+-.||..|+.+.+
T Consensus 4 ikkKm~~lk~e~d 16 (81)
T 1ic2_A 4 IKKKMQMLKLDKE 16 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344555444443
No 376
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.71 E-value=2.7e+02 Score=24.05 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=34.9
Q ss_pred HhhhhhhhhhccCCCCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 006597 423 RLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINA 491 (639)
Q Consensus 423 qLkG~L~VmKhm~~~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~ 491 (639)
.+|.++++||. +-.....+.+.+..++.+.+......+.-...|-.|-+..-+||..+...|-..
T Consensus 6 aIKkKm~~lk~----e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 6 AIKKKMQMLKL----DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 112234455556656666555555555555566555555556666555555443
No 377
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=24.66 E-value=59 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=33.2
Q ss_pred EEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhc
Q 006597 124 GIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPG 184 (639)
Q Consensus 124 gII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~G 184 (639)
+.|-|++. ..+...|++.|+. |..+.-..++.. ...|++.|+|.+.-..
T Consensus 49 l~VgNL~~---------~vted~L~~~Fs~--fG~V~~V~i~~k-~~rgfAFVeF~d~~~A 97 (164)
T 1sjr_A 49 IIVENLFY---------PVTLDVLHQIFSK--FGTVLKIITFTK-NNQFQALLQYADPVSA 97 (164)
T ss_dssp EEECSCCS---------CCCHHHHHHHHHH--HSCEEEEEEEES-SSCEEEEEEESCHHHH
T ss_pred EEEeCcCC---------CCCHHHHHHHHHh--cCCEEEEEEEeC-CCCCEEEEEECCHHHH
Confidence 55778875 3466789999999 876444444322 3568999999765443
No 378
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.44 E-value=4.6e+02 Score=28.74 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 245 SEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSAR 313 (639)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ~~a~ 313 (639)
++-+....+.....|..|+|........++.|..++... +..+.++....+.|..++.+.|....
T Consensus 95 q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~----Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 95 EKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKT----QKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc----cccccchhhHHHHHHHHHHHHHHHHH
Confidence 444455555555555666655555555555554444333 33344445556667766666555443
No 379
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.34 E-value=36 Score=24.62 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=17.6
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
....+|.|+.|... +.....|..|-
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~ 32 (54)
T 2eps_A 8 SVGKPYICQSCGKG---FSRPDHLNGHI 32 (54)
T ss_dssp CSSCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHH
Confidence 34678999999733 44556788884
No 380
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=24.24 E-value=27 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=17.4
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+.+|.|+.|. + .+.....|..|-
T Consensus 5 gekp~~C~~Cg-K--~F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCG-I--AFSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTT-E--ECSCHHHHHHHH
T ss_pred CccCeECCCCC-C--ccCCHhHccCcC
Confidence 56799999997 3 344566788774
No 381
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.15 E-value=3.7e+02 Score=23.63 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHhhhhchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 328 LQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQL 407 (639)
Q Consensus 328 ~eLe~k~~eL~~r~~~L~k~~~~~~~er~kl~~e~~kn~~~~~~l~lA~~eQ~kade~vlkL~e~hkrEke~~~~kil~L 407 (639)
.+|++.....+.....|...-+....-|...+.++.+-...-..|-.+=.+ ..=+.|-.-.++-..+..+.-+|
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHH
Q 006597 408 EKQLDAKQ 415 (639)
Q Consensus 408 ekqL~~kQ 415 (639)
+.||..+.
T Consensus 89 ~~qL~d~d 96 (97)
T 2eqb_B 89 TEQLREKD 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhcc
No 382
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.91 E-value=38 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=15.4
Q ss_pred cCCeeeccCCCCCCccccc-cHHHHhh
Q 006597 37 SDEAFTCPYCPKKRKQEYL-YKDLLQH 62 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~-~~~LLqH 62 (639)
..++|.||-|... |+ +.+|-.|
T Consensus 9 ~~~~~~CPrCn~~----f~~~~sLr~H 31 (49)
T 2e72_A 9 DGGRKICPRCNAQ----FRVTEALRGH 31 (49)
T ss_dssp CSSCCCCTTTCCC----CSSHHHHHHH
T ss_pred cCCceeCCccccc----ccchHHHHhh
Confidence 3489999999855 66 4456555
No 383
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.68 E-value=4.4e+02 Score=24.39 Aligned_cols=44 Identities=25% Similarity=0.322 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhcc
Q 006597 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHM 434 (639)
Q Consensus 388 kL~e~hkrEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm 434 (639)
+.|-.-.++...+..+.-+|+.||..+..| |.-|..+|.-+|++
T Consensus 89 ~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l---l~~lq~QL~~LK~v 132 (135)
T 2e7s_A 89 NLVADARMEKYAIEILNKRLTEQLREKDML---LDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHTTTHHHHC---C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345556788899999999999999998654 55566777766664
No 384
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.64 E-value=36 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=16.9
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
++.+|.|+.|... +.....|..|-.
T Consensus 6 ~~~~~~C~~C~k~---f~~~~~L~~H~~ 30 (70)
T 1x5w_A 6 SGHPEKCSECSYS---CSSKAALRIHER 30 (70)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHHG
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 5678999999733 344556777754
No 385
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.48 E-value=3.9e+02 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHHHHHHHHHh----HHHHHHHHHHHhhhhhhhhhcc
Q 006597 402 NRIIQLEKQLD----AKQALALEIERLKGSLNVMKHM 434 (639)
Q Consensus 402 ~kil~LekqL~----~kQ~LELEi~qLkG~L~VmKhm 434 (639)
+.|.-|-|.+| .+-.||..|+-|+.-|..+|.+
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 3555666777777777766653
No 386
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.37 E-value=48 Score=20.61 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=15.9
Q ss_pred Ceeecc--CCCCCCccccccHHHHhhhh
Q 006597 39 EAFTCP--YCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 39 ~~~~CP--~C~gkkK~~y~~~~LLqHA~ 64 (639)
.+|.|+ .|... +.....|..|-.
T Consensus 2 k~~~C~~~~C~k~---f~~~~~L~~H~~ 26 (32)
T 1zfd_A 2 RPYSCDHPGCDKA---FVRNHDLIRHKK 26 (32)
T ss_dssp CSBCCCCTTCCCC---BSSSHHHHHHHG
T ss_pred CCCcCcCCCCCCc---cCCHHHHHHHHH
Confidence 579999 89733 455667777754
No 387
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.35 E-value=38 Score=24.47 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=14.5
Q ss_pred eeeccCCCCCCccccccHHHHhh
Q 006597 40 AFTCPYCPKKRKQEYLYKDLLQH 62 (639)
Q Consensus 40 ~~~CP~C~gkkK~~y~~~~LLqH 62 (639)
-|-||.|. ++.-....|..|
T Consensus 5 GFiCP~C~---~~l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCM---KSLGSADELFKH 24 (34)
T ss_dssp EEECTTTC---CEESSHHHHHHH
T ss_pred ccCCcHHH---HHcCCHHHHHHH
Confidence 39999997 234567777777
No 388
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.19 E-value=1.5e+02 Score=21.84 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=16.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q 006597 318 RIFTDHEKLKLQLESQKKELE 338 (639)
Q Consensus 318 ~i~~e~ekl~~eLe~k~~eL~ 338 (639)
.++.+|+||..+|+.|-.++-
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa 24 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999987766543
No 389
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.18 E-value=40 Score=25.70 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=16.3
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
.+..+|.|+.|... +.....|..|-
T Consensus 13 ~~~~~~~C~~C~k~---f~~~~~l~~H~ 37 (74)
T 2lce_A 13 HSDKPYKCDRCQAS---FRYKGNLASHK 37 (74)
T ss_dssp CCCCSBCCTTSSCC---BSCHHHHHHHH
T ss_pred CCCCCeECCCCCce---eCCHHHHHHHH
Confidence 45678999999744 33445566664
No 390
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=23.09 E-value=32 Score=27.52 Aligned_cols=16 Identities=19% Similarity=0.681 Sum_probs=12.2
Q ss_pred eEeecCCeeeccCCCC
Q 006597 33 SVKISDEAFTCPYCPK 48 (639)
Q Consensus 33 kVk~~~~~~~CP~C~g 48 (639)
.|-...++|.||||..
T Consensus 26 ~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 26 QVDYRAKLWACNFCYQ 41 (59)
T ss_dssp EEEGGGTEEECSSSCC
T ss_pred EEECCCCEEEcccCCC
Confidence 5655567999999973
No 391
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.00 E-value=26 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=17.4
Q ss_pred eecCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 35 KISDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 35 k~~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
-..+.+|.|+.|... +.....|..|-.
T Consensus 5 h~~~k~~~C~~C~k~---f~~~~~l~~H~~ 31 (45)
T 2epq_A 5 SSGEKPYSCPVCGLR---FKRKDRMSYHVR 31 (45)
T ss_dssp CSSCCSSEETTTTEE---CSCHHHHHHHHH
T ss_pred cCCCCCCcCCCCCcc---cCCHHHHHHHHH
Confidence 346779999999733 334455666643
No 392
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.87 E-value=1.2e+02 Score=26.58 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=33.7
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChh
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
..++.|-|+|. . +.+..+|++.|+. |.++ .|...- ..|+|.|+|...-.
T Consensus 25 ~~~l~V~NLp~-~-------~~te~~L~~lF~~--fG~V~~v~i~~----~kg~aFVef~~~~~ 74 (112)
T 1x4f_A 25 GRVIHLSNLPH-S-------GYSDSAVLKLAEP--YGKIKNYILMR----MKSQAFIEMETRED 74 (112)
T ss_dssp CCEEEEESCCC-S-------SCCSHHHHTTTTT--TSCCSEEEEET----TTTEEEEECSSHHH
T ss_pred CCEEEEeCCCC-c-------cCCHHHHHHHHHh--cCCEEEEEEec----CCCEEEEEECCHHH
Confidence 45677889885 1 2567889999998 8753 444331 36899999987543
No 393
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.65 E-value=4e+02 Score=29.28 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhc-cCccccc---------ceecCCC
Q 006597 480 ELQDARKELINALKEL-SGRAHIG---------LKRMGEL 509 (639)
Q Consensus 480 ELq~ARk~lI~~l~~~-~~~~~Ig---------iKrmGel 509 (639)
++++....++-.+..+ ...++|| |++-|+.
T Consensus 129 ~~~~~~~~~l~~iPN~~~~~vP~g~~e~~~n~~v~~~g~~ 168 (484)
T 3lss_A 129 QLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNT 168 (484)
T ss_dssp HHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCCCCccCCCCCCcccCcEEEEecCCC
Confidence 4555555555566666 4444555 8888875
No 394
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=22.38 E-value=92 Score=26.54 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=49.3
Q ss_pred eEEEeeccccccCCCcccccCchhHHHHHHhcCCCC-cccccccCCC---CCceeEEEeeCCChhchHhHHHHHHHhhhc
Q 006597 123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNP-TRVHPLWNFR---GHSGCAVVEFHKDWPGLHNAMSFEKAYEAD 198 (639)
Q Consensus 123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p-~kv~~l~~~~---Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe~~ 198 (639)
+++|.|+.+.+. +.-.....|++.|+. |.+ ..|....++. ...|++.|.|.+.-..-.-...|+..+
T Consensus 10 ~l~l~Nm~~~~~----l~dd~~~dl~~~f~~--~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~--- 80 (105)
T 2pe8_A 10 VVLLRNMVGAGE----VDEDLEVETKEECEK--YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY--- 80 (105)
T ss_dssp EEEEESSSCSCC----C---CHHHHHHHGGG--GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE---
T ss_pred EEEEEcCCChHH----hhHHHHHHHHHHHHh--cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE---
Confidence 678889975111 112346889999999 865 4555544432 247999999987644322222222211
Q ss_pred CCChhhhhhhccCCCcceeeeeccCCCCC
Q 006597 199 HYGKKDWYASNQEKSGLYAWVARSDDYNL 227 (639)
Q Consensus 199 ~~GRkdW~~~~~~~~~LYGWvAradDy~~ 227 (639)
..++.|+--.|..++|..
T Consensus 81 -----------~~Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 81 -----------FGGRVVKACFYNLDKFRV 98 (105)
T ss_dssp -----------ETTEECEEEECCHHHHHT
T ss_pred -----------ECCcEEEEEEcCHHHhhh
Confidence 125667777776666644
No 395
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.22 E-value=3.9e+02 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhccCC
Q 006597 395 KQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGD 436 (639)
Q Consensus 395 rEke~~~~kil~LekqL~~kQ~LELEi~qLkG~L~VmKhm~~ 436 (639)
+.+..|..||.+|++++...+.=---+..|.+-..-=-+|++
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD 56 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGD 56 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 456788999999999887766655555555555554455654
No 396
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=41 Score=25.83 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=14.7
Q ss_pred cCCeeeccCCCCCCccccccHHHHhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQH 62 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqH 62 (639)
++.+|.|+.|... +.....|..|
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H 26 (78)
T 2d9h_A 4 GSSGLQCEICGFT---CRQKASLNWH 26 (78)
T ss_dssp SCCCEECSSSCCE---ESSHHHHHHH
T ss_pred CCcCeECCCCCCe---eCCHHHHHHH
Confidence 5678999999733 3334445555
No 397
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.11 E-value=38 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=17.5
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
++++|.||.|... +.....|..|-.
T Consensus 5 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 29 (96)
T 2dmd_A 5 SSGPHKCEVCGKC---FSRKDKLKTHMR 29 (96)
T ss_dssp CCCCCCBTTTTBC---CCCHHHHHHHGG
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHHH
Confidence 5678999999733 445667777754
No 398
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.09 E-value=37 Score=28.16 Aligned_cols=24 Identities=33% Similarity=0.758 Sum_probs=0.0
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhh
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQH 62 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqH 62 (639)
.++.+|.|++|+.. +.....|.+|
T Consensus 52 ~~~k~~~C~~C~k~---F~~~~~L~~H 75 (85)
T 2lv2_A 52 HAAQVFPCKYCPAT---FYSSPGLTRH 75 (85)
T ss_dssp SCSSSEECTTSSCE---ESSHHHHHHH
T ss_pred cCCCccCCCCCCCE---eCCHHHHHHh
No 399
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.00 E-value=34 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCccccccHHHHhhhhc
Q 006597 36 ISDEAFTCPYCPKKRKQEYLYKDLLQHASG 65 (639)
Q Consensus 36 ~~~~~~~CP~C~gkkK~~y~~~~LLqHA~g 65 (639)
.+..+|.|+.|... +.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (48)
T 2epr_A 8 RTRKQVACEICGKI---FRDVYHLNRHKLS 34 (48)
T ss_dssp CCCCSEEETTTTEE---ESSHHHHHHHGGG
T ss_pred CCCcCeeCCCCCcc---cCCHHHHHHHHHh
Confidence 35678999999732 4456678888543
No 400
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.48 E-value=8.3e+02 Score=26.76 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHhhhchHHHHH
Q 006597 241 LKTISEMMEEEAR---KQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEK 289 (639)
Q Consensus 241 LKTi~ei~~E~~r---k~~~lv~~L~n~I~~knk~l~elE~k~~e~s~sL~r 289 (639)
|..+.+++.+-++ ...++|..|...+..+...+..++...++.+..|.+
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4444444444443 444567777777777777777777766666555543
No 401
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.42 E-value=73 Score=28.19 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=26.3
Q ss_pred ccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChh
Q 006597 141 GESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWP 183 (639)
Q Consensus 141 G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~ 183 (639)
+.+...|++.|+. |..+....+ ..| .||+.|.|.+.-.
T Consensus 38 ~~te~~L~~~F~~--fG~v~~v~i--~~~-rgfaFV~f~~~~~ 75 (114)
T 2cq2_A 38 GVSRNQLLPVLEK--CGLVDALLM--PPN-KPYSFARYRTTEE 75 (114)
T ss_dssp TCCHHHHHHHHHH--HSCEEEEEC--CTT-CSCEEEEESSHHH
T ss_pred CCCHHHHHHHHHh--cCCeEEEEE--eCC-CCEEEEEECCHHH
Confidence 4567899999999 765433222 222 6899999987543
No 402
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=21.40 E-value=70 Score=27.44 Aligned_cols=16 Identities=44% Similarity=0.540 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhcchHHHHHHH
Q 006597 464 EALNQTLIIRERKSNDELQDARK 486 (639)
Q Consensus 464 e~lnq~Li~ker~sndELq~ARk 486 (639)
..|.|+|. +|||+|+.
T Consensus 35 Q~~i~~Lt-------~eLq~A~~ 50 (90)
T 4b6x_A 35 QLMVNNLT-------DELQDAID 50 (90)
T ss_dssp HHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHH
Confidence 44555554 55666555
No 403
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=21.32 E-value=25 Score=30.60 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=10.0
Q ss_pred CeeeccCCCCCCc
Q 006597 39 EAFTCPYCPKKRK 51 (639)
Q Consensus 39 ~~~~CP~C~gkkK 51 (639)
..+|||.|++-.=
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 4589999997643
No 404
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=21.14 E-value=26 Score=29.98 Aligned_cols=13 Identities=23% Similarity=0.812 Sum_probs=10.1
Q ss_pred CeeeccCCCCCCc
Q 006597 39 EAFTCPYCPKKRK 51 (639)
Q Consensus 39 ~~~~CP~C~gkkK 51 (639)
..+|||.|++-.=
T Consensus 25 ~~LRCp~Cqnqsi 37 (84)
T 2hl7_A 25 QELRCPKCQNQDI 37 (84)
T ss_dssp HHEECTTSSSCBT
T ss_pred HcCcCCCCCCCch
Confidence 4689999997643
No 405
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.72 E-value=46 Score=25.35 Aligned_cols=10 Identities=20% Similarity=0.810 Sum_probs=5.0
Q ss_pred CCeeeccCCC
Q 006597 38 DEAFTCPYCP 47 (639)
Q Consensus 38 ~~~~~CP~C~ 47 (639)
+.+|.||.|+
T Consensus 55 ~~~~~C~~C~ 64 (82)
T 2kmk_A 55 EKPHKCQVCG 64 (82)
T ss_dssp CCCEECTTTS
T ss_pred CCCCcCCCcc
Confidence 3445555554
No 406
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.69 E-value=5.7e+02 Score=24.61 Aligned_cols=69 Identities=26% Similarity=0.300 Sum_probs=48.4
Q ss_pred hHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006597 272 HLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQ-LSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEK 346 (639)
Q Consensus 272 ~l~elE~k~~e~s~sL~r~meEkd~l~~~yneEi~kmQ-~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k 346 (639)
++.+++..+...-.++...+++-..|..+|..-...|+ ..+..++. .-|..-|...+.+.|.-|..|.+
T Consensus 80 ~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp------~~L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 80 QLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGD------IALKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567777777778888888888888888866666664 33344433 34566777888888888888865
No 407
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=20.56 E-value=80 Score=28.43 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=45.5
Q ss_pred cceEEEeeccccccCCCcccccCchhHHHHHHh-cCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHHHHHhhhcC
Q 006597 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIR-RGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADH 199 (639)
Q Consensus 121 PwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~-~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~Fe~~~ 199 (639)
|||..|+.+.+ ...+..-...-+..|...+.. =||-... .+.++.| . ...|-|=.|-.-|..-.+-..|-+++.
T Consensus 11 ~pm~aViFe~~-~~~~~~~Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~ 85 (122)
T 2go8_A 11 PPYYAVIFSSV-KSENDTGYGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKE 85 (122)
T ss_dssp SCEEEEEEEEE-CC------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC-------
T ss_pred CCEEEEEEEEE-eCCchhHHHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHH
Confidence 67777766654 222211223334556664443 2554444 5666666 3 456677778888898899999999999
Q ss_pred CChhhhhhh-ccC---CCcceeeeeccCCCC
Q 006597 200 YGKKDWYAS-NQE---KSGLYAWVARSDDYN 226 (639)
Q Consensus 200 ~GRkdW~~~-~~~---~~~LYGWvAradDy~ 226 (639)
.||..|... +.. --.=||+-.+..|+.
T Consensus 86 ~Gr~~w~~~y~~rv~~V~r~y~~~~~~~~~~ 116 (122)
T 2go8_A 86 KGRSVWYESYAVRVAKVDRQRLFQENTNDLE 116 (122)
T ss_dssp ------CCEEEEEEEEECCCCCCCC------
T ss_pred hHHHHHhccCcEEEEEEEEEecCCCCCcchh
Confidence 999999863 211 234466665555553
No 408
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.55 E-value=2.1e+02 Score=24.57 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006597 314 DHFQRIFTDHEKLKLQLESQKKELELRGEELEKRET 349 (639)
Q Consensus 314 ~~~~~i~~e~ekl~~eLe~k~~eL~~r~~~L~k~~~ 349 (639)
.-....+.+|++|..+++.+..++..-..++..+..
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567889999999998888777666655554433
No 409
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=20.48 E-value=32 Score=32.94 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=16.1
Q ss_pred eEe-ecCCeeeccCCCCCCcccccc
Q 006597 33 SVK-ISDEAFTCPYCPKKRKQEYLY 56 (639)
Q Consensus 33 kVk-~~~~~~~CP~C~gkkK~~y~~ 56 (639)
||- .++++|+||.|...+.-.|.|
T Consensus 51 KV~~~~~g~~~CekC~~~~~~~~RY 75 (172)
T 3u50_C 51 SVLKYHGDSFFCESCQQFINPQVHL 75 (172)
T ss_dssp CEEEETTTEEEETTTTEECCCEEEE
T ss_pred EeeeCCCCeEECCCCCCCCCceEEE
Confidence 454 689999999997542333443
No 410
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.38 E-value=30 Score=26.44 Aligned_cols=12 Identities=25% Similarity=0.958 Sum_probs=9.1
Q ss_pred CeeeccCCCCCC
Q 006597 39 EAFTCPYCPKKR 50 (639)
Q Consensus 39 ~~~~CP~C~gkk 50 (639)
..|+||.|...+
T Consensus 29 ~dw~CP~Cg~~k 40 (46)
T 6rxn_A 29 DDWCCPVCGVSK 40 (46)
T ss_dssp TTCBCTTTCCBG
T ss_pred CCCcCcCCCCcH
Confidence 349999998553
No 411
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=20.35 E-value=52 Score=21.59 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=15.6
Q ss_pred cCCeeeccC--CCCCCccccccHHHHhhh
Q 006597 37 SDEAFTCPY--CPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 37 ~~~~~~CP~--C~gkkK~~y~~~~LLqHA 63 (639)
+..+|.|++ |+.. +..-..|..|-
T Consensus 5 ~~k~~~C~~~~C~k~---f~~~~~L~~H~ 30 (37)
T 1va1_A 5 KKKQHICHIQGCGKV---YGKTSHLRAHL 30 (37)
T ss_dssp SCCCEECCSTTCCCE---ESCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCc---cCCHHHHHHHH
Confidence 467899996 9733 34455566664
No 412
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.23 E-value=49 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=17.3
Q ss_pred cCCeeeccCCCCCCccccccHHHHhhhh
Q 006597 37 SDEAFTCPYCPKKRKQEYLYKDLLQHAS 64 (639)
Q Consensus 37 ~~~~~~CP~C~gkkK~~y~~~~LLqHA~ 64 (639)
+..+|.|+.|... +.....|..|-.
T Consensus 4 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 28 (95)
T 2yt9_A 4 GSSGVACEICGKI---FRDVYHLNRHKL 28 (95)
T ss_dssp CCSCEECSSSCCE---ESSSHHHHHHHH
T ss_pred CCCCeECCCCCCc---cCChHHHHHHHH
Confidence 5678999999733 445566777754
No 413
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=20.21 E-value=48 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=11.3
Q ss_pred CCeeeccCCCCCCccccccHHHHhhh
Q 006597 38 DEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 38 ~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
+.+|.||.|... +.....|..|-
T Consensus 60 ~~~~~C~~C~~~---f~~~~~l~~H~ 82 (90)
T 1a1h_A 60 EKPFACDICGRK---FARSDERKRHT 82 (90)
T ss_dssp CCCEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCccCCCCCch---hCCHHHHHHHH
Confidence 445666666522 23344455553
No 414
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.19 E-value=46 Score=25.54 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=11.9
Q ss_pred CCeeeccCCCCCCccccccHHHHhhh
Q 006597 38 DEAFTCPYCPKKRKQEYLYKDLLQHA 63 (639)
Q Consensus 38 ~~~~~CP~C~gkkK~~y~~~~LLqHA 63 (639)
..+|.||.|... +.....|..|-
T Consensus 44 ~~~~~C~~C~~~---f~~~~~L~~H~ 66 (77)
T 2cot_A 44 EKPYKCDECGKA---FIQRSHLIGHH 66 (77)
T ss_dssp SCSEECSSSCCE---ESSHHHHHHHG
T ss_pred CcCeeCCCCCCc---cCCHHHHHHHH
Confidence 455667766522 33344455554
No 415
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.12 E-value=2.5e+02 Score=30.04 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc-cCccccc--------ceecC
Q 006597 437 DGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKEL-SGRAHIG--------LKRMG 507 (639)
Q Consensus 437 ~~d~~~~~ki~~l~~~L~ek~~el~~~e~lnq~Li~ker~sndELq~ARk~lI~~l~~~-~~~~~Ig--------iKrmG 507 (639)
++-++++..+.+|.+++.+.++++. ++++....++-.+..+ ...+++| |++-|
T Consensus 68 ~~~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g 129 (425)
T 2dq3_A 68 KDTTEIQNRVKELKEEIDRLEEELR------------------KVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWG 129 (425)
T ss_dssp SCTTTSTTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeC
Confidence 3445667778888887777666653 4555555566667666 4555665 89999
Q ss_pred CC
Q 006597 508 EL 509 (639)
Q Consensus 508 el 509 (639)
+-
T Consensus 130 ~~ 131 (425)
T 2dq3_A 130 EP 131 (425)
T ss_dssp CC
T ss_pred CC
Confidence 73
Done!