Query 006605
Match_columns 639
No_of_seqs 387 out of 3231
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 11:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07478 Peptidases_S8_CspA-lik 100.0 5.9E-50 1.3E-54 435.2 23.2 416 152-636 1-443 (455)
2 cd04852 Peptidases_S8_3 Peptid 100.0 5.7E-49 1.2E-53 410.7 26.5 232 126-365 1-233 (307)
3 cd07497 Peptidases_S8_14 Pepti 100.0 5.5E-47 1.2E-51 392.6 22.6 290 154-630 1-309 (311)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 1.7E-45 3.7E-50 373.1 19.6 244 151-635 4-253 (255)
5 PTZ00262 subtilisin-like prote 100.0 2.9E-45 6.4E-50 398.2 20.6 164 151-350 312-477 (639)
6 cd07483 Peptidases_S8_Subtilis 100.0 7.4E-43 1.6E-47 361.0 21.0 173 155-349 1-184 (291)
7 cd07476 Peptidases_S8_thiazoli 100.0 3.3E-42 7.1E-47 350.8 20.1 244 143-633 2-250 (267)
8 cd05562 Peptidases_S53_like Pe 100.0 3.6E-42 7.8E-47 351.5 18.2 251 151-636 1-254 (275)
9 cd07475 Peptidases_S8_C5a_Pept 100.0 9.2E-42 2E-46 362.7 21.8 184 143-350 2-190 (346)
10 cd07493 Peptidases_S8_9 Peptid 100.0 1.9E-41 4.2E-46 345.8 20.6 246 156-631 1-259 (261)
11 cd07481 Peptidases_S8_Bacillop 100.0 2.2E-41 4.8E-46 345.9 20.8 244 154-630 1-261 (264)
12 cd04857 Peptidases_S8_Tripepti 100.0 5E-41 1.1E-45 354.6 23.2 220 232-634 182-411 (412)
13 cd07489 Peptidases_S8_5 Peptid 100.0 3.5E-41 7.7E-46 352.9 21.9 260 142-634 4-267 (312)
14 cd04847 Peptidases_S8_Subtilis 100.0 8.1E-42 1.8E-46 354.1 16.3 260 158-631 2-289 (291)
15 cd07487 Peptidases_S8_1 Peptid 100.0 8.2E-41 1.8E-45 342.0 21.8 256 154-631 1-262 (264)
16 cd07474 Peptidases_S8_subtilis 100.0 4.9E-40 1.1E-44 341.9 23.1 267 154-635 1-272 (295)
17 cd05561 Peptidases_S8_4 Peptid 100.0 1.7E-40 3.6E-45 333.6 18.8 225 157-637 1-229 (239)
18 cd07485 Peptidases_S8_Fervidol 100.0 7E-40 1.5E-44 336.5 21.8 262 143-631 2-273 (273)
19 KOG1153 Subtilisin-related pro 100.0 3.4E-40 7.4E-45 334.7 17.8 259 19-366 77-375 (501)
20 cd07490 Peptidases_S8_6 Peptid 100.0 2.6E-39 5.6E-44 329.1 20.2 251 156-631 1-252 (254)
21 cd07496 Peptidases_S8_13 Pepti 100.0 1.7E-39 3.6E-44 335.8 19.1 268 156-630 1-284 (285)
22 cd04842 Peptidases_S8_Kp43_pro 100.0 5.8E-39 1.3E-43 333.4 20.8 276 150-631 2-291 (293)
23 cd07484 Peptidases_S8_Thermita 100.0 1.4E-38 3E-43 324.8 20.6 241 142-636 20-260 (260)
24 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.2E-38 2.6E-43 324.3 19.6 227 151-632 21-253 (255)
25 cd07498 Peptidases_S8_15 Pepti 100.0 7.7E-39 1.7E-43 323.2 18.0 159 157-366 1-160 (242)
26 cd07494 Peptidases_S8_10 Pepti 100.0 2.9E-38 6.4E-43 326.7 20.6 159 142-369 12-175 (298)
27 cd07473 Peptidases_S8_Subtilis 100.0 7.3E-38 1.6E-42 319.3 20.4 160 155-349 2-161 (259)
28 cd07491 Peptidases_S8_7 Peptid 100.0 3.5E-38 7.6E-43 317.3 16.2 158 154-365 2-168 (247)
29 cd07477 Peptidases_S8_Subtilis 100.0 1.2E-37 2.7E-42 311.7 19.3 227 156-631 1-229 (229)
30 cd07480 Peptidases_S8_12 Pepti 100.0 1.4E-37 3.1E-42 323.1 19.0 148 150-349 3-171 (297)
31 cd04843 Peptidases_S8_11 Pepti 100.0 1.4E-37 3.1E-42 317.9 18.4 145 142-349 6-155 (277)
32 cd07482 Peptidases_S8_Lantibio 100.0 3.1E-37 6.8E-42 320.6 17.9 156 156-350 1-159 (294)
33 cd07492 Peptidases_S8_8 Peptid 100.0 6.1E-36 1.3E-40 298.0 18.1 148 156-364 1-148 (222)
34 cd04059 Peptidases_S8_Protein_ 100.0 5.4E-35 1.2E-39 304.2 15.8 174 142-368 30-214 (297)
35 cd04848 Peptidases_S8_Autotran 100.0 1.6E-34 3.5E-39 295.6 18.8 152 153-350 1-160 (267)
36 PF00082 Peptidase_S8: Subtila 100.0 1.7E-34 3.7E-39 298.1 14.5 253 158-636 1-259 (282)
37 KOG4266 Subtilisin kexin isozy 100.0 2.8E-31 6.1E-36 276.6 14.8 140 150-351 196-335 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 7.9E-31 1.7E-35 263.1 12.1 118 231-367 33-159 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 2.4E-28 5.2E-33 244.9 19.6 123 230-367 39-166 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 1.4E-27 3.1E-32 259.4 18.1 221 234-636 309-538 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 4.4E-21 9.6E-26 213.2 17.5 148 151-350 138-290 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.4E-18 5.2E-23 171.4 16.2 154 142-348 152-315 (629)
43 cd04056 Peptidases_S53 Peptida 99.6 3.1E-15 6.7E-20 159.4 10.5 103 262-370 82-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.9E-11 4.1E-16 112.8 11.1 118 396-551 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 5.3E-10 1.2E-14 100.8 12.3 117 376-508 2-119 (126)
46 cd02129 PA_hSPPL_like PA_hSPPL 99.0 4.3E-09 9.3E-14 92.6 10.0 84 417-508 29-115 (120)
47 cd02127 PA_hPAP21_like PA_hPAP 98.8 1.5E-08 3.2E-13 89.8 8.7 82 418-508 21-109 (118)
48 PF05922 Inhibitor_I9: Peptida 98.8 3.6E-08 7.7E-13 81.6 9.8 47 83-129 36-82 (82)
49 cd04816 PA_SaNapH_like PA_SaNa 98.8 4E-08 8.6E-13 88.1 9.9 83 418-508 29-115 (122)
50 PF02225 PA: PA domain; Inter 98.7 2.6E-08 5.7E-13 85.9 7.8 74 425-505 25-101 (101)
51 cd02122 PA_GRAIL_like PA _GRAI 98.7 4.7E-08 1E-12 89.0 9.4 86 416-508 42-131 (138)
52 cd02130 PA_ScAPY_like PA_ScAPY 98.7 1.1E-07 2.4E-12 85.1 11.6 81 419-508 32-115 (122)
53 cd04817 PA_VapT_like PA_VapT_l 98.7 3.1E-08 6.8E-13 89.7 7.8 75 427-508 50-134 (139)
54 cd04813 PA_1 PA_1: Protease-as 98.7 4.2E-08 9E-13 86.7 8.4 81 417-507 26-111 (117)
55 cd02124 PA_PoS1_like PA_PoS1_l 98.7 2.2E-07 4.8E-12 83.6 12.6 84 416-508 39-122 (129)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.7 8.7E-08 1.9E-12 86.1 8.5 82 418-508 27-119 (126)
57 cd02132 PA_GO-like PA_GO-like: 98.6 2.1E-07 4.6E-12 85.1 10.6 80 418-508 48-132 (139)
58 cd02125 PA_VSR PA_VSR: Proteas 98.6 1.2E-07 2.7E-12 85.0 8.8 84 418-508 22-120 (127)
59 cd02123 PA_C_RZF_like PA_C-RZF 98.6 1.3E-07 2.8E-12 87.9 8.7 84 418-508 50-140 (153)
60 cd00538 PA PA: Protease-associ 98.5 3.1E-07 6.7E-12 82.6 8.2 83 418-508 30-119 (126)
61 cd04818 PA_subtilisin_1 PA_sub 98.5 4.3E-07 9.3E-12 80.9 8.6 83 417-508 26-111 (118)
62 cd04819 PA_2 PA_2: Protease-as 98.4 3.8E-06 8.2E-11 75.7 11.2 75 427-508 38-120 (127)
63 cd04815 PA_M28_2 PA_M28_2: Pro 97.6 0.00019 4.1E-09 65.3 7.5 74 428-508 34-127 (134)
64 cd02128 PA_TfR PA_TfR: Proteas 97.3 0.00047 1E-08 65.4 6.6 73 429-508 51-156 (183)
65 KOG3525 Subtilisin-like propro 97.3 0.00047 1E-08 74.7 7.0 162 141-352 23-190 (431)
66 cd04814 PA_M28_1 PA_M28_1: Pro 97.2 0.0014 3E-08 59.8 7.5 71 396-475 19-101 (142)
67 cd04820 PA_M28_1_1 PA_M28_1_1: 97.0 0.003 6.6E-08 57.2 8.3 70 396-474 21-96 (137)
68 cd04822 PA_M28_1_3 PA_M28_1_3: 97.0 0.0039 8.5E-08 57.5 8.6 71 396-475 19-101 (151)
69 KOG2442 Uncharacterized conser 96.4 0.0063 1.4E-07 64.6 6.6 70 429-505 91-165 (541)
70 KOG4628 Predicted E3 ubiquitin 96.3 0.011 2.4E-07 61.3 7.3 82 418-506 62-148 (348)
71 cd02131 PA_hNAALADL2_like PA_h 96.1 0.0066 1.4E-07 55.3 4.1 40 430-475 37-76 (153)
72 COG4934 Predicted protease [Po 96.0 0.019 4.1E-07 67.8 8.3 99 263-365 288-395 (1174)
73 cd02121 PA_GCPII_like PA_GCPII 95.6 0.016 3.4E-07 57.0 4.8 41 429-475 67-107 (220)
74 KOG3920 Uncharacterized conser 94.9 0.015 3.3E-07 52.4 2.0 83 417-508 73-164 (193)
75 cd04821 PA_M28_1_2 PA_M28_1_2: 89.4 0.57 1.2E-05 43.6 4.8 49 426-474 42-103 (157)
76 PF02845 CUE: CUE domain; Int 81.4 0.95 2.1E-05 31.9 1.6 25 612-636 8-32 (42)
77 PF08260 Kinin: Insect kinin p 73.0 1.6 3.4E-05 19.3 0.4 6 543-548 3-8 (8)
78 smart00546 CUE Domain that may 69.3 3.4 7.3E-05 29.2 1.8 28 610-637 7-34 (43)
79 COG3784 Uncharacterized protei 47.3 56 0.0012 27.6 5.4 13 20-32 37-49 (109)
80 COG4934 Predicted protease [Po 39.5 17 0.00036 44.1 1.8 47 560-617 449-498 (1174)
81 PF08821 CGGC: CGGC domain; I 32.0 2.8E+02 0.0061 24.0 7.8 73 263-341 30-104 (107)
82 PF04255 DUF433: Protein of un 31.5 29 0.00062 26.1 1.4 17 613-629 38-54 (56)
83 PF10281 Ish1: Putative stress 25.5 66 0.0014 22.0 2.3 21 618-638 3-23 (38)
84 KOG2018 Predicted dinucleotide 24.6 1.6E+02 0.0035 30.6 5.7 55 290-345 180-246 (430)
85 COG5510 Predicted small secret 23.2 86 0.0019 22.3 2.4 19 1-19 2-20 (44)
86 COG1879 RbsB ABC-type sugar tr 21.5 3E+02 0.0066 28.3 7.5 50 283-343 74-123 (322)
No 1
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=5.9e-50 Score=435.22 Aligned_cols=416 Identities=20% Similarity=0.201 Sum_probs=259.0
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCC-CCCCccccCCCCCCCCCCCceEeeecchh-hHhhhccCCCCCCCC
Q 006605 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVP-KYRGKCEVDPDTKRSFCNGKIIGAQHFAE-AAIAARAFNPAVDFA 229 (639)
Q Consensus 152 ~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki~~~~~~~~-~~~~~~~~~~~~~~~ 229 (639)
++|+||+|||||||||+.||+|+.. ++.+++. .|++........ ....++..+.+ ..........+.+..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~--dg~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~ 72 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNE--DGTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIV 72 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccC--CCCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccC
Confidence 4899999999999999999999976 3445555 898876643221 12222222222 111111112223334
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCC----------CCHHHHHHHHHHHHhC
Q 006605 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG----------GFVADVVAAIDQAVHD 299 (639)
Q Consensus 230 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~----------~~~s~i~~ai~~a~~~ 299 (639)
...|..||||||||||||+..++ ..+.||||+|+|+++|++...+. +..+++++|++|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 45789999999999999985431 34789999999999999988754 5788999999999873
Q ss_pred -----CCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcccCCCccEEEceeecCccee
Q 006605 300 -----GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYK 373 (639)
Q Consensus 300 -----g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~ 373 (639)
.+.|||||||...+++++ .+.++++++.+.++ |++||+||||+|....++..... . ....-.
T Consensus 145 a~~~~~p~VInlSlG~~~g~~~g----~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~-----~~~~~~ 212 (455)
T cd07478 145 ALELNKPLVINISLGTNFGSHDG----TSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---P-----NGETKT 212 (455)
T ss_pred HHHhCCCeEEEEccCcCCCCCCC----ccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---c-----CCceEE
Confidence 578999999998777665 67889999988876 99999999999986554432100 0 000011
Q ss_pred eeeEeCCCeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhh
Q 006605 374 NHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIK 453 (639)
Q Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~ 453 (639)
-.+.++.++......++...+......++.+........ ....... ..........++.+..+.....+|...+.
T Consensus 213 ie~~v~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i--~~~~~~~---~~~~~~~~~t~i~v~y~~~~~~~g~~~i~ 287 (455)
T cd07478 213 VELNVGEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRI--NPGIGGS---ESYKFVFEGTTVYVYYYLPEPYTGDQLIF 287 (455)
T ss_pred EEEEECCCCcceEEEEecCCCCEEEEEEECCCCCccCcc--CcCCCcc---eeEEEEECCeEEEEEEcCCCCCCCCeEEE
Confidence 122333333222223333333323333333221111000 0000000 00001112233444434333344544444
Q ss_pred hhHHHHHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeeccee---EEEccCc
Q 006605 454 KVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGT---GTIGDGL 530 (639)
Q Consensus 454 ~k~~~~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~ 530 (639)
.++.++. .|.|.+.++......+. .+.|+|.-.+.. .+..+| . .+|..++..+... +++.
T Consensus 288 i~~~~~~-~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~-~~t~f~-~-------~~~~~tit~Pa~~~~vitVg--- 350 (455)
T cd07478 288 IRFKNIK-PGIWKIRLTGVSITDGR----FDAWLPSRGLLS-ENTRFL-E-------PDPYTTLTIPGTARSVITVG--- 350 (455)
T ss_pred EEccCCC-ccceEEEEEeccCCCce----EEEEecCcCcCC-CCCEee-c-------CCCCceEecCCCCCCcEEEE---
Confidence 4444443 48888888876443222 345677665543 222221 1 2233333332221 1111
Q ss_pred ccccCCCccccccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccce
Q 006605 531 MPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSC 610 (639)
Q Consensus 531 ~~~~~~~~~~ia~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~a 610 (639)
.+....+.++.||||||+.+ +++||||+|||++|+|+++ ++.|..++|||||||||||++|
T Consensus 351 --a~~~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap~vaG~aA 411 (455)
T cd07478 351 --AYNQNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAAIVAGACA 411 (455)
T ss_pred --EEeCCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHHHHHHHHH
Confidence 12233457999999999985 9999999999999999987 5689999999999999999999
Q ss_pred eccccC------CCCCHHHHHHHHhhcccccc
Q 006605 611 SCEAEA------PLLEPSCYKISIDDHNNEVG 636 (639)
Q Consensus 611 l~~~~~------p~~sp~~i~~~~~~~~~~~~ 636 (639)
|+.|.+ |.|+|+|||.+|...-+..+
T Consensus 412 Ll~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~ 443 (455)
T cd07478 412 LLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP 443 (455)
T ss_pred HHHHhchhccCCCCCCHHHHHHHHHHhCccCC
Confidence 998865 56799999999998776554
No 2
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-49 Score=410.66 Aligned_cols=232 Identities=47% Similarity=0.777 Sum_probs=186.2
Q ss_pred ecccCCCCCcccCCCCCCCCC-CCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 006605 126 VRRLTTHTPEFLGLPTGVWPT-GGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNG 204 (639)
Q Consensus 126 ~~~~~~~~~~~~g~~~~~w~~-~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 204 (639)
++++.++++.+++++ ..|.. .+..+++|+||+|||||||||++||+|.+....+ ....|.+.|..+..+....+++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGP--YPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCC--CCCCCCCcccCCCCcCccCcCC
Confidence 357788889999975 67775 5556899999999999999999999999764322 2227999998888877778999
Q ss_pred ceEeeecchhhHhhhccCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCC
Q 006605 205 KIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG 284 (639)
Q Consensus 205 ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~ 284 (639)
|+++.++|.++.......+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.++.+
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 99999999887544333334455677889999999999999998765544445555668999999999999999986678
Q ss_pred CHHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEEc
Q 006605 285 FVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVA 364 (639)
Q Consensus 285 ~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVg 364 (639)
..+++++|++||++++++|||||||.... ....+.+..++..+.++|++||+||||+|+.....++..|++|+||
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP-----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 89999999999999999999999998653 1245688888999999999999999999966555555555555555
Q ss_pred e
Q 006605 365 A 365 (639)
Q Consensus 365 A 365 (639)
|
T Consensus 233 a 233 (307)
T cd04852 233 A 233 (307)
T ss_pred e
Confidence 4
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-47 Score=392.63 Aligned_cols=290 Identities=23% Similarity=0.194 Sum_probs=190.3
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCC
Q 006605 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (639)
Q Consensus 154 G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (639)
|+||+|||||||||.+||||.++.. + .|...++ ....+..+.++..+ ....+.|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~--~----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~D 54 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN--F----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMYD 54 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC--C----CcccccC---------cCCCccCCcCCCCC-----------ccCCCCC
Confidence 8999999999999999999986521 0 0100000 00112222222211 1134678
Q ss_pred CCCCchhhhhhhccCCCCCcccccc-CCCceeeccCCCeEEEEEeeecCCCCCHHHHHH-------HHHHH--HhCCCcE
Q 006605 234 GDGHGSHTAAIAAGNNGIPVRMHGH-EFGRASGMAPRARIAVYKALYRLFGGFVADVVA-------AIDQA--VHDGVDI 303 (639)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~-------ai~~a--~~~g~dV 303 (639)
.+||||||||||||......+..++ ....+.||||+|+|+++|++...+......+.. +++|+ .+++++|
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V 134 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDV 134 (311)
T ss_pred ccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceE
Confidence 9999999999999975322111110 123478999999999999997643333332332 34444 3689999
Q ss_pred EEeccCCCCCCCCCCcCcccHHHHHHHHH-HhCCcEEEEecCCCCCCCC--CcccCCCccEEEceeecCcceeeeeEeCC
Q 006605 304 LSLSVGPNSPPATTKTTFLNPFDVTLLAA-VKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGN 380 (639)
Q Consensus 304 In~SlG~~~~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~g~ 380 (639)
||||||.............+..+.+++.+ .++|+++|+||||+|+... ..|..++++|+|||++..+..+.+
T Consensus 135 IN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~----- 209 (311)
T cd07497 135 ISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY----- 209 (311)
T ss_pred EEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh-----
Confidence 99999975432111011122344444443 3799999999999998643 455677999999997532100000
Q ss_pred CeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHH
Q 006605 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (639)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~ 460 (639)
. . +
T Consensus 210 -------------------~----------------------------------------~------~------------ 212 (311)
T cd07497 210 -------------------L----------------------------------------F------G------------ 212 (311)
T ss_pred -------------------h----------------------------------------h------c------------
Confidence 0 0 0
Q ss_pred hcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccc
Q 006605 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (639)
Q Consensus 461 ~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 540 (639)
.. ....+.
T Consensus 213 --------------------------------~~----------------------------------------~~~~~~ 220 (311)
T cd07497 213 --------------------------------YL----------------------------------------PGGSGD 220 (311)
T ss_pred --------------------------------cc----------------------------------------cCCCCC
Confidence 00 000124
Q ss_pred cccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCC---
Q 006605 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAP--- 617 (639)
Q Consensus 541 ia~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p--- 617 (639)
++.||||||+.+ +++||||+|||++|+|+.+.............|..|+|||||||||||++||+++++|
T Consensus 221 ~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~ 293 (311)
T cd07497 221 VVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKE 293 (311)
T ss_pred ccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhc
Confidence 689999999985 9999999999999999987543211122245799999999999999999999999886
Q ss_pred ---CCCHHHHHHHHhh
Q 006605 618 ---LLEPSCYKISIDD 630 (639)
Q Consensus 618 ---~~sp~~i~~~~~~ 630 (639)
.|+|++||.+|++
T Consensus 294 ~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 294 GVGEYDPFLVRTILMS 309 (311)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 6999999999975
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.7e-45 Score=373.12 Aligned_cols=244 Identities=20% Similarity=0.277 Sum_probs=186.6
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCC
Q 006605 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (639)
Q Consensus 151 ~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (639)
+++|+||+|||||||||.+||+|.+.. ...+|.+ ...
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~------------------------------~~~~~~~-------------~~~ 40 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVK------------------------------ERTNWTN-------------EKT 40 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhccc------------------------------cccccCC-------------CCC
Confidence 899999999999999999999998531 0011111 123
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCC
Q 006605 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (639)
Q Consensus 231 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~ 310 (639)
..|..+|||||||||+|+.. ...||||+|+|+.+|++.+++.+..++++++++|+++++++|||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999742 2589999999999999998766778889999999999999999999997
Q ss_pred CCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cccCCCccEEEceeecCcceeeeeEeCCCeEEEeec
Q 006605 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--LVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (639)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~ 388 (639)
.. +...++.+++.++.++|++||+||||+|+...+ .|...++||+|||++.+
T Consensus 110 ~~-------~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------- 163 (255)
T cd07479 110 PD-------FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------- 163 (255)
T ss_pred CC-------CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------
Confidence 42 224567778888999999999999999974322 23333444444443211
Q ss_pred cCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEE
Q 006605 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (639)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi 468 (639)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCC
Q 006605 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (639)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~G 548 (639)
+.++.||+||
T Consensus 164 ----------------------------------------------------------------------~~~~~~S~~g 173 (255)
T cd07479 164 ----------------------------------------------------------------------DNIARFSSRG 173 (255)
T ss_pred ----------------------------------------------------------------------CccccccCCC
Confidence 1235566666
Q ss_pred CCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCC----CCCHHHH
Q 006605 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAP----LLEPSCY 624 (639)
Q Consensus 549 Pt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p----~~sp~~i 624 (639)
|+.. .+-...+++||||+|||.+|+++.+ ++.|..++|||||||||||++||+++++| .|+|.||
T Consensus 174 ~~~~-~~p~~~g~~~~di~apG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~v 242 (255)
T cd07479 174 MTTW-ELPGGYGRVKPDIVTYGSGVYGSKL----------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASM 242 (255)
T ss_pred CCcc-cccCCCCCcCccEEecCCCeecccc----------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHH
Confidence 4320 0000137899999999999998864 45788999999999999999999999998 7999999
Q ss_pred HHHHhhccccc
Q 006605 625 KISIDDHNNEV 635 (639)
Q Consensus 625 ~~~~~~~~~~~ 635 (639)
|.+|.+.-.++
T Consensus 243 k~~L~~sA~~~ 253 (255)
T cd07479 243 KQALIESATRL 253 (255)
T ss_pred HHHHHhhcccC
Confidence 99999876543
No 5
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.9e-45 Score=398.18 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=123.6
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCce--EeeecchhhHhhhccCCCCCCC
Q 006605 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKI--IGAQHFAEAAIAARAFNPAVDF 228 (639)
Q Consensus 151 ~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki--~~~~~~~~~~~~~~~~~~~~~~ 228 (639)
+.+|+||+|||||||||++||||.++...+...+ . |..+.....|+.+ +.+++|+++ .
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el---~-----GrdgiDdD~nG~vdd~~G~nfVd~------------~ 371 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKEL---H-----GRKGIDDDNNGNVDDEYGANFVNN------------D 371 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhcccccccc---c-----CccccccccCCcccccccccccCC------------C
Confidence 4689999999999999999999997621100000 0 0000000111111 234455432 3
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEecc
Q 006605 229 ASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSV 308 (639)
Q Consensus 229 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~Sl 308 (639)
..|.|.+||||||||||||...++ .++.||||+|+|+++|+++..+.+..+++++||+||+++|++||||||
T Consensus 372 ~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 372 GGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 467899999999999999975432 247899999999999999988788999999999999999999999999
Q ss_pred CCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 006605 309 GPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350 (639)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 350 (639)
|+.. +...+..|+++|.++|++||+||||+|+..
T Consensus 444 G~~~--------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~ 477 (639)
T PTZ00262 444 SFDE--------YSGIFNESVKYLEEKGILFVVSASNCSHTK 477 (639)
T ss_pred ccCC--------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCc
Confidence 9742 345789999999999999999999998753
No 6
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=7.4e-43 Score=360.97 Aligned_cols=173 Identities=21% Similarity=0.235 Sum_probs=120.0
Q ss_pred CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhh-----cc------CC
Q 006605 155 EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAA-----RA------FN 223 (639)
Q Consensus 155 ~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~-----~~------~~ 223 (639)
++|+|||||||||++||+|+++.+.+...++ ..+....+.+|.. -+.+++|....... .. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~-~~~~d~d~ng~~d------d~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP-GNGIDDDNNGYID------DVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC-CCCccCCCCCccc------cccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999987332221111 1222222222221 13445554311000 00 00
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcE
Q 006605 224 PAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDI 303 (639)
Q Consensus 224 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dV 303 (639)
...+...|.+..+|||||||||+|...++ .++.||||+|+|+.+|++.. +....+++++||+||+++|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcE
Confidence 11123345578999999999999975432 23789999999999999864 4567789999999999999999
Q ss_pred EEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCC
Q 006605 304 LSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF 349 (639)
Q Consensus 304 In~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 349 (639)
||||||..... ....+..+++++.++|+++|+||||+|.+
T Consensus 145 iN~S~G~~~~~------~~~~~~~ai~~a~~~gilvV~AAGN~g~~ 184 (291)
T cd07483 145 INMSFGKSFSP------NKEWVDDAIKYAESKGVLIVHAAGNDGLD 184 (291)
T ss_pred EEeCCCCCCCC------ccHHHHHHHHHHHhCCeEEEEeCCCCCCC
Confidence 99999964321 23568889999999999999999999864
No 7
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3.3e-42 Score=350.82 Aligned_cols=244 Identities=20% Similarity=0.227 Sum_probs=190.8
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccC
Q 006605 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAF 222 (639)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~ 222 (639)
+|.. +++|+||+|||||+|||.+||+|.+.....+ ..+..
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~~~~~----------------------------~~~~~-------- 41 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGANLTPL----------------------------FTYAA-------- 41 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCccccc----------------------------cCccc--------
Confidence 4655 8999999999999999999999997521100 00000
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCC-CHHHHHHHHHHHHhCCC
Q 006605 223 NPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG-FVADVVAAIDQAVHDGV 301 (639)
Q Consensus 223 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~-~~s~i~~ai~~a~~~g~ 301 (639)
......|..+|||||||+|+|+... .+.||||+|+|+.+|++...+.. +..++++|++||+++|+
T Consensus 42 ----~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 ----AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGA 107 (267)
T ss_pred ----cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCC
Confidence 1123456789999999999997431 36899999999999999876554 47889999999999999
Q ss_pred cEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEEceeecCcceeeeeEeCCC
Q 006605 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (639)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~g~~ 381 (639)
+|||||||..... ......+.++++++.++|+++|+||||+|.....+|...++||+|||++.+
T Consensus 108 ~VIN~S~G~~~~~----~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 171 (267)
T cd07476 108 HIINISGGRLTQT----GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------ 171 (267)
T ss_pred CEEEecCCcCCCC----CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------
Confidence 9999999975422 224567899999999999999999999997655555555666666653110
Q ss_pred eEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHh
Q 006605 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (639)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~ 461 (639)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCcccc
Q 006605 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (639)
Q Consensus 462 ~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 541 (639)
+..
T Consensus 172 -----------------------------------------------------------------------------~~~ 174 (267)
T cd07476 172 -----------------------------------------------------------------------------GLP 174 (267)
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 011
Q ss_pred ccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCC---
Q 006605 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPL--- 618 (639)
Q Consensus 542 a~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~--- 618 (639)
+.||+|||.. .||||+|||.+|+++.+ ++.|..++|||||||||||++||+++.+|.
T Consensus 175 ~~~s~~g~~~----------~~~~l~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~ 234 (267)
T cd07476 175 LKFSNWGADY----------RKKGILAPGENILGAAL----------GGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGA 234 (267)
T ss_pred eeecCCCCCC----------CCceEEecCCCceeecC----------CCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCC
Confidence 4577778753 38999999999999986 568999999999999999999999999887
Q ss_pred -CCHHHHHHHHhhccc
Q 006605 619 -LEPSCYKISIDDHNN 633 (639)
Q Consensus 619 -~sp~~i~~~~~~~~~ 633 (639)
|+|+|||.+|.+=-.
T Consensus 235 ~~~~~~vk~~L~~tA~ 250 (267)
T cd07476 235 PPDPLAVRRALLETAT 250 (267)
T ss_pred CCCHHHHHHHHHHhCc
Confidence 999999999986443
No 8
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.6e-42 Score=351.46 Aligned_cols=251 Identities=19% Similarity=0.146 Sum_probs=185.1
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCC
Q 006605 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (639)
Q Consensus 151 ~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (639)
+++|+||+|||||||||.+||++.+... .++.+...+.. ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~-------------------------~~l~~~~~~~~------------~~~~ 43 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS-------------------------GDLPGNVNVLG------------DLDG 43 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC-------------------------CCCCcceeecc------------ccCC
Confidence 4799999999999999999885432200 00111011100 0123
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCC
Q 006605 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (639)
Q Consensus 231 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~ 310 (639)
..|..+|||||||||+ ||||+|+|+.+|+.. ..+++++||+|++++|++|||||||.
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccc
Confidence 4578899999999973 689999999987643 37889999999999999999999998
Q ss_pred CCCCCCCCcCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-CcccCCCccEEEceeecCcceeeeeEeCCCeEEEeec
Q 006605 311 NSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (639)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~ 388 (639)
...+. +....+.++++++.++ |++||+||||+|.... ..|+..++||+|||++.++....++
T Consensus 101 ~~~~~----~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------ 164 (275)
T cd05562 101 LNEPF----FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------ 164 (275)
T ss_pred cCCCc----ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------
Confidence 54321 1235788899999987 9999999999998643 3466789999999976443210000
Q ss_pred cCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEE
Q 006605 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (639)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi 468 (639)
|. + .
T Consensus 165 --------------------------------~~-------------------------~---------------~---- 168 (275)
T cd05562 165 --------------------------------DP-------------------------A---------------P---- 168 (275)
T ss_pred --------------------------------cc-------------------------c---------------c----
Confidence 00 0 0
Q ss_pred EeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCC
Q 006605 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (639)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~G 548 (639)
. .. ....+.||+||
T Consensus 169 ---~--------------------~~-------------------------------------------~s~~~~~~~~~ 182 (275)
T cd05562 169 ---G--------------------GT-------------------------------------------PSSFDPVGIRL 182 (275)
T ss_pred ---C--------------------CC-------------------------------------------cccccCCcccC
Confidence 0 00 00225689999
Q ss_pred CCCCCCccCCCCcccccccCCCC-ceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHH
Q 006605 549 PNIKDFSFQDADLLKPDILAPGS-LIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKIS 627 (639)
Q Consensus 549 Pt~~~~~~~~~~~lKPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~ 627 (639)
|+.+ +++||||+|||+ +|.+.+. ++.|..++|||||||||||++||+++++|+|+|.|||..
T Consensus 183 p~~~-------~~~~~di~Apgg~~~~~~~~----------~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~ 245 (275)
T cd05562 183 PTPE-------VRQKPDVTAPDGVNGTVDGD----------GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDA 245 (275)
T ss_pred cCCC-------CCcCCeEEcCCcccccCCCc----------CCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9875 899999999975 4455443 568999999999999999999999999999999999999
Q ss_pred Hhhcccccc
Q 006605 628 IDDHNNEVG 636 (639)
Q Consensus 628 ~~~~~~~~~ 636 (639)
|...-.+++
T Consensus 246 L~~tA~~~~ 254 (275)
T cd05562 246 LRSTALDMG 254 (275)
T ss_pred HHHhCcccC
Confidence 998776554
No 9
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=9.2e-42 Score=362.74 Aligned_cols=184 Identities=28% Similarity=0.375 Sum_probs=135.0
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCC---CCCCCccccCCCCCCCCCCCceEeeecchhhHhhh
Q 006605 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPV---PKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAA 219 (639)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~ 219 (639)
+|++. .++|+||+|||||||||++||+|.+......... ..+...+ ......+.+.+++.+++|.+...
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-- 73 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKA---GIGYGKYYNEKVPFAYNYADNND-- 73 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcc---cCCCCcccccCCCeeEcCCCCCC--
Confidence 56662 3489999999999999999999997733211000 0011111 11122355678888888876421
Q ss_pred ccCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeec--CCCCCHHHHHHHHHHHH
Q 006605 220 RAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYR--LFGGFVADVVAAIDQAV 297 (639)
Q Consensus 220 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~--~~~~~~s~i~~ai~~a~ 297 (639)
+.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. ........+++|+++++
T Consensus 74 -------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~ 141 (346)
T cd07475 74 -------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAV 141 (346)
T ss_pred -------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHH
Confidence 111144788999999999999864311 1234799999999999999984 45577888999999999
Q ss_pred hCCCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 006605 298 HDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350 (639)
Q Consensus 298 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 350 (639)
+.+++|||||||...... .....+..+++++.++|++||+||||+|...
T Consensus 142 ~~g~~Vin~S~G~~~~~~----~~~~~~~~~~~~a~~~giliv~aAGN~g~~~ 190 (346)
T cd07475 142 KLGADVINMSLGSTAGFV----DLDDPEQQAIKRAREAGVVVVVAAGNDGNSG 190 (346)
T ss_pred HcCCCEEEECCCcCCCCC----CCCCHHHHHHHHHhhCCeEEEEeCCCCCccC
Confidence 999999999999865432 3457888999999999999999999998653
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-41 Score=345.85 Aligned_cols=246 Identities=24% Similarity=0.245 Sum_probs=185.8
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCC-CCCC
Q 006605 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS-PLDG 234 (639)
Q Consensus 156 gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ 234 (639)
||+|||||||||++||+|..... ..+.++.+.++|.++ ... ..|.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~----------------------~~~~~i~~~~~~~~~------------~~~~~~~~ 46 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL----------------------FKNLRILGEYDFVDN------------SNNTNYTD 46 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc----------------------ccCCceeeeecCccC------------CCCCCCCC
Confidence 79999999999999999953210 112467777777654 122 3678
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 006605 235 DGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSVGPNS 312 (639)
Q Consensus 235 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~s~i~~ai~~a~~~g~dVIn~SlG~~~ 312 (639)
++|||||||+|+|... +.+.||||+|+|+.+|+...... .....+++|++|+.+++++|||||||...
T Consensus 47 ~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 47 DDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 8999999999999743 23689999999999998764322 34567899999999999999999999764
Q ss_pred CCCCC-------CcCcccHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcccCCCccEEEceeecCcceeeeeEeCCCe
Q 006605 313 PPATT-------KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP---KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGK 382 (639)
Q Consensus 313 ~~~~~-------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~ 382 (639)
..... .......+.++++.+.++|+++|+||||+|... ..+|...+++|+|||++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~--------------- 181 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD--------------- 181 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec---------------
Confidence 32110 011224678899999999999999999998652 11222223333332210
Q ss_pred EEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhc
Q 006605 383 ILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSL 462 (639)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~ 462 (639)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccc
Q 006605 463 GAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVA 542 (639)
Q Consensus 463 Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia 542 (639)
. .+.++
T Consensus 182 -------------------------------~-------------------------------------------~~~~~ 187 (261)
T cd07493 182 -------------------------------A-------------------------------------------NGNKA 187 (261)
T ss_pred -------------------------------c-------------------------------------------CCCCC
Confidence 0 01336
Q ss_pred cccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHH
Q 006605 543 LFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPS 622 (639)
Q Consensus 543 ~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~ 622 (639)
.||++||+.+ +++||||+|||.+|++... ++.|..++|||||||+|||++||+++++|.|+|.
T Consensus 188 ~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~ 250 (261)
T cd07493 188 SFSSIGPTAD-------GRLKPDVMALGTGIYVING----------DGNITYANGTSFSCPLIAGLIACLWQAHPNWTNL 250 (261)
T ss_pred ccCCcCCCCC-------CCcCCceEecCCCeEEEcC----------CCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 7999999884 8999999999999998643 5679999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 006605 623 CYKISIDDH 631 (639)
Q Consensus 623 ~i~~~~~~~ 631 (639)
|||.+|..-
T Consensus 251 ~i~~~l~~t 259 (261)
T cd07493 251 QIKEAILKS 259 (261)
T ss_pred HHHHHHHHh
Confidence 999999753
No 11
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.2e-41 Score=345.91 Aligned_cols=244 Identities=28% Similarity=0.327 Sum_probs=183.8
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCC
Q 006605 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (639)
Q Consensus 154 G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (639)
|+||+|||||||||++||+|.++ |.+... ..+...+.+. +.......|.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~----------~~~~~~-----------~~~~~~~~~~---------d~~~~~~~~~d 50 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK----------YRGWGG-----------GSADHDYNWF---------DPVGNTPLPYD 50 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc----------ccccCC-----------CCcccccccc---------cCCCCCCCCCC
Confidence 89999999999999999999875 111000 0000000110 11112345678
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHh------------CCC
Q 006605 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH------------DGV 301 (639)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~------------~g~ 301 (639)
..+|||||||||+|.... +...||||+|+|+.+|+++... +...+++++++|+++ .++
T Consensus 51 ~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (264)
T cd07481 51 DNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLAP 120 (264)
T ss_pred CCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccCC
Confidence 899999999999997432 1248999999999999998764 788899999999975 789
Q ss_pred cEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCccEEEceeecCcceeeeeEe
Q 006605 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT---LVSYSPWITTVAAAIDDRRYKNHLNL 378 (639)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (639)
+|||||||.... ....+..+++.+.++|++||+||||++..... +|+..+++|+|||++
T Consensus 121 ~Iin~S~G~~~~-------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~----------- 182 (264)
T cd07481 121 DVINNSWGGPSG-------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD----------- 182 (264)
T ss_pred eEEEeCCCcCCC-------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC-----------
Confidence 999999997532 24577788899999999999999999854321 111112222222100
Q ss_pred CCCeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHH
Q 006605 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (639)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~ 458 (639)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCc
Q 006605 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (639)
Q Consensus 459 ~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 538 (639)
..
T Consensus 183 ------------------------------------------------------------------------------~~ 184 (264)
T cd07481 183 ------------------------------------------------------------------------------RN 184 (264)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCC
Q 006605 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPL 618 (639)
Q Consensus 539 ~~ia~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~ 618 (639)
+.++.||++||+.. +++||||+|||.+|+++++ ++.|...+|||||||+|||++||++|++|.
T Consensus 185 ~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 247 (264)
T cd07481 185 DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSANPS 247 (264)
T ss_pred CCCccccCCCCCCC-------CCcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 13478999999974 8999999999999999986 567999999999999999999999999999
Q ss_pred --CCHHHHHHHHhh
Q 006605 619 --LEPSCYKISIDD 630 (639)
Q Consensus 619 --~sp~~i~~~~~~ 630 (639)
|++.|||.+|++
T Consensus 248 ~~l~~~~v~~~L~~ 261 (264)
T cd07481 248 LIGDVDATEAILTE 261 (264)
T ss_pred CCCCHHHHHHHHHH
Confidence 999999999975
No 12
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=5e-41 Score=354.58 Aligned_cols=220 Identities=22% Similarity=0.221 Sum_probs=163.4
Q ss_pred CCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccC
Q 006605 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSVG 309 (639)
Q Consensus 232 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~s~i~~ai~~a~~~g~dVIn~SlG 309 (639)
.|+++|||||||||||+..++ ..+.||||+|+|+.+|+++...+ ....++++|+++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 478899999999999985321 34789999999999999875432 23357999999999999999999999
Q ss_pred CCCCCCCCCcCcccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCcc--c-CCCccEEEceeecCcceeeeeEeCCCeEEE
Q 006605 310 PNSPPATTKTTFLNPFDVTLLA-AVKAGVFVAQAAGNGGPFPKTLV--S-YSPWITTVAAAIDDRRYKNHLNLGNGKILA 385 (639)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~-~~~~vitVgA~~~~~~~~~~~~~g~~~~~~ 385 (639)
....+.+ ...+.+++.+ +.++|+++|+||||+|+..+++. . ..++||+|||+......
T Consensus 254 ~~~~~~~-----~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~------------- 315 (412)
T cd04857 254 EATHWPN-----SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMM------------- 315 (412)
T ss_pred cCCCCcc-----chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcc-------------
Confidence 8654321 1234444544 45689999999999998766543 2 35789999985321100
Q ss_pred eeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCe
Q 006605 386 GIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAA 465 (639)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~ 465 (639)
. ..+.
T Consensus 316 -----------------~---------------------~~y~------------------------------------- 320 (412)
T cd04857 316 -----------------A---------------------AEYS------------------------------------- 320 (412)
T ss_pred -----------------c---------------------cccc-------------------------------------
Confidence 0 0000
Q ss_pred EEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCcccccccc
Q 006605 466 GFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFS 545 (639)
Q Consensus 466 gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FS 545 (639)
... ...+.++.||
T Consensus 321 --------------------------~~~-----------------------------------------~~~~~~~~fS 333 (412)
T cd04857 321 --------------------------LRE-----------------------------------------KLPGNQYTWS 333 (412)
T ss_pred --------------------------ccc-----------------------------------------ccCCcccccc
Confidence 000 0012358999
Q ss_pred CCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceecc----ccCCCCCH
Q 006605 546 ARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCE----AEAPLLEP 621 (639)
Q Consensus 546 S~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~----~~~p~~sp 621 (639)
||||+.+ |++||||+|||++|+|+ +.+ ....|..|+|||||||||||++||+. |.+|+|+|
T Consensus 334 SrGP~~d-------G~~~pdI~APG~~I~s~-p~~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp 398 (412)
T cd04857 334 SRGPTAD-------GALGVSISAPGGAIASV-PNW-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTP 398 (412)
T ss_pred ccCCccc-------CCcCceEEeCCCcEEEc-ccC-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 9999985 99999999999999886 222 24578999999999999999999996 56899999
Q ss_pred HHHHHHHhhcccc
Q 006605 622 SCYKISIDDHNNE 634 (639)
Q Consensus 622 ~~i~~~~~~~~~~ 634 (639)
.|||.+|++--..
T Consensus 399 ~~Vk~aL~~TA~~ 411 (412)
T cd04857 399 YSVRRALENTAKK 411 (412)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999976543
No 13
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-41 Score=352.85 Aligned_cols=260 Identities=26% Similarity=0.334 Sum_probs=198.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 142 ~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
.+|.. +++|+||+|||||||||++||+|.++...+ .++.+++++..+... .
T Consensus 4 ~~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------------~~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 4 KLHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------------CKVAGGYDFVGDDYD--G 54 (312)
T ss_pred hHHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------------ceeccccccCCcccc--c
Confidence 45665 899999999999999999999999762211 123333333322110 0
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCC
Q 006605 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (639)
Q Consensus 222 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~ 301 (639)
.+...+...+.|..+|||||||||++...+ ..+.||||+|+|+.+|++++.+......++++++|++++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 112223345677899999999999998542 24789999999999999997767788889999999999999
Q ss_pred cEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCccEEEceeecCcceeeeeEe
Q 006605 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT---LVSYSPWITTVAAAIDDRRYKNHLNL 378 (639)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (639)
+|||||||....+ ....+..+++++.++|+++|+||||+|..... .|...+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~------~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 126 DVITASLGGPSGW------SEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred CEEEeCCCcCCCC------CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 9999999986543 24678888999999999999999999854211 011111111111100
Q ss_pred CCCeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHH
Q 006605 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (639)
Q Consensus 379 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~ 458 (639)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCc
Q 006605 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (639)
Q Consensus 459 ~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 538 (639)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccC-C
Q 006605 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEA-P 617 (639)
Q Consensus 539 ~~ia~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~-p 617 (639)
+.||+|||+.+ ...||||+|||++|+++++.. .+.|..++|||||||+|||++||+++++ |
T Consensus 189 ---~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999985 889999999999999998743 3368999999999999999999999999 9
Q ss_pred CCCHHHHHHHHhhcccc
Q 006605 618 LLEPSCYKISIDDHNNE 634 (639)
Q Consensus 618 ~~sp~~i~~~~~~~~~~ 634 (639)
.+++.|||..|......
T Consensus 251 ~~~~~~v~~~l~~ta~~ 267 (312)
T cd07489 251 KLSPAELRDLLASTAKP 267 (312)
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 99999999999887654
No 14
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.1e-42 Score=354.13 Aligned_cols=260 Identities=21% Similarity=0.185 Sum_probs=185.5
Q ss_pred EEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCCCC
Q 006605 158 VIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGH 237 (639)
Q Consensus 158 ~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 237 (639)
+|||||||||.+||+|.++.. ....+.. ....+.|..+|
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~-----------------------------~~~~~~~------------~~~~~~d~~gH 40 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA-----------------------------EDDLDSD------------EPGWTADDLGH 40 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc-----------------------------ccccccc------------CCCCcCCCCCC
Confidence 799999999999999997611 1111110 00115688999
Q ss_pred chhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCC----CCCHHHHHHHHHHHHhCC---CcEEEeccCC
Q 006605 238 GSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF----GGFVADVVAAIDQAVHDG---VDILSLSVGP 310 (639)
Q Consensus 238 GThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~----~~~~s~i~~ai~~a~~~g---~dVIn~SlG~ 310 (639)
||||||||++.... .....|+||+++|+.+|++...+ ..+.+++++||+|+++++ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 99999999975432 12367999999999999999864 356778999999999853 4999999998
Q ss_pred CCCCCCCCcCcccHHHHHHHH-HHhCCcEEEEecCCCCCCCCCc------------ccCCCccEEEceeecCcceeeeeE
Q 006605 311 NSPPATTKTTFLNPFDVTLLA-AVKAGVFVAQAAGNGGPFPKTL------------VSYSPWITTVAAAIDDRRYKNHLN 377 (639)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~------------~~~~~~vitVgA~~~~~~~~~~~~ 377 (639)
....... ....+..++++ +.++|++||+||||+|...... |+.++++|+|||++.+.....+.
T Consensus 113 ~~~~~~~---~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s- 188 (291)
T cd04847 113 PLPIDDG---RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA- 188 (291)
T ss_pred CCCccCC---CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-
Confidence 7543221 12356666654 5689999999999999875432 33456777777765432110000
Q ss_pred eCCCeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHH
Q 006605 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (639)
Q Consensus 378 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~ 457 (639)
. + +
T Consensus 189 --------------------------------------------~------------------~------~--------- 191 (291)
T cd04847 189 --------------------------------------------R------------------Y------S--------- 191 (291)
T ss_pred --------------------------------------------c------------------c------c---------
Confidence 0 0 0
Q ss_pred HHHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCC
Q 006605 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (639)
Q Consensus 458 ~~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 537 (639)
. ..
T Consensus 192 ------------------------------------~-----------------------------------------~~ 194 (291)
T cd04847 192 ------------------------------------A-----------------------------------------VG 194 (291)
T ss_pred ------------------------------------c-----------------------------------------cc
Confidence 0 00
Q ss_pred ccccccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCC--------CCCCCcCCCceEEEeeeccccccccccc
Q 006605 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNG--------TDEANFVGKRICLDIWNQYGCTTYSRDS 609 (639)
Q Consensus 538 ~~~ia~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~--------~~~~~~~~~~y~~~sGTSmAaP~vaG~~ 609 (639)
....+.||||||... +.+||||+|||++|.++.+... .......++.|..++|||||||+|||++
T Consensus 195 ~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~a 267 (291)
T cd04847 195 PAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLA 267 (291)
T ss_pred cccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHH
Confidence 001133999999985 9999999999999998754221 0112234678999999999999999999
Q ss_pred eeccccCCCCCHHHHHHHHhhc
Q 006605 610 CSCEAEAPLLEPSCYKISIDDH 631 (639)
Q Consensus 610 al~~~~~p~~sp~~i~~~~~~~ 631 (639)
||+++++|++||+|||.+|.+.
T Consensus 268 All~~~~p~~t~~~ikalL~~s 289 (291)
T cd04847 268 AGLFAELPELSPETIRALLIHS 289 (291)
T ss_pred HHHHHHCCCCCHHHHHHHHHhh
Confidence 9999999999999999999764
No 15
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.2e-41 Score=342.00 Aligned_cols=256 Identities=30% Similarity=0.435 Sum_probs=198.3
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCC
Q 006605 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (639)
Q Consensus 154 G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (639)
|+||+|+|||+|||++||+|.+..... +.+.. .........|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~-----------------------------~~~~~---------~~~~~~~~~d 42 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF-----------------------------ADFVN---------TVNGRTTPYD 42 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc-----------------------------ccccc---------cccCCCCCCC
Confidence 899999999999999999999762110 00000 0011234567
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhC----CCcEEEeccC
Q 006605 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD----GVDILSLSVG 309 (639)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~----g~dVIn~SlG 309 (639)
..+|||||||+|+|..... .....||||+|+|+.+|+++..+.+..+++++|++|++++ +++|||||||
T Consensus 43 ~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g 115 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG 115 (264)
T ss_pred CCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccC
Confidence 7899999999999985431 2347899999999999999988778889999999999998 9999999999
Q ss_pred CCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC--CcccCCCccEEEceeecCcceeeeeEeCCCeEEEee
Q 006605 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGI 387 (639)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~ 387 (639)
..... ......+.++++++.++|+++|+||||++.... ..|...+++|+|||++.+..
T Consensus 116 ~~~~~----~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------- 175 (264)
T cd07487 116 APPDP----SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------- 175 (264)
T ss_pred CCCCC----CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------
Confidence 86543 224678999999999999999999999997654 33334455555554221100
Q ss_pred ccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEE
Q 006605 388 GLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGF 467 (639)
Q Consensus 388 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gv 467 (639)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCC
Q 006605 468 VLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSAR 547 (639)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~ 547 (639)
....++.||++
T Consensus 176 ---------------------------------------------------------------------~~~~~~~~s~~ 186 (264)
T cd07487 176 ---------------------------------------------------------------------HDDGISYFSSR 186 (264)
T ss_pred ---------------------------------------------------------------------CCccccccccC
Confidence 00123789999
Q ss_pred CCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHH
Q 006605 548 GPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKIS 627 (639)
Q Consensus 548 GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~ 627 (639)
||+.+ +++||||+|||.+|+++.+... ......++.|..++|||||||+|||++||+++++|.|+|.|||..
T Consensus 187 G~~~~-------~~~~~di~apG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~ 258 (264)
T cd07487 187 GPTGD-------GRIKPDVVAPGENIVSCRSPGG-NPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCI 258 (264)
T ss_pred CCCCC-------CCcCCCEEccccceEecccccc-ccCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHH
Confidence 99985 9999999999999999876431 112334678999999999999999999999999999999999999
Q ss_pred Hhhc
Q 006605 628 IDDH 631 (639)
Q Consensus 628 ~~~~ 631 (639)
|.+.
T Consensus 259 L~~t 262 (264)
T cd07487 259 LRDT 262 (264)
T ss_pred HHhh
Confidence 9864
No 16
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-40 Score=341.86 Aligned_cols=267 Identities=30% Similarity=0.403 Sum_probs=199.4
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccC---CCCCCCCC
Q 006605 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAF---NPAVDFAS 230 (639)
Q Consensus 154 G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~---~~~~~~~~ 230 (639)
|+||+|||||||||++||+|.+.. +.+.++..+++|.......... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG-----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC-----------------------CCCCceeeeeECccCCCCcccccccccccccCC
Confidence 899999999999999999999651 1223455555554431110000 00001122
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCC
Q 006605 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (639)
Q Consensus 231 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~ 310 (639)
..|..+|||||||+|+|...+. ..+.|+||+|+|+.+|++...+.+...+++++++|+++++++|||||||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4568999999999999975432 34789999999999999987667889999999999999999999999997
Q ss_pred CCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCccEEEceeecCcceeeeeEeCCCeEEEeec
Q 006605 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (639)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~ 388 (639)
.... ....+..+++++.++|+++|+||||+|...... |...+++|+||+++.
T Consensus 130 ~~~~------~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~-------------------- 183 (295)
T cd07474 130 SVNG------PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTV-------------------- 183 (295)
T ss_pred CCCC------CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeec--------------------
Confidence 5432 356888999999999999999999998765433 445577777776530
Q ss_pred cCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEE
Q 006605 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (639)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi 468 (639)
T Consensus 184 -------------------------------------------------------------------------------- 183 (295)
T cd07474 184 -------------------------------------------------------------------------------- 183 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCC
Q 006605 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (639)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~G 548 (639)
.. .. ........||++|
T Consensus 184 ------------------------~~----------------~~-----------------------~~~~~~~~~s~~~ 200 (295)
T cd07474 184 ------------------------AD----------------VA-----------------------EADTVGPSSSRGP 200 (295)
T ss_pred ------------------------cC----------------cC-----------------------CCCceeccCCCCC
Confidence 00 00 0000113445555
Q ss_pred CCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHHH
Q 006605 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKISI 628 (639)
Q Consensus 549 Pt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~~ 628 (639)
|+. ...+||||+|||++|+++++.. ++.|..++|||||||+|||++||+++++|.|+|+|||.+|
T Consensus 201 ~~~-------~~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L 265 (295)
T cd07474 201 PTS-------DSAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAAL 265 (295)
T ss_pred CCC-------CCCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 655 4899999999999999998742 4679999999999999999999999999999999999999
Q ss_pred hhccccc
Q 006605 629 DDHNNEV 635 (639)
Q Consensus 629 ~~~~~~~ 635 (639)
.+.....
T Consensus 266 ~~tA~~~ 272 (295)
T cd07474 266 MNTAKPL 272 (295)
T ss_pred HhhCccc
Confidence 9876543
No 17
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-40 Score=333.62 Aligned_cols=225 Identities=21% Similarity=0.309 Sum_probs=176.1
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCCC
Q 006605 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (639)
Q Consensus 157 v~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 236 (639)
|+|||||||||.+||+|.++.. ..+++. ...+.|..+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~-----------------------------~~~~~~--------------~~~~~~~~~ 37 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI-----------------------------ARLFFA--------------GPGAPAPSA 37 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc-----------------------------ccccCC--------------CCCCCCCCC
Confidence 7899999999999999986521 111110 013456789
Q ss_pred CchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCC---CCCHHHHHHHHHHHHhCCCcEEEeccCCCCC
Q 006605 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF---GGFVADVVAAIDQAVHDGVDILSLSVGPNSP 313 (639)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~---~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~ 313 (639)
|||||||||+|.... ..|+||+|+|+.+|++...+ .++.+++++||+||+++|++|||||||...
T Consensus 38 HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~- 105 (239)
T cd05561 38 HGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP- 105 (239)
T ss_pred CHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 999999999997431 26999999999999998643 367788999999999999999999999631
Q ss_pred CCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCccEEEceeecCcceeeeeEeCCCeEEEeeccCCC
Q 006605 314 PATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPA 392 (639)
Q Consensus 314 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~~~~~ 392 (639)
...++++++++.++|+++|+||||+|... ..+|+..++||+||+++.
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------ 153 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------ 153 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------
Confidence 35788999999999999999999998642 122333333333333110
Q ss_pred CCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeec
Q 006605 393 THGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVE 472 (639)
Q Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~ 472 (639)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCCCCCC
Q 006605 473 NVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIK 552 (639)
Q Consensus 473 ~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~GPt~~ 552 (639)
.+.++.||++||.
T Consensus 154 -----------------------------------------------------------------~~~~~~~s~~g~~-- 166 (239)
T cd05561 154 -----------------------------------------------------------------RGRLYREANRGAH-- 166 (239)
T ss_pred -----------------------------------------------------------------CCCccccCCCCCc--
Confidence 0123567888873
Q ss_pred CCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHHHhhcc
Q 006605 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKISIDDHN 632 (639)
Q Consensus 553 ~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~~~~~~ 632 (639)
+||.|||.+|+++.+ ++.|..++|||||||||||++||+++++| |++.|||..|.+.-
T Consensus 167 -----------~di~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta 224 (239)
T cd05561 167 -----------VDFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATA 224 (239)
T ss_pred -----------ceEEccccceecccC----------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHh
Confidence 589999999999865 56899999999999999999999999999 99999999999988
Q ss_pred ccccc
Q 006605 633 NEVGQ 637 (639)
Q Consensus 633 ~~~~~ 637 (639)
.+.|.
T Consensus 225 ~~~g~ 229 (239)
T cd05561 225 KDLGP 229 (239)
T ss_pred hccCC
Confidence 77764
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=7e-40 Score=336.52 Aligned_cols=262 Identities=23% Similarity=0.232 Sum_probs=190.3
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCC-CCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSH-HTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
+|.. +++|+||+|+|||||||++||+|.+. ...++.+. ...+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~----------------------~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------------------VNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc----------------------cCCccccc-------
Confidence 5766 89999999999999999999999976 21111100 00000000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCC
Q 006605 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (639)
Q Consensus 222 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~ 301 (639)
..........|..+|||||||||+|..+......|. ....|+||+++|+.+|++........++++++|+|+++.++
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 000112334577899999999999975432211111 12456999999999999998767788899999999999999
Q ss_pred cEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCccEEEceeecCcceee
Q 006605 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-------GVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKN 374 (639)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~ 374 (639)
+|||||||.... ..+...+.++++.+.++ |+++|+||||++.....+|+..+++|+||+++.
T Consensus 126 ~Vin~S~g~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 126 VILQNSWGGTGG-----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred cEEEecCCCCCc-----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999998542 12355788888888888 999999999998764444444444444443210
Q ss_pred eeEeCCCeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhh
Q 006605 375 HLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKK 454 (639)
Q Consensus 375 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~ 454 (639)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCccccc
Q 006605 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPIL 534 (639)
Q Consensus 455 k~~~~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 534 (639)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccCCCCCCCCCccCCCCcccccccCCCC-ceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceecc
Q 006605 535 HKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGS-LIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCE 613 (639)
Q Consensus 535 ~~~~~~ia~FSS~GPt~~~~~~~~~~~lKPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~ 613 (639)
.+.++.||+||+. +||+|||. +|+++++.... ...+.|..++|||||||+|||++||++
T Consensus 195 ---~~~~~~~S~~g~~-------------~~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 195 ---NDNKASFSNYGRW-------------VDIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ---CCCcCccccCCCc-------------eEEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 0122578888874 48999999 99988764321 225679999999999999999999999
Q ss_pred ccCCC-CCHHHHHHHHhhc
Q 006605 614 AEAPL-LEPSCYKISIDDH 631 (639)
Q Consensus 614 ~~~p~-~sp~~i~~~~~~~ 631 (639)
+++|. |+|+|||..|.++
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999863
No 19
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=334.68 Aligned_cols=259 Identities=22% Similarity=0.295 Sum_probs=192.3
Q ss_pred hcCCeEEEEEecCCccccccCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhccC--------------
Q 006605 19 LGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYARHLEKKHDMLLGLLFERD-------------- 84 (639)
Q Consensus 19 ~~~~~~yiV~lk~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 84 (639)
-..+.+|||.|++. ..++.++.....+...|......+....
T Consensus 77 ~~~~~~YiV~f~~~------------------------~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~ 132 (501)
T KOG1153|consen 77 EALPSRYIVVFKPD------------------------ASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTF 132 (501)
T ss_pred cccccceEEEeCCC------------------------ccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhh
Confidence 37789999999966 2334445555555555554333221111
Q ss_pred -CeeEEEeecc-eeeEEEEEcCHHHHHHHHcCCCceEEEeeeeecccC-----CCCCcccCCCC---------CCCCCCC
Q 006605 85 -TYKKLYSYKH-LINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLT-----THTPEFLGLPT---------GVWPTGG 148 (639)
Q Consensus 85 -~~~~~~~~~~-~~~g~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~~~~~~g~~~---------~~w~~~~ 148 (639)
..+..+.... +++++.-.++.+-+..++++|-++.++++..+.... .+....|+|.+ ..|....
T Consensus 133 ~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~ 212 (501)
T KOG1153|consen 133 GGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYV 212 (501)
T ss_pred cccccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEE
Confidence 1333444444 888888999999999999999999999887776543 33444566642 2333322
Q ss_pred CCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCC
Q 006605 149 GFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDF 228 (639)
Q Consensus 149 ~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~ 228 (639)
..-..|+||...|+||||+..||||.++.. | |..+. ..
T Consensus 213 Y~~~aG~gvtaYv~DTGVni~H~dFegRa~--------w------Ga~i~----------------------------~~ 250 (501)
T KOG1153|consen 213 YEIDAGKGVTAYVLDTGVNIEHPDFEGRAI--------W------GATIP----------------------------PK 250 (501)
T ss_pred eecccCCCeEEEEeccccccccccccccee--------c------ccccC----------------------------CC
Confidence 233589999999999999999999998832 2 11110 01
Q ss_pred CCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhC---------
Q 006605 229 ASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD--------- 299 (639)
Q Consensus 229 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~--------- 299 (639)
....|++||||||||+|++. ..|||.+++|+++||+.++|+++.+++++++||+++.
T Consensus 251 ~~~~D~nGHGTH~AG~I~sK--------------t~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~ 316 (501)
T KOG1153|consen 251 DGDEDCNGHGTHVAGLIGSK--------------TFGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEG 316 (501)
T ss_pred CcccccCCCcceeeeeeecc--------------ccccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccC
Confidence 23468999999999999997 4699999999999999999999999999999999985
Q ss_pred CCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCccEEEcee
Q 006605 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL-VSYSPWITTVAAA 366 (639)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~~~vitVgA~ 366 (639)
+..|.|||+|+.. .-.++.|+++|.+.|+++++||||+..++|.+ |+.+.++|||||+
T Consensus 317 k~sv~NlSlGg~~---------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAs 375 (501)
T KOG1153|consen 317 KKSVANLSLGGFR---------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGAS 375 (501)
T ss_pred CCeEEEEecCCcc---------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccc
Confidence 5789999999843 45899999999999999999999998877654 4456777777763
No 20
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-39 Score=329.07 Aligned_cols=251 Identities=20% Similarity=0.270 Sum_probs=187.8
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCC
Q 006605 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (639)
Q Consensus 156 gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 235 (639)
||+|||||||||++||+|.+... ...+|..+ .......+.|..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----------------------------~~~~~~~~--------~~~~~~~~~d~~ 43 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----------------------------QWADFDEN--------RRISATEVFDAG 43 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----------------------------CceeccCC--------CCCCCCCCCCCC
Confidence 79999999999999999986521 11111110 011123455788
Q ss_pred CCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 006605 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (639)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (639)
+|||||||||+|...+ +...||||+++|+.+|++...+ +..++++++++|+++++++|||||||.....
T Consensus 44 ~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 112 (254)
T cd07490 44 GHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS- 112 (254)
T ss_pred CcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC-
Confidence 9999999999998542 2367999999999999998764 7889999999999999999999999975321
Q ss_pred CCCcCcccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCccEEEceeecCcceeeeeEeCCCeEEEeeccCCCCC
Q 006605 316 TTKTTFLNPFDVTLLAAVK-AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATH 394 (639)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 394 (639)
...+..+++.+.+ +|++||+||||+|.....+|...+++|+|||++.+.....+
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~------------------- 167 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF------------------- 167 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-------------------
Confidence 4567777777765 69999999999998877778888999999987543211000
Q ss_pred CCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCC
Q 006605 395 GNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENV 474 (639)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~ 474 (639)
. .+ |.
T Consensus 168 ---------------------------------s-----------~~------g~------------------------- 172 (254)
T cd07490 168 ---------------------------------S-----------SF------GS------------------------- 172 (254)
T ss_pred ---------------------------------c-----------CC------cc-------------------------
Confidence 0 00 00
Q ss_pred CCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCCCCCCCC
Q 006605 475 SPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDF 554 (639)
Q Consensus 475 ~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~GPt~~~~ 554 (639)
.+...++++|...
T Consensus 173 -----------------------------------------------------------------~~~~~~~~~~~~~-- 185 (254)
T cd07490 173 -----------------------------------------------------------------SGASLVSAPDSPP-- 185 (254)
T ss_pred -----------------------------------------------------------------cccccccCCCCCc--
Confidence 0011112233322
Q ss_pred ccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHHHhhc
Q 006605 555 SFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKISIDDH 631 (639)
Q Consensus 555 ~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~~~~~ 631 (639)
....||||+|||.+|+++.... ..++.|..++|||||||+|||++||+++++|.|+|.|||.+|..+
T Consensus 186 ----~~~~~~d~~apG~~i~~~~~~~------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~t 252 (254)
T cd07490 186 ----DEYTKPDVAAPGVDVYSARQGA------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTET 252 (254)
T ss_pred ----cCCcCceEEeccCCeEccccCC------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 3678999999999999976322 236789999999999999999999999999999999999999865
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-39 Score=335.80 Aligned_cols=268 Identities=18% Similarity=0.174 Sum_probs=182.2
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCC
Q 006605 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (639)
Q Consensus 156 gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 235 (639)
||+|||||||||++||+|.++...+|..+..-.... .+.... .+...-.++.+... ..+.........+..
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~-~~~~~~-----~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~ 71 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIAN-DGDGRD-----SDPTDPGDWVTGDD---VPPGGFCGSGVSPSS 71 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCccccc-CCCCCC-----CCCCCccccccccc---ccccccccCCCCCCC
Confidence 799999999999999999987543332211000000 000000 00000000000000 000111123345678
Q ss_pred CCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHH----------hCCCcEEE
Q 006605 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV----------HDGVDILS 305 (639)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~----------~~g~dVIn 305 (639)
+|||||||||+|...++ ..+.||||+|+|+.+|+++..+. +.+++++|++|++ .++++|||
T Consensus 72 ~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~~-~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin 142 (285)
T cd07496 72 WHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCGG-TLSDIVDGMRWAAGLPVPGVPVNPNPAKVIN 142 (285)
T ss_pred CCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCCC-cHHHHHHHHHHHhccCcCCCcccCCCCeEEE
Confidence 99999999999985422 23789999999999999987654 8889999999998 46789999
Q ss_pred eccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCccEEEceeecCcceeeeeEeCCCeEE
Q 006605 306 LSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKIL 384 (639)
Q Consensus 306 ~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~ 384 (639)
||||.... ....+.++++.+.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 143 ~S~G~~~~-------~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 143 LSLGGDGA-------CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred eCCCCCCC-------CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 99998532 146788999999999999999999998754 3334444455554432110
Q ss_pred EeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCC
Q 006605 385 AGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGA 464 (639)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga 464 (639)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccc
Q 006605 465 AGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF 544 (639)
Q Consensus 465 ~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~F 544 (639)
+.++.|
T Consensus 201 --------------------------------------------------------------------------~~~~~~ 206 (285)
T cd07496 201 --------------------------------------------------------------------------GQRASY 206 (285)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 022568
Q ss_pred cCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCC-----CCCCcCCCceEEEeeeccccccccccceeccccCCCC
Q 006605 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGT-----DEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLL 619 (639)
Q Consensus 545 SS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~ 619 (639)
|+|||. +||.|||++|.+....... .........|..++|||||||+|||++||+++++|.|
T Consensus 207 S~~g~~-------------vdi~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~l 273 (285)
T cd07496 207 SNYGPA-------------VDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSL 273 (285)
T ss_pred cCCCCC-------------CCEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 888874 3788999998887654311 1122235678999999999999999999999999999
Q ss_pred CHHHHHHHHhh
Q 006605 620 EPSCYKISIDD 630 (639)
Q Consensus 620 sp~~i~~~~~~ 630 (639)
+|.|||.+|++
T Consensus 274 t~~~v~~~L~~ 284 (285)
T cd07496 274 TPAQIESLLQS 284 (285)
T ss_pred CHHHHHHHHHh
Confidence 99999999974
No 22
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=5.8e-39 Score=333.43 Aligned_cols=276 Identities=19% Similarity=0.185 Sum_probs=199.2
Q ss_pred CCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCC
Q 006605 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (639)
Q Consensus 150 ~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (639)
.+++|+||+|||||||||++||+|.+..... ..+.++++.....+.+
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~------------------~~~~~~~~~~~~~~~~--------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK------------------TNLFHRKIVRYDSLSD--------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc------------------CccCcccEEEeeccCC---------------
Confidence 4799999999999999999999998652100 0112234444333322
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCC-CCHHHHHHHHHHHHhCCCcEEEecc
Q 006605 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG-GFVADVVAAIDQAVHDGVDILSLSV 308 (639)
Q Consensus 230 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-~~~s~i~~ai~~a~~~g~dVIn~Sl 308 (639)
...|..+|||||||||+|....... ...+.||||+|+|+.+|++...+. ....++..+++++.+.+++||||||
T Consensus 49 ~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 49 TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccC
Confidence 1227899999999999998654210 013689999999999999987642 4566788999999999999999999
Q ss_pred CCCCCCCCCCcCcccHHHHHHHHHHh--CCcEEEEecCCCCCCCC---CcccCCCccEEEceeecCcceeeeeEeCCCeE
Q 006605 309 GPNSPPATTKTTFLNPFDVTLLAAVK--AGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (639)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~--~Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~ 383 (639)
|..... ....+..++.++.. +|+++|+||||+|.... ..|...+++|+|||++......
T Consensus 124 G~~~~~------~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------- 187 (293)
T cd04842 124 GSPVNN------GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------- 187 (293)
T ss_pred CCCCcc------ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------
Confidence 986432 12344555555443 79999999999998765 5667789999999976432100
Q ss_pred EEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcC
Q 006605 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (639)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~G 463 (639)
...|. .
T Consensus 188 ----------------------------------~~~~~-----------------------------~----------- 193 (293)
T cd04842 188 ----------------------------------GEGGL-----------------------------G----------- 193 (293)
T ss_pred ----------------------------------ccccc-----------------------------c-----------
Confidence 00010 0
Q ss_pred CeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCcccccc
Q 006605 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (639)
Q Consensus 464 a~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~ 543 (639)
.. .....++.
T Consensus 194 -----------------------------~~-----------------------------------------~~~~~~~~ 203 (293)
T cd04842 194 -----------------------------QS-----------------------------------------DNSDTVAS 203 (293)
T ss_pred -----------------------------cc-----------------------------------------CCCCcccc
Confidence 00 00124589
Q ss_pred ccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCC------
Q 006605 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAP------ 617 (639)
Q Consensus 544 FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p------ 617 (639)
||++||+.+ +++||||+|||++|+++.+.. ..........|...+|||||||+|||++||++|++|
T Consensus 204 ~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~-~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~ 275 (293)
T cd04842 204 FSSRGPTYD-------GRIKPDLVAPGTGILSARSGG-GGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPT 275 (293)
T ss_pred ccCcCCCCC-------CCcCCCEECCCCCeEeccCCC-CCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 999999985 999999999999999997542 111122356889999999999999999999999855
Q ss_pred --CCCHHHHHHHHhhc
Q 006605 618 --LLEPSCYKISIDDH 631 (639)
Q Consensus 618 --~~sp~~i~~~~~~~ 631 (639)
.+++++||++|.+.
T Consensus 276 ~~~~~~~~~ka~l~~s 291 (293)
T cd04842 276 KFNPSAALLKALLINS 291 (293)
T ss_pred CcCcCHHHHHHHHHhc
Confidence 66667999999864
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.4e-38 Score=324.83 Aligned_cols=241 Identities=25% Similarity=0.347 Sum_probs=193.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 142 ~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
.+|.. + +|+||+|+|||+|||++||+|... ++...+++.+.
T Consensus 20 ~~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~----------------------------~~~~~~~~~~~------ 60 (260)
T cd07484 20 KAWDI----T-GGSGVTVAVVDTGVDPTHPDLLKV----------------------------KFVLGYDFVDN------ 60 (260)
T ss_pred HHHhh----c-CCCCCEEEEEeCCCCCCCcccccC----------------------------CcccceeccCC------
Confidence 56776 3 999999999999999999998543 12222333221
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCC
Q 006605 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (639)
Q Consensus 222 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~ 301 (639)
...+.|..+|||||||||++....+ ..+.|+||+|+|+.+|+++..+.+...+++++++++++.++
T Consensus 61 ------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 61 ------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGA 126 (260)
T ss_pred ------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 2235678899999999999975432 23789999999999999998777888999999999999999
Q ss_pred cEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEEceeecCcceeeeeEeCCC
Q 006605 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (639)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~g~~ 381 (639)
+|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 127 ~iin~S~g~~~--------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------ 186 (260)
T cd07484 127 KVINLSLGGGL--------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------ 186 (260)
T ss_pred eEEEecCCCCC--------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------
Confidence 99999999743 3568889999999999999999999998766666666666666653110
Q ss_pred eEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHh
Q 006605 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (639)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~ 461 (639)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCcccc
Q 006605 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (639)
Q Consensus 462 ~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 541 (639)
+..
T Consensus 187 -----------------------------------------------------------------------------~~~ 189 (260)
T cd07484 187 -----------------------------------------------------------------------------DKR 189 (260)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 011
Q ss_pred ccccCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCH
Q 006605 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEP 621 (639)
Q Consensus 542 a~FSS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp 621 (639)
+.||++|+. +|++|||.+|+++.+ .+.|..++|||||||+|||++||+++++| ||+
T Consensus 190 ~~~s~~g~~-------------~~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~ 245 (260)
T cd07484 190 ASFSNYGKW-------------VDVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSA 245 (260)
T ss_pred CCcCCCCCC-------------ceEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCH
Confidence 356666653 489999999999875 46799999999999999999999999999 999
Q ss_pred HHHHHHHhhcccccc
Q 006605 622 SCYKISIDDHNNEVG 636 (639)
Q Consensus 622 ~~i~~~~~~~~~~~~ 636 (639)
.|||..|.++-.++|
T Consensus 246 ~~i~~~L~~tA~~~g 260 (260)
T cd07484 246 SEVRDALKKTADDIG 260 (260)
T ss_pred HHHHHHHHHhCccCc
Confidence 999999999887765
No 24
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.2e-38 Score=324.28 Aligned_cols=227 Identities=26% Similarity=0.329 Sum_probs=182.4
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCC
Q 006605 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (639)
Q Consensus 151 ~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (639)
+++|+||+||||||||+++||+|.++ +...+++.+. ..
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------------~~~~~~~~~~-------------~~ 58 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------------AIWGADFVGG-------------DP 58 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCC-----------------------------eeeeeecCCC-------------CC
Confidence 69999999999999999999999865 2222233221 12
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhC-----CCcEEE
Q 006605 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-----GVDILS 305 (639)
Q Consensus 231 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~-----g~dVIn 305 (639)
..|..+|||||||||++. ..||||+|+|+.+|+++..+.+..++++++++|++++ +++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~--------------~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGK--------------TYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHcc--------------ccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 567889999999999986 3699999999999999988778889999999999986 589999
Q ss_pred eccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCccEEEceeecCcceeeeeEeCCCeEE
Q 006605 306 LSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKIL 384 (639)
Q Consensus 306 ~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~ 384 (639)
||||... ...+..+++++.++|+++|+||||+|.... ..|+..+++|+|||++.+
T Consensus 125 ~S~g~~~---------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 125 MSLGGGA---------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred eCCCCCC---------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 9999742 457888999999999999999999986542 223333444444432100
Q ss_pred EeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCC
Q 006605 385 AGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGA 464 (639)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga 464 (639)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccc
Q 006605 465 AGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF 544 (639)
Q Consensus 465 ~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~F 544 (639)
+..+.|
T Consensus 181 --------------------------------------------------------------------------~~~~~~ 186 (255)
T cd04077 181 --------------------------------------------------------------------------DARASF 186 (255)
T ss_pred --------------------------------------------------------------------------CCccCc
Confidence 012678
Q ss_pred cCCCCCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHH
Q 006605 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCY 624 (639)
Q Consensus 545 SS~GPt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i 624 (639)
|+|||. +||+|||.+|+++.+. .++.|..++|||||||+|||++||+++++|.|+|+||
T Consensus 187 S~~g~~-------------~~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v 245 (255)
T cd04077 187 SNYGSC-------------VDIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245 (255)
T ss_pred ccCCCC-------------CcEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 899985 3799999999998763 2568999999999999999999999999999999999
Q ss_pred HHHHhhcc
Q 006605 625 KISIDDHN 632 (639)
Q Consensus 625 ~~~~~~~~ 632 (639)
|..|.+..
T Consensus 246 ~~~L~~tA 253 (255)
T cd04077 246 KARLLNLA 253 (255)
T ss_pred HHHHHhhc
Confidence 99998653
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.7e-39 Score=323.19 Aligned_cols=159 Identities=26% Similarity=0.354 Sum_probs=124.3
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCCC
Q 006605 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (639)
Q Consensus 157 v~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 236 (639)
|+|||||||||++||+|.+.. ++...+++.. ....+.|..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------------~~~~~~~~~~------------~~~~~~~~~~ 41 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------------KLVPGWNFVS------------NNDPTSDIDG 41 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------------CccCCccccC------------CCCCCCCCCC
Confidence 689999999999999999741 0111111111 1123467889
Q ss_pred CchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCC
Q 006605 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPAT 316 (639)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 316 (639)
|||||||||+|+..+. ..+.||||+|+|+.+|++...+.+..+++.++++|+++.+++|||||||.....
T Consensus 42 HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~-- 111 (242)
T cd07498 42 HGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST-- 111 (242)
T ss_pred CHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC--
Confidence 9999999999975322 247899999999999999887667889999999999999999999999975432
Q ss_pred CCcCcccHHHHHHHHHHh-CCcEEEEecCCCCCCCCCcccCCCccEEEcee
Q 006605 317 TKTTFLNPFDVTLLAAVK-AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366 (639)
Q Consensus 317 ~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~ 366 (639)
......+..+++++.+ +|+++|+||||+|......++..+++|+|||+
T Consensus 112 --~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~ 160 (242)
T cd07498 112 --ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAAT 160 (242)
T ss_pred --chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEe
Confidence 2235678888899998 99999999999998766666667777777764
No 26
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-38 Score=326.65 Aligned_cols=159 Identities=27% Similarity=0.347 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 142 ~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
.+|.. +++|+||+||||||||+..|| |..+. +.+ ++. +..
T Consensus 12 ~~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~---------~~~---------------~~~----~~~------- 51 (298)
T cd07494 12 RVHQR----GITGRGVRVAMVDTGFYAHPF-FESRG---------YQV---------------RVV----LAP------- 51 (298)
T ss_pred HHHhc----CCCCCCcEEEEEeCCCcCCch-hhcCC---------ccc---------------eee----cCC-------
Confidence 56766 899999999999999999998 76542 110 000 000
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCC
Q 006605 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (639)
Q Consensus 222 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~ 301 (639)
.......|++||||||||+ +.||||+|+|+.+|++++ ..+++++|++|++++++
T Consensus 52 ----~~~~~~~D~~gHGT~vag~------------------i~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~ 105 (298)
T cd07494 52 ----GATDPACDENGHGTGESAN------------------LFAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSP 105 (298)
T ss_pred ----CCCCCCCCCCCcchheeec------------------eeEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCC
Confidence 0112346788999999976 358999999999999875 35678999999999999
Q ss_pred cEEEeccCCCCCCCCC-----CcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEEceeecC
Q 006605 302 DILSLSVGPNSPPATT-----KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDD 369 (639)
Q Consensus 302 dVIn~SlG~~~~~~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVgA~~~~ 369 (639)
+|||||||........ .......++++++++.++|++||+||||++. .+|+..|+||+|||++.+
T Consensus 106 dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~ 175 (298)
T cd07494 106 DIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVD 175 (298)
T ss_pred CEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEecc
Confidence 9999999985432110 0112346888999999999999999999974 568888999999998643
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.3e-38 Score=319.32 Aligned_cols=160 Identities=26% Similarity=0.327 Sum_probs=117.3
Q ss_pred CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCC
Q 006605 155 EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDG 234 (639)
Q Consensus 155 ~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (639)
+||+|||||||||++||+|.++........ .+.+....+..+.. . ..+++| ......+.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~-~~~~~~~~~~~~~~-----~-~~~~~~------------~~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEI-PGNGIDDDGNGYVD-----D-IYGWNF------------VNNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccc-cccCcccCCCCccc-----C-CCcccc------------cCCCCCCCCC
Confidence 689999999999999999998732110000 01111111111100 0 011111 1123556788
Q ss_pred CCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 006605 235 DGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPP 314 (639)
Q Consensus 235 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~ 314 (639)
.+|||||||||+|....+ ..+.|+||+|+|+.+|++...+.+...+++++++|+++.+++|||+|||...
T Consensus 63 ~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~-- 132 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG-- 132 (259)
T ss_pred CCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC--
Confidence 999999999999975432 2368999999999999999877788999999999999999999999999743
Q ss_pred CCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCC
Q 006605 315 ATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF 349 (639)
Q Consensus 315 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 349 (639)
....+..+++++.++|+++|+||||+|..
T Consensus 133 ------~~~~~~~~~~~~~~~g~ivV~aaGN~g~~ 161 (259)
T cd07473 133 ------PSQALRDAIARAIDAGILFVAAAGNDGTN 161 (259)
T ss_pred ------CCHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 25688899999999999999999999864
No 28
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-38 Score=317.31 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=114.9
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCC
Q 006605 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (639)
Q Consensus 154 G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d 233 (639)
+++|+|||||||||++||+|.++. ..+++|..... +.....+...|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-----------------------------~~~~~~~~~~~-----~~~~~~~~~~d 47 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-----------------------------IGGKSFSPYEG-----DGNKVSPYYVS 47 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-----------------------------ccCCCCCCCCC-----CcccCCCCCCC
Confidence 789999999999999999999751 11122221100 00001122357
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCC------CCCHHHHHHHHHHHHhCCCcEEEec
Q 006605 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF------GGFVADVVAAIDQAVHDGVDILSLS 307 (639)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~------~~~~s~i~~ai~~a~~~g~dVIn~S 307 (639)
..||||||||||+ |+||+|+|+.+|+++..+ .++...+++||+||+++|+||||||
T Consensus 48 ~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S 109 (247)
T cd07491 48 ADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS 109 (247)
T ss_pred CCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee
Confidence 8899999999975 479999999999998765 3467789999999999999999999
Q ss_pred cCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC-Cc--ccCCCccEEEce
Q 006605 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TL--VSYSPWITTVAA 365 (639)
Q Consensus 308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~~~vitVgA 365 (639)
||....... ......+.+++++|.++|++||+||||+|.... .+ |+..++||+|||
T Consensus 110 ~g~~~~~~~--~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA 168 (247)
T cd07491 110 WTIKKPEDN--DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGA 168 (247)
T ss_pred eeccccccc--ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEe
Confidence 997543110 123568899999999999999999999997643 22 223355555555
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.2e-37 Score=311.65 Aligned_cols=227 Identities=25% Similarity=0.370 Sum_probs=179.9
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCC
Q 006605 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (639)
Q Consensus 156 gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 235 (639)
||+|||||+||+.+||+|.++. ...++|... ....+.|..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-----------------------------~~~~~~~~~-----------~~~~~~~~~ 40 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-----------------------------VGGANFTGD-----------DNNDYQDGN 40 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-----------------------------cCcccccCC-----------CCCCCCCCC
Confidence 7999999999999999998651 112222211 003445788
Q ss_pred CCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 006605 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (639)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (639)
+|||||||+|++..... .+.|+||+|+|+.+|+++.++.+..++++++++|+++++++|||||||...
T Consensus 41 ~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~--- 108 (229)
T cd07477 41 GHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS--- 108 (229)
T ss_pred CCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---
Confidence 99999999999975421 368999999999999999877778899999999999999999999999742
Q ss_pred CCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc--ccCCCccEEEceeecCcceeeeeEeCCCeEEEeeccCCCC
Q 006605 316 TTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPAT 393 (639)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 393 (639)
....+..+++.+.++|+++|+||||++...... |+..+++|+||+++.+
T Consensus 109 -----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 109 -----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 245778889999999999999999998765433 4444555555442210
Q ss_pred CCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecC
Q 006605 394 HGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473 (639)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~ 473 (639)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCCCCCCC
Q 006605 474 VSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKD 553 (639)
Q Consensus 474 ~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~GPt~~~ 553 (639)
+.++.||+|||.
T Consensus 160 -----------------------------------------------------------------~~~~~~s~~g~~--- 171 (229)
T cd07477 160 -----------------------------------------------------------------NNRASFSSTGPE--- 171 (229)
T ss_pred -----------------------------------------------------------------CCcCCccCCCCC---
Confidence 012356777763
Q ss_pred CccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHHHhhc
Q 006605 554 FSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKISIDDH 631 (639)
Q Consensus 554 ~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~~~~~ 631 (639)
|||+|||.+|+++++ .+.|..++|||||||+|||++||++|++|.|+|.|||..|..+
T Consensus 172 ----------~~~~apg~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 172 ----------VELAAPGVDILSTYP----------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ----------ceEEeCCCCeEEecC----------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 689999999999986 5678999999999999999999999999999999999999864
No 30
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-37 Score=323.08 Aligned_cols=148 Identities=28% Similarity=0.414 Sum_probs=112.5
Q ss_pred CCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCC
Q 006605 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (639)
Q Consensus 150 ~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (639)
.+++|+||+|||||||||.+||+|.++.. ...+|.+ ..
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------------~~~~~~~-------------~~ 40 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------------TTKSFVG-------------GE 40 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------------cCcccCC-------------CC
Confidence 37999999999999999999999997621 1112211 12
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccC
Q 006605 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVG 309 (639)
Q Consensus 230 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG 309 (639)
.+.|.++|||||||||+|+... +...||||+|+|+.+|++.....+..+++++|++|+++++++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2467899999999999997543 2257999999999999998877788888999999999999999999999
Q ss_pred CCCCC------CCCCcCcccHHHHHHHHH---------------HhCCcEEEEecCCCCCC
Q 006605 310 PNSPP------ATTKTTFLNPFDVTLLAA---------------VKAGVFVAQAAGNGGPF 349 (639)
Q Consensus 310 ~~~~~------~~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~ 349 (639)
..... ... ......++...+.+ .++|++||+||||+|..
T Consensus 112 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~ 171 (297)
T cd07480 112 ADFPGLVDQGWPPG-LAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQR 171 (297)
T ss_pred CCCcccccccCCCC-chhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCC
Confidence 85411 110 11223444444444 67999999999999864
No 31
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-37 Score=317.92 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=104.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 142 ~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
.+|+.. ...|+||+|+|||+|||.+||||.++.... .+
T Consensus 6 ~aw~~~---~g~G~gV~VaviDtGid~~Hpdl~~~~~~~-----------------------------~~---------- 43 (277)
T cd04843 6 YAWTKP---GGSGQGVTFVDIEQGWNLNHEDLVGNGITL-----------------------------IS---------- 43 (277)
T ss_pred HHHHhc---CCCCCcEEEEEecCCCCCCChhhccccccc-----------------------------cC----------
Confidence 567763 345899999999999999999999762100 00
Q ss_pred CCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHh---
Q 006605 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH--- 298 (639)
Q Consensus 222 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~--- 298 (639)
...+.|+++|||||||||+|..+ + .++.||||+|+|+.+|+++ .++++++|.||++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n-~--------~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~ 102 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDN-G--------IGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLS 102 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecC-C--------CceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccC
Confidence 01145788999999999999632 1 1368999999999999986 2345666666666
Q ss_pred -CCCcEEEeccCCCCCCCCC-CcCcccHHHHHHHHHHhCCcEEEEecCCCCCC
Q 006605 299 -DGVDILSLSVGPNSPPATT-KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF 349 (639)
Q Consensus 299 -~g~dVIn~SlG~~~~~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 349 (639)
.++.+||||||........ .......+.++++++.++|+++|+||||++..
T Consensus 103 ~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~ 155 (277)
T cd04843 103 PGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQD 155 (277)
T ss_pred CCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCcc
Confidence 4567899999985321100 01123456678999999999999999999864
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=3.1e-37 Score=320.60 Aligned_cols=156 Identities=25% Similarity=0.331 Sum_probs=111.4
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCC
Q 006605 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (639)
Q Consensus 156 gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 235 (639)
.|+|||||||||++||+|.++....... +.....+.. .......+...+.|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~----------------------~~~~~~~~~-----~~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKN----------------------LVPKGGYDG-----KEAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccc----------------------cccCCCcCC-----ccccccCCCCcCCCCC
Confidence 3899999999999999999652110000 000000000 0001111223456789
Q ss_pred CCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 006605 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (639)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (639)
+|||||||+|+|... ..||||+|+|+.+|+++..+....++++++|+|+++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999999732 35999999999999999876668899999999999999999999999754332
Q ss_pred CCC---cCcccHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 006605 316 TTK---TTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350 (639)
Q Consensus 316 ~~~---~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 350 (639)
... ......+.++++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 110 12235678888889999999999999999753
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-36 Score=297.99 Aligned_cols=148 Identities=26% Similarity=0.246 Sum_probs=111.1
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCC
Q 006605 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (639)
Q Consensus 156 gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 235 (639)
||+|||||||||++||+|.++.... +.+..+ ....+...+.|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG-----------------------------EVTIDL-------EIIVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc-----------------------------cccccc-------ccccCCCCCCCCC
Confidence 7999999999999999999762110 000000 0011123456789
Q ss_pred CCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCC
Q 006605 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (639)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (639)
+|||||||||++. +|+++|+.+|+++..+.+..+++++|++|+++++++|||||||.....
T Consensus 45 gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~- 105 (222)
T cd07492 45 GHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR- 105 (222)
T ss_pred CcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-
Confidence 9999999999874 599999999999987778889999999999999999999999975321
Q ss_pred CCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEEc
Q 006605 316 TTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVA 364 (639)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~vitVg 364 (639)
....+..+++++.++|+++|+||||++.... .|+..++||+||
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~ 148 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVK 148 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEE
Confidence 2357888999999999999999999986422 133334444444
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.4e-35 Score=304.25 Aligned_cols=174 Identities=22% Similarity=0.244 Sum_probs=114.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 142 ~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
.+|.. +++|+||+|+|||||||++||+|.++... ...++|.+.
T Consensus 30 ~~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------------~~~~~~~~~------ 72 (297)
T cd04059 30 PAWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------------EASYDFNDN------ 72 (297)
T ss_pred HHHhC----CCCCcceEEEEEeCCcccCCHhHhhcccc---------------------------cccccccCC------
Confidence 56766 79999999999999999999999976210 011122111
Q ss_pred CCCCCCCCCC--CCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhC
Q 006605 222 FNPAVDFASP--LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD 299 (639)
Q Consensus 222 ~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~ 299 (639)
.....+ .|..+|||||||||+|..... ....||||+|+|+.+|+++.. .....+..++.++.+
T Consensus 73 ----~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ----DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ----CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 001122 278899999999999985421 136899999999999999864 334445566666554
Q ss_pred CCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC--c--ccCCCccEEEceeec
Q 006605 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK-----AGVFVAQAAGNGGPFPKT--L--VSYSPWITTVAAAID 368 (639)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~--~--~~~~~~vitVgA~~~ 368 (639)
.++|||||||........ ......+.++++++.. +|++||+||||+|..... . +...+++|+|||++.
T Consensus 138 ~~~Vin~S~g~~~~~~~~-~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~ 214 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTV-DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA 214 (297)
T ss_pred CceEEECCCCCCCCCCcc-CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC
Confidence 459999999976432211 1123345556666554 699999999999973211 1 123356666666544
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.6e-34 Score=295.61 Aligned_cols=152 Identities=32% Similarity=0.377 Sum_probs=116.0
Q ss_pred CCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCC
Q 006605 153 AGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPL 232 (639)
Q Consensus 153 ~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (639)
+|+||+|+|||+||+.+||+|.+...... .+.. ..........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~-----------------------------~~~~--------~~~~~~~~~~ 43 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS-----------------------------YYVA--------VNDAGYASNG 43 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc-----------------------------cccc--------cccccCCCCC
Confidence 69999999999999999999997621100 0000 0000112345
Q ss_pred CCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCC-CCCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 006605 233 DGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF-GGFVADVVAAIDQAVHDGVDILSLSVGPN 311 (639)
Q Consensus 233 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~s~i~~ai~~a~~~g~dVIn~SlG~~ 311 (639)
|..+|||||||+|+|.... ....|+||+|+|+.+|+++..+ ......+.++++++++.+++|||||||..
T Consensus 44 ~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 114 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN 114 (267)
T ss_pred CCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC
Confidence 7889999999999998543 2478999999999999998865 56677889999999999999999999986
Q ss_pred CCCCCC-------CcCcccHHHHHHHHHHhCCcEEEEecCCCCCCC
Q 006605 312 SPPATT-------KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350 (639)
Q Consensus 312 ~~~~~~-------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 350 (639)
...... .......+..+++.+.++|+++|+||||++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~ 160 (267)
T cd04848 115 PAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQAN 160 (267)
T ss_pred CcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCC
Confidence 533210 012456788889999999999999999998753
No 36
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.7e-34 Score=298.11 Aligned_cols=253 Identities=29% Similarity=0.434 Sum_probs=185.7
Q ss_pred EEEEecceecCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCCCCCCCCC
Q 006605 158 VIGFVDSGIYPHHPSFG-SHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (639)
Q Consensus 158 ~VaViDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 236 (639)
+|||||||||++||+|. ++. ...++.+.+.|.++. .......|..+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 47 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNG 47 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB---------STTTSSSTSSS
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC---------CCcCccccCCC
Confidence 69999999999999999 541 012344456665531 11234567889
Q ss_pred CchhhhhhhccCC-CCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHH-hCCCcEEEeccCCCCCC
Q 006605 237 HGSHTAAIAAGNN-GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSVGPNSPP 314 (639)
Q Consensus 237 HGThVAGiiag~~-~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~-~~g~dVIn~SlG~~~~~ 314 (639)
|||||||+|+|.. .. .....|+||+|+|+.+|++...+ ....++++++++++ +.+++|||||||.....
T Consensus 48 HGT~va~ii~~~~~~~--------~~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 48 HGTHVAGIIAGNGGNN--------GPGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHHTTSSS--------SSSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred ccchhhhhcccccccc--------ccccccccccccccccccccccc-cccccccchhhhhhhccCCccccccccccccc
Confidence 9999999999985 21 12368999999999999988765 78888999999999 89999999999873211
Q ss_pred CCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCccEEEceeecCcceeeeeEeCCCeEEEeeccCC
Q 006605 315 ATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT---LVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSP 391 (639)
Q Consensus 315 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~~~~ 391 (639)
.. ......+..+++.+.++|+++|+||||+|..... .|...+++|+||+++
T Consensus 119 ~~--~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~------------------------ 172 (282)
T PF00082_consen 119 PD--PSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD------------------------ 172 (282)
T ss_dssp SH--SHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE------------------------
T ss_pred cc--cccccccccccccccccCcceeeccccccccccccccccccccccccccccc------------------------
Confidence 10 1223456777888999999999999998875432 222234444444322
Q ss_pred CCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEee
Q 006605 392 ATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAV 471 (639)
Q Consensus 392 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~ 471 (639)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCCCCC
Q 006605 472 ENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551 (639)
Q Consensus 472 ~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~GPt~ 551 (639)
. .+.++.||++|+..
T Consensus 173 ----------------------~-------------------------------------------~~~~~~~s~~g~~~ 187 (282)
T PF00082_consen 173 ----------------------N-------------------------------------------NGQPASYSNYGGPS 187 (282)
T ss_dssp ----------------------T-------------------------------------------TSSBSTTSSBSTTE
T ss_pred ----------------------c-------------------------------------------cccccccccccccc
Confidence 0 00236788886554
Q ss_pred CCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCCCCCHHHHHHHHhhc
Q 006605 552 KDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAPLLEPSCYKISIDDH 631 (639)
Q Consensus 552 ~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p~~sp~~i~~~~~~~ 631 (639)
. ++++||||+|||.+|+++++... ...|..++|||||||+|||++|++++++|.|++.|||.+|.+.
T Consensus 188 ~------~~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~t 254 (282)
T PF00082_consen 188 D------DGRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINT 254 (282)
T ss_dssp T------TCTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred c------ccccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 2 58999999999999999986321 1458889999999999999999999999999999999988776
Q ss_pred ccccc
Q 006605 632 NNEVG 636 (639)
Q Consensus 632 ~~~~~ 636 (639)
....+
T Consensus 255 a~~~~ 259 (282)
T PF00082_consen 255 ADDLG 259 (282)
T ss_dssp SBESS
T ss_pred CcccC
Confidence 55443
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-31 Score=276.63 Aligned_cols=140 Identities=23% Similarity=0.390 Sum_probs=118.3
Q ss_pred CCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCC
Q 006605 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (639)
Q Consensus 150 ~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (639)
.|+||++|+|||.|||+.-+||.|+.- ....++.++ .
T Consensus 196 ~GyTGa~VkvAiFDTGl~~~HPHFrnv------------------------------KERTNWTNE-------------~ 232 (1033)
T KOG4266|consen 196 KGYTGAKVKVAIFDTGLRADHPHFRNV------------------------------KERTNWTNE-------------D 232 (1033)
T ss_pred ccccCCceEEEEeecccccCCccccch------------------------------hhhcCCcCc-------------c
Confidence 489999999999999999999999953 001111111 2
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccC
Q 006605 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVG 309 (639)
Q Consensus 230 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG 309 (639)
.-.|..||||.|||+|||... ..|.||+++|+++|||.++.-.+.++.++|++||+..+.||+|+|.|
T Consensus 233 tLdD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIG 300 (1033)
T KOG4266|consen 233 TLDDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIG 300 (1033)
T ss_pred ccccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccC
Confidence 345788999999999999742 57999999999999999887789999999999999999999999999
Q ss_pred CCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCC
Q 006605 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK 351 (639)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~ 351 (639)
++ .+.+.|+-+-+..+...+|++|.|+||+|+-..
T Consensus 301 GP-------DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYG 335 (1033)
T KOG4266|consen 301 GP-------DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYG 335 (1033)
T ss_pred Cc-------ccccchHHHHHHhhccCcEEEEEecCCCCccee
Confidence 86 556788888888889999999999999998643
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=7.9e-31 Score=263.11 Aligned_cols=118 Identities=16% Similarity=0.059 Sum_probs=81.6
Q ss_pred CCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHH--HhCCCcEEEecc
Q 006605 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQA--VHDGVDILSLSV 308 (639)
Q Consensus 231 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a--~~~g~dVIn~Sl 308 (639)
..|.++|||||||||||. .|++|+++|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 357899999999999996 25679999987655322 223456777787 668999999999
Q ss_pred CCCCCCCCCC-cCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CcccCCCccEEEceee
Q 006605 309 GPNSPPATTK-TTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK-----TLVSYSPWITTVAAAI 367 (639)
Q Consensus 309 G~~~~~~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-----~~~~~~~~vitVgA~~ 367 (639)
|......... ......+..+++.+.++ |+++|+||||+|.... ..|+.++++|+|||++
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 9864432100 01134677888887776 9999999999997532 1233445666666643
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.96 E-value=2.4e-28 Score=244.91 Aligned_cols=123 Identities=35% Similarity=0.469 Sum_probs=100.2
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHH-hCCCcEEEecc
Q 006605 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSV 308 (639)
Q Consensus 230 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~-~~g~dVIn~Sl 308 (639)
...+..+||||||++|++..... ...|+||+++|+.+|+...........+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34577899999999999985432 137999999999999998876677888999999999 89999999999
Q ss_pred CCCCCCCCCCcCcccHHHHHHHHHHhC-CcEEEEecCCCCCCCC---CcccCCCccEEEceee
Q 006605 309 GPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAI 367 (639)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~~~vitVgA~~ 367 (639)
|..... ....+..++.++.++ |+++|+||||.+.... ..+...+++|+||+++
T Consensus 110 g~~~~~------~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP------PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC------CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 985432 245788888888888 9999999999998765 3555667777777643
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=259.40 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=160.8
Q ss_pred CCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCC--CCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 006605 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSVGPN 311 (639)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~s~i~~ai~~a~~~g~dVIn~SlG~~ 311 (639)
..-||||||||++|+..+.- ...||||+|+|+.+++.+..-+ -+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 45799999999999975431 3679999999999999875422 2345689999999999999999999988
Q ss_pred CCCCCCCcCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccC---CCccEEEceeecCcceeeeeEeCCCeEEEeec
Q 006605 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (639)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~---~~~vitVgA~~~~~~~~~~~~~g~~~~~~~~~ 388 (639)
..+.+. ...++.+-+.+.++|+++|.||||.||.-++++++ ...||.|||....
T Consensus 381 a~~pn~----GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp------------------- 437 (1304)
T KOG1114|consen 381 AHLPNS----GRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP------------------- 437 (1304)
T ss_pred CCCCCc----chHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH-------------------
Confidence 776543 34444444555578999999999999987665443 2355555541100
Q ss_pred cCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEE
Q 006605 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (639)
Q Consensus 389 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi 468 (639)
. +.+
T Consensus 438 ------------------------------------~--------------------------mm~-------------- 441 (1304)
T KOG1114|consen 438 ------------------------------------G--------------------------MMQ-------------- 441 (1304)
T ss_pred ------------------------------------H--------------------------HHH--------------
Confidence 0 000
Q ss_pred EeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCC
Q 006605 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (639)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~G 548 (639)
+.+. .+. +-...+..+||||
T Consensus 442 ----------------------------------a~y~---~~e-----------------------~vp~~~YtWsSRg 461 (1304)
T KOG1114|consen 442 ----------------------------------AEYS---VRE-----------------------PVPSNPYTWSSRG 461 (1304)
T ss_pred ----------------------------------hhhh---hhc-----------------------cCCCCccccccCC
Confidence 0000 000 0011357899999
Q ss_pred CCCCCCccCCCCcccccccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceecc----ccCCCCCHHHH
Q 006605 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCE----AEAPLLEPSCY 624 (639)
Q Consensus 549 Pt~~~~~~~~~~~lKPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~----~~~p~~sp~~i 624 (639)
|+.| |.+=--|.|||+-|-|. |. +.-..-..|+|||||+|+++|.+||++ +.+=.|||--|
T Consensus 462 P~~D-------G~lGVsi~APggAiAsV-P~-------~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysV 526 (1304)
T KOG1114|consen 462 PCLD-------GDLGVSISAPGGAIASV-PQ-------YTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSV 526 (1304)
T ss_pred CCcC-------CCcceEEecCCccccCC-ch-------hhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHH
Confidence 9995 99999999999988554 32 234456789999999999999999985 77899999999
Q ss_pred HHHHhhcccccc
Q 006605 625 KISIDDHNNEVG 636 (639)
Q Consensus 625 ~~~~~~~~~~~~ 636 (639)
|-+|++-...+|
T Consensus 527 rrAlenTa~~l~ 538 (1304)
T KOG1114|consen 527 RRALENTATKLG 538 (1304)
T ss_pred HHHHHhcccccC
Confidence 999998776654
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.4e-21 Score=213.19 Aligned_cols=148 Identities=28% Similarity=0.419 Sum_probs=115.4
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhccCCCCCCCC-
Q 006605 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA- 229 (639)
Q Consensus 151 ~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~- 229 (639)
+++|+||+|+|||+||+..||+|.+.... .++|.+. ...
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------------~~~~~~~-----------~~~~ 177 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------------GGDFVDG-----------DPEP 177 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccccc-----------------------------ccccccC-----------CCCC
Confidence 68999999999999999999999976210 0122221 001
Q ss_pred CCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecC-CCCCHHHHHHHHHHHHhCC--CcEEEe
Q 006605 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL-FGGFVADVVAAIDQAVHDG--VDILSL 306 (639)
Q Consensus 230 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~-~~~~~s~i~~ai~~a~~~g--~dVIn~ 306 (639)
...|.++|||||+|++++.... +.....|++|+++++.+|++... +.+..++++++++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 2468899999999999994211 11236899999999999999976 6678888999999999999 999999
Q ss_pred ccCCCCCCCCCCcCcccHHHHHHHHHHhCC-cEEEEecCCCCCCC
Q 006605 307 SVGPNSPPATTKTTFLNPFDVTLLAAVKAG-VFVAQAAGNGGPFP 350 (639)
Q Consensus 307 SlG~~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~ 350 (639)
|+|.. .. ......+..++..+...| +++|+|+||++.+.
T Consensus 251 s~g~~-~~----~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 251 SLGGS-LS----DSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred cCCCC-cc----ccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 99985 11 123567888889998887 99999999999764
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-18 Score=171.38 Aligned_cols=154 Identities=22% Similarity=0.359 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhcc
Q 006605 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (639)
Q Consensus 142 ~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (639)
.+|.. +++|++|+++|+|.||||.|||++.+ |. --..++|..+
T Consensus 152 ~awa~----g~tgknvttaimddgvdymhpdlk~n----yn-----------------------aeasydfssn------ 194 (629)
T KOG3526|consen 152 EAWAL----GYTGKNVTTAIMDDGVDYMHPDLKSN----YN-----------------------AEASYDFSSN------ 194 (629)
T ss_pred HHHhh----cccCCCceEEeecCCchhcCcchhcc----cC-----------------------ceeecccccC------
Confidence 46666 89999999999999999999999965 21 1122333322
Q ss_pred CCCCCCCCCCC--C--CCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHH
Q 006605 222 FNPAVDFASPL--D--GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV 297 (639)
Q Consensus 222 ~~~~~~~~~~~--d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~ 297 (639)
++.+.|+ | .+.|||.|||-+++..+++.- -.|||++.++..+|+++. .+..|+++|-..-.
T Consensus 195 ----dpfpyprytddwfnshgtrcagev~aardngic--------gvgvaydskvagirmldq---pymtdlieansmgh 259 (629)
T KOG3526|consen 195 ----DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGH 259 (629)
T ss_pred ----CCCCCCcccchhhhccCccccceeeeeccCCce--------eeeeeeccccceeeecCC---chhhhhhhhcccCC
Confidence 1222222 2 579999999998877655432 479999999999999985 66778877754433
Q ss_pred h-CCCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHh-----CCcEEEEecCCCCC
Q 006605 298 H-DGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK-----AGVFVAQAAGNGGP 348 (639)
Q Consensus 298 ~-~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~ 348 (639)
+ ..++|.+-|||.......- ....+..-+|+-+-++ .|-+.|.|.|..|.
T Consensus 260 ep~kihiysaswgptddgktv-dgprnatmraiv~gvnegrnglgsiyvwasgdgge 315 (629)
T KOG3526|consen 260 EPSKIHIYSASWGPTDDGKTV-DGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGE 315 (629)
T ss_pred CCceEEEEecccCcCCCCccc-CCchhHHHHHHHHhhhcccCCcccEEEEecCCCCC
Confidence 3 4688999999975432110 0112222233333333 35677777777664
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.59 E-value=3.1e-15 Score=159.37 Aligned_cols=103 Identities=23% Similarity=0.260 Sum_probs=82.0
Q ss_pred ceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhC---CCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcE
Q 006605 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD---GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVF 338 (639)
Q Consensus 262 ~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~---g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~ 338 (639)
...||||+|+|+.+++.++. ..+++.++.+++++ +++|||+|||....... ..+...++.+++++..+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~--~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP--PAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC--HHHHHHHHHHHHHHHhCCeE
Confidence 36899999999999998753 34577888888886 99999999998643211 12346788899999999999
Q ss_pred EEEecCCCCCCCC-----------CcccCCCccEEEceeecCc
Q 006605 339 VAQAAGNGGPFPK-----------TLVSYSPWITTVAAAIDDR 370 (639)
Q Consensus 339 vV~AAGN~g~~~~-----------~~~~~~~~vitVgA~~~~~ 370 (639)
||+||||+|.... .+|+.+|+|++||+++...
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 9999999997653 3467789999999987654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.29 E-value=1.9e-11 Score=112.77 Aligned_cols=118 Identities=25% Similarity=0.252 Sum_probs=83.9
Q ss_pred CceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCC
Q 006605 396 NRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS 475 (639)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~ 475 (639)
....++++.+. |. +.++...+++||||||+| |.|.|.+|+.+++++||.++|++++...
T Consensus 25 ~~~~~lv~~g~--------------g~-~~d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~ 83 (143)
T cd02133 25 GKTYELVDAGL--------------GT-PEDFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDG 83 (143)
T ss_pred CcEEEEEEccC--------------Cc-hhccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCC
Confidence 45677887533 32 234555689999999998 6799999999999999999999998643
Q ss_pred CCcccCCCcccccEEEEcCcchHHHHHHHHhcCCCcCCccceeecceeEEEccCcccccCCCccccccccCCCCCC
Q 006605 476 PGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551 (639)
Q Consensus 476 ~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ia~FSS~GPt~ 551 (639)
...........||+++|+. .+++.|++++++. .++++... .. ..+.+.++.||||||..
T Consensus 84 ~~~~~~~~~~~iP~v~Is~-~dG~~L~~~l~~~-------------~~i~~~~~--~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 84 LIPGTLGEAVFIPVVFISK-EDGEALKAALESS-------------KKLTFNTK--KE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred cccccCCCCCeEeEEEecH-HHHHHHHHHHhCC-------------CeEEEEec--cc-cccCCccccccCcCCCC
Confidence 2111111234699999998 9999999998751 12222221 22 35667899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.14 E-value=5.3e-10 Score=100.84 Aligned_cols=117 Identities=26% Similarity=0.413 Sum_probs=88.0
Q ss_pred eEeCCCeEEEeeccCCCCCCCceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccCcc-hhhh
Q 006605 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA-SIKK 454 (639)
Q Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~-~~~~ 454 (639)
+.+||+..+.|+++++... ..+++++..... .......|.. ...+..+++||||||+| +.| .+.+
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~-----~~~~~~~C~~-~~~~~~~v~GkIVlc~~------~~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS-----GDVDASLCLP-GSLDPSKVKGKIVLCDR------GGNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC-----CCCccccCCC-CCCChhhccccEEEEeC------CCCccHHH
Confidence 5689999999999986543 356676533211 2234578974 44556789999999988 568 8889
Q ss_pred hHHHHHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCcchHHHHHHHHhcC
Q 006605 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 455 k~~~~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~~~g~~l~~~~~~~ 508 (639)
|..+++++||.|+|++++...... .......+|++.|.. ++++.|++|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~-~~~~~~~iP~v~I~~-~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLD-VVADAHVLPAVHVDY-EDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCce-ecccccccceEEECH-HHHHHHHHHHHcC
Confidence 999999999999999988654322 222245799999988 9999999999975
No 46
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.96 E-value=4.3e-09 Score=92.62 Aligned_cols=84 Identities=18% Similarity=0.286 Sum_probs=66.1
Q ss_pred CCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCc---ccCCCcccccEEEEc
Q 006605 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT---KFDPVPVGIPGILIT 493 (639)
Q Consensus 417 ~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~---~~~~~~~~ip~~~i~ 493 (639)
....|.+ .++.+.+++|||+|++| |.|+|.+|+.+|+++||.++||||+...... ........||+++|+
T Consensus 29 ~~~gC~~-~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is 101 (120)
T cd02129 29 SSVLCSA-SDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLS 101 (120)
T ss_pred CcCCCCc-cccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEe
Confidence 3467984 45556789999999999 8899999999999999999999999653111 111245679999999
Q ss_pred CcchHHHHHHHHhcC
Q 006605 494 DVTKSMDLVDYYNTS 508 (639)
Q Consensus 494 ~~~~g~~l~~~~~~~ 508 (639)
+ ++|+.|++.+..+
T Consensus 102 ~-~dG~~i~~~l~~~ 115 (120)
T cd02129 102 Y-KDMLDIQQTFGDS 115 (120)
T ss_pred H-HHHHHHHHHhccC
Confidence 9 9999998877653
No 47
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.82 E-value=1.5e-08 Score=89.75 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCC---cccC----CCcccccEE
Q 006605 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPG---TKFD----PVPVGIPGI 490 (639)
Q Consensus 418 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~---~~~~----~~~~~ip~~ 490 (639)
.+.|.++. +..+++|||+|++| |.|+|.+|+.+++++||.++|+||+..... ..+. .....||++
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 46798432 35679999999999 789999999999999999999999864311 1111 234579999
Q ss_pred EEcCcchHHHHHHHHhcC
Q 006605 491 LITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (639)
+|++ .+|+.|++.+..+
T Consensus 93 ~Is~-~dG~~L~~~l~~g 109 (118)
T cd02127 93 FLLG-KNGYMIRKTLERL 109 (118)
T ss_pred EecH-HHHHHHHHHHHcC
Confidence 9999 9999999998875
No 48
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.80 E-value=3.6e-08 Score=81.63 Aligned_cols=47 Identities=40% Similarity=0.593 Sum_probs=40.9
Q ss_pred cCCeeEEEeecceeeEEEEEcCHHHHHHHHcCCCceEEEeeeeeccc
Q 006605 83 RDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRL 129 (639)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 129 (639)
....++.+.|+..|+||+++++++++++|+++|+|++|+||..++++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 34788999999999999999999999999999999999999988763
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.77 E-value=4e-08 Score=88.05 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=66.0
Q ss_pred CCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCc--cc-CC-CcccccEEEEc
Q 006605 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT--KF-DP-VPVGIPGILIT 493 (639)
Q Consensus 418 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~--~~-~~-~~~~ip~~~i~ 493 (639)
...|.+ ..+...+++||||||+| |.|.|.+|..+++++||.++|++|+...... .. .+ ....||+++|+
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is 101 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVIT 101 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEc
Confidence 467974 44556689999999998 7899999999999999999999998653111 11 11 34569999999
Q ss_pred CcchHHHHHHHHhcC
Q 006605 494 DVTKSMDLVDYYNTS 508 (639)
Q Consensus 494 ~~~~g~~l~~~~~~~ 508 (639)
. .+++.|++++..+
T Consensus 102 ~-~~G~~l~~~l~~g 115 (122)
T cd04816 102 K-AAGAALRRRLGAG 115 (122)
T ss_pred H-HHHHHHHHHHcCC
Confidence 9 9999999999865
No 50
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.75 E-value=2.6e-08 Score=85.94 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=58.6
Q ss_pred CCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCC---CCcccCCCcccccEEEEcCcchHHHH
Q 006605 425 EVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS---PGTKFDPVPVGIPGILITDVTKSMDL 501 (639)
Q Consensus 425 ~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~---~~~~~~~~~~~ip~~~i~~~~~g~~l 501 (639)
......+++||||||+| |.|+|.+|+.+++++||.++|+++.... ...........||+++|+. ++++.|
T Consensus 25 ~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~-~~g~~L 97 (101)
T PF02225_consen 25 SDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISY-EDGEAL 97 (101)
T ss_dssp HHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-H-HHHHHH
T ss_pred cccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCH-HHHhhh
Confidence 45667889999999988 8999999999999999999999992111 1222344567899999988 999999
Q ss_pred HHHH
Q 006605 502 VDYY 505 (639)
Q Consensus 502 ~~~~ 505 (639)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9875
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.74 E-value=4.7e-08 Score=88.98 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCCCcCCCCCCC-ccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCC-CCCcc-c-CCCcccccEEE
Q 006605 416 YSASDCQRPEVL-NKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENV-SPGTK-F-DPVPVGIPGIL 491 (639)
Q Consensus 416 ~~~~~c~~~~~~-~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~-~~~~~-~-~~~~~~ip~~~ 491 (639)
...+.|.+.... .+.+++|+|+|++| |.|+|.+|+.+|+++||.++|+||+.. ..... + ......||+++
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~ 115 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIM 115 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEE
Confidence 345789843321 34678999999999 789999999999999999999999975 21121 1 22335799999
Q ss_pred EcCcchHHHHHHHHhcC
Q 006605 492 ITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 492 i~~~~~g~~l~~~~~~~ 508 (639)
|++ .+|+.|+++++.+
T Consensus 116 Is~-~~G~~l~~~l~~G 131 (138)
T cd02122 116 ITN-PKGMEILELLERG 131 (138)
T ss_pred EcH-HHHHHHHHHHHcC
Confidence 999 9999999998865
No 52
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.73 E-value=1.1e-07 Score=85.14 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=63.2
Q ss_pred CcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCC---cccCCCcccccEEEEcCc
Q 006605 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPG---TKFDPVPVGIPGILITDV 495 (639)
Q Consensus 419 ~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~---~~~~~~~~~ip~~~i~~~ 495 (639)
..|.+ .++ +.+++|||||++| |.|.|.+|+.+++++||.++|+||+..... .........||+++|+.
T Consensus 32 ~gC~~-~~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~- 102 (122)
T cd02130 32 LGCDA-ADY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ- 102 (122)
T ss_pred CCCCc-ccC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH-
Confidence 45873 223 3579999999998 789999999999999999999998863211 11122345799999999
Q ss_pred chHHHHHHHHhcC
Q 006605 496 TKSMDLVDYYNTS 508 (639)
Q Consensus 496 ~~g~~l~~~~~~~ 508 (639)
.+|+.|++.++.+
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998875
No 53
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.73 E-value=3.1e-08 Score=89.70 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=60.7
Q ss_pred CccCCccccEEEEeeecccccCcch-----hhhhHHHHHhcCCeEEEEeecCCCCCc---ccCC--CcccccEEEEcCcc
Q 006605 427 LNKNLVEGNILLCGYSFNFVTGTAS-----IKKVSETAKSLGAAGFVLAVENVSPGT---KFDP--VPVGIPGILITDVT 496 (639)
Q Consensus 427 ~~~~~~~Gkivl~~r~~~~~~g~~~-----~~~k~~~~~~~Ga~gvi~~~~~~~~~~---~~~~--~~~~ip~~~i~~~~ 496 (639)
+.+.+++|||+|++| |.|. |.+|+++|+++||+++||||+....+. .+.. ...+||+++|++ +
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~-~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDR-A 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeH-H
Confidence 345689999999999 7899 999999999999999999999743332 1121 246899999999 9
Q ss_pred hHHHHHHHHhcC
Q 006605 497 KSMDLVDYYNTS 508 (639)
Q Consensus 497 ~g~~l~~~~~~~ 508 (639)
+|+.|++.+...
T Consensus 123 dG~~L~~~l~~~ 134 (139)
T cd04817 123 DGQALLAALGQS 134 (139)
T ss_pred HHHHHHHHhcCC
Confidence 999999987643
No 54
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.73 E-value=4.2e-08 Score=86.69 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=64.1
Q ss_pred CCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCc-ccC----CCcccccEEE
Q 006605 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT-KFD----PVPVGIPGIL 491 (639)
Q Consensus 417 ~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~-~~~----~~~~~ip~~~ 491 (639)
..+.|.+. +..+++|||+|++| |.|+|.+|+.+++++||+++|+||+....+. .+. .....||+++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 45679732 56789999999998 7899999999999999999999988654221 111 2345799999
Q ss_pred EcCcchHHHHHHHHhc
Q 006605 492 ITDVTKSMDLVDYYNT 507 (639)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (639)
|++ ++++.|++++..
T Consensus 97 Is~-~~g~~L~~l~~~ 111 (117)
T cd04813 97 TSR-TSYHLLSSLLPK 111 (117)
T ss_pred EcH-HHHHHHHHhccc
Confidence 998 999999887664
No 55
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.71 E-value=2.2e-07 Score=83.63 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=62.2
Q ss_pred CCCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcccCCCcccccEEEEcCc
Q 006605 416 YSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDV 495 (639)
Q Consensus 416 ~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~~~~~~~~ip~~~i~~~ 495 (639)
.....|.+. ..+..+++|||+|++| |.|.|.+|+.+++++||+++|+|++..............+|.+.+ +
T Consensus 39 ~~~~gC~~~-~~~~~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~- 109 (129)
T cd02124 39 VADDACQPL-PDDTPDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-P- 109 (129)
T ss_pred CCcccCcCC-CcccccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-H-
Confidence 445789842 2333578999999999 779999999999999999999998864321111223334666666 5
Q ss_pred chHHHHHHHHhcC
Q 006605 496 TKSMDLVDYYNTS 508 (639)
Q Consensus 496 ~~g~~l~~~~~~~ 508 (639)
.+|+.|++.++.+
T Consensus 110 ~~G~~l~~~l~~G 122 (129)
T cd02124 110 EDGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.66 E-value=8.7e-08 Score=86.14 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=64.4
Q ss_pred CCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCC-----Cc-cc--CC---Cccc
Q 006605 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP-----GT-KF--DP---VPVG 486 (639)
Q Consensus 418 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~-----~~-~~--~~---~~~~ 486 (639)
...|... ..+.+++|||+|++| |.|+|.+|+.+++++||.++|++|+.... .. .+ .+ ....
T Consensus 27 ~~gC~~~--~~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEI--TNAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCC--CCccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 4679743 235578999999999 78999999999999999999999875432 11 11 11 2457
Q ss_pred ccEEEEcCcchHHHHHHHHhcC
Q 006605 487 IPGILITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 487 ip~~~i~~~~~g~~l~~~~~~~ 508 (639)
||+++|++ .+|+.|++.++.+
T Consensus 99 IP~v~I~~-~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFLFS-KEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEEEH-HHHHHHHHHHHhC
Confidence 99999999 9999999999865
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=2.1e-07 Score=85.15 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=63.4
Q ss_pred CCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCC-cccC----CCcccccEEEE
Q 006605 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPG-TKFD----PVPVGIPGILI 492 (639)
Q Consensus 418 ~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~-~~~~----~~~~~ip~~~i 492 (639)
.+.|.+. +.+++|||+|++| |.|+|.+|+.|++++||.++|+||+..... +... .....||+++|
T Consensus 48 ~~gC~~~----~~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPS----TSKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCC----CcccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 4679742 2479999999999 789999999999999999999998864311 1111 12458999999
Q ss_pred cCcchHHHHHHHHhcC
Q 006605 493 TDVTKSMDLVDYYNTS 508 (639)
Q Consensus 493 ~~~~~g~~l~~~~~~~ 508 (639)
++ .+|+.|++.+..+
T Consensus 118 s~-~~G~~L~~~l~~g 132 (139)
T cd02132 118 PQ-SAGDALNKSLDQG 132 (139)
T ss_pred cH-HHHHHHHHHHHcC
Confidence 99 9999999998865
No 58
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.64 E-value=1.2e-07 Score=85.02 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCcCCCCCCCc-cC----CccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCccc----------CC
Q 006605 418 ASDCQRPEVLN-KN----LVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF----------DP 482 (639)
Q Consensus 418 ~~~c~~~~~~~-~~----~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~~----------~~ 482 (639)
.+.|.+..... +. ...+||+|++| |.|+|.+|+.+|+++||+++|+||+.+.....+ ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 45787433322 22 37789999999 789999999999999999999999865321111 11
Q ss_pred CcccccEEEEcCcchHHHHHHHHhcC
Q 006605 483 VPVGIPGILITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 483 ~~~~ip~~~i~~~~~g~~l~~~~~~~ 508 (639)
...+||+++|+. .+|+.|++.+..+
T Consensus 96 ~~i~IP~v~Is~-~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALITK-AFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEECH-HHHHHHHHHHhcC
Confidence 234699999999 9999999998875
No 59
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.62 E-value=1.3e-07 Score=87.92 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=65.2
Q ss_pred CCcCCCCCCC--ccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcccCC-----CcccccEE
Q 006605 418 ASDCQRPEVL--NKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDP-----VPVGIPGI 490 (639)
Q Consensus 418 ~~~c~~~~~~--~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~~~~-----~~~~ip~~ 490 (639)
.+.|.+.... +..++.|||+|++| |.|+|.+|+.+|+++||.++|++|+.......+.. ....||++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 4579743221 23688999999999 78999999999999999999999986532212211 24589999
Q ss_pred EEcCcchHHHHHHHHhcC
Q 006605 491 LITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (639)
+|++ .+|+.|+.++...
T Consensus 124 ~Is~-~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FVGK-STGEILKKYASYE 140 (153)
T ss_pred EeeH-HHHHHHHHHHhcC
Confidence 9999 9999999988864
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.52 E-value=3.1e-07 Score=82.59 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=64.7
Q ss_pred CCcCCCCCC--CccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcccC-----CCcccccEE
Q 006605 418 ASDCQRPEV--LNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFD-----PVPVGIPGI 490 (639)
Q Consensus 418 ~~~c~~~~~--~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~~~-----~~~~~ip~~ 490 (639)
...|.+ .. +...+++||||||+| |.|.|.+|+.+++++||.++|++++......... .....||++
T Consensus 30 ~~~C~~-~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 30 LVGCGY-GTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred eEEEec-CcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 446863 33 456789999999988 6799999999999999999999998653211111 134579999
Q ss_pred EEcCcchHHHHHHHHhcC
Q 006605 491 LITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (639)
+|+. ++++.|++++.++
T Consensus 103 ~is~-~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GISY-ADGEALLSLLEAG 119 (126)
T ss_pred EeCH-HHHHHHHHHHhcC
Confidence 9998 9999999999864
No 61
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.51 E-value=4.3e-07 Score=80.87 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcc-cC--CCcccccEEEEc
Q 006605 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK-FD--PVPVGIPGILIT 493 (639)
Q Consensus 417 ~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~-~~--~~~~~ip~~~i~ 493 (639)
....|.+ ... ..+++||||||+| |.|+|.+|..+++++||.++|++++....... +. .....||+++|.
T Consensus 26 ~~~~C~~-~~~-~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~ 97 (118)
T cd04818 26 NTDGCTA-FTN-AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMIS 97 (118)
T ss_pred cccccCC-CCc-CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEec
Confidence 4467974 333 3569999999988 67999999999999999999999886542111 11 123469999998
Q ss_pred CcchHHHHHHHHhcC
Q 006605 494 DVTKSMDLVDYYNTS 508 (639)
Q Consensus 494 ~~~~g~~l~~~~~~~ 508 (639)
. ++++.|+++++.+
T Consensus 98 ~-~~g~~l~~~l~~g 111 (118)
T cd04818 98 Q-ADGDALKAALAAG 111 (118)
T ss_pred H-HHHHHHHHHHhcC
Confidence 8 9999999999864
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.37 E-value=3.8e-06 Score=75.72 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=58.9
Q ss_pred CccCCccccEEEEeeecccccCcc--hhhhhHHHHHhcCCeEEEEeecCCCCCc--c---c-CCCcccccEEEEcCcchH
Q 006605 427 LNKNLVEGNILLCGYSFNFVTGTA--SIKKVSETAKSLGAAGFVLAVENVSPGT--K---F-DPVPVGIPGILITDVTKS 498 (639)
Q Consensus 427 ~~~~~~~Gkivl~~r~~~~~~g~~--~~~~k~~~~~~~Ga~gvi~~~~~~~~~~--~---~-~~~~~~ip~~~i~~~~~g 498 (639)
+...+++|||||++| |.| ++.+|+.+++++||+++|++++...... . . ......||++.|+. +++
T Consensus 38 ~~~~~v~GkIvlv~~------g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~-edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKR------DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSG-EDG 110 (127)
T ss_pred cCCCCCCCeEEEEEc------CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeH-HHH
Confidence 345579999999998 667 8899999999999999999987543211 0 0 12345799999999 999
Q ss_pred HHHHHHHhcC
Q 006605 499 MDLVDYYNTS 508 (639)
Q Consensus 499 ~~l~~~~~~~ 508 (639)
+.|++.++.+
T Consensus 111 ~~L~~~l~~g 120 (127)
T cd04819 111 LRLARVAERN 120 (127)
T ss_pred HHHHHHHhcC
Confidence 9999998864
No 63
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.60 E-value=0.00019 Score=65.29 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=57.8
Q ss_pred ccCCccccEEEEeeecccccCcc------hhhhh-------HHHHHhcCCeEEEEeecCCC------CCcccC-CCcccc
Q 006605 428 NKNLVEGNILLCGYSFNFVTGTA------SIKKV-------SETAKSLGAAGFVLAVENVS------PGTKFD-PVPVGI 487 (639)
Q Consensus 428 ~~~~~~Gkivl~~r~~~~~~g~~------~~~~k-------~~~~~~~Ga~gvi~~~~~~~------~~~~~~-~~~~~i 487 (639)
+..+++|||||++| +.| .|..| .+.++++||.++|+++.... .+.... .....|
T Consensus 34 ~~~~v~GKIvlv~~------~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~I 107 (134)
T cd04815 34 PAGAVKGKIVFFNQ------PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKI 107 (134)
T ss_pred chhhcCCeEEEecC------CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCC
Confidence 35689999999998 678 88888 68999999999999986322 122111 233569
Q ss_pred cEEEEcCcchHHHHHHHHhcC
Q 006605 488 PGILITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 488 p~~~i~~~~~g~~l~~~~~~~ 508 (639)
|++.|+. +++..|.+.++.+
T Consensus 108 P~v~is~-ed~~~L~r~l~~g 127 (134)
T cd04815 108 PAAAISV-EDADMLERLAARG 127 (134)
T ss_pred CEEEech-hcHHHHHHHHhCC
Confidence 9999999 9999999988865
No 64
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.33 E-value=0.00047 Score=65.38 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=55.7
Q ss_pred cCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcc-----------------------------
Q 006605 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK----------------------------- 479 (639)
Q Consensus 429 ~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~----------------------------- 479 (639)
..+++|||||++| |.|.+.+|+++|+++||+++|+|++.......
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~ 124 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQ 124 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccc
Confidence 4579999999998 78999999999999999999999884211000
Q ss_pred cCC----CcccccEEEEcCcchHHHHHHHHhcC
Q 006605 480 FDP----VPVGIPGILITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 480 ~~~----~~~~ip~~~i~~~~~g~~l~~~~~~~ 508 (639)
... .--.||++-|+. .+++.|++.+...
T Consensus 125 ~~~~~~~~lP~IPs~PIS~-~da~~lL~~l~G~ 156 (183)
T cd02128 125 FPPSQSSGLPNIPAQTISA-AAAAKLLSKMGGP 156 (183)
T ss_pred cCcccccCCCCCCEeccCH-HHHHHHHHHcCCC
Confidence 000 112589999988 9999999988653
No 65
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00047 Score=74.74 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=101.8
Q ss_pred CCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEeeecchhhHhhhc
Q 006605 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAAR 220 (639)
Q Consensus 141 ~~~w~~~~~~~~~G~gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~ 220 (639)
+..|.. +++|+++.|+|+|+|++..||++... |.+. +.+++....
T Consensus 23 ~~~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~----~~~~-----------------------~s~d~~~~~---- 67 (431)
T KOG3525|consen 23 QNAWCK----GYTGTRVSVTILDDGLECSHPDLRNN----YDPL-----------------------GSYDVNRHD---- 67 (431)
T ss_pred eecccc----CCCCCceEEEEeeccccccCcccccc----cCcc-----------------------eeEeeecCC----
Confidence 466776 89999999999999999999999965 2221 112221110
Q ss_pred cCCCCCCCCCCCCCCCCchhhhhhhccCCCCCccccccCCCceeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHh-C
Q 006605 221 AFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-D 299 (639)
Q Consensus 221 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~-~ 299 (639)
+.+....+......|||-|++-.+...+.. .-..|++|++++..+|++...- ++...+...... .
T Consensus 68 --~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~~v----~~~~~~~~~~~~~~ 133 (431)
T KOG3525|consen 68 --NDPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAGCV----SDAVEAPSLGFGPC 133 (431)
T ss_pred --CCcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeeeec----ccceecccccCCCC
Confidence 111111222345899999999999875221 1257999999999999987531 122222222222 4
Q ss_pred CCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHH-----hCCcEEEEecCCCCCCCCC
Q 006605 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAV-----KAGVFVAQAAGNGGPFPKT 352 (639)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~ 352 (639)
-+++-..|||........ .........++..+. .+|-+.|+|.||.|.....
T Consensus 134 ~~di~scsw~pddd~~t~-~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~ 190 (431)
T KOG3525|consen 134 HIDIYSCSWGPDDDGKTC-DGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDS 190 (431)
T ss_pred CceeecCcCCcccCCCcC-CCCcchhhhhhhccccccccCCCCeeEEEecCccccccc
Confidence 588999999975432111 112233444444443 3688999999999876544
No 66
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=97.16 E-value=0.0014 Score=59.77 Aligned_cols=71 Identities=18% Similarity=0.085 Sum_probs=48.3
Q ss_pred CceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccc------cCc------chhhhhHHHHHhcC
Q 006605 396 NRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFV------TGT------ASIKKVSETAKSLG 463 (639)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~------~g~------~~~~~k~~~~~~~G 463 (639)
....++|+.+... ....|.. .++...|++|||||+.|+.... .+. .++..|.++++++|
T Consensus 19 ~~~aelVfvGyGi--------~a~~~~~-dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYGI--------KAPELSW-DDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHG 89 (142)
T ss_pred ccceeeEEecCCc--------CCCCCCh-hhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCC
Confidence 4567788765431 1234663 4566679999999998852100 000 15778999999999
Q ss_pred CeEEEEeecCCC
Q 006605 464 AAGFVLAVENVS 475 (639)
Q Consensus 464 a~gvi~~~~~~~ 475 (639)
|.++|++++...
T Consensus 90 A~gvIii~~~~~ 101 (142)
T cd04814 90 AAGVLIVHELAP 101 (142)
T ss_pred CcEEEEEeCCCc
Confidence 999999998653
No 67
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.03 E-value=0.003 Score=57.17 Aligned_cols=70 Identities=17% Similarity=0.045 Sum_probs=47.2
Q ss_pred CceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecccccC------cchhhhhHHHHHhcCCeEEEE
Q 006605 396 NRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTG------TASIKKVSETAKSLGAAGFVL 469 (639)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g------~~~~~~k~~~~~~~Ga~gvi~ 469 (639)
..+-++|+.+... ....|.. .++...+++|||||+.++.....+ ..++..|.+++.++||++||+
T Consensus 21 ~v~gelVfvGyG~--------~~~~~~~-~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi 91 (137)
T cd04820 21 SVEAPLVFVGYGL--------VAPELGH-DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMIT 91 (137)
T ss_pred CceEeEEEecCCc--------CccCcCH-hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEE
Confidence 3456777765432 1234652 345567999999999984311000 014778999999999999999
Q ss_pred eecCC
Q 006605 470 AVENV 474 (639)
Q Consensus 470 ~~~~~ 474 (639)
+++..
T Consensus 92 ~~d~~ 96 (137)
T cd04820 92 LTTPR 96 (137)
T ss_pred EeCCc
Confidence 99854
No 68
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.95 E-value=0.0039 Score=57.49 Aligned_cols=71 Identities=21% Similarity=0.131 Sum_probs=49.7
Q ss_pred CceeeeEEccccccccccccCCCCcCCCCCCCccCCccccEEEEeeecc------c------ccCcchhhhhHHHHHhcC
Q 006605 396 NRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFN------F------VTGTASIKKVSETAKSLG 463 (639)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~r~~~------~------~~g~~~~~~k~~~~~~~G 463 (639)
..+-++|+.+... ....|.. .++...+++|||||+.|+.+ . .+-.|++..|+.+++++|
T Consensus 19 ~vtg~lVfvGyGi--------~~~~~~~-~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (151)
T cd04822 19 AVTAPVVFAGYGI--------TAPELGY-DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHG 89 (151)
T ss_pred CceEeEEEecCCc--------Cccccch-hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCC
Confidence 3456777765431 2234652 34556789999999988632 0 012378899999999999
Q ss_pred CeEEEEeecCCC
Q 006605 464 AAGFVLAVENVS 475 (639)
Q Consensus 464 a~gvi~~~~~~~ 475 (639)
|++||+|++...
T Consensus 90 A~aVIv~~d~~~ 101 (151)
T cd04822 90 AAAVIVVNGPNS 101 (151)
T ss_pred CeEEEEEeCCcc
Confidence 999999998654
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.42 E-value=0.0063 Score=64.58 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=56.1
Q ss_pred cCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCC-----CcccCCCcccccEEEEcCcchHHHHHH
Q 006605 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP-----GTKFDPVPVGIPGILITDVTKSMDLVD 503 (639)
Q Consensus 429 ~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~-----~~~~~~~~~~ip~~~i~~~~~g~~l~~ 503 (639)
...++||++++.| |.|+|.+|+..++++||.+.++.|+..+. +.........||+++|+. ++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~-~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISY-SDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEh-hhHHHHHh
Confidence 4578999999999 89999999999999999999999995431 111223456899999999 99988876
Q ss_pred HH
Q 006605 504 YY 505 (639)
Q Consensus 504 ~~ 505 (639)
..
T Consensus 164 ~~ 165 (541)
T KOG2442|consen 164 ST 165 (541)
T ss_pred hh
Confidence 33
No 70
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.011 Score=61.35 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCcCCCCCCC--ccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcc---cCCCcccccEEEE
Q 006605 418 ASDCQRPEVL--NKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK---FDPVPVGIPGILI 492 (639)
Q Consensus 418 ~~~c~~~~~~--~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~---~~~~~~~ip~~~i 492 (639)
.++|++-..+ ........++|+.| |.|+|.+|+.+|+++|..++|+||+....... ..+....++++++
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v 135 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV 135 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE
Confidence 3668743221 12345677999999 67999999999999999999999986554322 2345678999999
Q ss_pred cCcchHHHHHHHHh
Q 006605 493 TDVTKSMDLVDYYN 506 (639)
Q Consensus 493 ~~~~~g~~l~~~~~ 506 (639)
+. ..|+.|+.|..
T Consensus 136 s~-~~ge~l~~~~~ 148 (348)
T KOG4628|consen 136 SV-FSGELLSSYAG 148 (348)
T ss_pred ee-ehHHHHHHhhc
Confidence 98 88999888644
No 71
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.10 E-value=0.0066 Score=55.34 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=34.5
Q ss_pred CCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCC
Q 006605 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS 475 (639)
Q Consensus 430 ~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~ 475 (639)
-+++|||+|+++ |......|+++|+++||.|+|||.+...
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChhh
Confidence 579999999998 4456678999999999999999998643
No 72
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.019 Score=67.84 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=61.1
Q ss_pred eeeccCCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCC-cEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEE
Q 006605 263 ASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV-DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQ 341 (639)
Q Consensus 263 ~~GvAP~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~-dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~ 341 (639)
.+-+||+|+|..+-. . ....+....|+++...+-. -+|-.||+....-......+-+.++.....+..+||.+++
T Consensus 288 s~A~AP~A~I~lvva--p--~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVA--P--NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEc--C--CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 457899999988755 2 2223333344443333211 3344566652211111011345667777888899999999
Q ss_pred ecCCCCCCCC--------CcccCCCccEEEce
Q 006605 342 AAGNGGPFPK--------TLVSYSPWITTVAA 365 (639)
Q Consensus 342 AAGN~g~~~~--------~~~~~~~~vitVgA 365 (639)
|+|-+|.... ..|+.+|.|.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999987654 24567799999998
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.61 E-value=0.016 Score=57.04 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=35.7
Q ss_pred cCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCC
Q 006605 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS 475 (639)
Q Consensus 429 ~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~ 475 (639)
..+++|||||+.+ |.|...+|+++|+++||++||+|++...
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4589999999988 6677789999999999999999998543
No 74
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.85 E-value=0.015 Score=52.37 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCCcCCCCCCCccCCccccEEEEeeecccccCcchhhhhHHHHHhcCCeEEEEeecCCCCCcc-----cCC----Ccccc
Q 006605 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK-----FDP----VPVGI 487 (639)
Q Consensus 417 ~~~~c~~~~~~~~~~~~Gkivl~~r~~~~~~g~~~~~~k~~~~~~~Ga~gvi~~~~~~~~~~~-----~~~----~~~~i 487 (639)
...+|+ .--+..+..|.|.|++| |.|+|..|..+++++||.++|+.+++.....+ +.+ ....|
T Consensus 73 Pp~aC~--elrN~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~Ani 144 (193)
T KOG3920|consen 73 PPHACE--ELRNEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANI 144 (193)
T ss_pred ChhHHH--HHhhcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCC
Confidence 446786 23355677899999999 89999999999999999999999875443221 211 34579
Q ss_pred cEEEEcCcchHHHHHHHHhcC
Q 006605 488 PGILITDVTKSMDLVDYYNTS 508 (639)
Q Consensus 488 p~~~i~~~~~g~~l~~~~~~~ 508 (639)
|++.+.. .+|..+..-++..
T Consensus 145 Pa~fllg-~~Gy~ir~sL~r~ 164 (193)
T KOG3920|consen 145 PAVFLLG-VTGYYIRVSLKRY 164 (193)
T ss_pred ceEEEec-cceEEEehhHHHh
Confidence 9998876 7776665555543
No 75
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=89.40 E-value=0.57 Score=43.62 Aligned_cols=49 Identities=20% Similarity=0.054 Sum_probs=34.7
Q ss_pred CCccCCccccEEEEeeeccc-cc------Cc------chhhhhHHHHHhcCCeEEEEeecCC
Q 006605 426 VLNKNLVEGNILLCGYSFNF-VT------GT------ASIKKVSETAKSLGAAGFVLAVENV 474 (639)
Q Consensus 426 ~~~~~~~~Gkivl~~r~~~~-~~------g~------~~~~~k~~~~~~~Ga~gvi~~~~~~ 474 (639)
++..-|++|||||+.++.+. .. +. .+...|.+.+.++||.++|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 44567899999999865321 00 00 1344689999999999999998743
No 76
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=81.37 E-value=0.95 Score=31.94 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.0
Q ss_pred ccccCCCCCHHHHHHHHhhcccccc
Q 006605 612 CEAEAPLLEPSCYKISIDDHNNEVG 636 (639)
Q Consensus 612 ~~~~~p~~sp~~i~~~~~~~~~~~~ 636 (639)
+.+.+|+|+++.|+.+|..|++.+.
T Consensus 8 L~~mFP~~~~~~I~~~L~~~~~~ve 32 (42)
T PF02845_consen 8 LQEMFPDLDREVIEAVLQANNGDVE 32 (42)
T ss_dssp HHHHSSSS-HHHHHHHHHHTTTTHH
T ss_pred HHHHCCCCCHHHHHHHHHHcCCCHH
Confidence 5688999999999999999988763
No 77
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=72.99 E-value=1.6 Score=19.27 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=4.8
Q ss_pred cccCCC
Q 006605 543 LFSARG 548 (639)
Q Consensus 543 ~FSS~G 548 (639)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 588887
No 78
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=69.29 E-value=3.4 Score=29.23 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.9
Q ss_pred eeccccCCCCCHHHHHHHHhhccccccc
Q 006605 610 CSCEAEAPLLEPSCYKISIDDHNNEVGQ 637 (639)
Q Consensus 610 al~~~~~p~~sp~~i~~~~~~~~~~~~~ 637 (639)
..+.+.+|+++...|+..|..|++.+.+
T Consensus 7 ~~L~~mFP~l~~~~I~~~L~~~~g~ve~ 34 (43)
T smart00546 7 HDLKDMFPNLDEEVIKAVLEANNGNVEA 34 (43)
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHH
Confidence 3467889999999999999999987753
No 79
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.25 E-value=56 Score=27.62 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.3
Q ss_pred cCCeEEEEEecCC
Q 006605 20 GRAEVYIVTVEGE 32 (639)
Q Consensus 20 ~~~~~yiV~lk~~ 32 (639)
.+-+-|++.++.+
T Consensus 37 Et~~GYL~~v~~d 49 (109)
T COG3784 37 ETLDGYLVAVSTD 49 (109)
T ss_pred ccccceeeeecCc
Confidence 5567899999887
No 80
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=17 Score=44.10 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=34.4
Q ss_pred Cccccc---ccCCCCceEEeeCCCCCCCCCcCCCceEEEeeeccccccccccceeccccCC
Q 006605 560 DLLKPD---ILAPGSLIWAAWSPNGTDEANFVGKRICLDIWNQYGCTTYSRDSCSCEAEAP 617 (639)
Q Consensus 560 ~~lKPD---I~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~vaG~~al~~~~~p 617 (639)
+|+-|| +++|..-+.=++ ++...+.-|||.|+|..||+.|++-|...
T Consensus 449 ~r~i~dv~~~anp~~g~~~~~-----------g~~~~~~GGTS~AtPltAGiiAdi~q~~~ 498 (1174)
T COG4934 449 GRLIPDVVAIANPYTGVVIVF-----------GNQTYVAGGTSLATPLTAGIIADIEQYIG 498 (1174)
T ss_pred ceecCCccccccccCceEEEE-----------CcEEEEecccccccchHHHHHHHHHHHhc
Confidence 566665 555665555554 34566788999999999999999987654
No 81
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=32.02 E-value=2.8e+02 Score=23.97 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=46.4
Q ss_pred eeecc-CCCeEEEEEeeecCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhC-CcEEE
Q 006605 263 ASGMA-PRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVA 340 (639)
Q Consensus 263 ~~GvA-P~A~l~~~kv~~~~~~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV 340 (639)
+.... ++++|+.+ +.+ +++....++.-++++.+.|+++|-+|-........+ .-.-++...+...++ |+-||
T Consensus 30 F~~y~~~~~elvgf--~~C-gGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~---~CP~~~~~~~~I~~~~gi~VV 103 (107)
T PF08821_consen 30 FARYDDEDVELVGF--FTC-GGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG---PCPHIDEIKKIIEEKFGIEVV 103 (107)
T ss_pred cccCCCCCeEEEEE--eeC-CCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC---CCCCHHHHHHHHHHHhCCCEe
Confidence 44444 46888775 344 357778888888999999999999988765433111 111234444444445 88877
Q ss_pred E
Q 006605 341 Q 341 (639)
Q Consensus 341 ~ 341 (639)
.
T Consensus 104 ~ 104 (107)
T PF08821_consen 104 E 104 (107)
T ss_pred e
Confidence 4
No 82
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=31.46 E-value=29 Score=26.13 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=12.6
Q ss_pred cccCCCCCHHHHHHHHh
Q 006605 613 EAEAPLLEPSCYKISID 629 (639)
Q Consensus 613 ~~~~p~~sp~~i~~~~~ 629 (639)
.+.+|+||++||+++|.
T Consensus 38 ~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 38 AEDYPSLTLEDIRAALA 54 (56)
T ss_dssp HHHSTT--HHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHH
Confidence 46699999999999984
No 83
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.47 E-value=66 Score=21.99 Aligned_cols=21 Identities=24% Similarity=0.113 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHhhcccccccC
Q 006605 618 LLEPSCYKISIDDHNNEVGQS 638 (639)
Q Consensus 618 ~~sp~~i~~~~~~~~~~~~~~ 638 (639)
+||-++||.-|..||-.+.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~ 23 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKS 23 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCC
Confidence 699999999999999887764
No 84
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=1.6e+02 Score=30.58 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCcEEEeccCCCCCC-------CCCCcCcccHHHHHHHHHHh-----CCcEEEEecCC
Q 006605 290 VAAIDQAVHDGVDILSLSVGPNSPP-------ATTKTTFLNPFDVTLLAAVK-----AGVFVAQAAGN 345 (639)
Q Consensus 290 ~~ai~~a~~~g~dVIn~SlG~~~~~-------~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN 345 (639)
+.-++||+++|.+||+ |.|..... .|-.....+|+++++++-.+ -||.||+|+--
T Consensus 180 VdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 180 VDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLEK 246 (430)
T ss_pred hHHHHHHHHcCCceEe-ccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEecCC
Confidence 5668899999999996 45543221 11112346889888866543 48899998644
No 85
>COG5510 Predicted small secreted protein [Function unknown]
Probab=23.24 E-value=86 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=9.7
Q ss_pred CchhhHHHHHHHHHHHHHh
Q 006605 1 MIAAEFLCIFIVLFTIFIL 19 (639)
Q Consensus 1 m~~~~~~~~l~l~~~~~~~ 19 (639)
|++.+++++++++..+++.
T Consensus 2 mk~t~l~i~~vll~s~lla 20 (44)
T COG5510 2 MKKTILLIALVLLASTLLA 20 (44)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444
No 86
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=21.48 E-value=3e+02 Score=28.33 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCCCCcCcccHHHHHHHHHHhCCcEEEEec
Q 006605 283 GGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAA 343 (639)
Q Consensus 283 ~~~~s~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 343 (639)
......-++.++.++..|+|.|=++-.. ...+..+++++.++||.||.=-
T Consensus 74 ~~d~~~Q~~~i~~~ia~~~daIiv~~~d-----------~~~~~~~v~~a~~aGIpVv~~d 123 (322)
T COG1879 74 QNDVAKQIAQIEDLIAQGVDAIIINPVD-----------PDALTPAVKKAKAAGIPVVTVD 123 (322)
T ss_pred ccChHHHHHHHHHHHHcCCCEEEEcCCC-----------hhhhHHHHHHHHHCCCcEEEEe
Confidence 4556667888899999999998887654 3577889999999999888543
Done!