Query 006598
Match_columns 639
No_of_seqs 387 out of 2671
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 11:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07478 Peptidases_S8_CspA-lik 100.0 6.6E-50 1.4E-54 434.1 26.3 405 1-478 11-455 (455)
2 cd04852 Peptidases_S8_3 Peptid 100.0 1.2E-48 2.7E-53 407.6 28.4 271 1-451 37-307 (307)
3 cd07497 Peptidases_S8_14 Pepti 100.0 2.1E-47 4.5E-52 395.1 23.3 239 70-450 51-311 (311)
4 PTZ00262 subtilisin-like prote 100.0 1.1E-47 2.4E-52 416.2 20.8 229 69-492 372-618 (639)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 1.2E-45 2.7E-50 392.0 26.9 298 1-487 18-346 (346)
6 cd07479 Peptidases_S8_SKI-1_li 100.0 1.1E-45 2.4E-50 374.0 22.6 203 71-453 41-253 (255)
7 cd05562 Peptidases_S53_like Pe 100.0 1.3E-45 2.7E-50 376.3 22.3 228 71-487 44-274 (275)
8 cd07474 Peptidases_S8_subtilis 100.0 5.8E-44 1.3E-48 370.9 29.2 284 1-485 9-295 (295)
9 cd07483 Peptidases_S8_Subtilis 100.0 1.7E-44 3.8E-49 372.6 23.3 264 1-451 8-291 (291)
10 cd05561 Peptidases_S8_4 Peptid 100.0 3.4E-44 7.3E-49 359.8 23.1 204 71-478 32-239 (239)
11 cd07489 Peptidases_S8_5 Peptid 100.0 5.9E-44 1.3E-48 373.4 25.5 277 1-489 20-300 (312)
12 cd07493 Peptidases_S8_9 Peptid 100.0 1.8E-43 3.8E-48 360.5 23.6 240 1-451 7-261 (261)
13 cd07476 Peptidases_S8_thiazoli 100.0 2.7E-43 5.8E-48 358.2 24.4 203 71-454 46-253 (267)
14 cd07481 Peptidases_S8_Bacillop 100.0 2.2E-42 4.7E-47 352.9 23.1 202 69-451 46-264 (264)
15 cd04847 Peptidases_S8_Subtilis 100.0 1.4E-42 3.1E-47 359.3 20.1 237 71-451 34-291 (291)
16 cd07487 Peptidases_S8_1 Peptid 100.0 1.6E-41 3.4E-46 346.9 24.5 220 70-451 39-264 (264)
17 cd04857 Peptidases_S8_Tripepti 100.0 3.1E-41 6.7E-46 355.4 23.3 220 72-452 182-411 (412)
18 cd07490 Peptidases_S8_6 Peptid 100.0 6.4E-41 1.4E-45 340.5 23.5 216 70-451 38-254 (254)
19 cd07485 Peptidases_S8_Fervidol 100.0 1.6E-40 3.4E-45 340.9 24.2 209 70-449 56-273 (273)
20 cd07496 Peptidases_S8_13 Pepti 100.0 1.4E-40 3E-45 343.5 23.8 209 70-449 66-285 (285)
21 cd07498 Peptidases_S8_15 Pepti 100.0 1.6E-40 3.5E-45 335.0 22.4 207 70-449 35-242 (242)
22 cd07484 Peptidases_S8_Thermita 100.0 8.8E-40 1.9E-44 333.2 23.7 196 71-453 64-259 (260)
23 cd07473 Peptidases_S8_Subtilis 100.0 1.1E-39 2.4E-44 332.3 24.3 198 69-451 57-259 (259)
24 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.2E-39 2.7E-44 331.1 22.9 191 71-452 59-255 (255)
25 cd07477 Peptidases_S8_Subtilis 100.0 1.9E-39 4.1E-44 324.5 23.0 193 70-449 35-229 (229)
26 PF00082 Peptidase_S8: Subtila 100.0 1.6E-40 3.6E-45 342.7 14.6 273 1-487 5-282 (282)
27 cd04842 Peptidases_S8_Kp43_pro 100.0 5.8E-39 1.2E-43 333.1 23.7 266 1-451 14-293 (293)
28 cd04843 Peptidases_S8_11 Pepti 100.0 5.1E-39 1.1E-43 328.0 21.6 205 71-451 47-277 (277)
29 cd07482 Peptidases_S8_Lantibio 100.0 8E-39 1.7E-43 332.2 22.3 107 69-187 47-159 (294)
30 cd07480 Peptidases_S8_12 Pepti 100.0 1.3E-38 2.7E-43 330.5 22.6 227 71-483 42-296 (297)
31 cd07491 Peptidases_S8_7 Peptid 100.0 4.8E-39 1E-43 323.1 18.5 116 72-205 46-171 (247)
32 cd07494 Peptidases_S8_10 Pepti 100.0 4.6E-38 1E-42 324.7 23.8 112 70-206 56-175 (298)
33 cd07492 Peptidases_S8_8 Peptid 100.0 5.8E-38 1.3E-42 312.1 22.1 184 70-451 39-222 (222)
34 KOG1153 Subtilisin-related pro 100.0 4.2E-38 9.2E-43 318.7 13.3 190 72-452 254-462 (501)
35 cd04848 Peptidases_S8_Autotran 100.0 6.7E-36 1.5E-40 305.6 22.0 205 70-451 41-267 (267)
36 cd04059 Peptidases_S8_Protein_ 100.0 2.3E-36 5E-41 314.2 16.9 198 73-451 82-297 (297)
37 cd07488 Peptidases_S8_2 Peptid 100.0 1.5E-34 3.2E-39 289.6 15.9 193 71-449 33-246 (247)
38 KOG1114 Tripeptidyl peptidase 100.0 3.8E-33 8.3E-38 301.8 20.0 240 74-487 309-557 (1304)
39 cd00306 Peptidases_S8_S53 Pept 100.0 2.7E-30 5.8E-35 258.9 23.3 197 70-449 39-241 (241)
40 KOG4266 Subtilisin kexin isozy 100.0 2.2E-30 4.7E-35 269.4 19.0 221 72-487 235-465 (1033)
41 COG1404 AprE Subtilisin-like s 99.9 5E-22 1.1E-26 220.8 20.5 201 71-451 179-397 (508)
42 cd04056 Peptidases_S53 Peptida 99.7 2.1E-17 4.7E-22 175.6 15.4 105 99-207 79-198 (361)
43 KOG3526 Subtilisin-like propro 99.6 2.4E-15 5.2E-20 149.8 5.5 97 408-507 376-474 (629)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 3E-11 6.5E-16 111.2 11.6 114 234-367 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 1.4E-10 2.9E-15 104.6 12.7 120 213-341 2-125 (126)
46 cd04816 PA_SaNapH_like PA_SaNa 98.8 1.5E-08 3.3E-13 90.5 8.8 85 255-341 29-121 (122)
47 cd02122 PA_GRAIL_like PA _GRAI 98.8 2.8E-08 6E-13 90.3 10.1 88 253-342 42-138 (138)
48 cd02129 PA_hSPPL_like PA_hSPPL 98.8 2.3E-08 4.9E-13 87.8 8.5 81 253-335 28-115 (120)
49 PF06280 DUF1034: Fn3-like dom 98.7 1.3E-07 2.7E-12 83.3 12.1 88 539-627 1-112 (112)
50 cd02127 PA_hPAP21_like PA_hPAP 98.7 5.6E-08 1.2E-12 85.8 9.6 85 255-342 21-116 (118)
51 cd02130 PA_ScAPY_like PA_ScAPY 98.7 1.4E-07 3E-12 84.4 12.2 84 255-341 31-121 (122)
52 PF02225 PA: PA domain; Inter 98.7 1.7E-08 3.6E-13 87.0 5.7 78 253-332 17-101 (101)
53 cd04818 PA_subtilisin_1 PA_sub 98.7 1.1E-07 2.5E-12 84.4 9.2 85 254-341 26-117 (118)
54 cd02125 PA_VSR PA_VSR: Proteas 98.6 2.4E-07 5.3E-12 83.0 10.9 85 255-341 22-126 (127)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.6 1.3E-07 2.9E-12 84.8 9.1 83 255-340 27-124 (126)
56 cd02124 PA_PoS1_like PA_PoS1_l 98.6 1.6E-07 3.5E-12 84.3 9.3 86 253-341 39-128 (129)
57 cd02132 PA_GO-like PA_GO-like: 98.6 1.4E-07 3E-12 86.2 8.9 82 255-341 48-138 (139)
58 cd00538 PA PA: Protease-associ 98.6 2.1E-07 4.6E-12 83.5 8.9 85 254-340 29-124 (126)
59 cd04813 PA_1 PA_1: Protease-as 98.6 2.1E-07 4.6E-12 82.0 8.5 79 253-335 25-112 (117)
60 cd04817 PA_VapT_like PA_VapT_l 98.5 4E-07 8.6E-12 82.3 8.6 72 262-335 49-134 (139)
61 cd02123 PA_C_RZF_like PA_C-RZF 98.5 6.9E-07 1.5E-11 82.9 9.0 81 255-337 50-142 (153)
62 cd04819 PA_2 PA_2: Protease-as 98.3 1.2E-05 2.7E-10 72.2 11.9 75 262-338 37-123 (127)
63 COG4934 Predicted protease [Po 97.7 0.00026 5.6E-09 82.7 11.4 114 74-202 270-395 (1174)
64 cd04815 PA_M28_2 PA_M28_2: Pro 97.4 0.00041 9E-09 62.9 6.9 76 264-341 34-133 (134)
65 KOG3525 Subtilisin-like propro 97.3 0.00091 2E-08 72.4 9.5 74 412-487 251-324 (431)
66 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0013 2.8E-08 62.3 5.8 68 265-334 51-155 (183)
67 KOG2442 Uncharacterized conser 97.0 0.0018 4E-08 68.4 7.2 78 265-344 91-177 (541)
68 cd04822 PA_M28_1_3 PA_M28_1_3: 96.5 0.0089 1.9E-07 55.0 7.6 77 255-331 33-131 (151)
69 PF14874 PapD-like: Flagellar- 96.4 0.089 1.9E-06 45.0 13.1 82 546-630 20-101 (102)
70 cd04814 PA_M28_1 PA_M28_1: Pro 96.3 0.0059 1.3E-07 55.5 4.8 64 235-307 20-101 (142)
71 cd04820 PA_M28_1_1 PA_M28_1_1: 96.2 0.0083 1.8E-07 54.2 5.2 51 255-307 35-97 (137)
72 PF10633 NPCBM_assoc: NPCBM-as 95.9 0.029 6.2E-07 45.6 6.7 63 546-608 5-69 (78)
73 cd02131 PA_hNAALADL2_like PA_h 95.4 0.017 3.7E-07 52.5 3.9 41 266-308 37-77 (153)
74 KOG3920 Uncharacterized conser 95.3 0.019 4.2E-07 51.6 3.9 85 253-340 72-169 (193)
75 KOG4628 Predicted E3 ubiquitin 95.2 0.074 1.6E-06 55.3 8.4 78 256-335 63-150 (348)
76 cd02121 PA_GCPII_like PA_GCPII 95.1 0.021 4.5E-07 56.0 3.8 41 265-307 67-107 (220)
77 PF11614 FixG_C: IG-like fold 93.1 1.1 2.3E-05 39.5 10.4 56 547-603 32-87 (118)
78 PF06030 DUF916: Bacterial pro 90.0 3 6.4E-05 37.0 9.6 70 545-616 26-119 (121)
79 PF00345 PapD_N: Pili and flag 87.8 8.6 0.00019 33.9 11.2 70 546-617 14-90 (122)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 84.4 1.2 2.7E-05 41.3 4.0 45 262-306 42-103 (157)
81 COG1470 Predicted membrane pro 83.6 9.3 0.0002 41.2 10.4 71 546-617 397-469 (513)
82 TIGR02745 ccoG_rdxA_fixG cytoc 74.7 14 0.00029 40.5 8.8 54 547-601 347-400 (434)
83 COG1470 Predicted membrane pro 72.5 34 0.00075 37.1 10.7 56 546-602 284-345 (513)
84 PF00635 Motile_Sperm: MSP (Ma 69.2 27 0.00058 29.7 7.9 53 546-601 18-70 (109)
85 smart00237 Calx_beta Domains i 69.1 55 0.0012 27.1 9.4 62 535-599 7-74 (90)
86 TIGR00845 caca sodium/calcium 68.6 1.3E+02 0.0027 36.2 15.2 64 534-600 404-474 (928)
87 PF07610 DUF1573: Protein of u 64.0 31 0.00066 24.6 5.9 44 552-598 2-45 (45)
88 PF05506 DUF756: Domain of unk 60.9 53 0.0011 27.1 7.8 48 546-598 18-65 (89)
89 PF12690 BsuPI: Intracellular 60.2 51 0.0011 26.9 7.4 53 548-601 2-71 (82)
90 PF07718 Coatamer_beta_C: Coat 59.8 86 0.0019 28.5 9.2 67 548-616 71-138 (140)
91 PLN03080 Probable beta-xylosid 52.1 54 0.0012 38.9 8.6 51 547-600 685-744 (779)
92 PF07705 CARDB: CARDB; InterP 51.8 1.3E+02 0.0029 24.6 9.6 53 545-601 18-72 (101)
93 PF03160 Calx-beta: Calx-beta 50.5 1.1E+02 0.0023 25.6 8.2 73 533-606 14-91 (100)
94 PRK15098 beta-D-glucoside gluc 46.4 70 0.0015 37.9 8.5 69 530-601 642-728 (765)
95 PF05753 TRAP_beta: Translocon 45.7 2.1E+02 0.0045 27.3 10.0 63 546-611 38-106 (181)
96 PF08821 CGGC: CGGC domain; I 44.4 1.3E+02 0.0028 26.0 7.7 73 103-178 30-104 (107)
97 PF08260 Kinin: Insect kinin p 43.5 11 0.00023 16.6 0.4 6 359-364 3-8 (8)
98 smart00635 BID_2 Bacterial Ig- 42.3 72 0.0016 25.7 5.6 39 575-618 4-42 (81)
99 PF02845 CUE: CUE domain; Int 42.1 26 0.00057 24.4 2.5 25 427-451 5-29 (42)
100 PF00927 Transglut_C: Transglu 38.2 2.5E+02 0.0054 23.8 8.9 55 545-601 14-77 (107)
101 PRK13203 ureB urease subunit b 36.1 1.2E+02 0.0025 25.9 5.8 16 546-561 18-33 (102)
102 cd00407 Urease_beta Urease bet 35.6 1.2E+02 0.0025 25.9 5.7 16 546-561 18-33 (101)
103 PRK15308 putative fimbrial pro 33.9 1.8E+02 0.0039 29.0 7.9 53 547-600 32-100 (234)
104 TIGR00192 urease_beta urease, 33.9 1.4E+02 0.003 25.4 5.8 16 546-561 18-33 (101)
105 PRK15019 CsdA-binding activato 33.2 42 0.0009 30.8 3.0 34 410-444 76-109 (147)
106 PRK13202 ureB urease subunit b 32.8 1.5E+02 0.0032 25.4 5.9 14 548-561 21-34 (104)
107 KOG2733 Uncharacterized membra 32.8 53 0.0012 34.6 4.0 67 103-184 77-148 (423)
108 TIGR03391 FeS_syn_CsdE cystein 31.9 46 0.00099 30.2 3.0 35 410-445 71-105 (138)
109 PF13940 Ldr_toxin: Toxin Ldr, 31.0 41 0.00089 22.2 1.8 13 418-430 14-26 (35)
110 KOG2018 Predicted dinucleotide 30.1 73 0.0016 32.9 4.4 78 103-181 137-245 (430)
111 PF14016 DUF4232: Protein of u 29.8 3.9E+02 0.0085 23.6 9.3 79 546-626 18-112 (131)
112 smart00546 CUE Domain that may 29.8 78 0.0017 22.1 3.4 25 426-450 5-29 (43)
113 PRK09296 cysteine desufuration 29.6 46 0.001 30.2 2.7 34 410-444 66-99 (138)
114 TIGR01451 B_ant_repeat conserv 29.5 2.3E+02 0.005 20.8 6.1 39 545-585 11-50 (53)
115 PF00699 Urease_beta: Urease b 29.4 1.6E+02 0.0034 25.0 5.5 17 546-562 17-33 (100)
116 PF01345 DUF11: Domain of unkn 29.1 1.4E+02 0.003 23.6 5.2 32 545-576 40-72 (76)
117 PRK09918 putative fimbrial cha 28.8 5.8E+02 0.013 25.2 11.7 53 546-599 38-93 (230)
118 PRK13201 ureB urease subunit b 28.3 1.7E+02 0.0037 26.1 5.8 16 546-561 18-33 (136)
119 PRK15192 fimbrial chaperone Bc 28.2 6.1E+02 0.013 25.3 11.1 59 546-607 36-106 (234)
120 PRK13205 ureB urease subunit b 27.5 1.8E+02 0.0038 26.7 5.8 16 546-561 18-33 (162)
121 PF02657 SufE: Fe-S metabolism 26.9 66 0.0014 28.6 3.1 33 412-445 59-91 (125)
122 PF04744 Monooxygenase_B: Mono 26.6 8E+02 0.017 26.1 12.3 53 545-599 262-334 (381)
123 COG2166 sufE Cysteine desulfur 26.6 59 0.0013 29.6 2.8 32 412-444 73-104 (144)
124 PF04255 DUF433: Protein of un 25.2 64 0.0014 24.1 2.4 40 408-447 9-54 (56)
125 PF13598 DUF4139: Domain of un 24.6 3.5E+02 0.0076 28.0 8.7 22 548-569 244-265 (317)
126 PRK13204 ureB urease subunit b 23.6 2.3E+02 0.0049 26.1 5.8 16 546-561 41-56 (159)
127 cd04857 Peptidases_S8_Tripepti 22.2 39 0.00085 36.7 0.9 14 1-14 30-43 (412)
128 PF11611 DUF4352: Domain of un 22.2 5E+02 0.011 22.2 8.0 56 547-603 37-104 (123)
129 PRK08227 autoinducer 2 aldolas 22.1 2.7E+02 0.0059 28.3 6.9 24 282-305 206-229 (264)
130 PF02601 Exonuc_VII_L: Exonucl 21.7 2.7E+02 0.0059 28.9 7.2 73 107-184 39-118 (319)
131 PRK13198 ureB urease subunit b 21.4 2.7E+02 0.0058 25.6 5.8 16 546-561 46-61 (158)
No 1
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=6.6e-50 Score=434.13 Aligned_cols=405 Identities=22% Similarity=0.219 Sum_probs=256.0
Q ss_pred CccccCCCCCCCCC-CCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCch
Q 006598 1 MDTGIWPESESFKD-ENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGT 79 (639)
Q Consensus 1 IDtGId~~Hp~F~~-~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGT 79 (639)
|||||||.||+|++ ++.+++...|++....+. ......++..|.++....... ...+.+....+|..||||
T Consensus 11 IDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~------~~~~~~~~~~~~~~~i~~~~~--~~~p~~~~~~~D~~GHGT 82 (455)
T cd07478 11 IDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP------PPGGYYGGGEYTEEIINAALA--SDNPYDIVPSRDENGHGT 82 (455)
T ss_pred EECCCCCCCHHHccCCCCchhHHhhhCcCCCCC------CCccccCceEEeHHHHHHHHh--cCCccccCcCCCCCCchH
Confidence 79999999999986 567899999999877543 222333344443321111000 012334455678999999
Q ss_pred hhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCC----------CCHHHHHHHHHHHHhC-----CCcEE
Q 006598 80 HTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG----------CSSADLLAAFDDATFD-----GVDVI 144 (639)
Q Consensus 80 HVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~----------~~~~~i~~ai~~a~~~-----g~dVI 144 (639)
||||||||+..+ ...+.||||+|+|+++|++...+. +...+++.||+|+++. .+.||
T Consensus 83 hvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VI 154 (455)
T cd07478 83 HVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVI 154 (455)
T ss_pred HHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 999999999643 245699999999999999987543 6789999999999874 46799
Q ss_pred EEccCCCCCCCCCccchHHHHHHHhHhC-CcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006598 145 SLSLGSSLPLSTYVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG 223 (639)
Q Consensus 145 n~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g 223 (639)
|||||... +++...++++++++.+.++ |++||+||||+|....+...... .....-...+.++.+.....
T Consensus 155 nlSlG~~~-g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~~~~~ 225 (455)
T cd07478 155 NISLGTNF-GSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGEKGFN 225 (455)
T ss_pred EEccCcCC-CCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCCcceE
Confidence 99999986 7777888999999988766 99999999999975444432100 00000001111222111000
Q ss_pred EEeecCcCCCCceeeeEEccccccCCCCc------------cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhh
Q 006598 224 QAFYNGKEDLNKFYPIVIGKDIATFDADE------------GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTV 291 (639)
Q Consensus 224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~------------~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~ 291 (639)
..+..... ..-...++.+.-........ .....|-. ...+....|.-.+.-+ . .-
T Consensus 226 ~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~-y~~~~~~~g~~~i~i~----------~-~~ 292 (455)
T cd07478 226 LEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVY-YYLPEPYTGDQLIFIR----------F-KN 292 (455)
T ss_pred EEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEE-EcCCCCCCCCeEEEEE----------c-cC
Confidence 00000000 00011111111000000000 00000000 0111222222222222 1 23
Q ss_pred hcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEec----eeeeccc-CCCeeecccCCCCC
Q 006598 292 LDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFT----KTVIGQQ-ISPEVAFFSSRGPS 366 (639)
Q Consensus 292 ~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~----~~~~~~~-~~~~~a~fSS~Gp~ 366 (639)
...|.+-+.++........+..++|...+...+..+ +.+....++++... .++.... ..+.++.||||||+
T Consensus 293 ~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f----~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~ 368 (455)
T cd07478 293 IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRF----LEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPT 368 (455)
T ss_pred CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEe----ecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcC
Confidence 445888888887666555566777766655444332 23333444433322 2333332 34569999999999
Q ss_pred CCCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC------CCCCHH
Q 006598 367 SLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH------PTWSPA 440 (639)
Q Consensus 367 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~ls~~ 440 (639)
. ++++||||+|||++|+++.+ .+.|..++|||||||||||++|||+|.+ |.|+++
T Consensus 369 ~--~~~~kpdi~APG~~i~s~~~-----------------~~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~ 429 (455)
T cd07478 369 R--DGRIKPDIAAPGVNILTASP-----------------GGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGE 429 (455)
T ss_pred C--CCCcCceEEecCCCEEEeec-----------------CCcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHH
Confidence 8 89999999999999999998 5789999999999999999999999965 567999
Q ss_pred HHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCC
Q 006598 441 AIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGG 478 (639)
Q Consensus 441 ~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G 478 (639)
+||++|++||+++ ....+++.+||||
T Consensus 430 ~ik~~L~~tA~~~------------~~~~~pn~~~GyG 455 (455)
T cd07478 430 KIKTYLIRGARRR------------PGDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHHhCccC------------CCCCCCCCCCCCC
Confidence 9999999999975 2346778899998
No 2
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-48 Score=407.56 Aligned_cols=271 Identities=56% Similarity=0.887 Sum_probs=231.1
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006598 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH 80 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH 80 (639)
||||||++||+|++....+++..|++.|+.+..++...|++|+++.++|.+++...... ....+..++.|..|||||
T Consensus 37 iDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~---~~~~~~~~~~d~~gHGT~ 113 (307)
T cd04852 37 LDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGF---NSDGEYRSPRDYDGHGTH 113 (307)
T ss_pred EeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEEEEEEcccchhhccCc---ccccCCCCCccCCCCchh
Confidence 79999999999999988999999999999998887788999999999999875543221 123456678899999999
Q ss_pred hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006598 81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD 160 (639)
Q Consensus 81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 160 (639)
|||||||+...+....|...+.+.||||+|+|+.+|++...+.+..+++++||++|++++++|||||||.... ....+
T Consensus 114 VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~--~~~~~ 191 (307)
T cd04852 114 TASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGSP--DPYED 191 (307)
T ss_pred hhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CcccC
Confidence 9999999987766666666677899999999999999987678889999999999999999999999998741 34567
Q ss_pred hHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeE
Q 006598 161 IISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIV 240 (639)
Q Consensus 161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~ 240 (639)
.+..++.++.++|++||+||||+|+...+.++..||+++|||++
T Consensus 192 ~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~------------------------------------ 235 (307)
T cd04852 192 PIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST------------------------------------ 235 (307)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc------------------------------------
Confidence 78888899999999999999999988888888889999999521
Q ss_pred EccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEE
Q 006598 241 IGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQV 320 (639)
Q Consensus 241 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i 320 (639)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCC
Q 006598 321 DFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHV 400 (639)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 400 (639)
+||||+|||.+|++++......... .
T Consensus 236 ----------------------------------------------------~~~di~apG~~i~~~~~~~~~~~~~-~- 261 (307)
T cd04852 236 ----------------------------------------------------LKPDIAAPGVDILAAWTPEGADPGD-A- 261 (307)
T ss_pred ----------------------------------------------------CccceeeccCceeecccCccccccC-C-
Confidence 4779999999999998743111100 1
Q ss_pred CCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 401 TPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 401 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
. ...|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 262 ----~-~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 262 ----R-GEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ----C-CCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 1 578999999999999999999999999999999999999999985
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-47 Score=395.10 Aligned_cols=239 Identities=31% Similarity=0.245 Sum_probs=167.3
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccc-cCccceeecCCCeEEEEEeecCCCCCCHHHHHH-------HHHHH--HhC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGL-AQGLARGGAPLAWLAIYKICWAPGGCSSADLLA-------AFDDA--TFD 139 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~-------ai~~a--~~~ 139 (639)
.+.|.+||||||||||||......+..++ ....+.||||+|+|+.+|++...+......+.. +++|. .++
T Consensus 51 ~~~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 130 (311)
T cd07497 51 IMYDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGP 130 (311)
T ss_pred CCCCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCC
Confidence 46789999999999999986433222211 123579999999999999997533333333333 34443 468
Q ss_pred CCcEEEEccCCCCCCCC---CccchHHHHHHHh-HhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEE
Q 006598 140 GVDVISLSLGSSLPLST---YVDDIISIGSFHA-VAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAI 213 (639)
Q Consensus 140 g~dVIn~SlG~~~~~~~---~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~ 213 (639)
+++|||||||....... ...+..+..++.+ .++|+++|+||||+|+...++ +..++++|+|||++.....+.
T Consensus 131 ~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~-- 208 (311)
T cd07497 131 RVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF-- 208 (311)
T ss_pred CceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch--
Confidence 99999999998641100 1122334444433 389999999999999865444 346799999999754310000
Q ss_pred EeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhc
Q 006598 214 TMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLD 293 (639)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~ 293 (639)
+...+
T Consensus 209 -----------------------~~~~~---------------------------------------------------- 213 (311)
T cd07497 209 -----------------------YLFGY---------------------------------------------------- 213 (311)
T ss_pred -----------------------hhhcc----------------------------------------------------
Confidence 00000
Q ss_pred CCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCc
Q 006598 294 SGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVL 373 (639)
Q Consensus 294 ~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 373 (639)
.....+.++.||||||+. ++++
T Consensus 214 --------------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~ 235 (311)
T cd07497 214 --------------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDP 235 (311)
T ss_pred --------------------------------------------------------ccCCCCCccccccCCCCc--ccCC
Confidence 001235789999999998 8999
Q ss_pred CCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHH
Q 006598 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP------TWSPAAIKSAIV 447 (639)
Q Consensus 374 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~ls~~~vk~~L~ 447 (639)
||||+|||++|+++.+........ .....|..++|||||||||||++|||+|++| .+++++||++|+
T Consensus 236 kPdv~ApG~~i~s~~~~~~~~~~~-------~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~ 308 (311)
T cd07497 236 KPDLAAIGAFAWAPGRVLDSGGAL-------DGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILM 308 (311)
T ss_pred CCceeccCcceEeecccCCCCccc-------CCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHH
Confidence 999999999999987643210000 0035799999999999999999999999876 689999999999
Q ss_pred hcC
Q 006598 448 TTA 450 (639)
Q Consensus 448 ~TA 450 (639)
+||
T Consensus 309 ~tA 311 (311)
T cd07497 309 STA 311 (311)
T ss_pred hcC
Confidence 997
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.1e-47 Score=416.21 Aligned_cols=229 Identities=22% Similarity=0.207 Sum_probs=178.6
Q ss_pred CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006598 69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSL 148 (639)
Q Consensus 69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~Sl 148 (639)
.+|.|..||||||||||||...+ ..++.||||+|+|+++|+++..+.+..+++++||+||++.|++||||||
T Consensus 372 ~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 372 GGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 35789999999999999998542 2346899999999999999876778899999999999999999999999
Q ss_pred CCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--------------cC----CCCcEEEEEeeccCCccc
Q 006598 149 GSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--------------IN----TAPWVITVAASTIDRAFP 210 (639)
Q Consensus 149 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------------~~----~ap~vitVgA~~~~~~~~ 210 (639)
|... ....+..++.+|.++|++||+||||+|+..... +. ..++||+|||+..+.
T Consensus 444 G~~~-----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~--- 515 (639)
T PTZ00262 444 SFDE-----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK--- 515 (639)
T ss_pred ccCC-----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC---
Confidence 9763 345678899999999999999999998643211 11 135566666543210
Q ss_pred eEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHh
Q 006598 211 TAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAART 290 (639)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~ 290 (639)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCC
Q 006598 291 VLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSP 370 (639)
Q Consensus 291 ~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 370 (639)
...-.++.||++|.
T Consensus 516 -------------------------------------------------------------~~~~s~s~~Snyg~----- 529 (639)
T PTZ00262 516 -------------------------------------------------------------NNQYSLSPNSFYSA----- 529 (639)
T ss_pred -------------------------------------------------------------CCcccccccccCCC-----
Confidence 00012345566652
Q ss_pred CCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC
Q 006598 371 SVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTA 450 (639)
Q Consensus 371 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA 450 (639)
.++||+|||++|+|+++ ++.|..++|||||||||||+||||++++|+|++.||+++|++||
T Consensus 530 --~~VDIaAPG~dI~St~p-----------------~g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA 590 (639)
T PTZ00262 530 --KYCQLAAPGTNIYSTFP-----------------KNSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESI 590 (639)
T ss_pred --CcceEEeCCCCeeeccC-----------------CCceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 13499999999999987 57899999999999999999999999999999999999999999
Q ss_pred ccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCCCCeee
Q 006598 451 SLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMDPGLVY 492 (639)
Q Consensus 451 ~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~~~lv~ 492 (639)
.++... .....| +|+||+++|++.++-+
T Consensus 591 ~~l~~~-------------~n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 591 VQLPSL-------------KNKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred ccCCCC-------------CCcccc-CcEEcHHHHHHHHHhc
Confidence 865210 111223 4899999999865544
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.2e-45 Score=391.97 Aligned_cols=298 Identities=29% Similarity=0.343 Sum_probs=224.3
Q ss_pred CccccCCCCCCCCCCCCCCCCC-----cccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCC
Q 006598 1 MDTGIWPESESFKDENMGEIPP-----RWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAV 75 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~-----~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 75 (639)
||||||++||+|.+....+... .++..+..+. ..+++.+++.+++|.+.... .....|..
T Consensus 18 iDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 82 (346)
T cd07475 18 IDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGY---GKYYNEKVPFAYNYADNNDD------------ILDEDDGS 82 (346)
T ss_pred EeCCCCCCChhHccCCCcccccchhhhhhhhcccCCC---CcccccCCCeeEcCCCCCCc------------cCCCCCCC
Confidence 7999999999998764432110 1222222222 23478899999999876321 12245788
Q ss_pred CCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecC--CCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 006598 76 GHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWA--PGGCSSADLLAAFDDATFDGVDVISLSLGSSLP 153 (639)
Q Consensus 76 GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~--~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 153 (639)
+|||||||||+|...+.. .+..+.||||+|+|+.+|++.. ........+++|++++++.|++|||||||...
T Consensus 83 ~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~- 156 (346)
T cd07475 83 SHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA- 156 (346)
T ss_pred CcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC-
Confidence 999999999999875322 1345799999999999999973 46778899999999999999999999999985
Q ss_pred CCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc----------------CCCCcEEEEEeeccCCccceEEEeCC
Q 006598 154 LSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI----------------NTAPWVITVAASTIDRAFPTAITMGN 217 (639)
Q Consensus 154 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap~vitVgA~~~~~~~~~~~~~~~ 217 (639)
........+..++.++.++|++||+||||+|....... ...+++|+||++...
T Consensus 157 ~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~----------- 225 (346)
T cd07475 157 GFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK----------- 225 (346)
T ss_pred CCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-----------
Confidence 22244567788888999999999999999985432211 123455555543200
Q ss_pred ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006598 218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV 297 (639)
Q Consensus 218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~ 297 (639)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCce
Q 006598 298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDI 377 (639)
Q Consensus 298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI 377 (639)
......+.++.||+|||+. ++++||||
T Consensus 226 ---------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi 252 (346)
T cd07475 226 ---------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDI 252 (346)
T ss_pred ---------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeE
Confidence 0012235788999999998 89999999
Q ss_pred EcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhc
Q 006598 378 AAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAI----HPTWSPAA----IKSAIVTT 449 (639)
Q Consensus 378 ~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~----vk~~L~~T 449 (639)
+|||.+|+++.. .+.|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++|
T Consensus 253 ~apG~~i~s~~~-----------------~~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~t 315 (346)
T cd07475 253 TAPGGNIYSTVN-----------------DNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNT 315 (346)
T ss_pred EeCCCCeEEecC-----------------CCceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhc
Confidence 999999999876 478899999999999999999999997 78999876 78899999
Q ss_pred CccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006598 450 ASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487 (639)
Q Consensus 450 A~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~ 487 (639)
|.+.. +.......+.+.++|+|+||+.+||+
T Consensus 316 a~~~~-------~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 316 ATPPL-------DSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCccc-------ccCCCCccCCccccCcchhcHHHhhC
Confidence 98421 11113556778899999999999985
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.1e-45 Score=374.00 Aligned_cols=203 Identities=30% Similarity=0.390 Sum_probs=171.0
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS 150 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 150 (639)
+.|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+....++++++|+||++++++|||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999998742 3489999999999999987666778889999999999999999999998
Q ss_pred CCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006598 151 SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN 228 (639)
Q Consensus 151 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (639)
.. +.+.++.+++.++.++|++||+||||+|+...+. +...+++|+|||+..+
T Consensus 110 ~~----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~---------------------- 163 (255)
T cd07479 110 PD----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD---------------------- 163 (255)
T ss_pred CC----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC----------------------
Confidence 63 4445677777888899999999999999765443 3455788999874321
Q ss_pred CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006598 229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD 308 (639)
Q Consensus 229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 308 (639)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCC----CCCCcCCceEcCCCcE
Q 006598 309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSL----SPSVLKPDIAAPGVNI 384 (639)
Q Consensus 309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I 384 (639)
+.++.|||+|++.. ..+++||||+|||.+|
T Consensus 164 ----------------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i 197 (255)
T cd07479 164 ----------------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGV 197 (255)
T ss_pred ----------------------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCe
Confidence 46788999996421 2678899999999999
Q ss_pred EeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCccC
Q 006598 385 LASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHP----TWSPAAIKSAIVTTASLK 453 (639)
Q Consensus 385 ~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~vk~~L~~TA~~~ 453 (639)
+++.. .+.|..++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 198 ~~~~~-----------------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 198 YGSKL-----------------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred ecccc-----------------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 98765 46789999999999999999999999998 799999999999999975
No 7
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.3e-45 Score=376.32 Aligned_cols=228 Identities=25% Similarity=0.198 Sum_probs=178.0
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS 150 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 150 (639)
..|..||||||||||+ ||||+|+|+.+|+.. ..+++++||+|++++|++|||||||.
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccc
Confidence 4578899999999993 789999999998742 37889999999999999999999998
Q ss_pred CCCCCCCccchHHHHHHHhHhC-CcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006598 151 SLPLSTYVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN 228 (639)
Q Consensus 151 ~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (639)
.. ...+.+..+..+++++.++ |++||+||||+|+... ..+...|++|+|||++...........
T Consensus 101 ~~-~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~------------- 166 (275)
T cd05562 101 LN-EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDP------------- 166 (275)
T ss_pred cC-CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccc-------------
Confidence 64 2212345688888888887 9999999999997533 335577999999997644210000000
Q ss_pred CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006598 229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD 308 (639)
Q Consensus 229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 308 (639)
+.
T Consensus 167 ---------------------------------------------------~~--------------------------- 168 (275)
T cd05562 167 ---------------------------------------------------AP--------------------------- 168 (275)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc-EEec
Q 006598 309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN-ILAS 387 (639)
Q Consensus 309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~-I~sa 387 (639)
.......+.||++||+. ++++||||+|||+. +.++
T Consensus 169 ------------------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~ 204 (275)
T cd05562 169 ------------------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVD 204 (275)
T ss_pred ------------------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCC
Confidence 00012345678899988 88999999999753 4444
Q ss_pred cCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCC
Q 006598 388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPH 467 (639)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~ 467 (639)
+. .+.|..++|||||||||||++|||+|++|+|++++||++|++||+++..
T Consensus 205 ~~-----------------~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------ 255 (275)
T cd05562 205 GD-----------------GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------ 255 (275)
T ss_pred Cc-----------------CCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------
Confidence 43 5789999999999999999999999999999999999999999996531
Q ss_pred CCCCCCCCCCCCCCcCCcCC
Q 006598 468 KQADPFDYGGGHVDPNKAMD 487 (639)
Q Consensus 468 ~~~~~~~~G~G~id~~~A~~ 487 (639)
+..+..||||+||+.+|++
T Consensus 256 -~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 256 -PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred -CCCCCCcCcCcccHHHHhh
Confidence 2245589999999999986
No 8
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-44 Score=370.91 Aligned_cols=284 Identities=38% Similarity=0.472 Sum_probs=215.1
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006598 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH 80 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH 80 (639)
||||||++||+|.+.. .++++++.+++|.......................|..+||||
T Consensus 9 iDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 67 (295)
T cd07474 9 IDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTH 67 (295)
T ss_pred EECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHH
Confidence 7999999999997642 1456666777776542211000000000011224568999999
Q ss_pred hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006598 81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD 160 (639)
Q Consensus 81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 160 (639)
|||||+|...+ ...+.||||+|+|+.+|++...+.+...+++++|+|+++++++|||||||... . ...+
T Consensus 68 vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~-~--~~~~ 136 (295)
T cd07474 68 VAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV-N--GPDD 136 (295)
T ss_pred HHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-C--CCCC
Confidence 99999998643 23568999999999999998657788999999999999999999999999874 2 2456
Q ss_pred hHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCceee
Q 006598 161 IISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYP 238 (639)
Q Consensus 161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p 238 (639)
.+..+++++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 137 ~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------------ 186 (295)
T cd07474 137 PDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------------ 186 (295)
T ss_pred HHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------------
Confidence 788889999999999999999999765544 446789999998541100
Q ss_pred eEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccEE
Q 006598 239 IVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYI 318 (639)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~ 318 (639)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecc-cCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006598 319 QVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFF-SSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT 397 (639)
Q Consensus 319 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f-SS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 397 (639)
........| |++|++. ...+||||+|||++|++++...
T Consensus 187 ---------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~------ 225 (295)
T cd07474 187 ---------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS------ 225 (295)
T ss_pred ---------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC------
Confidence 001233344 4455555 8899999999999999998743
Q ss_pred CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCC
Q 006598 398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGG 477 (639)
Q Consensus 398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~ 477 (639)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++....+ ...+++..+|+
T Consensus 226 ---------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~---------~~~~~~~~~G~ 287 (295)
T cd07474 226 ---------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------GVVYPVSRQGA 287 (295)
T ss_pred ---------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC---------CCcCChhccCc
Confidence 368999999999999999999999999999999999999999999764322 22235668999
Q ss_pred CCCCcCCc
Q 006598 478 GHVDPNKA 485 (639)
Q Consensus 478 G~id~~~A 485 (639)
|+||+.+|
T Consensus 288 G~l~~~~A 295 (295)
T cd07474 288 GRVDALRA 295 (295)
T ss_pred ceeccccC
Confidence 99999886
No 9
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.7e-44 Score=372.57 Aligned_cols=264 Identities=25% Similarity=0.287 Sum_probs=187.5
Q ss_pred CccccCCCCCCCCCCCCCCC-CCcccccccCCCCcCCCCCCcceEEEEEcccchhhhc----cCCCC----CCCCcCCCC
Q 006598 1 MDTGIWPESESFKDENMGEI-PPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEF----GKLNS----SDRVEFLSP 71 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~-~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~----~~~~~----~~~~~~~~~ 71 (639)
||||||++||+|++...... ....+|....+.+|. + -+++++|...+.... .+.+. ....+...|
T Consensus 8 iDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~-----d-d~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (291)
T cd07483 8 LDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI-----D-DVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNGP 81 (291)
T ss_pred EeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc-----c-cccCeeccCCcccccccccCccccccccccccccCCC
Confidence 79999999999987522110 001122222222221 0 145666654211100 00000 001223456
Q ss_pred CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006598 72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSS 151 (639)
Q Consensus 72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 151 (639)
.|..||||||||||+|...++ ..+.||||+|+|+.+|++.. +.....++++||+||+++|++|||||||..
T Consensus 82 ~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~ 152 (291)
T cd07483 82 ISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKVINMSFGKS 152 (291)
T ss_pred CCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 678999999999999986432 23689999999999999865 566778999999999999999999999976
Q ss_pred CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc-----------CCCCcEEEEEeeccCCccceEEEeCCceE
Q 006598 152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI-----------NTAPWVITVAASTIDRAFPTAITMGNNQT 220 (639)
Q Consensus 152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-----------~~ap~vitVgA~~~~~~~~~~~~~~~~~~ 220 (639)
. . .....+..++.++.++|+++|+||||+|....... ...+++|+|||+....
T Consensus 153 ~-~--~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~------------- 216 (291)
T cd07483 153 F-S--PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY------------- 216 (291)
T ss_pred C-C--CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-------------
Confidence 3 1 23345777888899999999999999995422111 1234566666532210
Q ss_pred EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006598 221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300 (639)
Q Consensus 221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i 300 (639)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcC
Q 006598 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAP 380 (639)
Q Consensus 301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 380 (639)
....++.||++|+. +|||+||
T Consensus 217 ----------------------------------------------------~~~~~~~~Sn~G~~-------~vdi~AP 237 (291)
T cd07483 217 ----------------------------------------------------ENNLVANFSNYGKK-------NVDVFAP 237 (291)
T ss_pred ----------------------------------------------------CcccccccCCCCCC-------ceEEEeC
Confidence 01246789999974 3599999
Q ss_pred CCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 381 GVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 381 G~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
|..|+++.+ .+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 238 G~~i~s~~~-----------------~~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 238 GERIYSTTP-----------------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCCeEeccC-----------------cCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999876 578999999999999999999999999999999999999999984
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-44 Score=359.83 Aligned_cols=204 Identities=27% Similarity=0.340 Sum_probs=170.6
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC---CCCCHHHHHHHHHHHHhCCCcEEEEc
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP---GGCSSADLLAAFDDATFDGVDVISLS 147 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~---~~~~~~~i~~ai~~a~~~g~dVIn~S 147 (639)
+.|..+|||||||||+|.... . .||||+|+|+.+|++... ..+...++++||+||++.|++|||||
T Consensus 32 ~~~~~~HGT~vAgiia~~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S 100 (239)
T cd05561 32 APAPSAHGTAVASLLAGAGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNIS 100 (239)
T ss_pred CCCCCCCHHHHHHHHhCCCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 456789999999999998531 1 699999999999999853 24678899999999999999999999
Q ss_pred cCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEe
Q 006598 148 LGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAF 226 (639)
Q Consensus 148 lG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~ 226 (639)
||... ...+..++.++.++|++||+||||+|+.. ..++...+++|+|+++..+
T Consensus 101 ~g~~~------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------- 154 (239)
T cd05561 101 LAGPP------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------- 154 (239)
T ss_pred CCCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------
Confidence 99652 34678888999999999999999999753 3455566888999864321
Q ss_pred ecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC
Q 006598 227 YNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT 306 (639)
Q Consensus 227 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~ 306 (639)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEe
Q 006598 307 KDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILA 386 (639)
Q Consensus 307 ~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~s 386 (639)
+.++.||++|+.. ||+|||.+|++
T Consensus 155 ------------------------------------------------~~~~~~s~~g~~~--------di~ApG~~i~~ 178 (239)
T cd05561 155 ------------------------------------------------GRLYREANRGAHV--------DFAAPGVDVWV 178 (239)
T ss_pred ------------------------------------------------CCccccCCCCCcc--------eEEccccceec
Confidence 3567899999977 99999999998
Q ss_pred ccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCC
Q 006598 387 SWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAP 466 (639)
Q Consensus 387 a~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~ 466 (639)
+.+ .+.|..++|||||||||||++|||+|++| |+++|||++|++||+++..
T Consensus 179 ~~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~----------- 229 (239)
T cd05561 179 AAP-----------------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP----------- 229 (239)
T ss_pred ccC-----------------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------
Confidence 765 57899999999999999999999999999 9999999999999997632
Q ss_pred CCCCCCCCCCCC
Q 006598 467 HKQADPFDYGGG 478 (639)
Q Consensus 467 ~~~~~~~~~G~G 478 (639)
+.....||||
T Consensus 230 --~~~d~~~G~G 239 (239)
T cd05561 230 --PGRDPVFGYG 239 (239)
T ss_pred --CCcCCCcCCC
Confidence 2233478887
No 11
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-44 Score=373.38 Aligned_cols=277 Identities=31% Similarity=0.346 Sum_probs=215.4
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006598 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH 80 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH 80 (639)
||||||++||+|.+.-. .+.++.+.++|..+...... ......++.|..|||||
T Consensus 20 iDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~~~~~-----~~~~~~~~~d~~gHGT~ 73 (312)
T cd07489 20 VDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDYDGTN-----PPVPDDDPMDCQGHGTH 73 (312)
T ss_pred EECCCCCCChhhhcCCC---------------------CCceeccccccCCccccccc-----CCCCCCCCCCCCCcHHH
Confidence 79999999999976421 11233334444433111000 01223466788999999
Q ss_pred hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccc
Q 006598 81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDD 160 (639)
Q Consensus 81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 160 (639)
|||||+|...+ ..+.||||+|+|+.+|++...+....+.+++++++|++++++|||||||... . +..+
T Consensus 74 vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~-~--~~~~ 141 (312)
T cd07489 74 VAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS-G--WSED 141 (312)
T ss_pred HHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC-C--CCCC
Confidence 99999998642 3468999999999999998667788889999999999999999999999874 2 4457
Q ss_pred hHHHHHHHhHhCCcEEEEeccCCCCCCC---cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCcee
Q 006598 161 IISIGSFHAVAKGISVVCSAGNSGPYPQ---TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFY 237 (639)
Q Consensus 161 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 237 (639)
.+..++.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 142 ~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------------- 188 (312)
T cd07489 142 PWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------------- 188 (312)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------------
Confidence 7888888999999999999999986432 2234557788887521
Q ss_pred eeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccccE
Q 006598 238 PIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPY 317 (639)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~ 317 (639)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccC
Q 006598 318 IQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQT 397 (639)
Q Consensus 318 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 397 (639)
+.||+|||+. +...||||+|||++|+++++..
T Consensus 189 ----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~------ 220 (312)
T cd07489 189 ----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA------ 220 (312)
T ss_pred ----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC------
Confidence 4689999998 7899999999999999988743
Q ss_pred CCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCC
Q 006598 398 DHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH-PTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYG 476 (639)
Q Consensus 398 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G 476 (639)
.+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||..+...+..-. ...+++..++|
T Consensus 221 ---------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~----~~~~~~~~~~G 287 (312)
T cd07489 221 ---------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA----LPDLAPVAQQG 287 (312)
T ss_pred ---------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc----ccCCCCHhhcC
Confidence 3569999999999999999999999999 999999999999999997643321111 11246778999
Q ss_pred CCCCCcCCcCCCC
Q 006598 477 GGHVDPNKAMDPG 489 (639)
Q Consensus 477 ~G~id~~~A~~~~ 489 (639)
+|+||+.+|++..
T Consensus 288 ~G~vn~~~a~~~~ 300 (312)
T cd07489 288 AGLVNAYKALYAT 300 (312)
T ss_pred cceeeHHHHhcCC
Confidence 9999999999953
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-43 Score=360.45 Aligned_cols=240 Identities=33% Similarity=0.373 Sum_probs=192.1
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006598 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH 80 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH 80 (639)
||||||++||+|..... ..+.++.+.++|.++.. ....|..|||||
T Consensus 7 iDsGi~~~h~~~~~~~~--------------------~~~~~i~~~~~~~~~~~--------------~~~~~~~~HGT~ 52 (261)
T cd07493 7 IDAGFPKVHEAFAFKHL--------------------FKNLRILGEYDFVDNSN--------------NTNYTDDDHGTA 52 (261)
T ss_pred EccCCCccCcchhhhcc--------------------ccCCceeeeecCccCCC--------------CCCCCCCCchhh
Confidence 79999999999954311 13557778888866511 013578899999
Q ss_pred hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC--CCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC--
Q 006598 81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP--GGCSSADLLAAFDDATFDGVDVISLSLGSSLPLST-- 156 (639)
Q Consensus 81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~--~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~-- 156 (639)
|||||+|... +.+.||||+|+|+.+|+.... .......+++|++|+.+.|++|||||||.......
T Consensus 53 vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~ 122 (261)
T cd07493 53 VLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTY 122 (261)
T ss_pred hheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc
Confidence 9999999852 246899999999999987542 23456678999999999999999999998751110
Q ss_pred --------CccchHHHHHHHhHhCCcEEEEeccCCCCCC---CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEE
Q 006598 157 --------YVDDIISIGSFHAVAKGISVVCSAGNSGPYP---QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQA 225 (639)
Q Consensus 157 --------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 225 (639)
.....+.++++++.++|+++|+||||+|... ...+...+++|+|||....
T Consensus 123 ~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------- 183 (261)
T cd07493 123 SYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------- 183 (261)
T ss_pred ccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-------------------
Confidence 0113567788889999999999999999762 3445567899999974321
Q ss_pred eecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCC
Q 006598 226 FYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFP 305 (639)
Q Consensus 226 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~ 305 (639)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEE
Q 006598 306 TKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNIL 385 (639)
Q Consensus 306 ~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 385 (639)
+.++.||++||+. ++++||||+|||.+|+
T Consensus 184 -------------------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~ 212 (261)
T cd07493 184 -------------------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIY 212 (261)
T ss_pred -------------------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeE
Confidence 3567899999998 8999999999999998
Q ss_pred eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
+... .+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 213 ~~~~-----------------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 213 VING-----------------DGNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred EEcC-----------------CCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 7543 578999999999999999999999999999999999999999985
No 13
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2.7e-43 Score=358.21 Aligned_cols=203 Identities=31% Similarity=0.314 Sum_probs=172.1
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG-GCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
..|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+ .+...++++||+||+++|++|||||||
T Consensus 46 ~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 115 (267)
T cd07476 46 DGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGG 115 (267)
T ss_pred CCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 45678999999999998742 2358999999999999997643 344788999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006598 150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG 229 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (639)
... ........+.++++++.++|++||+||||+|......+...|++|+|||+...
T Consensus 116 ~~~-~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------- 171 (267)
T cd07476 116 RLT-QTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD----------------------- 171 (267)
T ss_pred cCC-CCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------
Confidence 764 22234566888889999999999999999998777777778999999975321
Q ss_pred cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006598 230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV 309 (639)
Q Consensus 230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 309 (639)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006598 310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS 389 (639)
Q Consensus 310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 389 (639)
+.++.||+||+.. .||||+|||.+|+++.+
T Consensus 172 ---------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~ 201 (267)
T cd07476 172 ---------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAAL 201 (267)
T ss_pred ---------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecC
Confidence 2456899999865 38899999999999887
Q ss_pred CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCccCC
Q 006598 390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT----WSPAAIKSAIVTTASLKD 454 (639)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----ls~~~vk~~L~~TA~~~~ 454 (639)
++.|..++|||||||||||++|||+|++|. +++++||++|++||+++.
T Consensus 202 -----------------~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~ 253 (267)
T cd07476 202 -----------------GGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCD 253 (267)
T ss_pred -----------------CCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCC
Confidence 578999999999999999999999999887 899999999999999764
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.2e-42 Score=352.90 Aligned_cols=202 Identities=35% Similarity=0.380 Sum_probs=171.4
Q ss_pred CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh----------
Q 006598 69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF---------- 138 (639)
Q Consensus 69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~---------- 138 (639)
..|.|..+|||||||||+|.... +...||||+|+|+.+|++.. ..+...+++++++++++
T Consensus 46 ~~~~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 115 (264)
T cd07481 46 PLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDR-NGGNDADYLRCAQWMLAPTDSAGNPAD 115 (264)
T ss_pred CCCCCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecC-CCCcHHHHHHHHHHHHhcccccccccc
Confidence 35678899999999999987532 22389999999999999987 44788899999999975
Q ss_pred --CCCcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCc---ccCCCCcEEEEEeeccCCccceEE
Q 006598 139 --DGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQT---VINTAPWVITVAASTIDRAFPTAI 213 (639)
Q Consensus 139 --~g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgA~~~~~~~~~~~ 213 (639)
.|++|||||||... .....+..++..+.++|++||+||||+|..... .+...+++|+|||+..+
T Consensus 116 ~~~~~~Iin~S~G~~~----~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------- 184 (264)
T cd07481 116 PDLAPDVINNSWGGPS----GDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------- 184 (264)
T ss_pred cccCCeEEEeCCCcCC----CCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-------
Confidence 78999999999874 234556677788889999999999999865433 34566888998864321
Q ss_pred EeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhc
Q 006598 214 TMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLD 293 (639)
Q Consensus 214 ~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~ 293 (639)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCc
Q 006598 294 SGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVL 373 (639)
Q Consensus 294 ~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 373 (639)
+.++.||++||.. .+++
T Consensus 185 -------------------------------------------------------------~~~~~~S~~g~~~--~~~~ 201 (264)
T cd07481 185 -------------------------------------------------------------DVLADFSSRGPST--YGRI 201 (264)
T ss_pred -------------------------------------------------------------CCCccccCCCCCC--CCCc
Confidence 4677899999998 7999
Q ss_pred CCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCc
Q 006598 374 KPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT--WSPAAIKSAIVTTAS 451 (639)
Q Consensus 374 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--ls~~~vk~~L~~TA~ 451 (639)
||||+|||.+|+++++ ++.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 202 ~~dv~ApG~~i~s~~~-----------------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 202 KPDISAPGVNIRSAVP-----------------GGGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CceEEECCCCeEEecC-----------------CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999999999987 578999999999999999999999999999 999999999999985
No 15
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-42 Score=359.30 Aligned_cols=237 Identities=25% Similarity=0.217 Sum_probs=169.8
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC----CCCHHHHHHHHHHHHhCC---CcE
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG----GCSSADLLAAFDDATFDG---VDV 143 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~dV 143 (639)
+.|..||||||||||++.... .....|+||+++|+.+|++...+ .....++++||+|+++.+ ++|
T Consensus 34 ~~d~~gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~V 105 (291)
T cd04847 34 TADDLGHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRV 105 (291)
T ss_pred cCCCCCChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeE
Confidence 568899999999999976432 12457999999999999998753 456788999999999853 499
Q ss_pred EEEccCCCCCCCCCccchHHHHHHH-hHhCCcEEEEeccCCCCCCCcc------------cCCCCcEEEEEeeccCCccc
Q 006598 144 ISLSLGSSLPLSTYVDDIISIGSFH-AVAKGISVVCSAGNSGPYPQTV------------INTAPWVITVAASTIDRAFP 210 (639)
Q Consensus 144 In~SlG~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~ap~vitVgA~~~~~~~~ 210 (639)
||||||............+..++++ +.++|++||+||||+|...... +..++++|+|||++......
T Consensus 106 iN~SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~ 185 (291)
T cd04847 106 FNLSLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDIT 185 (291)
T ss_pred EEEecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCC
Confidence 9999999852111111245556654 5689999999999999765432 33467999999876543100
Q ss_pred eEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHh
Q 006598 211 TAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAART 290 (639)
Q Consensus 211 ~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~ 290 (639)
..-.. +
T Consensus 186 ~~s~~----------------------------------------------------------------~---------- 191 (291)
T cd04847 186 DRARY----------------------------------------------------------------S---------- 191 (291)
T ss_pred Ccccc----------------------------------------------------------------c----------
Confidence 00000 0
Q ss_pred hhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCC
Q 006598 291 VLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSP 370 (639)
Q Consensus 291 ~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 370 (639)
.......+.||+|||.. +
T Consensus 192 ------------------------------------------------------------~~~~~~~~~fs~~Gp~~--~ 209 (291)
T cd04847 192 ------------------------------------------------------------AVGPAPAGATTSSGPGS--P 209 (291)
T ss_pred ------------------------------------------------------------ccccccCCCccccCCCC--C
Confidence 00001233499999998 9
Q ss_pred CCcCCceEcCCCcEEeccCCCCCCccCC-CCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006598 371 SVLKPDIAAPGVNILASWSPVSNLEQTD-HVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449 (639)
Q Consensus 371 ~~~KPDI~APG~~I~sa~~~~~~~~~~~-~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 449 (639)
+.+||||+|||++|.+............ ...........|..++|||||||||||++|||+|++|++++++||++|++|
T Consensus 210 ~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~s 289 (291)
T cd04847 210 GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHS 289 (291)
T ss_pred CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 9999999999999987654211000000 000000115789999999999999999999999999999999999999999
Q ss_pred Cc
Q 006598 450 AS 451 (639)
Q Consensus 450 A~ 451 (639)
|+
T Consensus 290 A~ 291 (291)
T cd04847 290 AE 291 (291)
T ss_pred cC
Confidence 85
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=346.95 Aligned_cols=220 Identities=36% Similarity=0.496 Sum_probs=182.4
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC----CCcEEE
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD----GVDVIS 145 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~dVIn 145 (639)
...|..||||||||||+|...+. ...+.||||+|+|+.+|++...+.....++++||+|+++. +++|||
T Consensus 39 ~~~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin 111 (264)
T cd07487 39 TPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVN 111 (264)
T ss_pred CCCCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEE
Confidence 45677899999999999986431 2346999999999999999876777889999999999998 999999
Q ss_pred EccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC--cccCCCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006598 146 LSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ--TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVG 223 (639)
Q Consensus 146 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g 223 (639)
||||... ......+.+..+++++.++|++||+||||++.... ..+...+++|+|||+..+..
T Consensus 112 ~S~g~~~-~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------- 175 (264)
T cd07487 112 LSLGAPP-DPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------- 175 (264)
T ss_pred eccCCCC-CCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------
Confidence 9999885 22356678899999999999999999999997765 44456789999997543310
Q ss_pred EEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEec
Q 006598 224 QAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAK 303 (639)
Q Consensus 224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~ 303 (639)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc
Q 006598 304 FPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN 383 (639)
Q Consensus 304 ~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 383 (639)
....++.||++||+. ++++||||+|||++
T Consensus 176 -------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~ 204 (264)
T cd07487 176 -------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGEN 204 (264)
T ss_pred -------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccc
Confidence 002577899999998 89999999999999
Q ss_pred EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 384 I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
|+++.+...... . ...+.|..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 205 i~~~~~~~~~~~--~------~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 205 IVSCRSPGGNPG--A------GVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eEeccccccccC--C------CCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999865431110 0 11578999999999999999999999999999999999999999985
No 17
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3.1e-41 Score=355.44 Aligned_cols=220 Identities=29% Similarity=0.294 Sum_probs=167.5
Q ss_pred CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGG--CSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
.|+.||||||||||||+..+ ...+.||||+|+|+.+|++..... +....+++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999998532 235689999999999999865322 23467999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHH-hHhCCcEEEEeccCCCCCCCcccC---CCCcEEEEEeeccCCccceEEEeCCceEEEeEE
Q 006598 150 SSLPLSTYVDDIISIGSFH-AVAKGISVVCSAGNSGPYPQTVIN---TAPWVITVAASTIDRAFPTAITMGNNQTVVGQA 225 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~ 225 (639)
... .. .....+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||+.........
T Consensus 254 ~~~-~~-~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 254 EAT-HW-PNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred cCC-CC-ccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 874 21 111233444444 447899999999999987766543 35899999986432110000
Q ss_pred eecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCC
Q 006598 226 FYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFP 305 (639)
Q Consensus 226 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~ 305 (639)
|-+.
T Consensus 319 -----------y~~~----------------------------------------------------------------- 322 (412)
T cd04857 319 -----------YSLR----------------------------------------------------------------- 322 (412)
T ss_pred -----------cccc-----------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEE
Q 006598 306 TKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNIL 385 (639)
Q Consensus 306 ~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 385 (639)
....+.++.||||||+. ++.+||||+|||+.|.
T Consensus 323 ---------------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~ 355 (412)
T cd04857 323 ---------------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIA 355 (412)
T ss_pred ---------------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEE
Confidence 01125788999999999 9999999999999998
Q ss_pred eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCcc
Q 006598 386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASL 452 (639)
Q Consensus 386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~ 452 (639)
|+-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||++
T Consensus 356 s~p~~~---------------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 356 SVPNWT---------------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred EcccCC---------------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 752211 46789999999999999999999975 57899999999999999985
No 18
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-41 Score=340.46 Aligned_cols=216 Identities=34% Similarity=0.385 Sum_probs=166.7
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
.+.|..+|||||||||+|+.. +....||||+|+|+.+|++...+ +...+++++|+|+++.+++|||||||
T Consensus 38 ~~~d~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 38 EVFDAGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCCCCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 455788999999999999864 23457999999999999998743 78899999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhHh-CCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006598 150 SSLPLSTYVDDIISIGSFHAVA-KGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN 228 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (639)
... ...+.+..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.......
T Consensus 108 ~~~----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s--------------- 168 (254)
T cd07490 108 GTY----YSEDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS--------------- 168 (254)
T ss_pred cCC----CCCcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc---------------
Confidence 874 225566666666654 699999999999987666677789999999865432100000
Q ss_pred CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006598 229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD 308 (639)
Q Consensus 229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 308 (639)
.
T Consensus 169 -~------------------------------------------------------------------------------ 169 (254)
T cd07490 169 -S------------------------------------------------------------------------------ 169 (254)
T ss_pred -C------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006598 309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW 388 (639)
Q Consensus 309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 388 (639)
.........+.+|.. .....||||+|||.+|+++.
T Consensus 170 --------------------------------------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~ 204 (254)
T cd07490 170 --------------------------------------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSAR 204 (254)
T ss_pred --------------------------------------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccc
Confidence 000111223333433 15568999999999999865
Q ss_pred CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
.... . .+.|..++|||||||+|||++|||+|++|+|++.+||.+|++||+
T Consensus 205 ~~~~------------~-~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 205 QGAN------------G-DGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cCCC------------C-CCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 3211 0 578999999999999999999999999999999999999999985
No 19
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.6e-40 Score=340.92 Aligned_cols=209 Identities=30% Similarity=0.291 Sum_probs=171.5
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
...|..||||||||||+|...+.....|++ .+.|+||+|+|+.+|++........+.++++|++|++.|++|||||||
T Consensus 56 ~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g 133 (273)
T cd07485 56 DVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWG 133 (273)
T ss_pred CCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCC
Confidence 345678999999999999865433222222 356799999999999998766788899999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhHhC-------CcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEE
Q 006598 150 SSLPLSTYVDDIISIGSFHAVAK-------GISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVV 222 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~ 222 (639)
.... ......+..+++++.++ |++||+||||+|......+...+++|+|++++.+
T Consensus 134 ~~~~--~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~---------------- 195 (273)
T cd07485 134 GTGG--GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN---------------- 195 (273)
T ss_pred CCCc--cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC----------------
Confidence 8741 23456677888888887 9999999999998766666777899999974321
Q ss_pred eEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEe
Q 006598 223 GQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFA 302 (639)
Q Consensus 223 g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~ 302 (639)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCC
Q 006598 303 KFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGV 382 (639)
Q Consensus 303 ~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~ 382 (639)
+.++.||++|+.. ||+|||.
T Consensus 196 ----------------------------------------------------~~~~~~S~~g~~~--------~i~apG~ 215 (273)
T cd07485 196 ----------------------------------------------------DNKASFSNYGRWV--------DIAAPGV 215 (273)
T ss_pred ----------------------------------------------------CCcCccccCCCce--------EEEeCCC
Confidence 3566899999987 9999999
Q ss_pred -cEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 006598 383 -NILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT-WSPAAIKSAIVTT 449 (639)
Q Consensus 383 -~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-ls~~~vk~~L~~T 449 (639)
.|+++++..... . .+.|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 216 ~~i~~~~~~~~~~----------~-~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 216 GTILSTVPKLDGD----------G-GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CccccccccccCC----------C-CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 898887643110 0 468999999999999999999999999999 9999999999986
No 20
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=343.49 Aligned_cols=209 Identities=26% Similarity=0.321 Sum_probs=167.3
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH----------hC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT----------FD 139 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~----------~~ 139 (639)
...|..+|||||||||+|...+ ...+.||||+|+|+.+|++...+. ...++++|++|++ ++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~~~-~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKCGG-TLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCCCC-cHHHHHHHHHHHhccCcCCCcccCC
Confidence 4556889999999999998642 234589999999999999987444 8889999999998 46
Q ss_pred CCcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCc
Q 006598 140 GVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNN 218 (639)
Q Consensus 140 g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~ 218 (639)
+++|||||||... .....+..++.++.++|++||+||||+|... ...+...+++|+|||+..+
T Consensus 137 ~~~Iin~S~G~~~----~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 200 (285)
T cd07496 137 PAKVINLSLGGDG----ACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------ 200 (285)
T ss_pred CCeEEEeCCCCCC----CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence 7899999999874 2256788889999999999999999999765 4555667899999974322
Q ss_pred eEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceE
Q 006598 219 QTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVG 298 (639)
Q Consensus 219 ~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g 298 (639)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceE
Q 006598 299 LIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIA 378 (639)
Q Consensus 299 ~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~ 378 (639)
+.++.||++|+.. ||+
T Consensus 201 --------------------------------------------------------~~~~~~S~~g~~v--------di~ 216 (285)
T cd07496 201 --------------------------------------------------------GQRASYSNYGPAV--------DVS 216 (285)
T ss_pred --------------------------------------------------------CCcccccCCCCCC--------CEE
Confidence 3667899999987 999
Q ss_pred cCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006598 379 APGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449 (639)
Q Consensus 379 APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 449 (639)
|||++|.++............. .... ...|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 217 apG~~i~~~~~~~~~~~~~~~~-~~~~-~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 217 APGGDCASDVNGDGYPDSNTGT-TSPG-GSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred eCCCCccccCCCCccccccccc-cCCC-CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999887643221000000 0001 4678999999999999999999999999999999999999976
No 21
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-40 Score=334.98 Aligned_cols=207 Identities=29% Similarity=0.298 Sum_probs=170.5
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
.+.|..+|||||||||+|+..+ ...+.||||+|+|+.+|++...+.+...++.++++++++.+++|||||||
T Consensus 35 ~~~~~~~HGT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g 106 (242)
T cd07498 35 PTSDIDGHGTACAGVAAAVGNN--------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWG 106 (242)
T ss_pred CCCCCCCCHHHHHHHHHhccCC--------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccC
Confidence 3467889999999999998532 23468999999999999998756678899999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhHh-CCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006598 150 SSLPLSTYVDDIISIGSFHAVA-KGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN 228 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (639)
... ........+..++.++.+ +|+++|+||||+|......+...+++|+|||++..
T Consensus 107 ~~~-~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------- 163 (242)
T cd07498 107 GSD-STESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------- 163 (242)
T ss_pred CCC-CCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------
Confidence 875 222345667778888888 99999999999998766667778999999975422
Q ss_pred CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006598 229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD 308 (639)
Q Consensus 229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 308 (639)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006598 309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW 388 (639)
Q Consensus 309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 388 (639)
+.++.||++|+.. |++|||.++.+..
T Consensus 164 ----------------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~ 189 (242)
T cd07498 164 ----------------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTG 189 (242)
T ss_pred ----------------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCC
Confidence 3567899999988 9999999998875
Q ss_pred CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006598 389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449 (639)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 449 (639)
........ . . .+.|..++|||||||+|||++|||+|++|+|+++|||++|+.|
T Consensus 190 ~~~~~~~~--~-----~-~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 190 TGRGSAGD--Y-----P-GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cccccccc--C-----C-CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 43211000 0 1 5778999999999999999999999999999999999999976
No 22
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=8.8e-40 Score=333.21 Aligned_cols=196 Identities=34% Similarity=0.395 Sum_probs=171.8
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS 150 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 150 (639)
+.|..||||||||||++.... ...+.|+||+|+|+.+|++...+.+...+++++|+++++.|++|||||||.
T Consensus 64 ~~d~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~ 135 (260)
T cd07484 64 AMDDNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGG 135 (260)
T ss_pred CCCCCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 567889999999999987532 234689999999999999987677888999999999999999999999998
Q ss_pred CCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCc
Q 006598 151 SLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGK 230 (639)
Q Consensus 151 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (639)
.. ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 136 ~~-----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------ 186 (260)
T cd07484 136 GL-----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------------ 186 (260)
T ss_pred CC-----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------------
Confidence 73 4456778888889999999999999998877888888999999974322
Q ss_pred CCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCC
Q 006598 231 EDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVH 310 (639)
Q Consensus 231 ~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 310 (639)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCC
Q 006598 311 FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSP 390 (639)
Q Consensus 311 ~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 390 (639)
+..+.||++|+.. |++|||..|+++.+
T Consensus 187 --------------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~- 213 (260)
T cd07484 187 --------------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTP- 213 (260)
T ss_pred --------------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecC-
Confidence 3566889999877 99999999998876
Q ss_pred CCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccC
Q 006598 391 VSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLK 453 (639)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~ 453 (639)
.+.|..++|||||||+|||++|||+|++| |++++||++|++||+++
T Consensus 214 ----------------~~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 214 ----------------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ----------------CCCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 46899999999999999999999999999 99999999999999864
No 23
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-39 Score=332.30 Aligned_cols=198 Identities=32% Similarity=0.372 Sum_probs=167.5
Q ss_pred CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006598 69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSL 148 (639)
Q Consensus 69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~Sl 148 (639)
.++.|..||||||||||+|...+ ...+.||||+|+|+.+|++...+.+...+++++|+++++.+++|||+||
T Consensus 57 ~~~~d~~~HGT~va~ii~~~~~~--------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~ 128 (259)
T cd07473 57 NDPMDDNGHGTHVAGIIGAVGNN--------GIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSW 128 (259)
T ss_pred CCCCCCCCcHHHHHHHHHCcCCC--------CCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 45678899999999999998643 2345899999999999999876678899999999999999999999999
Q ss_pred CCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC---CcccC--CCCcEEEEEeeccCCccceEEEeCCceEEEe
Q 006598 149 GSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP---QTVIN--TAPWVITVAASTIDRAFPTAITMGNNQTVVG 223 (639)
Q Consensus 149 G~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g 223 (639)
|... ....+..++.++.++|++||+||||+|... ..++. ..+++|+||+...+
T Consensus 129 G~~~-----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------- 186 (259)
T cd07473 129 GGGG-----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------- 186 (259)
T ss_pred CCCC-----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------
Confidence 9883 356788888999999999999999999652 22332 34788888864321
Q ss_pred EEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEec
Q 006598 224 QAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAK 303 (639)
Q Consensus 224 ~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~ 303 (639)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCc
Q 006598 304 FPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVN 383 (639)
Q Consensus 304 ~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 383 (639)
+.++.||++||. +||+.|||.+
T Consensus 187 ---------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~ 208 (259)
T cd07473 187 ---------------------------------------------------DALASFSNYGKK-------TVDLAAPGVD 208 (259)
T ss_pred ---------------------------------------------------CCcCcccCCCCC-------CcEEEeccCC
Confidence 355678999985 3599999999
Q ss_pred EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 384 I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
+++..+ .+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 209 ~~~~~~-----------------~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 209 ILSTSP-----------------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eEeccC-----------------CCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 999665 578999999999999999999999999999999999999999985
No 24
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.2e-39 Score=331.08 Aligned_cols=191 Identities=34% Similarity=0.459 Sum_probs=165.7
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC-----CCcEEE
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD-----GVDVIS 145 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~dVIn 145 (639)
..|..+|||||||||++.. .||||+|+|+.+|++...+....+.++++++++++. +++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 4578899999999999863 699999999999999886678889999999999987 489999
Q ss_pred EccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCC-CcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeE
Q 006598 146 LSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYP-QTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQ 224 (639)
Q Consensus 146 ~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~ 224 (639)
||||... ...+..+++++.++|+++|+||||+|... ...+...+++|+||++..+
T Consensus 125 ~S~g~~~------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------ 180 (255)
T cd04077 125 MSLGGGA------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------ 180 (255)
T ss_pred eCCCCCC------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC------------------
Confidence 9999862 45677888899999999999999999765 3445567899999974322
Q ss_pred EeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecC
Q 006598 225 AFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKF 304 (639)
Q Consensus 225 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~ 304 (639)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcE
Q 006598 305 PTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNI 384 (639)
Q Consensus 305 ~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I 384 (639)
+.++.||++||.. ||+|||.+|
T Consensus 181 --------------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i 202 (255)
T cd04077 181 --------------------------------------------------DARASFSNYGSCV--------DIFAPGVDI 202 (255)
T ss_pred --------------------------------------------------CCccCcccCCCCC--------cEEeCCCCe
Confidence 3467899999988 999999999
Q ss_pred EeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCcc
Q 006598 385 LASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASL 452 (639)
Q Consensus 385 ~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~ 452 (639)
.++.... .+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 203 ~~~~~~~---------------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 203 LSAWIGS---------------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred EecccCC---------------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9887642 4789999999999999999999999999999999999999999973
No 25
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.9e-39 Score=324.48 Aligned_cols=193 Identities=34% Similarity=0.440 Sum_probs=166.9
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
.+.|..+|||||||||++.... ..+.|+||+|+|+.+|++...+.....+++++++++++.|++|||||||
T Consensus 35 ~~~~~~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 35 DYQDGNGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCCCCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 4557889999999999998532 2468999999999999998766777889999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcc--cCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEee
Q 006598 150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTV--INTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFY 227 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (639)
... ....+..++.++.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 106 ~~~-----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------- 159 (229)
T cd07477 106 GPS-----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN--------------------- 159 (229)
T ss_pred cCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC---------------------
Confidence 873 345567788889999999999999999776554 6677899999975432
Q ss_pred cCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCC
Q 006598 228 NGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTK 307 (639)
Q Consensus 228 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 307 (639)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEec
Q 006598 308 DVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILAS 387 (639)
Q Consensus 308 ~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa 387 (639)
+.++.||++|+.. |+.|||..|+++
T Consensus 160 -----------------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~ 184 (229)
T cd07477 160 -----------------------------------------------NNRASFSSTGPEV--------ELAAPGVDILST 184 (229)
T ss_pred -----------------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence 3556889999876 999999999998
Q ss_pred cCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006598 388 WSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449 (639)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 449 (639)
++ .+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 185 ~~-----------------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YP-----------------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cC-----------------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 87 4778999999999999999999999999999999999999976
No 26
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.6e-40 Score=342.69 Aligned_cols=273 Identities=36% Similarity=0.448 Sum_probs=205.7
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006598 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH 80 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH 80 (639)
||||||++||+|...++ ...++.+.+.|.+.. .......|..+||||
T Consensus 5 iDtGid~~h~~~~~~~~---------------------~~~~~~~~~~~~~~~------------~~~~~~~~~~~HGT~ 51 (282)
T PF00082_consen 5 IDTGIDPNHPDFSSGNF---------------------IWSKVPGGYNFVDGN------------PNPSPSDDDNGHGTH 51 (282)
T ss_dssp EESBBTTTSTTTTCTTE---------------------EEEEEEEEEETTTTB------------STTTSSSTSSSHHHH
T ss_pred EcCCcCCCChhHccCCc---------------------ccccccceeeccCCC------------CCcCccccCCCccch
Confidence 79999999999972211 123445566776552 112345678899999
Q ss_pred hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH-hCCCcEEEEccCCCCC-CCCCc
Q 006598 81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT-FDGVDVISLSLGSSLP-LSTYV 158 (639)
Q Consensus 81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~~-~~~~~ 158 (639)
|||||+|.. . . ......|+||+|+|+.+|++...+ .....++++|++++ +.+++|||||||.... .....
T Consensus 52 va~ii~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 52 VAGIIAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhccccc-c-c-----cccccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccccccccc
Confidence 999999996 2 1 123458999999999999987634 78888999999999 8999999999998320 11123
Q ss_pred cchHHHHHHHhHhCCcEEEEeccCCCCCCCc---ccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCCc
Q 006598 159 DDIISIGSFHAVAKGISVVCSAGNSGPYPQT---VINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLNK 235 (639)
Q Consensus 159 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 235 (639)
.+.+..+++.+.++|+++|+||||+|..... .+...+++|+||++...
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~----------------------------- 174 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN----------------------------- 174 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-----------------------------
T ss_pred ccccccccccccccCcceeeccccccccccccccccccccccccccccccc-----------------------------
Confidence 3456667778889999999999999876543 34445788999864421
Q ss_pred eeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCccccc
Q 006598 236 FYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGV 315 (639)
Q Consensus 236 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~i 315 (639)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCCc
Q 006598 316 PYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNLE 395 (639)
Q Consensus 316 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 395 (639)
+.++.||++|+.. .++++||||+|||.+|+++++...
T Consensus 175 ---------------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~--- 211 (282)
T PF00082_consen 175 ---------------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD--- 211 (282)
T ss_dssp ---------------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE---
T ss_pred ---------------------------------------ccccccccccccc-cccccccccccccccccccccccc---
Confidence 2557899997543 278999999999999998887421
Q ss_pred cCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCC
Q 006598 396 QTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDY 475 (639)
Q Consensus 396 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~ 475 (639)
...|..++|||||||+|||++|||+|++|+|++.+||.+|++||.+++.. ........|
T Consensus 212 -----------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~----------~~~~~~~~~ 270 (282)
T PF00082_consen 212 -----------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST----------NGEGYDNSY 270 (282)
T ss_dssp -----------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET----------TSSSSHHHH
T ss_pred -----------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC----------CCCCCCCCc
Confidence 14688999999999999999999999999999999999999999976411 123445578
Q ss_pred CCCCCCcCCcCC
Q 006598 476 GGGHVDPNKAMD 487 (639)
Q Consensus 476 G~G~id~~~A~~ 487 (639)
|+|+||+.+|++
T Consensus 271 G~G~in~~~a~~ 282 (282)
T PF00082_consen 271 GWGLINAEKALN 282 (282)
T ss_dssp TTSBE-HHHHHH
T ss_pred cCChhCHHHHhC
Confidence 999999999863
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=5.8e-39 Score=333.13 Aligned_cols=266 Identities=31% Similarity=0.332 Sum_probs=192.6
Q ss_pred CccccCCCCCCCCCCCCCCCCCcccccccCCCCcCCCCCCcceEEEEEcccchhhhccCCCCCCCCcCCCCCCCCCCchh
Q 006598 1 MDTGIWPESESFKDENMGEIPPRWNGICQEGEGFNRSNCNRKIIGARWYVKGYEAEFGKLNSSDRVEFLSPRDAVGHGTH 80 (639)
Q Consensus 1 IDtGId~~Hp~F~~~~~~~~~~~~~g~~~~~~~f~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~GHGTH 80 (639)
||||||++||+|.+... .+..| .++++.....+.+. +.|..+||||
T Consensus 14 iDtGi~~~hp~l~~~~~------------~~~~~----~~~~~~~~~~~~~~------------------~~d~~~HGT~ 59 (293)
T cd04842 14 ADTGLDTNHCFFYDPNF------------NKTNL----FHRKIVRYDSLSDT------------------KDDVDGHGTH 59 (293)
T ss_pred EecCCCCCCCcccCCCc------------CcCcc----CcccEEEeeccCCC------------------CCCCCCCcch
Confidence 79999999999977532 01111 34555544444321 2278999999
Q ss_pred hHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCcc
Q 006598 81 TSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG-GCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVD 159 (639)
Q Consensus 81 VAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~ 159 (639)
|||||+|...+... ...+.||||+|+|+.+|++...+ .....++..+++++.+.+++|||||||... .. ..
T Consensus 60 vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~-~~--~~ 131 (293)
T cd04842 60 VAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPV-NN--GY 131 (293)
T ss_pred hheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCC-cc--cc
Confidence 99999998643211 11469999999999999998643 356677889999999999999999999884 11 12
Q ss_pred chHHHHHHHhH-h-CCcEEEEeccCCCCCCC---cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecCcCCCC
Q 006598 160 DIISIGSFHAV-A-KGISVVCSAGNSGPYPQ---TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNGKEDLN 234 (639)
Q Consensus 160 ~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 234 (639)
.....++.++. + +|++||+||||+|.... ..+...+++|+|||++.......
T Consensus 132 ~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~----------------------- 188 (293)
T cd04842 132 TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG----------------------- 188 (293)
T ss_pred chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-----------------------
Confidence 33444554443 3 79999999999997654 45567799999998765421000
Q ss_pred ceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCCcccc
Q 006598 235 KFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFG 314 (639)
Q Consensus 235 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 314 (639)
..|..
T Consensus 189 ---------------------~~~~~------------------------------------------------------ 193 (293)
T cd04842 189 ---------------------EGGLG------------------------------------------------------ 193 (293)
T ss_pred ---------------------ccccc------------------------------------------------------
Confidence 00000
Q ss_pred ccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccCCCCCC
Q 006598 315 VPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWSPVSNL 394 (639)
Q Consensus 315 ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 394 (639)
.....+.++.||++||+. ++++||||+|||++|+++......
T Consensus 194 -----------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~- 235 (293)
T cd04842 194 -----------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGG- 235 (293)
T ss_pred -----------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCC-
Confidence 001235789999999998 899999999999999998754200
Q ss_pred ccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhcCc
Q 006598 395 EQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIH-----P---TWSPAAIKSAIVTTAS 451 (639)
Q Consensus 395 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~ls~~~vk~~L~~TA~ 451 (639)
..... ...|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 236 -~~~~~------~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 236 -IGDTS------DSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred -CCCCC------hhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 00001 5789999999999999999999999985 4 6677899999999985
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-39 Score=328.05 Aligned_cols=205 Identities=20% Similarity=0.088 Sum_probs=149.1
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHh----CCCcEEEE
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATF----DGVDVISL 146 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~----~g~dVIn~ 146 (639)
+.|+.+|||||||||+|..+ ..++.||||+|+|+.+|++. .++++++|++|++ .++.+|||
T Consensus 47 ~~d~~gHGT~VAGiIaa~~n---------~~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~ 111 (277)
T cd04843 47 DQADSDHGTAVLGIIVAKDN---------GIGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEM 111 (277)
T ss_pred CCCCCCCcchhheeeeeecC---------CCceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEc
Confidence 45678999999999998731 12358999999999999985 3456677777776 35678999
Q ss_pred ccCCCCCCCC----CccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc-------------CCCCcEEEEEeeccCCcc
Q 006598 147 SLGSSLPLST----YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI-------------NTAPWVITVAASTIDRAF 209 (639)
Q Consensus 147 SlG~~~~~~~----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~ap~vitVgA~~~~~~~ 209 (639)
|||....... .....+..++.++.++|+++|+||||++....... ...+++|+|||++.+.
T Consensus 112 s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~-- 189 (277)
T cd04843 112 QTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT-- 189 (277)
T ss_pred cccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC--
Confidence 9998741110 12334566888888999999999999986422111 0124577777643210
Q ss_pred ceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHH
Q 006598 210 PTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAAR 289 (639)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~ 289 (639)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCC
Q 006598 290 TVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLS 369 (639)
Q Consensus 290 ~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 369 (639)
...++.||++|+..
T Consensus 190 ----------------------------------------------------------------~~~~~~fSn~G~~v-- 203 (277)
T cd04843 190 ----------------------------------------------------------------GHTRLAFSNYGSRV-- 203 (277)
T ss_pred ----------------------------------------------------------------CCccccccCCCCcc--
Confidence 01378999999987
Q ss_pred CCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHH
Q 006598 370 PSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----I-HPTWSPAAIKS 444 (639)
Q Consensus 370 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~ls~~~vk~ 444 (639)
||.|||++|+++.+........ +. .+.|..++|||||||||||++|||++ + +|+|+++|||+
T Consensus 204 ------di~APG~~i~s~~~~~~~~~~~------~~-~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~ 270 (277)
T cd04843 204 ------DVYGWGENVTTTGYGDLQDLGG------EN-QDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRE 270 (277)
T ss_pred ------ceEcCCCCeEecCCCCcccccC------CC-CcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 9999999999998753211000 00 23457899999999999999999975 4 49999999999
Q ss_pred HHHhcCc
Q 006598 445 AIVTTAS 451 (639)
Q Consensus 445 ~L~~TA~ 451 (639)
+|+.|+.
T Consensus 271 ~L~~t~~ 277 (277)
T cd04843 271 LLTATGT 277 (277)
T ss_pred HHHhcCC
Confidence 9999974
No 29
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=8e-39 Score=332.21 Aligned_cols=107 Identities=33% Similarity=0.338 Sum_probs=86.8
Q ss_pred CCCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006598 69 LSPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSL 148 (639)
Q Consensus 69 ~~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~Sl 148 (639)
.+..|..||||||||||+|+.. ..||||+|+|+.+|+++..+.....+++++|++|++++++||||||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~ 114 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSL 114 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 4556789999999999998742 2499999999999999875556889999999999999999999999
Q ss_pred CCCCCCCC------CccchHHHHHHHhHhCCcEEEEeccCCCCCC
Q 006598 149 GSSLPLST------YVDDIISIGSFHAVAKGISVVCSAGNSGPYP 187 (639)
Q Consensus 149 G~~~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 187 (639)
|....... ...+.+..+++++.++|++||+||||+|...
T Consensus 115 G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 115 GGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred ccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 98641110 1123466777788899999999999999643
No 30
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-38 Score=330.54 Aligned_cols=227 Identities=30% Similarity=0.331 Sum_probs=159.7
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCC
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGS 150 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 150 (639)
+.|..||||||||||+|+..+ +...||||+|+|+.+|++..........+++||+||++.|++|||||||.
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 112 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA 112 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 467889999999999998642 23479999999999999987677778889999999999999999999998
Q ss_pred CCCC--------CCCccchHHHHHHHh---------------HhCCcEEEEeccCCCCCCCcccC-----CCCcEEEEEe
Q 006598 151 SLPL--------STYVDDIISIGSFHA---------------VAKGISVVCSAGNSGPYPQTVIN-----TAPWVITVAA 202 (639)
Q Consensus 151 ~~~~--------~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~ap~vitVgA 202 (639)
..++ .......++...+.+ .++|++||+||||+|........ ..++++.|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~ 192 (297)
T cd07480 113 DFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192 (297)
T ss_pred CCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence 6411 001122233333333 68999999999999864332211 1123333332
Q ss_pred eccCCccceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcc
Q 006598 203 STIDRAFPTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQR 282 (639)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~ 282 (639)
....
T Consensus 193 V~~~---------------------------------------------------------------------------- 196 (297)
T cd07480 193 VGAL---------------------------------------------------------------------------- 196 (297)
T ss_pred ECCC----------------------------------------------------------------------------
Confidence 2111
Q ss_pred hHHHHHHhhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccC
Q 006598 283 SAATAARTVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSS 362 (639)
Q Consensus 283 ~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 362 (639)
+....|++
T Consensus 197 ------------------------------------------------------------------------~~~~~~~~ 204 (297)
T cd07480 197 ------------------------------------------------------------------------GRTGNFSA 204 (297)
T ss_pred ------------------------------------------------------------------------CCCCCccc
Confidence 11122222
Q ss_pred CCCCCCCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHH
Q 006598 363 RGPSSLSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAI 442 (639)
Q Consensus 363 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~v 442 (639)
+.+ ....||||+|||.+|+++.+ ++.|..++|||||||+|||++|||+|++|.+++.++
T Consensus 205 ~~~----~~~~~~dv~ApG~~i~s~~~-----------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~ 263 (297)
T cd07480 205 VAN----FSNGEVDIAAPGVDIVSAAP-----------------GGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRAL 263 (297)
T ss_pred cCC----CCCCceEEEeCCCCeEeecC-----------------CCcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHH
Confidence 222 22357899999999999877 578999999999999999999999999999998888
Q ss_pred HHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcC
Q 006598 443 KSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPN 483 (639)
Q Consensus 443 k~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~ 483 (639)
+.+|+...+..... ..........+|+|++++.
T Consensus 264 ~~~l~~~l~~~~~~--------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 264 AALLQARLTAARTT--------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHHhhcccC--------CCCCCCChhhcCCceeecC
Confidence 87777432210000 0223345567999999875
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-39 Score=323.07 Aligned_cols=116 Identities=23% Similarity=0.262 Sum_probs=94.7
Q ss_pred CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC------CCCHHHHHHHHHHHHhCCCcEEE
Q 006598 72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG------GCSSADLLAAFDDATFDGVDVIS 145 (639)
Q Consensus 72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~dVIn 145 (639)
.|..||||||||||+ |+||+|+|+.+|++...+ .+....+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 468899999999995 679999999999998644 45678899999999999999999
Q ss_pred EccCCCCCCC-CCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cc--cCCCCcEEEEEeecc
Q 006598 146 LSLGSSLPLS-TYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TV--INTAPWVITVAASTI 205 (639)
Q Consensus 146 ~SlG~~~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~ap~vitVgA~~~ 205 (639)
||||...... ......+..++.+|.++|++||+||||+|.... ++ +...+++|+|||++.
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 9999874110 112567888999999999999999999997654 33 345689999998653
No 32
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.6e-38 Score=324.68 Aligned_cols=112 Identities=31% Similarity=0.273 Sum_probs=91.2
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
...|+.||||||||++ .||||+|+|+.+|++.. ..+++++||+||++++++|||||||
T Consensus 56 ~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~dVIn~SlG 113 (298)
T cd07494 56 PACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSPDIISNSWG 113 (298)
T ss_pred CCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCCCEEEeecc
Confidence 3567889999999875 58999999999999864 4567899999999999999999999
Q ss_pred CCCCCCC--------CccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccC
Q 006598 150 SSLPLST--------YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTID 206 (639)
Q Consensus 150 ~~~~~~~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~ 206 (639)
....... .....+..++++|.++|++||+||||++. .++...|++|+|||+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~ 175 (298)
T cd07494 114 YDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVD 175 (298)
T ss_pred cCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEecc
Confidence 8641110 11245778888899999999999999984 457788999999987543
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-38 Score=312.09 Aligned_cols=184 Identities=27% Similarity=0.253 Sum_probs=152.8
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccC
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLG 149 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG 149 (639)
.+.|..||||||||||++. +|+++|+.+|++...+.+..+++++||+|++++|++|||||||
T Consensus 39 ~~~d~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 39 EGGDKDGHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCCCCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 4567889999999999754 6999999999998767788999999999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCCCcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006598 150 SSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG 229 (639)
Q Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (639)
... . .....+..+++++.++|+++|+||||++.... .+...+++|+|++.....
T Consensus 101 ~~~-~--~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------- 154 (222)
T cd07492 101 GPG-D--RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------- 154 (222)
T ss_pred CCC-C--CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------
Confidence 874 1 22356778888898999999999999986433 255668899998643210
Q ss_pred cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006598 230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV 309 (639)
Q Consensus 230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 309 (639)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEeccC
Q 006598 310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASWS 389 (639)
Q Consensus 310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 389 (639)
.. +.+++ ++++.|||.+|+++.+
T Consensus 155 ----------------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~ 177 (222)
T cd07492 155 ----------------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAP 177 (222)
T ss_pred ----------------------------------------------Cc---ccccC--------CceEEeCCCCeEeecC
Confidence 01 11233 3499999999999887
Q ss_pred CCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 390 PVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
.+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 178 -----------------~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 178 -----------------HGRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred -----------------CCCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999985
No 34
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=318.71 Aligned_cols=190 Identities=31% Similarity=0.417 Sum_probs=166.1
Q ss_pred CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC---------CCc
Q 006598 72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD---------GVD 142 (639)
Q Consensus 72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~d 142 (639)
.|++||||||||+|+++. .|||-+++|+++||+.++|.+..+++++++|++++. +..
T Consensus 254 ~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~s 319 (501)
T KOG1153|consen 254 EDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKS 319 (501)
T ss_pred cccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCe
Confidence 578999999999999885 699999999999999999999999999999999985 467
Q ss_pred EEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCC-cccCCCCcEEEEEeeccCCccceEEEeCCceEE
Q 006598 143 VISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQ-TVINTAPWVITVAASTIDRAFPTAITMGNNQTV 221 (639)
Q Consensus 143 VIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~ 221 (639)
|.|||+|+.. +-.+..|+++|.+.|+++++||||+-.+.+ +.+..++.+|+|||++..
T Consensus 320 v~NlSlGg~~------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------- 378 (501)
T KOG1153|consen 320 VANLSLGGFR------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------- 378 (501)
T ss_pred EEEEecCCcc------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------
Confidence 9999999863 456889999999999999999999987754 445678899999986432
Q ss_pred EeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEE
Q 006598 222 VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIF 301 (639)
Q Consensus 222 ~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~ 301 (639)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCC
Q 006598 302 AKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPG 381 (639)
Q Consensus 302 ~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 381 (639)
+.++.||+||+++ ||-|||
T Consensus 379 -----------------------------------------------------D~iA~FSN~G~CV--------diFAPG 397 (501)
T KOG1153|consen 379 -----------------------------------------------------DTIAFFSNWGKCV--------DIFAPG 397 (501)
T ss_pred -----------------------------------------------------cchhhhcCcccee--------eeecCc
Confidence 5889999999999 999999
Q ss_pred CcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCC---------CCHHHHHHHHHhcCcc
Q 006598 382 VNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPT---------WSPAAIKSAIVTTASL 452 (639)
Q Consensus 382 ~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------ls~~~vk~~L~~TA~~ 452 (639)
.+|+|+|-+. ...-.+.||||||+|||||++|..+..+|. .++.++|..++.-..+
T Consensus 398 v~IlSs~iGs---------------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 398 VNILSSWIGS---------------NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred hhhhhhhhcC---------------ccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 9999999864 467789999999999999999999998873 3788888888776553
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.7e-36 Score=305.57 Aligned_cols=205 Identities=29% Similarity=0.321 Sum_probs=163.7
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHhCCCcEEEEcc
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPG-GCSSADLLAAFDDATFDGVDVISLSL 148 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~dVIn~Sl 148 (639)
...|..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++..+ ......+.++++++++.+++||||||
T Consensus 41 ~~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 111 (267)
T cd04848 41 SNGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSW 111 (267)
T ss_pred CCCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccC
Confidence 3456789999999999998642 3568999999999999998754 67788899999999999999999999
Q ss_pred CCCCCCCC----------CccchHHHHHHHhHhCCcEEEEeccCCCCCCCccc---------CCCCcEEEEEeeccCCcc
Q 006598 149 GSSLPLST----------YVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVI---------NTAPWVITVAASTIDRAF 209 (639)
Q Consensus 149 G~~~~~~~----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~ap~vitVgA~~~~~~~ 209 (639)
|....... .....+...+..+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-- 189 (267)
T cd04848 112 GGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-- 189 (267)
T ss_pred CCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--
Confidence 98852110 14456777788888999999999999986543322 2357788888765331
Q ss_pred ceEEEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHH
Q 006598 210 PTAITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAAR 289 (639)
Q Consensus 210 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~ 289 (639)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCceEEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeec--ccCCCCCC
Q 006598 290 TVLDSGGVGLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAF--FSSRGPSS 367 (639)
Q Consensus 290 ~~~~~Ga~g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~ 367 (639)
.... ||++|+..
T Consensus 190 ------------------------------------------------------------------~~~~~~~s~~~~~~ 203 (267)
T cd04848 190 ------------------------------------------------------------------TIASYSYSNRCGVA 203 (267)
T ss_pred ------------------------------------------------------------------Ccccccccccchhh
Confidence 2222 47777644
Q ss_pred CCCCCcCCceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 006598 368 LSPSVLKPDIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIV 447 (639)
Q Consensus 368 ~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~ 447 (639)
-.++++|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|+|++++||++|+
T Consensus 204 -----~~~~~~apG~~i~~~~~~~---------------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~ 263 (267)
T cd04848 204 -----ANWCLAAPGENIYSTDPDG---------------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263 (267)
T ss_pred -----hhheeecCcCceeecccCC---------------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 2347999999999987741 36788999999999999999999999999999999999999
Q ss_pred hcCc
Q 006598 448 TTAS 451 (639)
Q Consensus 448 ~TA~ 451 (639)
+||+
T Consensus 264 ~tA~ 267 (267)
T cd04848 264 TTAT 267 (267)
T ss_pred hhcC
Confidence 9985
No 36
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.3e-36 Score=314.18 Aligned_cols=198 Identities=22% Similarity=0.171 Sum_probs=148.9
Q ss_pred CCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 006598 73 DAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSL 152 (639)
Q Consensus 73 D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 152 (639)
|..||||||||||+|..... ....||||+|+|+.+|++... ........++.++.+ .++|||||||...
T Consensus 82 ~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~Vin~S~g~~~ 150 (297)
T cd04059 82 DDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD-YIDIYSNSWGPDD 150 (297)
T ss_pred cccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-CceEEECCCCCCC
Confidence 77899999999999986321 135899999999999999762 444555566665554 5699999999875
Q ss_pred CCC--CCccchHHHHHHHhHh-----CCcEEEEeccCCCCCCCcc----cCCCCcEEEEEeeccCCccceEEEeCCceEE
Q 006598 153 PLS--TYVDDIISIGSFHAVA-----KGISVVCSAGNSGPYPQTV----INTAPWVITVAASTIDRAFPTAITMGNNQTV 221 (639)
Q Consensus 153 ~~~--~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~----~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~ 221 (639)
... .........++.++.+ +|++||+||||+|...... ....|++|+|||++.+
T Consensus 151 ~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~--------------- 215 (297)
T cd04059 151 DGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN--------------- 215 (297)
T ss_pred CCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC---------------
Confidence 211 1122334455555543 6999999999999732221 1345788899875422
Q ss_pred EeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEE
Q 006598 222 VGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIF 301 (639)
Q Consensus 222 ~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~ 301 (639)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCC
Q 006598 302 AKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPG 381 (639)
Q Consensus 302 ~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG 381 (639)
+.++.||++|+.. +++|||
T Consensus 216 -----------------------------------------------------g~~~~~s~~g~~~--------~~~a~g 234 (297)
T cd04059 216 -----------------------------------------------------GVRASYSEVGSSV--------LASAPS 234 (297)
T ss_pred -----------------------------------------------------CCCcCCCCCCCcE--------EEEecC
Confidence 3667899999988 899999
Q ss_pred Cc-------EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 382 VN-------ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 382 ~~-------I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 235 ~~~~~~~~~i~~~~~~~~--------------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 235 GGSGNPEASIVTTDLGGN--------------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCCCCceEeCCCCCC--------------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 87 666654310 256788999999999999999999999999999999999999985
No 37
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-34 Score=289.55 Aligned_cols=193 Identities=24% Similarity=0.189 Sum_probs=142.6
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHH--HhCCCcEEEEcc
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDA--TFDGVDVISLSL 148 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~dVIn~Sl 148 (639)
..|..||||||||||||. .|++|+|+|+..++... ....+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 457899999999999987 35679999987665321 233456777887 668999999999
Q ss_pred CCCCCCCC-----CccchHHHHHHHhHhC-CcEEEEeccCCCCCCC-----cccCCCCcEEEEEeeccCCccceEEEeCC
Q 006598 149 GSSLPLST-----YVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQ-----TVINTAPWVITVAASTIDRAFPTAITMGN 217 (639)
Q Consensus 149 G~~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~ap~vitVgA~~~~~~~~~~~~~~~ 217 (639)
|... ... +..+.+..+++++.++ |+++|+||||+|.... ..+..++++|+|||++....
T Consensus 94 G~~~-~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~--------- 163 (247)
T cd07488 94 GEGL-KRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD--------- 163 (247)
T ss_pred ccCC-CCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC---------
Confidence 9875 211 1234567777877766 9999999999997532 22345688999998653310
Q ss_pred ceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCce
Q 006598 218 NQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGV 297 (639)
Q Consensus 218 ~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~ 297 (639)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCC--CCCCCCCCCcCC
Q 006598 298 GLIFAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSR--GPSSLSPSVLKP 375 (639)
Q Consensus 298 g~i~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--Gp~~~~~~~~KP 375 (639)
.-..+.||++ +|+. ++..||
T Consensus 164 --------------------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~ 185 (247)
T cd07488 164 --------------------------------------------------------RFFASDVSNAGSEINS--YGRRKV 185 (247)
T ss_pred --------------------------------------------------------cceecccccccCCCCC--CCCcee
Confidence 0123455554 4554 788999
Q ss_pred ceEcCCCcEEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 006598 376 DIAAPGVNILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSP------AAIKSAIVTT 449 (639)
Q Consensus 376 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~------~~vk~~L~~T 449 (639)
||+|||++|++ + .+.|..++|||||||||||++|||+|++|++.+ -++|.+|++|
T Consensus 186 di~APG~~i~s--~-----------------~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 186 LIVAPGSNYNL--P-----------------DGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EEEEeeeeEEC--C-----------------CCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99999999998 3 467899999999999999999999999887764 4566666655
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-33 Score=301.76 Aligned_cols=240 Identities=28% Similarity=0.320 Sum_probs=182.4
Q ss_pred CCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC--CCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006598 74 AVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP--GGCSSADLLAAFDDATFDGVDVISLSLGSS 151 (639)
Q Consensus 74 ~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~--~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 151 (639)
..-|||||||||+|+..+. ....||||+|||+.+++.+.. ...+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 4679999999999998543 245799999999999998653 133456789999999999999999999988
Q ss_pred CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccC---CCCcEEEEEeeccCCccceEEEeCCceEEEeEEeec
Q 006598 152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVIN---TAPWVITVAASTIDRAFPTAITMGNNQTVVGQAFYN 228 (639)
Q Consensus 152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (639)
. .-+.....++.+-+.+-++|+++|+||||.||...|++. ....+|.|||.....+......
T Consensus 381 a-~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~-------------- 445 (1304)
T KOG1114|consen 381 A-HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYS-------------- 445 (1304)
T ss_pred C-CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhh--------------
Confidence 6 311222334443333448899999999999999888775 3457999998543321111000
Q ss_pred CcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006598 229 GKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD 308 (639)
Q Consensus 229 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 308 (639)
+.
T Consensus 446 ----------~~-------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 446 ----------VR-------------------------------------------------------------------- 447 (1304)
T ss_pred ----------hh--------------------------------------------------------------------
Confidence 00
Q ss_pred CCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcCCCcEEecc
Q 006598 309 VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVNILASW 388 (639)
Q Consensus 309 ~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~ 388 (639)
.+.......+|||||+. ||.+--.|+|||+.|-| .
T Consensus 448 ------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAs-V 482 (1304)
T KOG1114|consen 448 ------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIAS-V 482 (1304)
T ss_pred ------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccC-C
Confidence 01124678899999999 99999999999999844 3
Q ss_pred CCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccCCcCCccccccC
Q 006598 389 SPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDEYAQSIVAEG 464 (639)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~ 464 (639)
|.. . -..-..|.|||||+|+++|++|||++ .+-.|||..||.+|++||++++.
T Consensus 483 P~~-------------t-lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~--------- 539 (1304)
T KOG1114|consen 483 PQY-------------T-LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD--------- 539 (1304)
T ss_pred chh-------------h-hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc---------
Confidence 322 2 45668899999999999999999965 56789999999999999997631
Q ss_pred CCCCCCCCCCCCCCCCCcCCcCC
Q 006598 465 APHKQADPFDYGGGHVDPNKAMD 487 (639)
Q Consensus 465 ~~~~~~~~~~~G~G~id~~~A~~ 487 (639)
-.+|.||.|+|++.+|.+
T Consensus 540 -----id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 540 -----IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred -----cchhccCcceeehhHHHH
Confidence 156889999999999976
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=2.7e-30 Score=258.91 Aligned_cols=197 Identities=38% Similarity=0.437 Sum_probs=159.5
Q ss_pred CCCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHH-hCCCcEEEEcc
Q 006598 70 SPRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDAT-FDGVDVISLSL 148 (639)
Q Consensus 70 ~~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~dVIn~Sl 148 (639)
...|..+||||||++|++..... ...|+||+++|+.+|+...........+++++++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999986422 228999999999999998755577889999999999 89999999999
Q ss_pred CCCCCCCCCccchHHHHHHHhHhC-CcEEEEeccCCCCCCC---cccCCCCcEEEEEeeccCCccceEEEeCCceEEEeE
Q 006598 149 GSSLPLSTYVDDIISIGSFHAVAK-GISVVCSAGNSGPYPQ---TVINTAPWVITVAASTIDRAFPTAITMGNNQTVVGQ 224 (639)
Q Consensus 149 G~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVgA~~~~~~~~~~~~~~~~~~~~g~ 224 (639)
|... . .....+..++.++.++ |+++|+|+||.+.... ..+...+++|+||+++...
T Consensus 110 g~~~-~--~~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 110 GGPG-S--PPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCC-C--CCCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 9884 2 1345677778888887 9999999999997765 4666789999999765331
Q ss_pred EeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecC
Q 006598 225 AFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKF 304 (639)
Q Consensus 225 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~ 304 (639)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCee-ecccCCCCCCCCCCCcCCceEcCCCc
Q 006598 305 PTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEV-AFFSSRGPSSLSPSVLKPDIAAPGVN 383 (639)
Q Consensus 305 ~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-a~fSS~Gp~~~~~~~~KPDI~APG~~ 383 (639)
.. ..++++| .|||+.|||..
T Consensus 170 ---------------------------------------------------~~~~~~~~~~--------~~~~~~apg~~ 190 (241)
T cd00306 170 ---------------------------------------------------TPASPSSNGG--------AGVDIAAPGGD 190 (241)
T ss_pred ---------------------------------------------------CccCCcCCCC--------CCceEEeCcCC
Confidence 11 1334444 46699999999
Q ss_pred EEeccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 006598 384 ILASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTT 449 (639)
Q Consensus 384 I~sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~T 449 (639)
+.+..... ...+..++|||||||+|||++|||+|++|++++.++|++|+.|
T Consensus 191 ~~~~~~~~---------------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 191 ILSSPTTG---------------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ccCcccCC---------------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 87751111 5789999999999999999999999999999999999999875
No 40
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=269.43 Aligned_cols=221 Identities=28% Similarity=0.378 Sum_probs=184.3
Q ss_pred CCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 006598 72 RDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSS 151 (639)
Q Consensus 72 ~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 151 (639)
.|.-||||.|||+|||... -.|.||+++|+++|||-+..-.+.++.+.|++||+..++||+|+|+|++
T Consensus 235 dD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP 302 (1033)
T KOG4266|consen 235 DDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP 302 (1033)
T ss_pred ccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence 3678999999999998742 2688999999999999886778899999999999999999999999988
Q ss_pred CCCCCCccchHHHHHHHhHhCCcEEEEeccCCCCCCCcccCCC--CcEEEEEeeccCCccceEEEeCCceEEEeEEeecC
Q 006598 152 LPLSTYVDDIISIGSFHAVAKGISVVCSAGNSGPYPQTVINTA--PWVITVAASTIDRAFPTAITMGNNQTVVGQAFYNG 229 (639)
Q Consensus 152 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a--p~vitVgA~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (639)
. +.+.|+-.-+-.....+|++|.|+||+||-.++..+++ ..||.||..
T Consensus 303 D----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------------- 352 (1033)
T KOG4266|consen 303 D----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------------- 352 (1033)
T ss_pred c----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------------
Confidence 4 77778877777888999999999999999998888765 345555521
Q ss_pred cCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCC
Q 006598 230 KEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDV 309 (639)
Q Consensus 230 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 309 (639)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCC----CCCCcCCceEcCCCcEE
Q 006598 310 HFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSL----SPSVLKPDIAAPGVNIL 385 (639)
Q Consensus 310 ~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~ 385 (639)
+..+.++.|||||-+.+ .-|++||||++-|..|.
T Consensus 353 ------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~ 390 (1033)
T KOG4266|consen 353 ------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVM 390 (1033)
T ss_pred ------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEeeccccc
Confidence 12368999999996643 36899999999999987
Q ss_pred eccCCCCCCccCCCCCCCccCCCceeeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCccCCcCCcccc
Q 006598 386 ASWSPVSNLEQTDHVTPNYIPQFNFKVESGTSMSCPHISGIVALLKA----IHPTWSPAAIKSAIVTTASLKDEYAQSIV 461 (639)
Q Consensus 386 sa~~~~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~vk~~L~~TA~~~~~~g~p~~ 461 (639)
...- ..+...+||||.|+|.|||+++||.+ +.--+.|+-+|++|+..|.++..
T Consensus 391 GS~v-----------------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg------ 447 (1033)
T KOG4266|consen 391 GSKV-----------------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG------ 447 (1033)
T ss_pred cCcc-----------------cccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC------
Confidence 6554 46678899999999999999999976 33447899999999999998732
Q ss_pred ccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006598 462 AEGAPHKQADPFDYGGGHVDPNKAMD 487 (639)
Q Consensus 462 ~~~~~~~~~~~~~~G~G~id~~~A~~ 487 (639)
..-++||+|++|+.++.+
T Consensus 448 --------~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 448 --------PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred --------CchhhccCcchhHHHHHH
Confidence 223589999999988876
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-22 Score=220.75 Aligned_cols=201 Identities=37% Similarity=0.485 Sum_probs=155.8
Q ss_pred CCCCCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCC-CCCCHHHHHHHHHHHHhCC--CcEEEEc
Q 006598 71 PRDAVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAP-GGCSSADLLAAFDDATFDG--VDVISLS 147 (639)
Q Consensus 71 ~~D~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~dVIn~S 147 (639)
..|..+|||||+|++++.... +.....|+||+++++.+|++... +.....+++++++++++.+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 468899999999999984211 12246899999999999999865 6777888899999999999 9999999
Q ss_pred cCCCCCCCCCccchHHHHHHHhHhCC-cEEEEeccCCCCCCCc----ccCCC--CcEEEEEeeccCCccceEEEeCCceE
Q 006598 148 LGSSLPLSTYVDDIISIGSFHAVAKG-ISVVCSAGNSGPYPQT----VINTA--PWVITVAASTIDRAFPTAITMGNNQT 220 (639)
Q Consensus 148 lG~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVgA~~~~~~~~~~~~~~~~~~ 220 (639)
+|.. ........+..++..++..| +++|+|+||.+..... .+... +.+++|+|...
T Consensus 252 ~g~~--~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~--------------- 314 (508)
T COG1404 252 LGGS--LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL--------------- 314 (508)
T ss_pred CCCC--ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC---------------
Confidence 9985 11134456777788887777 9999999999965421 11111 24444443211
Q ss_pred EEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEE
Q 006598 221 VVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLI 300 (639)
Q Consensus 221 ~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i 300 (639)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCCccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCCCCCCCcCCceEcC
Q 006598 301 FAKFPTKDVHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSSLSPSVLKPDIAAP 380 (639)
Q Consensus 301 ~~~~~~~~~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~AP 380 (639)
.+.+..||++|+.. ..+++||
T Consensus 315 -----------------------------------------------------~~~~~~~s~~g~~~------~~~~~ap 335 (508)
T COG1404 315 -----------------------------------------------------SDTVASFSNDGSPT------GVDIAAP 335 (508)
T ss_pred -----------------------------------------------------CCccccccccCCCC------CcceeCC
Confidence 24778899999751 2299999
Q ss_pred CCcEEe-----ccCCCCCCccCCCCCCCccCCC--ceeeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCc
Q 006598 381 GVNILA-----SWSPVSNLEQTDHVTPNYIPQF--NFKVESGTSMSCPHISGIVALLKAIHP-TWSPAAIKSAIVTTAS 451 (639)
Q Consensus 381 G~~I~s-----a~~~~~~~~~~~~~~~~~~~~~--~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~vk~~L~~TA~ 451 (639)
|.+|.+ +++ +. .|..++||||++|||+|.+||+++.+| .+++.+++..+..++.
T Consensus 336 g~~i~~~~~~~~~~-----------------~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 336 GVNILSLSAVNTLP-----------------GDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred Cccccccccceeee-----------------CCccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence 999987 443 33 499999999999999999999999999 8999999999888877
No 42
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.74 E-value=2.1e-17 Score=175.62 Aligned_cols=105 Identities=26% Similarity=0.244 Sum_probs=81.7
Q ss_pred cCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCC-CCCccchHHHHHHHhHhCCc
Q 006598 99 AQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFD---GVDVISLSLGSSLPL-STYVDDIISIGSFHAVAKGI 174 (639)
Q Consensus 99 ~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~-~~~~~~~~~~a~~~a~~~Gi 174 (639)
......||||+|+|+.|++++.. ...++.++.+++.+ +++|||||||..... .....+.+..++.+|.++||
T Consensus 79 Dv~~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi 154 (361)
T cd04056 79 DVEYAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGI 154 (361)
T ss_pred hHHHHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCe
Confidence 44567899999999999998642 45677888888887 999999999987411 00123567788888999999
Q ss_pred EEEEeccCCCCCCC-----------cccCCCCcEEEEEeeccCC
Q 006598 175 SVVCSAGNSGPYPQ-----------TVINTAPWVITVAASTIDR 207 (639)
Q Consensus 175 ~vV~AAGN~G~~~~-----------~~~~~ap~vitVgA~~~~~ 207 (639)
+||+|+||+|.... ..+...|||++||+++...
T Consensus 155 tvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 155 TVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999999997643 2345789999999987654
No 43
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-15 Score=149.80 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=65.3
Q ss_pred CceeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCcc--ccccCCCCCCCCCCCCCCCCCCcCCc
Q 006598 408 FNFKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQS--IVAEGAPHKQADPFDYGGGHVDPNKA 485 (639)
Q Consensus 408 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p--~~~~~~~~~~~~~~~~G~G~id~~~A 485 (639)
.....-||||.|||-.||+-||-++++|.|+..+++.+-.-|.++..-.... ..+....-...-+..||+|.+|+.+.
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 4455679999999999999999999999999999998887777764211100 00000022345566799999999887
Q ss_pred CCCCeeeeCcccchhhhhhcCC
Q 006598 486 MDPGLVYDMEVSDYVRFLCAMG 507 (639)
Q Consensus 486 ~~~~lv~~~~~~~~~~~l~~~~ 507 (639)
+.-...+...++.| -|..|
T Consensus 456 v~lak~wktvppry---hc~ag 474 (629)
T KOG3526|consen 456 VMLAKAWKTVPPRY---HCTAG 474 (629)
T ss_pred HHHHHHhccCCCce---eeccc
Confidence 66433344444433 35555
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.28 E-value=3e-11 Score=111.22 Aligned_cols=114 Identities=22% Similarity=0.267 Sum_probs=88.7
Q ss_pred CceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCC---
Q 006598 234 NKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVH--- 310 (639)
Q Consensus 234 ~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~--- 310 (639)
....++++.+ .|...++...+++|||+||+| |.|.+.+|..+++++||.++|++++......
T Consensus 25 ~~~~~lv~~g-------------~g~~~d~~~~dv~GkIvL~~r--g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~ 89 (143)
T cd02133 25 GKTYELVDAG-------------LGTPEDFEGKDVKGKIALIQR--GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTL 89 (143)
T ss_pred CcEEEEEEcc-------------CCchhccCCCCccceEEEEEC--CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccC
Confidence 4466777643 344555666789999999999 8899999999999999999999988765411
Q ss_pred -ccccccEEEEchhhHHHHHHHHHhcCCcEEEEEeceeeecccCCCeeecccCCCCCC
Q 006598 311 -FSFGVPYIQVDFAIGTSLLTYMEANRNPIVKFSFTKTVIGQQISPEVAFFSSRGPSS 367 (639)
Q Consensus 311 -~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 367 (639)
....||++.|+..+++.|++++++ .+++.+..+.. ..+.+.++.||||||.-
T Consensus 90 ~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 90 GEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 125789999999999999999988 44455444443 44667899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.22 E-value=1.4e-10 Score=104.56 Aligned_cols=120 Identities=35% Similarity=0.642 Sum_probs=96.5
Q ss_pred EEeCCceEEEeEEeecCcCCCCceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcc-hHHHHHHhh
Q 006598 213 ITMGNNQTVVGQAFYNGKEDLNKFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQR-SAATAARTV 291 (639)
Q Consensus 213 ~~~~~~~~~~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~-~~~~k~~~~ 291 (639)
+.++|++.+.|++++.... ..+++++... .........|.+......+++||||||+| +.| .+.+|..++
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~----~~~~~~~~~C~~~~~~~~~v~GkIVlc~~--~~~~~~~~k~~~~ 72 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSA----NSGDVDASLCLPGSLDPSKVKGKIVLCDR--GGNTSRVAKGDAV 72 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccC----cCCCCccccCCCCCCChhhccccEEEEeC--CCCccHHHHHHHH
Confidence 6789999999999985442 4567776322 12334557899888888999999999999 778 999999999
Q ss_pred hcCCceEEEEecCCCCC---CCccccccEEEEchhhHHHHHHHHHhcCCcEEE
Q 006598 292 LDSGGVGLIFAKFPTKD---VHFSFGVPYIQVDFAIGTSLLTYMEANRNPIVK 341 (639)
Q Consensus 292 ~~~Ga~g~i~~~~~~~~---~~~~~~ip~~~i~~~~~~~l~~~~~~~~~~~~~ 341 (639)
+++||.|+|++++..+. ......+|++.|..++++.|++|++++..++++
T Consensus 73 ~~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 73 KAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HHcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999999877654 223468999999999999999999998766554
No 46
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.82 E-value=1.5e-08 Score=90.54 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=72.5
Q ss_pred cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-----C-C--ccccccEEEEchhhHH
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-----V-H--FSFGVPYIQVDFAIGT 326 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-----~-~--~~~~ip~~~i~~~~~~ 326 (639)
.+.|.+..+...+++|||+||+| |.|.|.+|..+++++||.++|++|+.... . . ....||+++|+..+++
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~r--g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~ 106 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDR--GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA 106 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence 47799888877899999999999 89999999999999999999999877632 1 1 3456999999999999
Q ss_pred HHHHHHHhcCCcEEE
Q 006598 327 SLLTYMEANRNPIVK 341 (639)
Q Consensus 327 ~l~~~~~~~~~~~~~ 341 (639)
.|++++.++.+.+++
T Consensus 107 ~l~~~l~~g~~v~~~ 121 (122)
T cd04816 107 ALRRRLGAGETLELD 121 (122)
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999888765543
No 47
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.81 E-value=2.8e-08 Score=90.31 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=73.9
Q ss_pred cccCccCCCCC--CCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC-CC------CCccccccEEEEchh
Q 006598 253 GSARSCESGTL--NATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT-KD------VHFSFGVPYIQVDFA 323 (639)
Q Consensus 253 ~~~~~c~~~~~--~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~-~~------~~~~~~ip~~~i~~~ 323 (639)
...+.|.+... .+.++.|+|+|++| |.|+|.+|..+++++||.++|+||+.. .. ......+|+++|+..
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~R--G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~ 119 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQR--GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNP 119 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHH
Confidence 34578998776 56789999999999 999999999999999999999999886 21 122357899999999
Q ss_pred hHHHHHHHHHhcCCcEEEE
Q 006598 324 IGTSLLTYMEANRNPIVKF 342 (639)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~i 342 (639)
+|+.|+.++.++.+.+++|
T Consensus 120 ~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 120 KGMEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHHHcCCcEEEeC
Confidence 9999999999988766653
No 48
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.79 E-value=2.3e-08 Score=87.85 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=69.7
Q ss_pred cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-----C--CccccccEEEEchhhH
Q 006598 253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-----V--HFSFGVPYIQVDFAIG 325 (639)
Q Consensus 253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-----~--~~~~~ip~~~i~~~~~ 325 (639)
.....|....+...+++|||+|++| |.|+|.+|..+++++||.++|+||+.... . .....||+++|+.++|
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~R--G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG 105 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMR--GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDM 105 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEEC--CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHH
Confidence 3457799988888889999999999 99999999999999999999999987642 1 1346789999999999
Q ss_pred HHHHHHHHhc
Q 006598 326 TSLLTYMEAN 335 (639)
Q Consensus 326 ~~l~~~~~~~ 335 (639)
+.|++.+.++
T Consensus 106 ~~i~~~l~~~ 115 (120)
T cd02129 106 LDIQQTFGDS 115 (120)
T ss_pred HHHHHHhccC
Confidence 9999888743
No 49
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.75 E-value=1.3e-07 Score=83.27 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=62.0
Q ss_pred EEecccCccEEEEEEEEEcCCCCeeEEEEEeC--------CCC----------c-eEEEecCeEEEcCCCcEEEEEEEEE
Q 006598 539 ITIPELKKSITVSRQVTNVSPMNSVYTARVQA--------PAG----------T-TVRVEPSTLTFNSTRKKLKFKVTFY 599 (639)
Q Consensus 539 ~~~~~~~~~~~~~~tvtn~~~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~v~~~ 599 (639)
|+|++.....+++++|+|.|+...+|+++... ..| . .+...|.++++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 45666666799999999999999999998751 111 1 56777888999 6899999999999
Q ss_pred Eee---cCCCceEEEEEEEEcC-c-eEEEEeEE
Q 006598 600 SRL---RVQGRYSFGNLFWEDG-I-HVVRIPLI 627 (639)
Q Consensus 600 ~~~---~~~~~~~~G~i~~~~~-~-~~v~~P~~ 627 (639)
+++ ..++.|++|||.+++. . +.+++||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 863 2558999999999985 4 48999985
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.74 E-value=5.6e-08 Score=85.85 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=71.0
Q ss_pred cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----C-------CccccccEEEEchh
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----V-------HFSFGVPYIQVDFA 323 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~-------~~~~~ip~~~i~~~ 323 (639)
.+.|.+.. ...+++|||+|++| |.|.|.+|..+++++||.++|+||+.... . .....||+++|+..
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIER--GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCC-CccccCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 46798643 35679999999999 99999999999999999999999876541 1 12357999999999
Q ss_pred hHHHHHHHHHhcCCcEEEE
Q 006598 324 IGTSLLTYMEANRNPIVKF 342 (639)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~i 342 (639)
+|+.|+..+..+..+++.|
T Consensus 98 dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 98 NGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHcCCceEEee
Confidence 9999999999988776654
No 51
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.74 E-value=1.4e-07 Score=84.41 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=69.7
Q ss_pred cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCC-CC------CCccccccEEEEchhhHHH
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPT-KD------VHFSFGVPYIQVDFAIGTS 327 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~-~~------~~~~~~ip~~~i~~~~~~~ 327 (639)
...|.+..+ +.+++|||+|++| |.|.|.+|..+++++||.++|+||+.. .. ......||++.|+.++++.
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~r--g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~ 107 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIER--GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA 107 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence 346876555 3579999999999 999999999999999999999998773 22 1134679999999999999
Q ss_pred HHHHHHhcCCcEEE
Q 006598 328 LLTYMEANRNPIVK 341 (639)
Q Consensus 328 l~~~~~~~~~~~~~ 341 (639)
|+..++++.+.+++
T Consensus 108 L~~~l~~g~~v~~~ 121 (122)
T cd02130 108 LVAALANGGEVSAN 121 (122)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999998876654
No 52
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.72 E-value=1.7e-08 Score=87.02 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=64.7
Q ss_pred cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-------CCccccccEEEEchhhH
Q 006598 253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-------VHFSFGVPYIQVDFAIG 325 (639)
Q Consensus 253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~ip~~~i~~~~~ 325 (639)
.....|.+......+++||||||+| |.|+|.+|..+++++||.|+|+++..... ......||+++|+.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~gkIvlv~r--g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g 94 (101)
T PF02225_consen 17 IDEGDCCPSDYNGSDVKGKIVLVER--GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDG 94 (101)
T ss_dssp EECCHHHHHHTSTSTCTTSEEEEES--TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHH
T ss_pred CCcccccccccCCccccceEEEEec--CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHH
Confidence 3456677888889999999999999 99999999999999999999999922111 34568899999999999
Q ss_pred HHHHHHH
Q 006598 326 TSLLTYM 332 (639)
Q Consensus 326 ~~l~~~~ 332 (639)
+.|++|+
T Consensus 95 ~~L~~~i 101 (101)
T PF02225_consen 95 EALLAYI 101 (101)
T ss_dssp HHHHHHH
T ss_pred hhhhccC
Confidence 9999986
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.66 E-value=1.1e-07 Score=84.40 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=70.7
Q ss_pred ccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC--C-----CccccccEEEEchhhHH
Q 006598 254 SARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD--V-----HFSFGVPYIQVDFAIGT 326 (639)
Q Consensus 254 ~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~--~-----~~~~~ip~~~i~~~~~~ 326 (639)
..+.|.+.... .+++|||+||.| +.|.|.+|..+++++||.|+|++++.... . .....+|+++|+.++++
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~r--g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDR--GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEEC--CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 45679887763 469999999998 88999999999999999999999877643 1 12357999999999999
Q ss_pred HHHHHHHhcCCcEEE
Q 006598 327 SLLTYMEANRNPIVK 341 (639)
Q Consensus 327 ~l~~~~~~~~~~~~~ 341 (639)
.|++|++.+...+++
T Consensus 103 ~l~~~l~~g~~v~v~ 117 (118)
T cd04818 103 ALKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHHhcCCcEEEe
Confidence 999999988766554
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.64 E-value=2.4e-07 Score=82.95 Aligned_cols=85 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred cCccCCCCCC--Cc----cccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-C-------------Ccccc
Q 006598 255 ARSCESGTLN--AT----LVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-V-------------HFSFG 314 (639)
Q Consensus 255 ~~~c~~~~~~--~~----~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-~-------------~~~~~ 314 (639)
.+.|.+.... +. ...++|+|++| |.|.|.+|..+++++||.++|+||+..+. . .....
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR--GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC--CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 4678875442 22 37789999999 99999999999999999999999987543 1 11346
Q ss_pred ccEEEEchhhHHHHHHHHHhcCCcEEE
Q 006598 315 VPYIQVDFAIGTSLLTYMEANRNPIVK 341 (639)
Q Consensus 315 ip~~~i~~~~~~~l~~~~~~~~~~~~~ 341 (639)
||+++|+..+|+.|+..+..+...+++
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 999999999999999999988876654
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.64 E-value=1.3e-07 Score=84.77 Aligned_cols=83 Identities=25% Similarity=0.234 Sum_probs=68.5
Q ss_pred cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC------------CC---ccccccEEE
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD------------VH---FSFGVPYIQ 319 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~------------~~---~~~~ip~~~ 319 (639)
...|.+... +.+++|||+|++| |.|+|.+|..+++++||.++|++|+..+. .. ....||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~R--G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMER--GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEEC--CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 467886554 5578999999999 99999999999999999999999765431 11 245799999
Q ss_pred EchhhHHHHHHHHHhcCCcEE
Q 006598 320 VDFAIGTSLLTYMEANRNPIV 340 (639)
Q Consensus 320 i~~~~~~~l~~~~~~~~~~~~ 340 (639)
|+..+|+.|+..++.+...++
T Consensus 104 I~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 104 LFSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EEHHHHHHHHHHHHhCCceEE
Confidence 999999999999998776554
No 56
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=1.6e-07 Score=84.31 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=69.1
Q ss_pred cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----CCccccccEEEEchhhHHHH
Q 006598 253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----VHFSFGVPYIQVDFAIGTSL 328 (639)
Q Consensus 253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~~~~~~ip~~~i~~~~~~~l 328 (639)
...+.|.+...+..+++|||+|++| |.|.|.+|..+++++||.++|+|++.... ..+...+|.+.+ +++|+.|
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~r--g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l 115 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRR--GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAW 115 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHH
Confidence 3457898876666689999999999 88999999999999999999999877543 223344566666 9999999
Q ss_pred HHHHHhcCCcEEE
Q 006598 329 LTYMEANRNPIVK 341 (639)
Q Consensus 329 ~~~~~~~~~~~~~ 341 (639)
+..++.+...+++
T Consensus 116 ~~~l~~G~~vtv~ 128 (129)
T cd02124 116 IDALAAGSNVTVD 128 (129)
T ss_pred HHHHhcCCeEEEe
Confidence 9999888765543
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=1.4e-07 Score=86.16 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=68.5
Q ss_pred cCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCCCC---------ccccccEEEEchhhH
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKDVH---------FSFGVPYIQVDFAIG 325 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~---------~~~~ip~~~i~~~~~ 325 (639)
.+.|.+.. .+++|||+|++| |.|+|.+|..+++++||.++|+||+...... ....||+++|+..+|
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~R--G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G 122 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVER--GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG 122 (139)
T ss_pred ccccCCCC---cccCCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence 46788764 378999999999 9999999999999999999999987653311 135799999999999
Q ss_pred HHHHHHHHhcCCcEEE
Q 006598 326 TSLLTYMEANRNPIVK 341 (639)
Q Consensus 326 ~~l~~~~~~~~~~~~~ 341 (639)
+.|+..+.++...+++
T Consensus 123 ~~L~~~l~~g~~Vtv~ 138 (139)
T cd02132 123 DALNKSLDQGKKVEVL 138 (139)
T ss_pred HHHHHHHHcCCcEEEe
Confidence 9999999988765543
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.58 E-value=2.1e-07 Score=83.51 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=70.9
Q ss_pred ccCccCCCC--CCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----C-----CccccccEEEEch
Q 006598 254 SARSCESGT--LNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----V-----HFSFGVPYIQVDF 322 (639)
Q Consensus 254 ~~~~c~~~~--~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~-----~~~~~ip~~~i~~ 322 (639)
....|.+.. +...+++||||||+| +.|.|.+|..+++++||.|+|++++.... . .....+|++.|+.
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~--g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~ 106 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR--GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY 106 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC--CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence 345688776 677889999999998 88999999999999999999999877532 1 1346799999999
Q ss_pred hhHHHHHHHHHhcCCcEE
Q 006598 323 AIGTSLLTYMEANRNPIV 340 (639)
Q Consensus 323 ~~~~~l~~~~~~~~~~~~ 340 (639)
++++.|++++.++.+.++
T Consensus 107 ~~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 107 ADGEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHHHhcCCceEE
Confidence 999999999998765544
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.58 E-value=2.1e-07 Score=81.98 Aligned_cols=79 Identities=9% Similarity=0.077 Sum_probs=66.0
Q ss_pred cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-----C----CccccccEEEEchh
Q 006598 253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-----V----HFSFGVPYIQVDFA 323 (639)
Q Consensus 253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-----~----~~~~~ip~~~i~~~ 323 (639)
...+.|.+. +..+++|||+|++| |.|+|.+|..+++++||.++|+||+.... . .....||+++++.+
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~R--G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~ 100 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLR--GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRT 100 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHH
Confidence 345789766 55889999999999 99999999999999999999999876542 1 23357999999999
Q ss_pred hHHHHHHHHHhc
Q 006598 324 IGTSLLTYMEAN 335 (639)
Q Consensus 324 ~~~~l~~~~~~~ 335 (639)
++++|+.++.++
T Consensus 101 ~g~~L~~l~~~~ 112 (117)
T cd04813 101 SYHLLSSLLPKS 112 (117)
T ss_pred HHHHHHHhcccc
Confidence 999999887654
No 60
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.51 E-value=4e-07 Score=82.35 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCCCccccccEEEEEeCCCcch-----HHHHHHhhhcCCceEEEEecCC--CCC----CC---ccccccEEEEchhhHHH
Q 006598 262 TLNATLVRGKIVICFQSQFQRS-----AATAARTVLDSGGVGLIFAKFP--TKD----VH---FSFGVPYIQVDFAIGTS 327 (639)
Q Consensus 262 ~~~~~~~~gkivl~~~~~g~~~-----~~~k~~~~~~~Ga~g~i~~~~~--~~~----~~---~~~~ip~~~i~~~~~~~ 327 (639)
++...+++|||+|++| |.|. |.+|.++++++||.++|+||+. .+. +. ....||+++|++++++.
T Consensus 49 d~~~~d~~GkIaLI~R--G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 49 SYICGGMAGKICLIER--GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred cccCCCcCccEEEEEC--CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence 3445679999999999 8999 9999999999999999999997 332 12 14689999999999999
Q ss_pred HHHHHHhc
Q 006598 328 LLTYMEAN 335 (639)
Q Consensus 328 l~~~~~~~ 335 (639)
|+..+..+
T Consensus 127 L~~~l~~~ 134 (139)
T cd04817 127 LLAALGQS 134 (139)
T ss_pred HHHHhcCC
Confidence 99988544
No 61
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.46 E-value=6.9e-07 Score=82.92 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=68.7
Q ss_pred cCccCCCCCCC---ccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC----CC-----ccccccEEEEch
Q 006598 255 ARSCESGTLNA---TLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD----VH-----FSFGVPYIQVDF 322 (639)
Q Consensus 255 ~~~c~~~~~~~---~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~----~~-----~~~~ip~~~i~~ 322 (639)
.+.|.+....+ .++.|+|+|++| |.|+|.+|..+++++||.++|++|+..+. .. ....||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R--G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR--GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 46798766544 789999999999 99999999999999999999999987553 11 145899999999
Q ss_pred hhHHHHHHHHHhcCC
Q 006598 323 AIGTSLLTYMEANRN 337 (639)
Q Consensus 323 ~~~~~l~~~~~~~~~ 337 (639)
.+++.|+.++.....
T Consensus 128 ~dg~~L~~~l~~~~~ 142 (153)
T cd02123 128 STGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999987654
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.26 E-value=1.2e-05 Score=72.21 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=62.2
Q ss_pred CCCCccccccEEEEEeCCCcc--hHHHHHHhhhcCCceEEEEecCCCCCC----------CccccccEEEEchhhHHHHH
Q 006598 262 TLNATLVRGKIVICFQSQFQR--SAATAARTVLDSGGVGLIFAKFPTKDV----------HFSFGVPYIQVDFAIGTSLL 329 (639)
Q Consensus 262 ~~~~~~~~gkivl~~~~~g~~--~~~~k~~~~~~~Ga~g~i~~~~~~~~~----------~~~~~ip~~~i~~~~~~~l~ 329 (639)
++...+++|||+++++ +.| .+.+|..++.++||.|+|++++..... .....||++.|+.++++.|.
T Consensus 37 d~~~~~v~GkIvlv~~--g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 37 DFDGLDLEGKIAVVKR--DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred HcCCCCCCCeEEEEEc--CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 3446679999999999 778 899999999999999999998765531 12357999999999999999
Q ss_pred HHHHhcCCc
Q 006598 330 TYMEANRNP 338 (639)
Q Consensus 330 ~~~~~~~~~ 338 (639)
+.++.+...
T Consensus 115 ~~l~~g~~~ 123 (127)
T cd04819 115 RVAERNDTL 123 (127)
T ss_pred HHHhcCCce
Confidence 999876543
No 63
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00026 Score=82.74 Aligned_cols=114 Identities=23% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCCCchhhHHhhccCCCCCCccccccCccceeecCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC
Q 006598 74 AVGHGTHTSSTAAGGMVKDASFLGLAQGLARGGAPLAWLAIYKICWAPGGCSSADLLAAFDDATFDGV-DVISLSLGSSL 152 (639)
Q Consensus 74 ~~GHGTHVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~ 152 (639)
..+|+||=+.-+ -++-....-+||+|+|..+=.- ......+..|+.+-...-+ -+|-+||+...
T Consensus 270 g~~~~~~g~~E~-----------sLDVE~s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~ 334 (1174)
T COG4934 270 GIGSGTGGAEET-----------SLDVEWSHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAE 334 (1174)
T ss_pred CCCCCCCccccc-----------eeehhhhhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHH
Confidence 457877744311 1233445678999999988662 1222222233332222111 33335666533
Q ss_pred -CCCCC--ccchHHHHHHHhHhCCcEEEEeccCCCCCCCc--------ccCCCCcEEEEEe
Q 006598 153 -PLSTY--VDDIISIGSFHAVAKGISVVCSAGNSGPYPQT--------VINTAPWVITVAA 202 (639)
Q Consensus 153 -~~~~~--~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVgA 202 (639)
.++++ .-+.+......|.++||.+++|+|.+|....+ .+..+|+|++||-
T Consensus 335 ~~~~~~~~~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 335 FQGPISPGYADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred hccCCChHHHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 12222 22455566667889999999999999865432 2346799999995
No 64
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.40 E-value=0.00041 Score=62.91 Aligned_cols=76 Identities=18% Similarity=0.129 Sum_probs=61.5
Q ss_pred CCccccccEEEEEeCCCcc------hHHHH-------HHhhhcCCceEEEEecCCCC------C----C-CccccccEEE
Q 006598 264 NATLVRGKIVICFQSQFQR------SAATA-------ARTVLDSGGVGLIFAKFPTK------D----V-HFSFGVPYIQ 319 (639)
Q Consensus 264 ~~~~~~gkivl~~~~~g~~------~~~~k-------~~~~~~~Ga~g~i~~~~~~~------~----~-~~~~~ip~~~ 319 (639)
...+++||||++.+ +.| .|..| ...+++.||.++|+++.... . . .....||++.
T Consensus 34 ~~~~v~GKIvlv~~--~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 34 PAGAVKGKIVFFNQ--PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred chhhcCCeEEEecC--CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 45689999999999 889 88888 79999999999999985421 1 1 2235699999
Q ss_pred EchhhHHHHHHHHHhcCCcEEE
Q 006598 320 VDFAIGTSLLTYMEANRNPIVK 341 (639)
Q Consensus 320 i~~~~~~~l~~~~~~~~~~~~~ 341 (639)
|+.++++.|...++.+..+.++
T Consensus 112 is~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 112 ISVEDADMLERLAARGKPIRVN 133 (134)
T ss_pred echhcHHHHHHHHhCCCCeEEe
Confidence 9999999999999988765543
No 65
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00091 Score=72.42 Aligned_cols=74 Identities=26% Similarity=0.217 Sum_probs=54.9
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCccCCcCCccccccCCCCCCCCCCCCCCCCCCcCCcCC
Q 006598 412 VESGTSMSCPHISGIVALLKAIHPTWSPAAIKSAIVTTASLKDEYAQSIVAEGAPHKQADPFDYGGGHVDPNKAMD 487 (639)
Q Consensus 412 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~L~~TA~~~~~~g~p~~~~~~~~~~~~~~~~G~G~id~~~A~~ 487 (639)
--.|||-++|+.||+.+|.++++|.++..++..++..++..........+.+ .....-...+|+|++|+..-+.
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n--~~g~~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSN--GAGGLVSHLYGFGLLDAKALVS 324 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEe--cCCceeeeeecccccCcchhhh
Confidence 3469999999999999999999999999999999998888653322222222 1222233358999999977665
No 66
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.99 E-value=0.0013 Score=62.32 Aligned_cols=68 Identities=21% Similarity=0.179 Sum_probs=55.1
Q ss_pred CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC--------------------------------CC--
Q 006598 265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD--------------------------------VH-- 310 (639)
Q Consensus 265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~--------------------------------~~-- 310 (639)
..+++|||+|+++ |.|.+.+|..+|+++||.|+|+|++..+. .+
T Consensus 51 gv~v~GkIvLvr~--G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRA--GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEEC--CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 4679999999999 88999999999999999999999874211 00
Q ss_pred ---ccccccEEEEchhhHHHHHHHHHh
Q 006598 311 ---FSFGVPYIQVDFAIGTSLLTYMEA 334 (639)
Q Consensus 311 ---~~~~ip~~~i~~~~~~~l~~~~~~ 334 (639)
.--.||+.-|+..++..|++.+.-
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013488999999999999987753
No 67
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.96 E-value=0.0018 Score=68.37 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=64.9
Q ss_pred CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC---------CCccccccEEEEchhhHHHHHHHHHhc
Q 006598 265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD---------VHFSFGVPYIQVDFAIGTSLLTYMEAN 335 (639)
Q Consensus 265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---------~~~~~~ip~~~i~~~~~~~l~~~~~~~ 335 (639)
...+++|++++.| |+|.|.+|...++++||.++++.|+..+. ...+..||+++|.+++++.+......+
T Consensus 91 ~~kl~~~~~~v~R--GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFR--GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEec--ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 4568999999999 99999999999999999999999995433 224578999999999999999877777
Q ss_pred CCcEEEEEe
Q 006598 336 RNPIVKFSF 344 (639)
Q Consensus 336 ~~~~~~i~~ 344 (639)
.+.++.+..
T Consensus 169 ~~V~~~lYa 177 (541)
T KOG2442|consen 169 DNVELALYA 177 (541)
T ss_pred CeEEEEEEC
Confidence 766554443
No 68
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.53 E-value=0.0089 Score=55.01 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=54.0
Q ss_pred cCccCCCCCCCccccccEEEEEeCC----------------CcchHHHHHHhhhcCCceEEEEecCCCCCCCccccc---
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQ----------------FQRSAATAARTVLDSGGVGLIFAKFPTKDVHFSFGV--- 315 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~----------------g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~~i--- 315 (639)
...|....+...+++|||||+.+.. ..|.+..|..++.+.||.|+|+|++.....+.....
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~ 112 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRF 112 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCccccccccc
Confidence 3557767777889999999998741 127889999999999999999998876542221111
Q ss_pred ---cEEEEchhhHHHHHHH
Q 006598 316 ---PYIQVDFAIGTSLLTY 331 (639)
Q Consensus 316 ---p~~~i~~~~~~~l~~~ 331 (639)
....++....+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 113 GGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CccceEEechHHHHHHhhh
Confidence 2555666665555543
No 69
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.45 E-value=0.089 Score=45.03 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=60.5
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEcCceEEEEe
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDGIHVVRIP 625 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~~~v~~P 625 (639)
...+.+++|+|.|..+..|++.........++++|..-.+ ++|++.+++|++... .....+.+.|...-....+.+|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~--~~~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT--KPLGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC--CCCceEEEEEEEEECCeEEEEE
Confidence 4667778899999999999997654334567777776555 679999999999843 2233468888877666778888
Q ss_pred EEEEe
Q 006598 626 LIVRT 630 (639)
Q Consensus 626 ~~~~~ 630 (639)
+-+..
T Consensus 97 v~a~~ 101 (102)
T PF14874_consen 97 VKAEV 101 (102)
T ss_pred EEEEE
Confidence 76654
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.28 E-value=0.0059 Score=55.51 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=49.4
Q ss_pred ceeeeEEccccccCCCCccccCccCCCCCCCccccccEEEEEeCCCcc------------------hHHHHHHhhhcCCc
Q 006598 235 KFYPIVIGKDIATFDADEGSARSCESGTLNATLVRGKIVICFQSQFQR------------------SAATAARTVLDSGG 296 (639)
Q Consensus 235 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~g~~------------------~~~~k~~~~~~~Ga 296 (639)
...|+++.+-. .....|...++...|++||||++.+ |.| .+..|..++.++||
T Consensus 20 ~~aelVfvGyG-------i~a~~~~~dDYag~DVkGKIVlv~~--g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA 90 (142)
T cd04814 20 KDAPLVFVGYG-------IKAPELSWDDYAGLDVKGKVVVVLR--NDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGA 90 (142)
T ss_pred cceeeEEecCC-------cCCCCCChhhcCCCCCCCcEEEEEc--CCCCcccccccccccccccccCHHHHHHHHHHCCC
Confidence 35666665321 1234677788888999999999998 555 57889999999999
Q ss_pred eEEEEecCCCC
Q 006598 297 VGLIFAKFPTK 307 (639)
Q Consensus 297 ~g~i~~~~~~~ 307 (639)
.|+|++++...
T Consensus 91 ~gvIii~~~~~ 101 (142)
T cd04814 91 AGVLIVHELAP 101 (142)
T ss_pred cEEEEEeCCCc
Confidence 99999988653
No 71
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.18 E-value=0.0083 Score=54.24 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=42.9
Q ss_pred cCccCCCCCCCccccccEEEEEeCCCcc------------hHHHHHHhhhcCCceEEEEecCCCC
Q 006598 255 ARSCESGTLNATLVRGKIVICFQSQFQR------------SAATAARTVLDSGGVGLIFAKFPTK 307 (639)
Q Consensus 255 ~~~c~~~~~~~~~~~gkivl~~~~~g~~------------~~~~k~~~~~~~Ga~g~i~~~~~~~ 307 (639)
...|...++...+++|||||+.+ +.| .+.+|.+++.++||.|+|+++....
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~--g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLS--GGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEc--CCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 35677777778899999999998 554 3789999999999999999988654
No 72
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.88 E-value=0.029 Score=45.63 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=38.9
Q ss_pred ccEEEEEEEEEcCCCC-eeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEee-cCCCce
Q 006598 546 KSITVSRQVTNVSPMN-SVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRL-RVQGRY 608 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~ 608 (639)
...+++.+|+|.|... ...++++..|+|-.+...|.++.--++|++++++++|+++. +..+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 4688899999999755 56888899999999888888776447899999999999873 333444
No 73
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.40 E-value=0.017 Score=52.54 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=37.1
Q ss_pred ccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC
Q 006598 266 TLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD 308 (639)
Q Consensus 266 ~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 308 (639)
.+++|||+|++. |...+..|.++|++.||.|+|||.++.+.
T Consensus 37 V~v~GkIvi~Ry--G~~~RG~Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 37 MNVTNQIALLKL--GQAPLLYKLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred CCccceEEEEec--cCcchHHHHHHHHHCCCeEEEEecChhhc
Confidence 679999999999 78889999999999999999999887543
No 74
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.30 E-value=0.019 Score=51.60 Aligned_cols=85 Identities=9% Similarity=0.059 Sum_probs=63.7
Q ss_pred cccCccCCCCCCCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC---------CC----ccccccEEE
Q 006598 253 GSARSCESGTLNATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD---------VH----FSFGVPYIQ 319 (639)
Q Consensus 253 ~~~~~c~~~~~~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~---------~~----~~~~ip~~~ 319 (639)
....+|... .+..+..+.+++++| |.|+|..|..+++++||.++|+.++.... ++ +...||+.+
T Consensus 72 dPp~aC~el-rN~~f~~d~vaL~eR--GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~f 148 (193)
T KOG3920|consen 72 DPPHACEEL-RNEIFAPDSVALMER--GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVF 148 (193)
T ss_pred CChhHHHHH-hhcccCCCcEEEEec--CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEE
Confidence 345677654 234567889999999 99999999999999999999998776543 22 347799999
Q ss_pred EchhhHHHHHHHHHhcCCcEE
Q 006598 320 VDFAIGTSLLTYMEANRNPIV 340 (639)
Q Consensus 320 i~~~~~~~l~~~~~~~~~~~~ 340 (639)
+...+|..++.-++.-...-+
T Consensus 149 llg~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 149 LLGVTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred EeccceEEEehhHHHhCCccE
Confidence 988888776666655443333
No 75
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.074 Score=55.26 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=61.5
Q ss_pred CccCCCCC---CCccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCCC-------CCccccccEEEEchhhH
Q 006598 256 RSCESGTL---NATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTKD-------VHFSFGVPYIQVDFAIG 325 (639)
Q Consensus 256 ~~c~~~~~---~~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~~-------~~~~~~ip~~~i~~~~~ 325 (639)
++|.+... ........++++.| |.|+|.+|..+|+.+|..+.|+||+.... .+....+++.+++...|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~R--g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRR--GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEc--cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 56776332 23445678999999 88999999999999999999999977654 23457789999999999
Q ss_pred HHHHHHHHhc
Q 006598 326 TSLLTYMEAN 335 (639)
Q Consensus 326 ~~l~~~~~~~ 335 (639)
+.|++|....
T Consensus 141 e~l~~~~~~~ 150 (348)
T KOG4628|consen 141 ELLSSYAGRT 150 (348)
T ss_pred HHHHHhhccc
Confidence 9999875443
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.09 E-value=0.021 Score=56.03 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=37.1
Q ss_pred CccccccEEEEEeCCCcchHHHHHHhhhcCCceEEEEecCCCC
Q 006598 265 ATLVRGKIVICFQSQFQRSAATAARTVLDSGGVGLIFAKFPTK 307 (639)
Q Consensus 265 ~~~~~gkivl~~~~~g~~~~~~k~~~~~~~Ga~g~i~~~~~~~ 307 (639)
..+++|||||+++ |.+.+.+|..+|++.||.|+|+|+...+
T Consensus 67 gvdv~GKIvLvr~--G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARY--GGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEEC--CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 5689999999999 8888899999999999999999987654
No 77
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.10 E-value=1.1 Score=39.53 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=39.3
Q ss_pred cEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeec
Q 006598 547 SITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLR 603 (639)
Q Consensus 547 ~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 603 (639)
.-..+++|+|.+..+.+|++++..++|+++......+++ ++|++.++.|.+.++..
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 345678899999999999999998889999655578888 67999999999998744
No 78
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=90.04 E-value=3 Score=37.02 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=49.7
Q ss_pred CccEEEEEEEEEcCCCCeeEEEEEeC----CCCc--------------------eEEEecCeEEEcCCCcEEEEEEEEEE
Q 006598 545 KKSITVSRQVTNVSPMNSVYTARVQA----PAGT--------------------TVRVEPSTLTFNSTRKKLKFKVTFYS 600 (639)
Q Consensus 545 ~~~~~~~~tvtn~~~~~~ty~~~~~~----~~g~--------------------~v~v~p~~~~~~~~g~~~~~~v~~~~ 600 (639)
+..++++++|+|.++...+|.+++.. ..|+ -+++ |..+++ +++|++++++++..
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 45788999999999999999998631 1111 1112 444777 67999999999998
Q ss_pred eecCCCceEEEEEEEE
Q 006598 601 RLRVQGRYSFGNLFWE 616 (639)
Q Consensus 601 ~~~~~~~~~~G~i~~~ 616 (639)
+...-.+.+-|-|.+.
T Consensus 104 P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 104 PKKAFDGIILGGIYFS 119 (121)
T ss_pred CCCCcCCEEEeeEEEE
Confidence 7655556677777765
No 79
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=87.77 E-value=8.6 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=47.7
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEeC---CC----CceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEc
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQA---PA----GTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWED 617 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~~---~~----g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~ 617 (639)
+..+.+++|+|.++.+..+.+.+.. .. .-.+-++|..+.+ ++|++++++| +.....+......=+|.+..
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 3457789999999988888888764 11 1257899999999 5799999999 76433234433344455543
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=84.39 E-value=1.2 Score=41.33 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCCCccccccEEEEEeCCCc-----------------chHHHHHHhhhcCCceEEEEecCCC
Q 006598 262 TLNATLVRGKIVICFQSQFQ-----------------RSAATAARTVLDSGGVGLIFAKFPT 306 (639)
Q Consensus 262 ~~~~~~~~gkivl~~~~~g~-----------------~~~~~k~~~~~~~Ga~g~i~~~~~~ 306 (639)
++...|++||||++.+.+.. -....|...+.+.||.|+|++....
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 56678999999999864210 1245699999999999999997653
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.57 E-value=9.3 Score=41.24 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=54.9
Q ss_pred ccEEEEEEEEEcCCCCe-eEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEee-cCCCceEEEEEEEEc
Q 006598 546 KSITVSRQVTNVSPMNS-VYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRL-RVQGRYSFGNLFWED 617 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~-ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~G~i~~~~ 617 (639)
...++...+.|.|+.+. .-.+++..|+|-++.|+|.++---++|+.+++++|++++. +..+.| +=+|.-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEee
Confidence 46788889999998774 5668889999999999999765557899999999999874 444554 44455444
No 82
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.75 E-value=14 Score=40.48 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=45.3
Q ss_pred cEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEe
Q 006598 547 SITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSR 601 (639)
Q Consensus 547 ~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 601 (639)
....+.++.|.+..+.+|+++++..++..+...+..+++ ++||+.++.|.+..+
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 455677889999999999999998888888776557778 579999999999876
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.45 E-value=34 Score=37.08 Aligned_cols=56 Identities=13% Similarity=0.287 Sum_probs=44.5
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEe-CCCCceEEEecC-----eEEEcCCCcEEEEEEEEEEee
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQ-APAGTTVRVEPS-----TLTFNSTRKKLKFKVTFYSRL 602 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~v~~~~~~ 602 (639)
.+..+++++.|.|....+|.+++. .|+|-...+.-. ++.+ .+||+++|+|.+.++.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~ 345 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSL 345 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCC
Confidence 466888899999999999999998 888776665433 3444 5799999999998763
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.21 E-value=27 Score=29.75 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=39.3
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEe
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSR 601 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 601 (639)
...+..++|+|.++...-|.+....|.. ..|.|..-.+ .+|++.++.|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEec
Confidence 4577778999999999999998887764 5567887766 679999999999863
No 85
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=69.08 E-value=55 Score=27.07 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=37.0
Q ss_pred CcCeEEecccCccEEEEEEEEEcCCCCeeEEEEEe-----CCCCceEEEecCeEEEcCCCc-EEEEEEEEE
Q 006598 535 NLPSITIPELKKSITVSRQVTNVSPMNSVYTARVQ-----APAGTTVRVEPSTLTFNSTRK-KLKFKVTFY 599 (639)
Q Consensus 535 n~ps~~~~~~~~~~~~~~tvtn~~~~~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~g~-~~~~~v~~~ 599 (639)
..+++.+.+-.+ +++++|...|......+|.+. +-+|........+|+|. +|| .++|+|.+.
T Consensus 7 ~~~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F~-~ge~~k~i~i~i~ 74 (90)
T smart00237 7 EQPVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTFP-PGETEKCIRIKII 74 (90)
T ss_pred CCCeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEEC-CCCEEEEEEEEEe
Confidence 345667766544 455666666655555555543 44566666667889995 455 455555554
No 86
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=68.63 E-value=1.3e+02 Score=36.20 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=38.1
Q ss_pred CCcCeEEecccCccEEEEEEEEEcC-CCCeeEEEEEe-----CCCCceEEEecCeEEEcCCCcE-EEEEEEEEE
Q 006598 534 LNLPSITIPELKKSITVSRQVTNVS-PMNSVYTARVQ-----APAGTTVRVEPSTLTFNSTRKK-LKFKVTFYS 600 (639)
Q Consensus 534 ln~ps~~~~~~~~~~~~~~tvtn~~-~~~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~g~~-~~~~v~~~~ 600 (639)
+..+++.+.+-.| +++++|+-.| +...+.+|.+. +-+|.+......+|+|. +||+ ++++|.+.-
T Consensus 404 Fe~~~Y~V~En~G--tV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~-PGEt~KtItV~IID 474 (928)
T TIGR00845 404 FEPGHYTCLENCG--TVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFK-PGETQKEFRIGIID 474 (928)
T ss_pred ecCCeEEEeecCc--EEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEEC-CCceEEEEEEEEcc
Confidence 3445666665434 4556666555 44444555543 45677777778899995 5664 566666553
No 87
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=63.96 E-value=31 Score=24.57 Aligned_cols=44 Identities=32% Similarity=0.295 Sum_probs=24.1
Q ss_pred EEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEE
Q 006598 552 RQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTF 598 (639)
Q Consensus 552 ~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~ 598 (639)
++++|.|+.+..-. .++..=|-.. ++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 67899997665432 2222222221 22222234 689999988874
No 88
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=60.86 E-value=53 Score=27.09 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=32.5
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEE
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTF 598 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~ 598 (639)
....++++|+|.|....++++.-..- -.-.|.++++ ++|+++++...+
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEee
Confidence 34588899999998888888875211 1123455677 568887777666
No 89
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=60.25 E-value=51 Score=26.92 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=25.5
Q ss_pred EEEEEEEEEcCCCC--------eeEEEEEeCCCCceEEEe---------cCeEEEcCCCcEEEEEEEEEEe
Q 006598 548 ITVSRQVTNVSPMN--------SVYTARVQAPAGTTVRVE---------PSTLTFNSTRKKLKFKVTFYSR 601 (639)
Q Consensus 548 ~~~~~tvtn~~~~~--------~ty~~~~~~~~g~~v~v~---------p~~~~~~~~g~~~~~~v~~~~~ 601 (639)
..++++|+|.++.+ ..|.+.+..+.|-.|.-- -...++ ++||+++|+.++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLK 71 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS-
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCC
Confidence 34667778877543 344444554555544321 223445 679999999888643
No 90
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=59.79 E-value=86 Score=28.45 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=46.2
Q ss_pred EEEEEEEEEcCCCC-eeEEEEEeCCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEE
Q 006598 548 ITVSRQVTNVSPMN-SVYTARVQAPAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWE 616 (639)
Q Consensus 548 ~~~~~tvtn~~~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~ 616 (639)
..+...|-|..+.. ..-++....-.+.++--.|..+++ .+++.++++.++++.+ ...+.+||.|++.
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 33444556665322 333444445567788788888888 5789999999999764 4566899999885
No 91
>PLN03080 Probable beta-xylosidase; Provisional
Probab=52.15 E-value=54 Score=38.90 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=31.6
Q ss_pred cEEEEEEEEEcCCCCe--eEEEEEeCCCCceEEEecC-------eEEEcCCCcEEEEEEEEEE
Q 006598 547 SITVSRQVTNVSPMNS--VYTARVQAPAGTTVRVEPS-------TLTFNSTRKKLKFKVTFYS 600 (639)
Q Consensus 547 ~~~~~~tvtn~~~~~~--ty~~~~~~~~g~~v~v~p~-------~~~~~~~g~~~~~~v~~~~ 600 (639)
..+|+++|||+|+... +-.+-+..|... +. .|. ++.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~-~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PG-VPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CC-CcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4778999999997544 444444444321 11 121 2334 67999998888875
No 92
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.77 E-value=1.3e+02 Score=24.59 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=31.9
Q ss_pred CccEEEEEEEEEcCCC-CeeEEEEEeCCCCceEEEecCeE-EEcCCCcEEEEEEEEEEe
Q 006598 545 KKSITVSRQVTNVSPM-NSVYTARVQAPAGTTVRVEPSTL-TFNSTRKKLKFKVTFYSR 601 (639)
Q Consensus 545 ~~~~~~~~tvtn~~~~-~~ty~~~~~~~~g~~v~v~p~~~-~~~~~g~~~~~~v~~~~~ 601 (639)
....+++.+|+|.|.. ...+.+.+... |..+ .-..+ .+ ++|+++++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 3578899999999975 45666665433 2222 11112 33 578998888888764
No 93
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=50.46 E-value=1.1e+02 Score=25.60 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=35.6
Q ss_pred cCCcCeEEecccCccEEEEEEEEEcCC--CCeeEEEEEe---CCCCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCC
Q 006598 533 NLNLPSITIPELKKSITVSRQVTNVSP--MNSVYTARVQ---APAGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQG 606 (639)
Q Consensus 533 ~ln~ps~~~~~~~~~~~~~~tvtn~~~--~~~ty~~~~~---~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~ 606 (639)
.+..+++.+.+-.+...+.+++++ +. ...+..+... +-.|......+.+|+|.+...++++.|++--+.....
T Consensus 14 ~f~~~~~~v~E~~~~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~dD~~~E~ 91 (100)
T PF03160_consen 14 SFSSPSYTVSEGDGTVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIIDDDIPEG 91 (100)
T ss_dssp EESSSEEEEETTSSEEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB---SSTTS
T ss_pred EEeCCEEEEEeCCCEEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeCCCCcCC
Confidence 344567777665555554444444 32 2333333221 3357777777888999654446677777653333333
No 94
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=46.40 E-value=70 Score=37.90 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=41.5
Q ss_pred ccccCCcCeEEeccc---------CccEEEEEEEEEcCCCC--eeEEEEEeCCCCceEEEecC-------eEEEcCCCcE
Q 006598 530 FLVNLNLPSITIPEL---------KKSITVSRQVTNVSPMN--SVYTARVQAPAGTTVRVEPS-------TLTFNSTRKK 591 (639)
Q Consensus 530 ~~~~ln~ps~~~~~~---------~~~~~~~~tvtn~~~~~--~ty~~~~~~~~g~~v~v~p~-------~~~~~~~g~~ 591 (639)
+..-|.|..|...++ .+..+++++|||+|+-. ++-.+-+..|.+- +. .|. ++.+ ++||+
T Consensus 642 FG~GLSYT~F~ys~l~v~~~~~~~~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes 718 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKLSSPTMKRDGKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGET 718 (765)
T ss_pred ccCCCCCccEEeeccEeccccccCCCeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCe
Confidence 344566666665433 23578889999999744 4444444545332 11 121 2334 68999
Q ss_pred EEEEEEEEEe
Q 006598 592 LKFKVTFYSR 601 (639)
Q Consensus 592 ~~~~v~~~~~ 601 (639)
+++++++...
T Consensus 719 ~~V~~~l~~~ 728 (765)
T PRK15098 719 QTVSFPIDIE 728 (765)
T ss_pred EEEEEeecHH
Confidence 9988888754
No 95
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.72 E-value=2.1e+02 Score=27.29 Aligned_cols=63 Identities=13% Similarity=0.310 Sum_probs=38.9
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEeC----CCCceEEEecCeEEEc--CCCcEEEEEEEEEEeecCCCceEEE
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQA----PAGTTVRVEPSTLTFN--STRKKLKFKVTFYSRLRVQGRYSFG 611 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~~----~~g~~v~v~p~~~~~~--~~g~~~~~~v~~~~~~~~~~~~~~G 611 (639)
...+++++|.|+|+. .-|.|++.. ++++++.--..+.++. ++|++.+..+++++. ..|.|.++
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~--~~G~f~~~ 106 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK--KSGYFNFT 106 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee--eeEEEEcc
Confidence 578899999999965 556676653 2344442111122222 679999988888863 34555444
No 96
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=44.45 E-value=1.3e+02 Score=26.00 Aligned_cols=73 Identities=25% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceeec-CCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccchHHHHHHHhHhC-CcEEEE
Q 006598 103 ARGGA-PLAWLAIYKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAK-GISVVC 178 (639)
Q Consensus 103 ~~GvA-P~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~ 178 (639)
+.+.. ++++|+.+=-+ ++|....++.-+++..+.|+++|-+|--......+..---++.......++ |+-||.
T Consensus 30 F~~y~~~~~elvgf~~C---gGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 30 FARYDDEDVELVGFFTC---GGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred cccCCCCCeEEEEEeeC---CCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 34444 57888887555 679999999999999999999999886655311000101122223333344 888775
No 97
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=43.47 E-value=11 Score=16.65 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=4.4
Q ss_pred cccCCC
Q 006598 359 FFSSRG 364 (639)
Q Consensus 359 ~fSS~G 364 (639)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577876
No 98
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=42.31 E-value=72 Score=25.73 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=28.0
Q ss_pred eEEEecCeEEEcCCCcEEEEEEEEEEeecCCCceEEEEEEEEcC
Q 006598 575 TVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGRYSFGNLFWEDG 618 (639)
Q Consensus 575 ~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~ 618 (639)
.+++.|..+++ ..|++..|++++..... .. ...+.|++.
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~--~~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA--KV--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC--Cc--cceEEEEEC
Confidence 57788998888 47999999999763221 11 567888875
No 99
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=42.06 E-value=26 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=19.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcCc
Q 006598 427 VALLKAIHPTWSPAAIKSAIVTTAS 451 (639)
Q Consensus 427 aALl~q~~p~ls~~~vk~~L~~TA~ 451 (639)
+--|++.+|+|+...|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3467889999999999999976543
No 100
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=38.18 E-value=2.5e+02 Score=23.79 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=34.7
Q ss_pred CccEEEEEEEEEcCCCC-eeEEEEE-----eCCCCce---EEEecCeEEEcCCCcEEEEEEEEEEe
Q 006598 545 KKSITVSRQVTNVSPMN-SVYTARV-----QAPAGTT---VRVEPSTLTFNSTRKKLKFKVTFYSR 601 (639)
Q Consensus 545 ~~~~~~~~tvtn~~~~~-~ty~~~~-----~~~~g~~---v~v~p~~~~~~~~g~~~~~~v~~~~~ 601 (639)
+...++..+++|..+.. .+-++.+ .- .|+. .+..-..+++ +++++.++++++...
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 45789999999999777 5533333 32 3553 4555555666 579999999998754
No 101
>PRK13203 ureB urease subunit beta; Reviewed
Probab=36.09 E-value=1.2e+02 Score=25.89 Aligned_cols=16 Identities=25% Similarity=0.129 Sum_probs=12.6
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (102)
T PRK13203 18 GRETVTLTVANTGDRP 33 (102)
T ss_pred CCCEEEEEEEeCCCCc
Confidence 4567889999999754
No 102
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=35.57 E-value=1.2e+02 Score=25.88 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=12.6
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRp 33 (101)
T cd00407 18 GREAVTLKVKNTGDRP 33 (101)
T ss_pred CCCEEEEEEEeCCCcc
Confidence 4667789999999754
No 103
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=33.90 E-value=1.8e+02 Score=28.96 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=38.5
Q ss_pred cEEEEEEEEEcCCCCeeEEEEEe---CC---C----------CceEEEecCeEEEcCCCcEEEEEEEEEE
Q 006598 547 SITVSRQVTNVSPMNSVYTARVQ---AP---A----------GTTVRVEPSTLTFNSTRKKLKFKVTFYS 600 (639)
Q Consensus 547 ~~~~~~tvtn~~~~~~ty~~~~~---~~---~----------g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 600 (639)
.....++|.|.|+.+..+++++. .| . .-.+-++|..|++ ++|+++.|+|.-..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 45567889999998888888763 22 1 1257789999998 57888888876653
No 104
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=33.88 E-value=1.4e+02 Score=25.45 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=12.5
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRP 33 (101)
T ss_pred CCcEEEEEEEeCCCcc
Confidence 4567789999999754
No 105
>PRK15019 CsdA-binding activator; Provisional
Probab=33.21 E-value=42 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=28.5
Q ss_pred eeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 006598 410 FKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKS 444 (639)
Q Consensus 410 y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~ 444 (639)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455666 67999999999999999999999876
No 106
>PRK13202 ureB urease subunit beta; Reviewed
Probab=32.85 E-value=1.5e+02 Score=25.39 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=11.6
Q ss_pred EEEEEEEEEcCCCC
Q 006598 548 ITVSRQVTNVSPMN 561 (639)
Q Consensus 548 ~~~~~tvtn~~~~~ 561 (639)
.+++++|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 67889999999754
No 107
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=32.84 E-value=53 Score=34.59 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=45.8
Q ss_pred ceeecCCCeEEE-----EEeecCCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCccchHHHHHHHhHhCCcEEE
Q 006598 103 ARGGAPLAWLAI-----YKICWAPGGCSSADLLAAFDDATFDGVDVISLSLGSSLPLSTYVDDIISIGSFHAVAKGISVV 177 (639)
Q Consensus 103 ~~GvAP~A~L~~-----~kv~~~~~~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 177 (639)
+.=+|-.++|+. ||..+ +.++ ..++++|++-|.+| |-+ .|.+......-+.|.++|+.||
T Consensus 77 l~emak~~~vivN~vGPyR~hG-------E~VV---kacienG~~~vDIS-GEP----~f~E~mq~kYhd~A~ekGVYIV 141 (423)
T KOG2733|consen 77 LDEMAKQARVIVNCVGPYRFHG-------EPVV---KACIENGTHHVDIS-GEP----QFMERMQLKYHDLAKEKGVYIV 141 (423)
T ss_pred HHHHHhhhEEEEeccccceecC-------cHHH---HHHHHcCCceeccC-CCH----HHHHHHHHHHHHHHHhcCeEEE
Confidence 355677888776 34333 3344 44788999888776 222 1555556667778999999999
Q ss_pred EeccCCC
Q 006598 178 CSAGNSG 184 (639)
Q Consensus 178 ~AAGN~G 184 (639)
-|.|=+-
T Consensus 142 saCGfDS 148 (423)
T KOG2733|consen 142 SACGFDS 148 (423)
T ss_pred eecccCC
Confidence 9998664
No 108
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=31.95 E-value=46 Score=30.25 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=29.1
Q ss_pred eeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 006598 410 FKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKSA 445 (639)
Q Consensus 410 y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~ 445 (639)
-..+.|.| =|++|-|.+|||++.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998743
No 109
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=31.01 E-value=41 Score=22.25 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHH
Q 006598 418 MSCPHISGIVALL 430 (639)
Q Consensus 418 mAaP~VAG~aALl 430 (639)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999988754
No 110
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=30.11 E-value=73 Score=32.90 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=49.3
Q ss_pred ceeecCCCeEEEEEeecCCC------CCC----------HHHHHHHHHHHHhCCCcEEEEccCCCCC-CC---------C
Q 006598 103 ARGGAPLAWLAIYKICWAPG------GCS----------SADLLAAFDDATFDGVDVISLSLGSSLP-LS---------T 156 (639)
Q Consensus 103 ~~GvAP~A~L~~~kv~~~~~------~~~----------~~~i~~ai~~a~~~g~dVIn~SlG~~~~-~~---------~ 156 (639)
++-+||-+.|-+-..+|... .+. .+.-+.-+++|+.+|.+||+ |.|.... .+ .
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 67789999888776665421 111 11223457789999999996 6776541 11 1
Q ss_pred CccchHHHHHHHhH-----hCCcEEEEecc
Q 006598 157 YVDDIISIGSFHAV-----AKGISVVCSAG 181 (639)
Q Consensus 157 ~~~~~~~~a~~~a~-----~~Gi~vV~AAG 181 (639)
-..||+++.+.+-. .-||.||+|+-
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 23478888877533 44788999863
No 111
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=29.80 E-value=3.9e+02 Score=23.58 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=43.3
Q ss_pred ccEEEEEEEEEcCCCCeeEE----EEEeCCCCc----eEEE---ecCeEEEcCCCcEEEEEEEEEEeecCCC--ce-EEE
Q 006598 546 KSITVSRQVTNVSPMNSVYT----ARVQAPAGT----TVRV---EPSTLTFNSTRKKLKFKVTFYSRLRVQG--RY-SFG 611 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~----~~~~~~~g~----~v~v---~p~~~~~~~~g~~~~~~v~~~~~~~~~~--~~-~~G 611 (639)
+...+.+++||.|+.+-+-. |......|. ...- .+..+++ ++|++..+.|.......... .. ..+
T Consensus 18 g~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~~~ 96 (131)
T PF14016_consen 18 GQRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTPAG 96 (131)
T ss_pred CccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCccccCE
Confidence 56688899999986543322 222222222 1111 3456777 67999999999986533222 12 233
Q ss_pred EEEEEc--CceEEEEeE
Q 006598 612 NLFWED--GIHVVRIPL 626 (639)
Q Consensus 612 ~i~~~~--~~~~v~~P~ 626 (639)
|.... +...+++|+
T Consensus 97 -l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 97 -LTVTPPGGTAPVTVPW 112 (131)
T ss_pred -EEEECCCCCccEEEeC
Confidence 33332 345556654
No 112
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=29.76 E-value=78 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcC
Q 006598 426 IVALLKAIHPTWSPAAIKSAIVTTA 450 (639)
Q Consensus 426 ~aALl~q~~p~ls~~~vk~~L~~TA 450 (639)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998643
No 113
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=29.57 E-value=46 Score=30.21 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=28.5
Q ss_pred eeeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 006598 410 FKVESGTSMSCPHISGIVALLKAIHPTWSPAAIKS 444 (639)
Q Consensus 410 y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~ 444 (639)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 66 ~~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 66 IIELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34455666 68999999999999999999999875
No 114
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=29.50 E-value=2.3e+02 Score=20.83 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=25.3
Q ss_pred CccEEEEEEEEEcCCCCee-EEEEEeCCCCceEEEecCeEEE
Q 006598 545 KKSITVSRQVTNVSPMNSV-YTARVQAPAGTTVRVEPSTLTF 585 (639)
Q Consensus 545 ~~~~~~~~tvtn~~~~~~t-y~~~~~~~~g~~v~v~p~~~~~ 585 (639)
....+++++++|.|....+ ..++-..|+|..+ .|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 4578888999999976654 4444456777554 3444444
No 115
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=29.44 E-value=1.6e+02 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=12.0
Q ss_pred ccEEEEEEEEEcCCCCe
Q 006598 546 KSITVSRQVTNVSPMNS 562 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ 562 (639)
+..+++++|+|.|+.+-
T Consensus 17 gr~~~~l~V~N~GDRPI 33 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPI 33 (100)
T ss_dssp TSEEEEEEEEE-SSS-E
T ss_pred CCcEEEEEEEeCCCcce
Confidence 56788899999997553
No 116
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.08 E-value=1.4e+02 Score=23.56 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred CccEEEEEEEEEcCCCCee-EEEEEeCCCCceE
Q 006598 545 KKSITVSRQVTNVSPMNSV-YTARVQAPAGTTV 576 (639)
Q Consensus 545 ~~~~~~~~tvtn~~~~~~t-y~~~~~~~~g~~v 576 (639)
+...+++++|+|.|+.... ..+.-..|+|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 3578889999999976643 4455455666654
No 117
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.82 E-value=5.8e+02 Score=25.21 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=36.0
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEeCC---CCceEEEecCeEEEcCCCcEEEEEEEEE
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQAP---AGTTVRVEPSTLTFNSTRKKLKFKVTFY 599 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~~~---~g~~v~v~p~~~~~~~~g~~~~~~v~~~ 599 (639)
+....+++|+|.++.+-.-...++.. ....+-++|..+++ ++|+++.++|...
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~ 93 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILK 93 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEEC
Confidence 45667789999986543222333321 12458899999999 5789999888765
No 118
>PRK13201 ureB urease subunit beta; Reviewed
Probab=28.27 E-value=1.7e+02 Score=26.12 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=12.5
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (136)
T PRK13201 18 HHPETVIEVENTGDRP 33 (136)
T ss_pred CCCEEEEEEEeCCCcc
Confidence 4567789999999754
No 119
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=28.25 E-value=6.1e+02 Score=25.26 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=38.8
Q ss_pred ccEEEEEEEEEcCCCCeeEEEEEe----------CC--CCceEEEecCeEEEcCCCcEEEEEEEEEEeecCCCc
Q 006598 546 KSITVSRQVTNVSPMNSVYTARVQ----------AP--AGTTVRVEPSTLTFNSTRKKLKFKVTFYSRLRVQGR 607 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~~ty~~~~~----------~~--~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~ 607 (639)
+...++++|+|.++.+ |-+... .+ .-.-+.++|.-+.+ ++++++.++|.......+...
T Consensus 36 ~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl-~p~~~~~lRI~~~~~~LP~DR 106 (234)
T PRK15192 36 GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFML-SARQENSMRVVYTGAPLPADR 106 (234)
T ss_pred CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEE-CCCCceEEEEEECCCCCCCcc
Confidence 5677889999998653 555431 01 01237799999999 578989999887643334443
No 120
>PRK13205 ureB urease subunit beta; Reviewed
Probab=27.49 E-value=1.8e+02 Score=26.69 Aligned_cols=16 Identities=6% Similarity=-0.016 Sum_probs=12.8
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 18 GR~~i~L~V~NtGDRP 33 (162)
T PRK13205 18 GREAKTIEIINTGDRP 33 (162)
T ss_pred CCcEEEEEEEeCCCCc
Confidence 5677889999999754
No 121
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=26.86 E-value=66 Score=28.64 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=26.3
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 006598 412 VESGTSMSCPHISGIVALLKAIHPTWSPAAIKSA 445 (639)
Q Consensus 412 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~~ 445 (639)
.+.|.|= |++|-|++|||.+.+-..+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556654 67999999999999999999998753
No 122
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=26.59 E-value=8e+02 Score=26.13 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=27.8
Q ss_pred CccEEEEEEEEEcCCCCee---EE---EEEeCCC--------------CceEEEecCeEEEcCCCcEEEEEEEEE
Q 006598 545 KKSITVSRQVTNVSPMNSV---YT---ARVQAPA--------------GTTVRVEPSTLTFNSTRKKLKFKVTFY 599 (639)
Q Consensus 545 ~~~~~~~~tvtn~~~~~~t---y~---~~~~~~~--------------g~~v~v~p~~~~~~~~g~~~~~~v~~~ 599 (639)
.++.+++++|||.|+.+.. |+ +..-.|. .--++|+|.+- + ++||+++++|+++
T Consensus 262 gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I-~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-I-APGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-c-CCCceEEEEEEee
Confidence 3678899999999976542 21 1111111 00234455432 2 5799999999886
No 123
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.59 E-value=59 Score=29.62 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=25.3
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 006598 412 VESGTSMSCPHISGIVALLKAIHPTWSPAAIKS 444 (639)
Q Consensus 412 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~vk~ 444 (639)
.+.|=| =|++|.|.+|++++.+-..+|++|.+
T Consensus 73 ~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 334444 26899999999999999999998753
No 124
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.22 E-value=64 Score=24.14 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=24.3
Q ss_pred CceeeeccccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 006598 408 FNFKVESGTSMSCPHISGIVA------LLKAIHPTWSPAAIKSAIV 447 (639)
Q Consensus 408 ~~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~ls~~~vk~~L~ 447 (639)
++--.+.||=+..=.|....+ -|.+.||.|+.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 444566677777666655532 3456799999999999984
No 125
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=24.63 E-value=3.5e+02 Score=27.99 Aligned_cols=22 Identities=18% Similarity=-0.010 Sum_probs=12.2
Q ss_pred EEEEEEEEEcCCCCeeEEEEEe
Q 006598 548 ITVSRQVTNVSPMNSVYTARVQ 569 (639)
Q Consensus 548 ~~~~~tvtn~~~~~~ty~~~~~ 569 (639)
..++++|+|..+.+.+-+|.-+
T Consensus 244 ~~~~itv~N~~~~~v~v~v~d~ 265 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVEDQ 265 (317)
T ss_pred EEEEEEEECCCCCCEEEEEEeC
Confidence 4455566777655555444433
No 126
>PRK13204 ureB urease subunit beta; Reviewed
Probab=23.62 E-value=2.3e+02 Score=26.07 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=12.8
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 41 gr~~~~l~V~NtGDRP 56 (159)
T PRK13204 41 GRPRTTLTVRNTGDRP 56 (159)
T ss_pred CCcEEEEEEEeCCCCc
Confidence 5677889999999754
No 127
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=22.18 E-value=39 Score=36.69 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.6
Q ss_pred CccccCCCCCCCCC
Q 006598 1 MDTGIWPESESFKD 14 (639)
Q Consensus 1 IDtGId~~Hp~F~~ 14 (639)
+|||||+.||.++-
T Consensus 30 ~dtgvd~~~~~lq~ 43 (412)
T cd04857 30 LDTGVDPGAPGLQV 43 (412)
T ss_pred ecCCCCCCCCcccc
Confidence 69999999999954
No 128
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=22.15 E-value=5e+02 Score=22.15 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=28.2
Q ss_pred cEEEEEEEEEcCCCCeeEE---EEEeCCCCceEEEec---------CeEEEcCCCcEEEEEEEEEEeec
Q 006598 547 SITVSRQVTNVSPMNSVYT---ARVQAPAGTTVRVEP---------STLTFNSTRKKLKFKVTFYSRLR 603 (639)
Q Consensus 547 ~~~~~~tvtn~~~~~~ty~---~~~~~~~g~~v~v~p---------~~~~~~~~g~~~~~~v~~~~~~~ 603 (639)
-..++++|+|.++....+. ..+....|-...... ..-++ .+|++++..+.|+++..
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~~ 104 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPKD 104 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEESTT
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECCC
Confidence 4677889999987666543 223223333322111 12234 57888888888888643
No 129
>PRK08227 autoinducer 2 aldolase; Validated
Probab=22.06 E-value=2.7e+02 Score=28.26 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=19.5
Q ss_pred chHHHHHHhhhcCCceEEEEecCC
Q 006598 282 RSAATAARTVLDSGGVGLIFAKFP 305 (639)
Q Consensus 282 ~~~~~k~~~~~~~Ga~g~i~~~~~ 305 (639)
..+.+....+.++|+.|+.+-.|-
T Consensus 206 ~~~L~~v~~ai~aGa~Gv~~GRNI 229 (264)
T PRK08227 206 RDALEMCYQAIDEGASGVDMGRNI 229 (264)
T ss_pred HHHHHHHHHHHHcCCceeeechhh
Confidence 446778888999999999987664
No 130
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.69 E-value=2.7e+02 Score=28.92 Aligned_cols=73 Identities=22% Similarity=0.370 Sum_probs=51.3
Q ss_pred cCCCeEEEEEeecCCCCCCHHHHHHHHHHHHhCC----CcEEEEccCCCCCCCC---CccchHHHHHHHhHhCCcEEEEe
Q 006598 107 APLAWLAIYKICWAPGGCSSADLLAAFDDATFDG----VDVISLSLGSSLPLST---YVDDIISIGSFHAVAKGISVVCS 179 (639)
Q Consensus 107 AP~A~L~~~kv~~~~~~~~~~~i~~ai~~a~~~g----~dVIn~SlG~~~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 179 (639)
.|.+++..|-+.-. |......|++||+.+-+.+ +|||-+-=|+.+ -.+ +-+..+.+ ...+.-+.||.|
T Consensus 39 ~~~~~~~~~p~~vQ-G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-~eDL~~FN~e~var---ai~~~~~Pvisa 113 (319)
T PF02601_consen 39 NPIVEIILYPASVQ-GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-IEDLWAFNDEEVAR---AIAASPIPVISA 113 (319)
T ss_pred CCCcEEEEEecccc-ccchHHHHHHHHHHHHhccccccccEEEEecCCCC-hHHhcccChHHHHH---HHHhCCCCEEEe
Confidence 56677776666544 6678899999999998865 999999999875 111 11223333 334667999999
Q ss_pred ccCCC
Q 006598 180 AGNSG 184 (639)
Q Consensus 180 AGN~G 184 (639)
-|-+-
T Consensus 114 IGHe~ 118 (319)
T PF02601_consen 114 IGHET 118 (319)
T ss_pred cCCCC
Confidence 99875
No 131
>PRK13198 ureB urease subunit beta; Reviewed
Probab=21.39 E-value=2.7e+02 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=12.7
Q ss_pred ccEEEEEEEEEcCCCC
Q 006598 546 KSITVSRQVTNVSPMN 561 (639)
Q Consensus 546 ~~~~~~~tvtn~~~~~ 561 (639)
+..+++++|+|.|+.+
T Consensus 46 gr~~~~l~V~NtGDRP 61 (158)
T PRK13198 46 NKPVTKVKVRNTGDRP 61 (158)
T ss_pred CCcEEEEEEEeCCCCc
Confidence 4577889999999754
Done!