BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006598
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 238/642 (37%), Positives = 330/642 (51%), Gaps = 59/642 (9%)
Query: 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
+DTGIWPES SF DE PP+W G C+ F CNRKIIGAR Y G G +
Sbjct: 29 LDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDV 85
Query: 61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
N PRD GHGTHT+STAAGG+V A+ +A YK+CW
Sbjct: 86 NG--------PRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN 137
Query: 121 PGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVDDIISIGSFHAVAKGISVVCSA 180
GCS GVD+I +VD I+IGSFHAV +GI SA
Sbjct: 138 -DGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVD-AIAIGSFHAVERGILTSNSA 195
Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
GN GP T + +PW+++VAAST+DR F T + +GN Q+ G + N++YP+V
Sbjct: 196 GNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLV 252
Query: 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQS----QFQRSAATAARTVLDSGG 296
G+DI D+ ++R C ++N L++GKIV+C S +F +S AA ++ S
Sbjct: 253 SGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSN- 311
Query: 297 VGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPE 356
T+D S+ +P +D + L Y+ + R+P F T I +P
Sbjct: 312 ---------TRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI-FKSTTILNASAPV 361
Query: 357 VAFFXXXXXXXXXXXVLKPDIAAPGVNILASW---SPVSNLEQTDHVTPNYIPQFNFKVE 413
V F V+KPDI+ PGV ILA+W +PV + + F +
Sbjct: 362 VVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL----------FNII 411
Query: 414 SGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPF 473
SGTSMSCPHI+GI +K +PTWSPAAIKSA++TTAS + A P + F
Sbjct: 412 SGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN-------ARFNPQAE---F 461
Query: 474 DYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNRASTTCNDKSTKFLVN 533
YG GHV+P KA+ PGLVYD SDYV+FLC GYN A+ + + C +T + +
Sbjct: 462 AYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWD 521
Query: 534 LNLPSITI---PELKKSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRK 590
LN PS + P + +R +T+V+P S Y A + AP G T+ V P+ L+FN
Sbjct: 522 LNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGD 581
Query: 591 KLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIPLIVRTII 632
+ F +T R ++G +L W DG+H VR P+ + +++
Sbjct: 582 RKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITITSLV 621
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 220/654 (33%), Positives = 324/654 (49%), Gaps = 58/654 (8%)
Query: 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKL 60
+D+GIWPES SF+D+ M EIP RW GIC+ G FN S CNRK+IGA ++ KG A +
Sbjct: 31 LDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTV 90
Query: 61 NSSDRVEFLSPRDAVGHGTHTSSTAAGGMVKDASFXXXXXXXXXXXXXXXWLAIYKICWA 120
N + S RD GHGTH +S AG K S LA+YK +
Sbjct: 91 N----ITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN 146
Query: 121 PGGCSSXXXXXXXXXXXXXGVDVIXXXXXXXXXXXTYVDDIISIGSFHAVAKGISVVCSA 180
G +S GVD+I +D ISI SF A+ KG+ V SA
Sbjct: 147 EGTFTS-DLIAAMDQAVADGVDMI--SISYGYRFIPLYEDAISIASFGAMMKGVLVSASA 203
Query: 181 GNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240
GN GP ++ N +PW++ VA+ DR F +T+GN + G + + + + P++
Sbjct: 204 GNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARA-FVRDSPVI 262
Query: 241 IGKDIATFDADEGSARSCESGTLNATLV--RGKIVIC-----FQSQFQ---RSAATAART 290
K ++ C S L + + IVIC F Q + R+ AA
Sbjct: 263 YNKTLS----------DCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIF 312
Query: 291 VLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIG 350
+ + GV A FP P + V+ G ++ Y++ + P +F +T +
Sbjct: 313 ISEDPGV-FRSATFPN---------PGVVVNKKEGKQVINYVKNSVTPTATITFQETYLD 362
Query: 351 QQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNF 410
+ +P VA + KPDI APGV ILA++ P N+ T + N + ++
Sbjct: 363 TKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP--NVFATS-IGTNILLSTDY 419
Query: 411 KVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQA 470
+ESGTSM+ PH +GI A+LKA HP WSP+AI+SA++TTA D + I + +K A
Sbjct: 420 ILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI-KDSDNNKAA 478
Query: 471 DPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYNNSAISLMNR--ASTTCNDKST 528
P D G GHVDPN+A+DPGLVYD DYV LC++ + + R AS C++ S
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPS- 537
Query: 529 KFLVNLNLPS-ITIPELKKSITV-----SRQVTNVSPMNSVYTARVQAPAGTTVRVEPST 582
+LN PS I + ++ + T+ R VTNV + Y A+++AP +T+ V P
Sbjct: 538 ---ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQI 594
Query: 583 LTFNSTRKKLKFKVTF-YSRLRVQGRYSFGNLFW--EDGIHVVRIPLIVRTIID 633
L F + +K + +T Y Q R + G++ W ++G H VR P++ II+
Sbjct: 595 LVFKNKNEKQSYTLTIRYIGDEGQSR-NVGSITWVEQNGNHSVRSPIVTSPIIE 647
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 24/115 (20%)
Query: 373 LKPDIAAPGVNILASWSPVSNLEQ--TDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL 430
LKP++ APG I+A+ + +++ Q D+ T GT+M+ PH++GI ALL
Sbjct: 323 LKPEVVAPGNWIIAARASGTSMGQPINDYYT----------AAPGTAMATPHVAGIAALL 372
Query: 431 KAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKA 485
HP+W+P +K+A++ TA + P + AD YG G V+ KA
Sbjct: 373 LQAHPSWTPDKVKTALIETADIV-----------KPDEIAD-IAYGAGRVNAYKA 415
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGTSM+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I+++ +P + +SGT+M+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSIVST-----------------LPGNKYGAKSGTAMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I+++ +P + +SGT+M+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSIVST-----------------LPGNKYGAKSGTAMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GTSM+ PH++G+ AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGVAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I WS +P + +SGT M+ PH++G AL+ + HP
Sbjct: 185 DVMAPGVSI---WS--------------TLPGNKYGAKSGTXMASPHVAGAAALILSKHP 227
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 228 NWTNTQVRSSLENTTTKLGDSF 249
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + SGTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIXST-----------------LPGNKYGAYSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGGTYGAYNGTSMATPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIVTTAS 451
TW+ A ++ + +TA+
Sbjct: 240 TWTNAQVRDRLESTAT 255
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 33/106 (31%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + SGTSM+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGGKYGALSGTSMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVD 481
W+ ++S++ TA+ K D F YG G ++
Sbjct: 231 NWTNTQVRSSLENTAT----------------KLGDSFYYGKGLIN 260
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGT M+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGNKYGAKSGTXMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 231 NWTNTQVRSSLENTTTKLGDSF 252
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 17/74 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGTSM+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGNKYGAKSGTSMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIVTT 449
W+ ++S++ T
Sbjct: 231 NWTNTQVRSSLENT 244
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +SGT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAKSGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GTSM+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GTSM+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GTSM+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GTSM+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GTSM+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTSMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + SGTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIXST-----------------LPGNKYGAYSGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTYLGDSF 261
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 33/106 (31%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + SGT+M+ PH++G AL+ + HP
Sbjct: 188 DVMAPGVSICST-----------------LPGGKYGALSGTAMASPHVAGAAALILSKHP 230
Query: 436 TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVD 481
W+ ++S++ TA+ K D F YG G ++
Sbjct: 231 NWTNTQVRSSLENTAT----------------KLGDSFYYGKGLIN 260
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLQNTTTKLGDSF 261
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLQNTTTKLGDSF 261
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 47/231 (20%)
Query: 268 VRGKIVICFQSQ--FQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYI-QVDFA- 323
V+GKI + + F+ A A + +G VG++ + +D F +P + Q+ A
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKK----AGAVGVLI--YDNQDKGFPIELPNVDQMPAAF 341
Query: 324 IGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFXXXXXXXXXXXVLKPDIAAPGVN 383
I ++ N + F+ T V+ +++ F +KPDIAAPG +
Sbjct: 342 ISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTADGN--IKPDIAAPGQD 399
Query: 384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSP---- 439
IL+S + + SGTSMS P ++GI+ LL+ + T P
Sbjct: 400 ILSS-----------------VANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTP 442
Query: 440 -----AAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKA 485
A K + + +L DE ++ +P +Q G G VD KA
Sbjct: 443 SERLDLAKKVLMSSATALYDEDEKAYF---SPRQQ------GAGAVDAKKA 484
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTSM+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGGTYGAYNGTXMATPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIVTTAS 451
TW+ A ++ + +TA+
Sbjct: 240 TWTNAQVRDRLESTAT 255
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + SGT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYSGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GT M+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + SGT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYSGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GT M+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GT M+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGGTYGAYNGTCMATPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIVTTAS 451
TW+ A ++ + +TA+
Sbjct: 240 TWTNAQVRDRLESTAT 255
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APGVN+ +++ P + +GT M+ PH++G AL+K +P
Sbjct: 191 DIVAPGVNVQSTY-----------------PGSTYASLNGTXMATPHVAGAAALVKQKNP 233
Query: 436 TWSPAAIKSAIVTTAS 451
+WS I++ + TA+
Sbjct: 234 SWSNVQIRNHLKNTAT 249
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 18/93 (19%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APG +I ++W Y + +GTSM+ PH++G+ AL +P
Sbjct: 196 DLFAPGASIPSAW---------------YTSDTATQTLNGTSMATPHVAGVAALYLEQNP 240
Query: 436 TWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHK 468
+ +PA++ SAI+ A+ S + G+P++
Sbjct: 241 SATPASVASAILNGATTGR---LSGIGSGSPNR 270
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 405 IPQFNF---KVESGTSMSCPHISGIVAL----LKAIHPTWSPAAIKSAIVTTASLKDEYA 457
+PQF ++ +GTS + PH++G VAL LK + +SP +IK AI TA+ K Y
Sbjct: 447 VPQFTXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT-KLGY- 504
Query: 458 QSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVYDMEVSDYVRFLCAMGYN 509
DPF G G ++ KA + + + +RF +G N
Sbjct: 505 ------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GT M+ PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTXMASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 220 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 262
Query: 434 H 434
+
Sbjct: 263 Y 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 218 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 260
Query: 434 H 434
+
Sbjct: 261 Y 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 229 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 271
Query: 434 H 434
+
Sbjct: 272 Y 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 229 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 271
Query: 434 H 434
+
Sbjct: 272 Y 272
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI APG +I +SW Y SGTSM+ PH++G+ AL +P
Sbjct: 198 DIYAPGSSITSSW---------------YTSNSATNTISGTSMASPHVAGVAALYLDENP 242
Query: 436 TWSPAAIKSAIVTTAS 451
SPA + + + T A+
Sbjct: 243 NLSPAQVTNLLKTRAT 258
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 295 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 337
Query: 434 H 434
+
Sbjct: 338 Y 338
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 298 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 340
Query: 434 H 434
+
Sbjct: 341 Y 341
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 298 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 340
Query: 434 H 434
+
Sbjct: 341 Y 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 298 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 340
Query: 434 H 434
+
Sbjct: 341 Y 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT+M+ PH+SG+VAL++A
Sbjct: 298 QPEVSAPGVDILSTY-----------------PDDSYETLMGTAMATPHVSGVVALIQAA 340
Query: 434 H 434
+
Sbjct: 341 Y 341
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APGV+I ++ +P + +GTS + PH++G AL+ + HP
Sbjct: 197 DVMAPGVSIQST-----------------LPGNKYGAYNGTSXASPHVAGAAALILSKHP 239
Query: 436 TWSPAAIKSAIV-TTASLKDEY 456
W+ ++S++ TT L D +
Sbjct: 240 NWTNTQVRSSLENTTTKLGDSF 261
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT M+ PH+SG+VAL++A
Sbjct: 218 QPEVSAPGVDILSTY-----------------PDDSYETLMGTXMATPHVSGVVALIQAA 260
Query: 434 H 434
+
Sbjct: 261 Y 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 17/61 (27%)
Query: 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI 433
+P+++APGV+IL+++ P +++ GT M+ PH+SG+VAL++A
Sbjct: 218 QPEVSAPGVDILSTY-----------------PDDSYETLMGTCMATPHVSGVVALIQAA 260
Query: 434 H 434
+
Sbjct: 261 Y 261
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL----K 431
D+AAPG +IL++ + +D + +GTSM+ PH+SG+ AL+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSDA----------YSFMAGTSMATPHVSGVAALVISAAN 294
Query: 432 AIHPTWSPAAIKSAIVTTAS 451
+++ +PA +K +V+T S
Sbjct: 295 SVNKNLTPAELKDVLVSTTS 314
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL----K 431
D+AAPG +IL++ + +D + +GTSM+ PH+SG+ AL+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSDA----------YSFMAGTSMATPHVSGVAALVISAAN 294
Query: 432 AIHPTWSPAAIKSAIVTTAS 451
+++ +PA +K +V+T S
Sbjct: 295 SVNKNLTPAELKDVLVSTTS 314
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL----K 431
D+AAPG +IL++ + +D + +GTSM+ PH+SG+ AL+
Sbjct: 245 DLAAPGQDILSTVDSGTRRPVSDA----------YSFMAGTSMATPHVSGVAALVISAAN 294
Query: 432 AIHPTWSPAAIKSAIVTTAS 451
+++ +PA +K +V+T S
Sbjct: 295 SVNKNLTPAELKDVLVSTTS 314
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 377 IAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL----KA 432
+AAPG NIL++ ++ Q V +Y +++GTSM+ PH+SG+ AL+ +
Sbjct: 247 LAAPGTNILST----IDVGQAGPVRSSY------GMKAGTSMAAPHVSGVAALVISAANS 296
Query: 433 IHPTWSPAAIKSAIVTTAS 451
I T +P+ + +V T S
Sbjct: 297 IGKTLTPSELSDILVRTTS 315
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 14/79 (17%)
Query: 377 IAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL----KA 432
+AAPG NIL++ ++ Q V +Y +++GTSM+ PH+SG+ AL+ +
Sbjct: 247 LAAPGTNILST----IDVGQAGPVRSSY------GMKAGTSMAAPHVSGVAALVISAANS 296
Query: 433 IHPTWSPAAIKSAIVTTAS 451
I T +P+ + +V T S
Sbjct: 297 IGKTLTPSELSDILVRTTS 315
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 29/119 (24%)
Query: 373 LKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA 432
+KPDIAAPG +IL+S + + SGTS S P ++GI LL+
Sbjct: 380 IKPDIAAPGQDILSS-----------------VANNKYAKLSGTSXSAPLVAGIXGLLQK 422
Query: 433 IHPTWSPAAIKS------AIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKA 485
+ T P S V +S Y + A +P +Q G G VD KA
Sbjct: 423 QYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQ------GAGAVDAKKA 475
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 377 IAAPGVNILASWSPVSNLEQTDHVTPNYIPQFN---FKVESGTSMSCPHISGIVALLKAI 433
+ APGV IL++ ++ H +P N + GTSM+ PH++G+VA+L
Sbjct: 340 VGAPGVTILSTVPGEDSIGYEGH--NENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 434 HPTWSPAAIKSAIVTTA 450
P P I+ + TA
Sbjct: 398 FPNAKPWQIRKLLENTA 414
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 18/82 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
++ APGV++ +++ P + +GTSM+ PH++G AL+ + +P
Sbjct: 196 EVMAPGVSVYSTY-----------------PSNTYTSLNGTSMASPHVAGAAALILSKYP 238
Query: 436 TWSPAAIKSAIVTTAS-LKDEY 456
T S + +++ + +TA+ L D +
Sbjct: 239 TLSASQVRNRLSSTATNLGDSF 260
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 409 NFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450
+++ +GTSM+ PH+SG+ L+ + HP S + +++A+ TA
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GTSM+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 210 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GTSM+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 210 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GTSM+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GTSM+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GTSM+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GTSM+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 209 PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 406 PQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451
P + +GT M+ PH++G AL+ + HP S + +++ + +TA+
Sbjct: 209 PTNTYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 17/69 (24%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
+I+APG ++ ++W Y +N SGTSM+ PH+SG+ A + A +P
Sbjct: 226 EISAPGSSVYSTW---------------YNGGYN--TISGTSMATPHVSGLAAKIWAENP 268
Query: 436 TWSPAAIKS 444
+ S ++S
Sbjct: 269 SLSNTQLRS 277
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI PG +IL++W S + SGTSM+ PH++G+ A L +
Sbjct: 200 DIFGPGTDILSTWIGGST-----------------RSISGTSMATPHVAGLAAYLMTLGK 242
Query: 436 TWSPAAIKSAIVTTASLKD 454
T + +A + I TA+ D
Sbjct: 243 TTAASACR-YIADTANKGD 260
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 17/57 (29%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA 432
D+ APGV+I+++ +T N + SGTSM+ PH++G+ ALL +
Sbjct: 202 DVVAPGVDIVST------------ITGN-----RYAYMSGTSMASPHVAGLAALLAS 241
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+AAPG +I +++ P + SGTSM+ PH++G+ LL +
Sbjct: 201 DVAAPGSSIYSTY-----------------PTSTYASLSGTSMATPHVAGVAGLLASQGR 243
Query: 436 TWSPAAIKSAIVTTA 450
S + I++AI TA
Sbjct: 244 --SASNIRAAIENTA 256
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI PG +IL++W S + SGTSM+ PH++G+ A L +
Sbjct: 200 DIFGPGTSILSTWIGGST-----------------RSISGTSMATPHVAGLAAYLMTLGK 242
Query: 436 TWSPAAIKSAIVTTASLKD 454
T + +A + I TA+ D
Sbjct: 243 TTAASACR-YIADTANKGD 260
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 18/79 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
DI PG +IL++W S + SGTSM+ PH++G+ A L +
Sbjct: 200 DIFGPGTSILSTWIGGST-----------------RSISGTSMATPHVAGLAAYLMTLGK 242
Query: 436 TWSPAAIKSAIVTTASLKD 454
T + +A + I TA+ D
Sbjct: 243 TTAASACR-YIADTANKGD 260
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 17/79 (21%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
+I+APG + ++W + SGTSM+ PH +G+ A + A P
Sbjct: 225 EISAPGAAVYSTWF-----------------DGGYATISGTSMASPHAAGLAAKIWAQSP 267
Query: 436 TWSPAAIKSAIVTTASLKD 454
S ++ + T AS+ D
Sbjct: 268 AASNVDVRGELQTRASVND 286
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 17/69 (24%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
+I+APG ++ ++W Y +N SGT M+ PH+SG+ A + A +P
Sbjct: 226 EISAPGSSVYSTW---------------YNGGYN--TISGTXMATPHVSGLAAKIWAENP 268
Query: 436 TWSPAAIKS 444
+ S ++S
Sbjct: 269 SLSNTQLRS 277
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 17/59 (28%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH 434
DI APG NIL++W T N I SGTSM+ PHI G+ A L +
Sbjct: 203 DIFAPGSNILSTW---------IGGTTNTI--------SGTSMATPHIVGLGAYLAGLE 244
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 373 LKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL-- 430
+KPD+ APG IL S S+L N+ ++ + GTSM+ P ++G VA L
Sbjct: 216 IKPDVMAPGTFIL---SARSSLAPDSSFWANHDSKYAYM--GGTSMATPIVAGNVAQLRE 270
Query: 431 -----KAIHPTWSPAAIKSAIVTTAS 451
+ I P P+ +K+A++ A+
Sbjct: 271 HFVKNRGITP--KPSLLKAALIAGAA 294
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 19/75 (25%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+AAPG I +++ P + SGTSM+ PH++G+ LL +
Sbjct: 201 DVAAPGSWIYSTY-----------------PTSTYASLSGTSMATPHVAGVAGLLASQGR 243
Query: 436 TWSPAAIKSAIVTTA 450
S + I++AI TA
Sbjct: 244 --SASNIRAAIENTA 256
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP 435
D+ APG I ++W +K SGTSM+ PH++G+ AL +
Sbjct: 196 DLFAPGSQIKSAWY-----------------DGGYKTISGTSMATPHVAGVAALYLQENN 238
Query: 436 TWSPAAIKSAIVTTAS 451
+P + + + AS
Sbjct: 239 GLTPLQLTGLLNSRAS 254
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 373 LKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL-- 430
+KPD+ APG IL S S+L N+ ++ + GTS + P ++G VA L
Sbjct: 216 IKPDVMAPGTFIL---SARSSLAPDSSFWANHDSKYAY--XGGTSXATPIVAGNVAQLRE 270
Query: 431 -----KAIHPTWSPAAIKSAIVTTAS 451
+ I P P+ +K+A++ A+
Sbjct: 271 HFVKNRGITP--KPSLLKAALIAGAA 294
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 412 VESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVA--------- 462
V +GTS + P SG +ALL + +P S ++ + +A+ D Q ++
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKV 390
Query: 463 ------EGAPHKQADPF---DYGGGHVDPNKAMD 487
EG A + YG G +D NKA++
Sbjct: 391 RDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALE 424
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 17/55 (30%)
Query: 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALL 430
DI APG +I ++W +T+ + SGTSM+ PHI+G+ A L
Sbjct: 201 DIFAPGTSITSTWIG----GRTNTI-------------SGTSMATPHIAGLAAYL 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,815,339
Number of Sequences: 62578
Number of extensions: 687949
Number of successful extensions: 1938
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1699
Number of HSP's gapped (non-prelim): 204
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)