BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006605
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 144/448 (32%), Positives = 205/448 (45%), Gaps = 55/448 (12%)
Query: 130 TTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRG 189
TT + +FLG P V + +IV+G +D+GI+P PSF P P PK++G
Sbjct: 1 TTRSWDFLGFPLTV----PRRSQVESNIVVGVLDTGIWPESPSFDDEGFSP--PPPKWKG 54
Query: 190 KCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAAGNN 249
CE + + CN KIIG D P D +GHG+HTA+ AAG
Sbjct: 55 TCETSNNFR---CNRKIIGARSYHIGRPISPG-----DVNGPRDTNGHGTHTASTAAGGL 106
Query: 250 GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSLSVG 309
++G G A G P ARIA YK + G GVDI+SLSVG
Sbjct: 107 VSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSVG 165
Query: 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDD 369
+P + F++ + AV+ G+ + +AGNGGP T S SPW+ +VAA+ D
Sbjct: 166 GANP----RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 221
Query: 370 RRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNK 429
R++ + +GNG+ G+ ++ T N+ + LV+ D+ ++ K ++ C V N
Sbjct: 222 RKFVTQVQIGNGQSFQGVSIN--TFDNQYYPLVSGRDI-PNTGFDKSTSRFCTDKSV-NP 277
Query: 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPG 489
NL++G I++C SF E KSL A VL N P+P
Sbjct: 278 NLLKGKIVVCEASFG----------PHEFFKSLDGAAGVLMTSNTRDYADSYPLP----- 322
Query: 490 ILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGP 549
+ V DL+ +T R + S + G IL+ SAP V FS+RGP
Sbjct: 323 ---SSVLDPNDLL-----ATLR----YIYSIRSPGATIFKSTTILNASAPVVVSFSSRGP 370
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAW 577
N D++KPDI PG I AAW
Sbjct: 371 N-----RATKDVIKPDISGPGVEILAAW 393
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 207/456 (45%), Gaps = 58/456 (12%)
Query: 130 TTHTPEFLGL--PTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPK- 186
TTHT +FL L +G+WP G G+D+++ +DSGI+P SF D +PK
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASF---QDDGMPEIPKR 53
Query: 187 YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAA 246
++G C+ S CN K+IG + S D DGHG+H A+I A
Sbjct: 54 WKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVN-ITMNSARDTDGHGTHCASITA 112
Query: 247 GNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSL 306
GN V G+ G A G+APRAR+AVYK + G F GVD++S+
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMISI 171
Query: 307 SVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366
S G P + + + A+ GV V+ +AGN GP +L + SPWI VA+
Sbjct: 172 SYGYRFIP-----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226
Query: 367 IDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVM-KYSASDCQRPE 425
DR + L LGNG + G L PA R F + DS V+ + SDC E
Sbjct: 227 HTDRTFAGTLTLGNGLKIRGWSLFPA----RAF--------VRDSPVIYNKTLSDCSSEE 274
Query: 426 VLNK-NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVP 484
+L++ E I++C + +F I T L AA F+ + PG F
Sbjct: 275 LLSQVENPENTIVICDDNGDFSDQMRII-----TRARLKAAIFI----SEDPGV-FRSAT 324
Query: 485 VGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF 544
PG+++ + + +++Y S T T TI + K AP VA
Sbjct: 325 FPNPGVVV-NKKEGKQVINYVKNSVTP-----------TATITFQETYLDTKPAPVVAAS 372
Query: 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN 580
SARGP S + KPDILAPG LI AA+ PN
Sbjct: 373 SARGP-----SRSYLGISKPDILAPGVLILAAYPPN 403
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 20/138 (14%)
Query: 226 VDFA----SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL 281
VDF +P D +GHG+H A+IAAG G+ GMAP A++ K L
Sbjct: 165 VDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ 217
Query: 282 FGG----FXXXXXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGV 337
G G+ +++LS+G + T + + A AG+
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDS-----LSQAVNNAWDAGL 272
Query: 338 FVAQAAGNGGPFPKTLVS 355
V AAGN GP T+ S
Sbjct: 273 VVVVAAGNSGPNKYTVGS 290
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 231 PLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
P+D + HG+H A IAA NN + +GMAP RI +AL R G
Sbjct: 66 PMDLNNHGTHVAGIAAAETNNATGI----------AGMAPNTRILAVRALDRNGSGTLSD 115
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G ++++LS+G + TT N + A G V AAGN G
Sbjct: 116 IADAIIYAADSGAEVINLSLGCDCH----TTTLENAVNY----AWNKGSVVVAAAGNNG 166
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L GG
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGGGSNSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPNAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGADGRGAISS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA NN I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGASGSGSVSS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA +N I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 230 SPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXX 288
S DG+GHG+H A IAA +N I V G+AP A + K L G
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISS 104
Query: 289 XXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
G+ + +LS+G SP AT + + +A GV V A+GN G
Sbjct: 105 IAQGLEWAGNNGMHVANLSLGSPSPSAT--------LEQAVNSATSRGVLVVAASGNEG 155
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 69 LEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128
+++ +D + L + Y + + LI V PD +I R PG+ S RD+
Sbjct: 74 VKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKI--RKPGLNSTARDYG-EE 130
Query: 129 LTTHT--PEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGP 183
L+ E +G+ +W + +G +I++ VD+G+ HP Y P
Sbjct: 131 LSNELWGLEAIGVTQQLWE-----EASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRP 182
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 229 ASPLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFX 286
++P +G+GHG+H A IAA NN + +G AP+A I + L G
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNNSTGI----------AGTAPKASILAVRVLDNSGSGTW 112
Query: 287 XXXXXXXXXXXXXGVDILSLSVG 309
G ++SLS+G
Sbjct: 113 TAVANGITYAADQGAKVISLSLG 135
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG HG+H A IAA NN I V G+AP A + K L G
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
+D++++S+G P +T + AV +G+ VA AAGN G
Sbjct: 110 GIEWAISNNMDVINMSLG--GPTGSTA------LKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 229 ASPLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFX 286
++P +G+GHG+H A IAA NN + +G AP+A I + L G
Sbjct: 63 STPQNGNGHGTHCAGIAAAVTNNSTGI----------AGTAPKASILAVRVLDNSGSGTW 112
Query: 287 XXXXXXXXXXXXXGVDILSLSVG 309
G ++SLS+G
Sbjct: 113 TAVANGITYAADQGAKVISLSLG 135
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG HG+H A IAA NN I V G+AP A + K L G
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVAPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
+D++++S+G P +T + AV +G+ VA AAGN G
Sbjct: 110 GIEWAISNNMDVINMSLG--GPTGSTA------LKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 233 DGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXX 291
DG HG+H A IAA NN I V G++P A + K L G
Sbjct: 60 DGSSHGTHVAGTIAALNNSIGVL----------GVSPSASLYAVKVLDSTGSGQYSWIIN 109
Query: 292 XXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
+D++++S+G P +T + AV +G+ VA AAGN G
Sbjct: 110 GIEWAISNNMDVINMSLG--GPTGSTA------LKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWS 578
VA FS+RGP KD +KPD++APG+ I +A S
Sbjct: 201 HVAQFSSRGP-TKD------GRIKPDVMAPGTFILSARS 232
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 7/39 (17%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWS 578
VA FS+RGP KD +KPD++APG+ I +A S
Sbjct: 201 HVAQFSSRGP-TKD------GRIKPDVMAPGTFILSARS 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,020,771
Number of Sequences: 62578
Number of extensions: 880698
Number of successful extensions: 1896
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 79
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)