Query 006606
Match_columns 639
No_of_seqs 464 out of 2311
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 11:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5226 CEG1 mRNA capping enzy 100.0 5.1E-61 1.1E-65 477.3 15.5 307 305-623 41-381 (404)
2 KOG2386 mRNA capping enzyme, g 100.0 3.1E-55 6.7E-60 461.1 19.4 345 83-437 4-391 (393)
3 PF01331 mRNA_cap_enzyme: mRNA 100.0 3.4E-44 7.4E-49 353.8 13.5 190 311-509 1-192 (192)
4 cd07895 Adenylation_mRNA_cappi 100.0 2.9E-39 6.3E-44 324.2 19.8 199 301-510 16-215 (215)
5 cd06846 Adenylation_DNA_ligase 99.9 5.6E-27 1.2E-31 229.2 18.3 178 308-510 1-182 (182)
6 KOG1719 Dual specificity phosp 99.9 4.7E-26 1E-30 208.2 11.6 171 67-265 2-173 (183)
7 cd07898 Adenylation_DNA_ligase 99.9 4E-24 8.7E-29 212.4 16.3 163 323-511 18-201 (201)
8 PTZ00242 protein tyrosine phos 99.9 1E-23 2.2E-28 202.9 16.5 147 100-264 14-160 (166)
9 cd07903 Adenylation_DNA_ligase 99.9 9.2E-23 2E-27 206.2 18.0 167 321-513 28-224 (225)
10 PTZ00393 protein tyrosine phos 99.9 7E-23 1.5E-27 203.9 16.4 140 102-264 92-231 (241)
11 cd07897 Adenylation_DNA_ligase 99.9 3.8E-22 8.3E-27 199.1 15.8 161 323-511 21-205 (207)
12 KOG1720 Protein tyrosine phosp 99.9 1.5E-21 3.3E-26 187.9 14.9 148 101-260 58-206 (225)
13 cd07906 Adenylation_DNA_ligase 99.9 1.4E-21 3E-26 192.5 15.0 157 325-510 15-189 (190)
14 cd07901 Adenylation_DNA_ligase 99.9 1.6E-21 3.4E-26 194.8 15.0 157 325-511 24-207 (207)
15 cd07900 Adenylation_DNA_ligase 99.9 3.1E-21 6.7E-26 194.1 15.9 165 321-511 26-218 (219)
16 cd07905 Adenylation_DNA_ligase 99.9 4.8E-21 1E-25 189.4 14.9 158 325-511 15-193 (194)
17 PF03919 mRNA_cap_C: mRNA capp 99.9 7.9E-22 1.7E-26 175.0 7.5 58 551-608 48-105 (105)
18 cd08039 Adenylation_DNA_ligase 99.9 9.2E-21 2E-25 192.1 16.1 182 312-511 4-234 (235)
19 PRK07636 ligB ATP-dependent DN 99.8 2.1E-20 4.5E-25 194.1 18.1 161 325-520 17-194 (275)
20 TIGR02779 NHEJ_ligase_lig DNA 99.8 1.5E-20 3.3E-25 197.6 16.1 169 325-521 11-192 (298)
21 PRK08224 ligC ATP-dependent DN 99.8 1.9E-20 4.1E-25 200.1 16.2 163 326-520 24-207 (350)
22 PRK09247 ATP-dependent DNA lig 99.8 1.4E-20 3E-25 212.0 15.7 170 323-521 222-417 (539)
23 cd07902 Adenylation_DNA_ligase 99.8 2.7E-20 5.8E-25 186.6 14.7 158 326-511 34-212 (213)
24 PRK09633 ligD ATP-dependent DN 99.8 6.3E-20 1.4E-24 207.9 18.1 277 325-623 15-362 (610)
25 TIGR00574 dnl1 DNA ligase I, A 99.8 5.7E-20 1.2E-24 206.8 16.3 166 327-520 188-385 (514)
26 PHA02587 30 DNA ligase; Provis 99.8 5.5E-19 1.2E-23 196.9 22.9 175 319-521 145-371 (488)
27 cd09232 Snurportin-1_C C-termi 99.8 1.8E-19 4E-24 175.7 16.3 163 325-511 20-186 (186)
28 smart00195 DSPc Dual specifici 99.8 1E-19 2.2E-24 169.6 13.7 113 139-260 25-137 (138)
29 PF00782 DSPc: Dual specificit 99.8 7.1E-20 1.5E-24 169.4 11.2 116 139-260 17-132 (133)
30 PRK03180 ligB ATP-dependent DN 99.8 1.5E-19 3.3E-24 202.1 15.7 163 326-520 204-389 (508)
31 PF01068 DNA_ligase_A_M: ATP d 99.8 3E-19 6.6E-24 177.0 13.4 166 320-509 14-202 (202)
32 PLN03113 DNA ligase 1; Provisi 99.8 4.7E-19 1E-23 203.7 16.7 175 320-520 385-591 (744)
33 PRK01109 ATP-dependent DNA lig 99.8 4.4E-19 9.6E-24 202.2 15.9 166 326-520 248-445 (590)
34 PRK09632 ATP-dependent DNA lig 99.8 1.6E-18 3.4E-23 199.3 18.0 165 323-520 474-650 (764)
35 KOG1718 Dual specificity phosp 99.8 1.3E-18 2.9E-23 161.7 12.7 118 139-265 41-158 (198)
36 PRK05972 ligD ATP-dependent DN 99.8 2.9E-18 6.3E-23 198.9 16.5 165 326-520 249-426 (860)
37 COG1793 CDC9 ATP-dependent DNA 99.8 3.4E-18 7.3E-23 187.9 15.6 165 327-520 134-321 (444)
38 PHA00454 ATP-dependent DNA lig 99.8 9E-18 1.9E-22 177.8 17.0 182 308-520 6-228 (315)
39 cd00127 DSPc Dual specificity 99.8 1.1E-17 2.3E-22 155.6 13.9 113 139-258 26-138 (139)
40 PRK09125 DNA ligase; Provision 99.7 1.2E-16 2.6E-21 166.4 19.1 207 326-580 43-281 (282)
41 cd07896 Adenylation_kDNA_ligas 99.7 5.7E-17 1.2E-21 157.5 11.9 143 325-510 15-174 (174)
42 KOG2836 Protein tyrosine phosp 99.7 3.4E-16 7.4E-21 140.3 13.8 136 102-258 17-152 (173)
43 KOG1717 Dual specificity phosp 99.7 1.8E-16 3.9E-21 157.0 11.8 118 139-264 196-314 (343)
44 PRK12361 hypothetical protein; 99.7 3.5E-16 7.5E-21 178.0 15.7 120 139-264 119-239 (547)
45 KOG1716 Dual specificity phosp 99.7 4.8E-16 1E-20 162.6 13.7 122 139-266 99-220 (285)
46 TIGR02776 NHEJ_ligase_prk DNA 99.6 1.2E-14 2.6E-19 163.5 13.9 139 352-521 1-153 (552)
47 KOG2386 mRNA capping enzyme, g 99.6 5.8E-16 1.3E-20 164.3 1.8 288 302-608 37-350 (393)
48 KOG2283 Clathrin coat dissocia 99.6 2E-14 4.2E-19 156.5 12.6 148 100-259 18-171 (434)
49 KOG0966 ATP-dependent DNA liga 99.5 4.4E-14 9.5E-19 157.8 13.6 174 318-514 242-441 (881)
50 COG2453 CDC14 Predicted protei 99.5 3E-13 6.5E-18 132.2 12.7 101 153-258 62-163 (180)
51 KOG0967 ATP-dependent DNA liga 99.3 1.5E-11 3.3E-16 135.0 12.3 176 319-520 358-565 (714)
52 PF05706 CDKN3: Cyclin-depende 99.2 3.1E-11 6.8E-16 114.3 9.0 101 128-235 61-168 (168)
53 PF03162 Y_phosphatase2: Tyros 99.2 9E-11 2E-15 112.9 9.4 101 132-241 26-130 (164)
54 cd07894 Adenylation_RNA_ligase 99.1 1.3E-09 2.7E-14 116.4 13.8 147 326-500 48-205 (342)
55 smart00012 PTPc_DSPc Protein t 99.1 1.6E-09 3.4E-14 95.0 11.8 91 166-258 5-102 (105)
56 smart00404 PTPc_motif Protein 99.1 1.6E-09 3.4E-14 95.0 11.8 91 166-258 5-102 (105)
57 TIGR01244 conserved hypothetic 98.9 1.7E-08 3.6E-13 94.2 13.4 107 121-241 11-124 (135)
58 cd00047 PTPc Protein tyrosine 98.8 2.1E-08 4.5E-13 101.7 11.0 92 164-257 130-227 (231)
59 PRK15375 pathogenicity island 98.7 7.4E-08 1.6E-12 105.4 11.5 99 164-262 423-529 (535)
60 PLN02727 NAD kinase 98.7 9.9E-08 2.1E-12 110.5 12.2 99 122-230 266-370 (986)
61 smart00194 PTPc Protein tyrosi 98.7 1.1E-07 2.4E-12 98.0 10.7 83 171-257 166-254 (258)
62 PF14566 PTPlike_phytase: Inos 98.3 8.6E-07 1.9E-11 84.1 6.5 66 154-225 83-148 (149)
63 PF04273 DUF442: Putative phos 98.3 2.1E-06 4.6E-11 77.1 8.3 85 124-221 14-105 (110)
64 PHA02740 protein tyrosine phos 98.3 4.8E-06 1E-10 87.8 11.8 87 171-257 186-282 (298)
65 PF13350 Y_phosphatase3: Tyros 98.2 2.7E-06 5.9E-11 81.9 7.7 95 139-239 41-161 (164)
66 PF00102 Y_phosphatase: Protei 98.2 8.6E-06 1.9E-10 81.9 11.1 80 176-258 147-232 (235)
67 PHA02742 protein tyrosine phos 98.2 8.8E-06 1.9E-10 86.2 11.6 87 171-257 191-290 (303)
68 PHA02747 protein tyrosine phos 98.2 9.5E-06 2E-10 86.3 11.5 85 171-255 192-288 (312)
69 PHA02746 protein tyrosine phos 98.2 1.1E-05 2.4E-10 86.2 11.1 88 171-258 210-309 (323)
70 KOG1572 Predicted protein tyro 98.0 5.7E-05 1.2E-09 75.3 11.8 134 113-261 66-205 (249)
71 KOG3132 m3G-cap-specific nucle 98.0 0.00012 2.7E-09 72.6 13.5 154 326-503 116-271 (325)
72 KOG0790 Protein tyrosine phosp 98.0 6.7E-06 1.5E-10 87.7 5.0 91 165-256 416-514 (600)
73 PHA02738 hypothetical protein; 98.0 4.4E-05 9.5E-10 81.5 11.1 87 171-257 187-288 (320)
74 COG2365 Protein tyrosine/serin 97.8 4.6E-05 1E-09 78.4 8.2 46 201-246 136-181 (249)
75 KOG0792 Protein tyrosine phosp 97.8 5.3E-05 1.2E-09 88.5 8.5 89 171-262 1036-1133(1144)
76 COG3453 Uncharacterized protei 97.8 0.00039 8.5E-09 62.3 11.9 108 118-239 9-123 (130)
77 COG5599 PTP2 Protein tyrosine 97.5 0.00013 2.8E-09 73.8 5.8 88 171-263 193-294 (302)
78 TIGR01209 RNA ligase, Pab1020 97.4 0.0019 4.1E-08 69.4 13.1 180 305-518 57-245 (374)
79 KOG0791 Protein tyrosine phosp 97.4 0.00071 1.5E-08 71.5 9.0 94 168-264 257-355 (374)
80 COG5350 Predicted protein tyro 97.2 0.0053 1.1E-07 57.5 11.3 109 139-253 31-146 (172)
81 KOG0789 Protein tyrosine phosp 97.0 0.0023 4.9E-08 70.5 9.3 58 200-257 298-361 (415)
82 COG1423 ATP-dependent DNA liga 96.9 0.015 3.3E-07 61.2 13.2 144 323-495 85-236 (382)
83 PF14671 DSPn: Dual specificit 96.4 0.009 2E-07 56.0 6.8 72 171-244 38-113 (141)
84 KOG0793 Protein tyrosine phosp 96.0 0.1 2.2E-06 59.3 13.7 86 168-256 897-988 (1004)
85 PF01653 DNA_ligase_aden: NAD- 94.4 0.41 8.9E-06 51.1 11.8 160 327-511 108-313 (315)
86 KOG4228 Protein tyrosine phosp 94.4 0.061 1.3E-06 64.4 5.9 82 171-255 703-789 (1087)
87 PF04179 Init_tRNA_PT: Initiat 94.3 0.66 1.4E-05 51.8 13.6 115 138-257 316-448 (451)
88 KOG4228 Protein tyrosine phosp 93.7 0.11 2.5E-06 62.2 6.4 81 177-258 995-1080(1087)
89 PRK07956 ligA NAD-dependent DN 92.9 4.7 0.0001 47.5 17.9 162 327-514 109-318 (665)
90 cd00114 LIGANc NAD+ dependent 92.6 2.6 5.5E-05 44.9 14.1 159 327-511 102-306 (307)
91 PF09414 RNA_ligase: RNA ligas 92.3 0.32 7E-06 47.5 6.5 102 327-429 2-128 (186)
92 KOG3673 FtsJ-like RNA methyltr 92.1 0.46 1E-05 52.9 7.8 156 305-485 570-732 (845)
93 PRK14351 ligA NAD-dependent DN 91.2 8.4 0.00018 45.6 17.5 157 326-513 132-339 (689)
94 TIGR00575 dnlj DNA ligase, NAD 91.1 12 0.00026 44.1 18.6 158 327-514 97-306 (652)
95 PRK14350 ligA NAD-dependent DN 90.9 9.6 0.00021 44.9 17.5 162 327-514 111-315 (669)
96 PRK08097 ligB NAD-dependent DN 90.8 8.2 0.00018 44.4 16.5 157 327-514 119-310 (562)
97 smart00532 LIGANc Ligase N fam 90.5 3.1 6.7E-05 46.6 12.5 163 327-513 104-312 (441)
98 PF05098 LEF-4: Late expressio 90.5 7.3 0.00016 43.2 15.0 206 325-585 233-450 (450)
99 TIGR02307 RNA_lig_RNL2 RNA lig 89.1 2.4 5.2E-05 45.3 9.7 107 323-429 22-144 (325)
100 PHA02142 putative RNA ligase 87.6 4.8 0.0001 43.7 11.0 105 324-430 167-298 (366)
101 cd01518 RHOD_YceA Member of th 84.4 5.8 0.00013 34.3 8.2 29 199-230 59-87 (101)
102 PLN02160 thiosulfate sulfurtra 79.8 6 0.00013 36.8 6.9 29 199-230 79-107 (136)
103 cd01523 RHOD_Lact_B Member of 78.1 15 0.00033 31.5 8.6 29 199-230 59-87 (100)
104 PRK01415 hypothetical protein; 73.3 27 0.00059 36.0 10.1 105 101-230 93-197 (247)
105 COG0272 Lig NAD-dependent DNA 72.0 81 0.0018 37.0 14.4 160 326-515 109-319 (667)
106 PF00581 Rhodanese: Rhodanese- 71.7 24 0.00051 30.4 8.2 91 126-230 1-98 (113)
107 KOG4471 Phosphatidylinositol 3 70.1 8.3 0.00018 43.9 5.8 30 196-225 369-398 (717)
108 PF06602 Myotub-related: Myotu 67.0 20 0.00044 39.0 8.0 24 199-222 229-252 (353)
109 PRK00142 putative rhodanese-re 66.9 26 0.00055 37.5 8.7 87 122-230 111-197 (314)
110 cd01522 RHOD_1 Member of the R 58.5 49 0.0011 29.6 7.7 29 199-230 62-90 (117)
111 cd01448 TST_Repeat_1 Thiosulfa 57.1 25 0.00055 31.3 5.7 31 198-230 76-106 (122)
112 TIGR03865 PQQ_CXXCW PQQ-depend 56.3 1.4E+02 0.0031 28.5 11.0 30 199-230 114-143 (162)
113 cd01519 RHOD_HSP67B2 Member of 55.5 38 0.00082 29.1 6.4 29 199-230 64-92 (106)
114 COG0607 PspE Rhodanese-related 52.0 19 0.0004 31.2 3.8 29 199-230 59-87 (110)
115 TIGR02306 RNA_lig_DRB0094 RNA 51.9 1.2E+02 0.0025 33.0 10.4 104 325-430 158-277 (341)
116 PRK05320 rhodanese superfamily 46.2 1.5E+02 0.0033 30.6 10.1 89 123-230 110-201 (257)
117 cd01443 Cdc25_Acr2p Cdc25 enzy 45.7 1.6E+02 0.0035 25.8 8.9 18 200-217 65-82 (113)
118 cd01533 4RHOD_Repeat_2 Member 44.3 30 0.00066 30.2 4.0 27 200-229 65-91 (109)
119 PF10640 Pox_ATPase-GT: mRNA c 43.4 73 0.0016 33.6 6.9 66 314-389 217-282 (313)
120 cd01530 Cdc25 Cdc25 phosphatas 43.3 1.2E+02 0.0027 27.2 7.9 25 199-225 66-91 (121)
121 PF03668 ATP_bind_2: P-loop AT 41.9 40 0.00086 35.5 4.9 38 182-219 216-260 (284)
122 PRK05569 flavodoxin; Provision 40.3 2.3E+02 0.005 25.7 9.5 114 132-261 24-138 (141)
123 KOG1089 Myotubularin-related p 38.5 51 0.0011 37.9 5.4 21 200-220 343-363 (573)
124 COG1660 Predicted P-loop-conta 37.3 44 0.00096 34.8 4.3 40 181-220 216-262 (286)
125 TIGR03167 tRNA_sel_U_synt tRNA 36.9 92 0.002 33.3 6.8 28 201-230 74-101 (311)
126 cd05567 PTS_IIB_mannitol PTS_I 35.6 36 0.00078 28.8 2.9 19 202-221 1-19 (87)
127 PRK05600 thiamine biosynthesis 35.1 1E+02 0.0023 33.7 7.1 83 124-230 272-358 (370)
128 PRK05416 glmZ(sRNA)-inactivati 34.9 57 0.0012 34.4 4.9 39 181-219 218-263 (288)
129 PRK07411 hypothetical protein; 33.0 1E+02 0.0022 33.9 6.7 28 200-230 341-368 (390)
130 cd01532 4RHOD_Repeat_1 Member 31.7 68 0.0015 27.1 4.0 30 200-230 49-78 (92)
131 COG1054 Predicted sulfurtransf 28.9 3.3E+02 0.0071 29.0 9.0 104 102-229 94-197 (308)
132 cd01447 Polysulfide_ST Polysul 27.5 68 0.0015 27.2 3.3 29 199-230 59-87 (103)
133 KOG3824 Huntingtin interacting 27.2 2.3E+02 0.005 30.4 7.5 67 163-230 318-397 (472)
134 cd01529 4RHOD_Repeats Member o 26.8 72 0.0016 27.0 3.4 29 199-230 54-82 (96)
135 cd01534 4RHOD_Repeat_3 Member 26.8 82 0.0018 26.7 3.7 28 200-230 55-82 (95)
136 PF04343 DUF488: Protein of un 25.9 3.3E+02 0.0072 24.4 7.7 44 128-173 3-54 (122)
137 cd01520 RHOD_YbbB Member of th 25.9 85 0.0018 28.4 3.9 31 198-230 83-113 (128)
138 COG2089 SpsE Sialic acid synth 25.9 1.7E+02 0.0036 31.5 6.3 77 129-215 94-189 (347)
139 cd01528 RHOD_2 Member of the R 25.2 1.6E+02 0.0035 25.0 5.4 28 200-230 57-84 (101)
140 PRK05568 flavodoxin; Provision 24.3 5.3E+02 0.012 23.3 10.1 114 130-261 22-138 (142)
141 COG0696 GpmI Phosphoglyceromut 24.2 3.2E+02 0.0068 31.1 8.3 173 78-270 46-236 (509)
142 PF02673 BacA: Bacitracin resi 23.4 73 0.0016 33.1 3.2 27 209-237 159-185 (259)
143 cd01526 RHOD_ThiF Member of th 22.9 1E+02 0.0022 27.6 3.7 28 199-229 70-97 (122)
144 PRK13352 thiamine biosynthesis 22.3 4.3E+02 0.0093 29.4 8.7 95 126-226 75-198 (431)
145 PF03861 ANTAR: ANTAR domain; 21.2 1.3E+02 0.0028 23.3 3.5 26 216-241 15-40 (56)
146 PF13292 DXP_synthase_N: 1-deo 21.0 1.5E+02 0.0033 30.9 4.9 41 157-209 229-269 (270)
147 cd01525 RHOD_Kc Member of the 21.0 1.2E+02 0.0026 25.9 3.7 27 201-230 65-91 (105)
No 1
>COG5226 CEG1 mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=100.00 E-value=5.1e-61 Score=477.35 Aligned_cols=307 Identities=34% Similarity=0.477 Sum_probs=253.8
Q ss_pred CCCCCccccccchhhhhhhcccceeeeecCceeEEEEEEECC------EEEEEeCCCccccccCcCCC-cCCc-cccccc
Q 006606 305 MQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITID------GCYLIDRCFNFRRVQMRFPC-RNSN-EGLGEK 376 (639)
Q Consensus 305 ~~FPGsqPVsl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~------~vyLidR~~~~~~v~~~FP~-~~~~-~~~~~~ 376 (639)
..|||||||||+.+|++.|..++|+||||+||+|+||+++.+ ++|++||+|+||.++-.||. .... +| +.
T Consensus 41 ~tFpGsqPVsf~~~~i~~Ll~~dy~VCEKsDGvR~Ll~vte~p~tg~~~~y~~DR~nnfY~v~~~f~p~~~~~k~g--e~ 118 (404)
T COG5226 41 ETFPGSQPVSFTLDNIGLLLNNDYLVCEKSDGVRALLLVTEEPVTGAFRGYFYDRRNNFYEVHTSFPPCSTVLKDG--EV 118 (404)
T ss_pred ccCCCCcceeeehhhHHHHHhCCeEEEEccCCeEEEEEEEecccCCCcceEEEeccCceEEeccccCCcccccccC--cE
Confidence 689999999999999999999999999999999999999853 69999999999988644543 3222 22 35
Q ss_pred CCCCeEeeEEEEEecCCCCCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006606 377 THHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 456 (639)
Q Consensus 377 ~~~~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~p 456 (639)
.+.+|+||||+|.|..+.++-++++|++||||+++|.-++.++.++|++.|++++.+|+...+. ..+ .+....|
T Consensus 119 l~~dtlldgelV~d~~p~~k~~qlryl~fdcLa~~g~~~~~~~~s~Rl~~l~Ke~~kp~~~~r~-----s~~-~~~~~fp 192 (404)
T COG5226 119 LLEDTLLDGELVFDCLPYEKVPQLRYLLFDCLAYAGMFVERMEKSERLKTLQKEDEKPRERKRV-----SIE-IDSGSFP 192 (404)
T ss_pred EeccceecceEEEEeccccchHHHHHHHHHHhhhcceeEeecchhhHHHHhhhhhcccHhhhhh-----eee-ccccccc
Confidence 6899999999999988776546799999999999999999999999999999999999765442 111 2234679
Q ss_pred cEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEEEecC-----------
Q 006606 457 FRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDD----------- 525 (639)
Q Consensus 457 f~I~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF~l~~~~~----------- 525 (639)
|.+.+|.|...+++-++++. ||.+.|++|||||||.+.||+.|++..+|||||.++|||||++.+...
T Consensus 193 f~~s~K~M~~syg~~ki~k~-ip~L~HgnDGLIFTp~~~PY~~Gkd~~lLKWKP~~~NTiDF~lvl~~~~~e~~Dyny~~ 271 (404)
T COG5226 193 FHFSVKQMLKSYGFWKIYKK-IPELKHGNDGLIFTPADEPYSVGKDGALLKWKPASLNTIDFRLVLHKKWSEVDDYNYVC 271 (404)
T ss_pred eeeeHHHHHhhhhHHHHHhh-cccccCCCCceEeccCCCCcccCccceeeecCccccCceeeeeeeccccccccCcceee
Confidence 99999999999999999964 799999999999999999999999999999999999999999977521
Q ss_pred -CceeEEEEeCCeee-eecCceeEecC-------CCCCCCCceEEEEEEeCCCCeeEEEEEeCCCCCCChHHHHHHHHHh
Q 006606 526 -DRQLLYVFERGKKK-LMEGSSVEFTD-------REPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRS 596 (639)
Q Consensus 526 -~~~~L~~~~~g~~~-~~~~~~~~f~~-------~~~~~~dg~IvEc~~d~~~~~W~~~R~R~DK~~pN~~~tv~~v~~S 596 (639)
....|+|+.+.+.. ++.... ..| ..-..+.++||||+.+. .|.|+++|+|+||.+|||++||.+|++|
T Consensus 272 ~p~f~l~Vw~gRk~yrfFa~~~--v~d~ew~~lk~~~~pl~~rivEc~l~~-e~~W~~lrfRdDK~~~NhisvV~~VLeS 348 (404)
T COG5226 272 SPKFGLDVWFGRKTYRFFASGE--VIDGEWCELKYDCDPLYWRIVECVLKK-EGAWKLLRFRDDKDTPNHISVVCNVLES 348 (404)
T ss_pred cccccccEEecccceeeeeeeE--echHHHHHHhhhcccchhhHHHHHhcc-CCceEEEEeecCCCCCchhhHHHHHHHH
Confidence 23467787754432 222211 112 33467899999999985 4599999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHhc------Cccchhhc
Q 006606 597 IRDNITEEVLLNEIQEIIR------LPMYADRI 623 (639)
Q Consensus 597 I~d~It~e~L~~~i~~i~~------~~~~~~~~ 623 (639)
|+|+||.|+|..+..-|+. .||...|.
T Consensus 349 i~D~vs~EdL~~~~~vire~~~~R~k~~~~~R~ 381 (404)
T COG5226 349 IRDNVSIEDLSTFYSVIRENSKRREKAMRRGRP 381 (404)
T ss_pred HhccCcHHHHHHHHHHHHHHHHhhhhccccCCC
Confidence 9999999999998877633 56665554
No 2
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=100.00 E-value=3.1e-55 Score=461.08 Aligned_cols=345 Identities=44% Similarity=0.744 Sum_probs=298.2
Q ss_pred CCCCCCCCccCCCCCCcc-cCceeecCCCCccccccCCCCCC-CCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhh
Q 006606 83 RNKLPPGWLDCPPFGQEI-GGCIIPSKVPLSEFFNDCIPPGK-RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLK 160 (639)
Q Consensus 83 ~~~~p~~W~~~~~~g~~I-~~~fip~K~Pl~~~~~~~i~~~~-~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~ 160 (639)
...+|.+|++||+.|+++ .++|||+|+||++.++++++++. +|++.++++++++++..||++||||++.+||+..+++
T Consensus 4 ~~~lp~~w~~~p~~G~~~~~~rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~ 83 (393)
T KOG2386|consen 4 PGELPPRWLDCPPVGAVIDDTRFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELE 83 (393)
T ss_pred cccCCcccccCCCCCCccccceEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceeeeecccccc
Confidence 348999999999999964 68999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHh
Q 006606 161 KEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAE 240 (639)
Q Consensus 161 ~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~ 240 (639)
..|+.|+++.|.|++.+|+.+.+..|+..+..|......++..|+|||+||+||||+|||+|||...+|+..+|++.|+.
T Consensus 84 ~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~ 163 (393)
T KOG2386|consen 84 ERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFAD 163 (393)
T ss_pred ccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCCccCCHHHHHHHHHHHhhcCCCCCCCCCCCcccccc--CCCCCCCCCCCCCC-------C----Cccccc-------
Q 006606 241 VRPPGIYKNEYIEALYTFYHEKRLDSTPCPSTPEWKREL--DLNGEAVPDDDDDG-------V----PAAALH------- 300 (639)
Q Consensus 241 ~Rp~~i~~~~~l~~L~~~y~~~~~~~~~~p~~P~W~~~~--~~~~~~~~~~~~~~-------~----~~~~~~------- 300 (639)
+||++++++.|+.+|+.+|+...+..+++|..|.|+++. ..++..++.+|+.. + ..+.+.
T Consensus 164 ~r~~gi~k~dyi~~L~~~~~~~~p~~vs~p~~~~~~~~~~~~~~~~~~~~~Dg~i~t~~~~pg~~~g~~~~~~k~k~~~~ 243 (393)
T KOG2386|consen 164 ARPPGIEKQDYIDALYSRYHDIFPFKVSCPSMPDWKRSIKLKKPVHKLHGNDGLIFTPAEIPGSKNGKQEALLKWKPFSL 243 (393)
T ss_pred hCCCccCchHHHHHHhhcccccccccccCCCCcchhhhhhhccccccccccCCCcCCcccCccccccchhhhhcCCchhc
Confidence 999999999999999999999998889999999999943 33333332222210 0 000000
Q ss_pred -------------------CCCCCCCCCccccccchhhhhhhcccceeeeecCceeEEEEEEECCE-EEEEeCCCc-ccc
Q 006606 301 -------------------GRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDG-CYLIDRCFN-FRR 359 (639)
Q Consensus 301 -------------------~~~~~~FPGsqPVsl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~-~~~ 359 (639)
.....++ |+|||| |.++..+....|.++||+||+||++++++++ +|++||... +..
T Consensus 244 n~~~~~~~~~~~q~~~~~l~~~~~~~-g~~~~~--r~~~~~~~~~~y~~~We~dg~~~~~L~~~~~~~~~~dR~~~~~~~ 320 (393)
T KOG2386|consen 244 NTIDFGVKLEKPQPELGDLQCKRKNE-GAQPVS--RENYKLLVFEYYEASWEADGTRYMMLIDGDGEYYDFDRWRFVKGR 320 (393)
T ss_pred CCcccceeecCCCCCccchhhhhccc-ccCCcc--ccchhhhhhhhhhhhhcccCcEEEEEecCCceeEechhhhHHHhh
Confidence 1223444 999999 9999999999999999999999999999877 688888765 334
Q ss_pred ccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCCCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCcccc
Q 006606 360 VQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNY 437 (639)
Q Consensus 360 v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~ 437 (639)
-+++||...+.. +.+..||+|||+++|+.... ..+||++||++.+|++++...||. |++++.++|++|+..
T Consensus 321 ~~~~~~~~~~~~----~~~~~tl~dge~~lD~l~~~--~~~r~l~Yd~~r~n~~~v~~~~f~-r~~~~~~evi~~r~~ 391 (393)
T KOG2386|consen 321 ENLRKIREDSDT----KVLHQTLLDGEMILDRLKEE--AIPRYLIYDMVRFNSQKVEKRPFS-RWQIIEKEVIDPREL 391 (393)
T ss_pred hhhhcccccccc----hhhhhhhcccceeccccccc--cchhheeeeeeeccCcccccCcch-HHHHHHHHhcCchhc
Confidence 467776543321 34688999999999886554 368999999999999999999999 999999999998753
No 3
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 3RTX_A 3KYH_D 3S24_G 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=100.00 E-value=3.4e-44 Score=353.78 Aligned_cols=190 Identities=46% Similarity=0.824 Sum_probs=156.8
Q ss_pred cccccchhhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCcccccc-CcCCCcCCcccccccCCCCeEeeEEEEE
Q 006606 311 HPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQ-MRFPCRNSNEGLGEKTHHFTLLDGEMII 389 (639)
Q Consensus 311 qPVsl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~-~~FP~~~~~~~~~~~~~~~tlLDGElV~ 389 (639)
|||||+|+|++.|.+++|+||||+||+||||+++++++|||||+++++.++ +.||..... .....+.+||||||||.
T Consensus 1 qPVS~~r~~l~~l~~~~Y~V~eKaDG~Ryll~i~~~~~ylidr~~~~~~v~~~~~p~~~~~--~~~~~~~~TLLDGElV~ 78 (192)
T PF01331_consen 1 QPVSFSRKNLQLLQQKDYFVCEKADGTRYLLLITDNGVYLIDRKNNVFKVDNLHFPSKKDS--SDGRHHQDTLLDGELVL 78 (192)
T ss_dssp EEEE--TTGHHHHHHS-EEEEEEESSEEEEEEEEEEEEEEEETTS-EEEESSST-ECTTC----TTCEGCSEEEEEEEEE
T ss_pred CCcccchhhHHHHhhCCcEEEECCCCcEEEEEEecceEEEEeCCCcEEEecCccccccccc--ccccccCCEEEEEEEEc
Confidence 899999999999999999999999999999999999999999999998887 899976431 01234789999999999
Q ss_pred ecCCCCCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechh
Q 006606 390 DKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLST 469 (639)
Q Consensus 390 d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~ 469 (639)
|..++ ...++|+|||||+++|++++++||.+|+++|++.|+.|+.... ..+..+..+.+||.++.|+|++++.
T Consensus 79 d~~~~--~~~~~flifD~l~~~G~~v~~~~~~~Rl~~l~~~i~~p~~~~~-----~~~~~~~~~~~pf~i~~K~~~~~~~ 151 (192)
T PF01331_consen 79 DKDPG--EKKPRFLIFDILAINGQNVTDKPLDERLAYLQEEIIEPRKNAE-----LKSGIIKKKKEPFSIRIKDFFPIYQ 151 (192)
T ss_dssp EECTT--CEEEEEEEEEEEEETTEEGCCSBHHHHHHHHHHHTHHHHHHHH-----CHTTSCTCTTSSSEEEE---EEGGG
T ss_pred ccCCC--CCceEEEEEeeehhCCcEeccCCHHHHHHHHHHHHHHHHHhhc-----cccccccccccceeeeccccHHHHh
Confidence 98765 3689999999999999999999999999999999999986542 0123344567899999999999999
Q ss_pred HHH-HHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEe
Q 006606 470 VNK-LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWK 509 (639)
Q Consensus 470 ~~~-l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWK 509 (639)
++. +...+++.++|++|||||||.+.||++|||..+||||
T Consensus 152 ~~~~~~~~~~~~l~h~~DGLIFtp~~~pY~~Gt~~~llKWK 192 (192)
T PF01331_consen 152 IEKLLFEEFIPKLPHETDGLIFTPVNTPYVPGTCPNLLKWK 192 (192)
T ss_dssp HHHHCHHCCCCCTTSTEEEEEEEESSSB--SEEEEEEEEE-
T ss_pred hHHHHHHHhhccCCCCCCEEEEecCCCCccCCCCCccEeeC
Confidence 998 5567889999999999999999999999999999998
No 4
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes. RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues.
Probab=100.00 E-value=2.9e-39 Score=324.22 Aligned_cols=199 Identities=47% Similarity=0.762 Sum_probs=166.3
Q ss_pred CCCCCCCCCccccccchhhhhhhcccceeeeecCceeEEEEEEEC-CEEEEEeCCCccccccCcCCCcCCcccccccCCC
Q 006606 301 GRGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITI-DGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHH 379 (639)
Q Consensus 301 ~~~~~~FPGsqPVsl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~-~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~ 379 (639)
.++..+|||||||||++++++.+...+|+||||+||+|++|++.+ +++||+||+++++.. .||....... ......
T Consensus 16 ~~~~~~FpG~~pvs~~~~~~~~~~~~~y~ve~K~DG~R~~l~~~~~~~v~l~sR~~~~~~~--~~~~~~~~~~-~~~~~~ 92 (215)
T cd07895 16 GWERGGFPGSQPVSFSRKNLELLKQNDYFVCEKSDGVRYLLLITGRGEVYLIDRKNDVFKV--PGLFFPRRKN-LEPHHQ 92 (215)
T ss_pred ccCCCCCCCCCccCccHHHHHHHhhCCeEEEEeEcCeEEEEEEecCCcEEEEeCCCCeEEe--ccccCCCccc-cccccc
Confidence 567889999999999999999999999999999999999999999 899999999986644 4444321100 012357
Q ss_pred CeEeeEEEEEecCCCCCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEE
Q 006606 380 FTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRV 459 (639)
Q Consensus 380 ~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I 459 (639)
+||||||||.+..++ ..+++|+|||||+++|+++++.||.+|+++|++.+..+...... .++ ......+|.|
T Consensus 93 ~~ilDGElv~~~~~~--~~~~~~~vFDiL~~~g~~l~~~pl~~R~~~L~~~i~~~~~~~~~-----~~~-~~~~~~~~~i 164 (215)
T cd07895 93 GTLLDGELVIDKVPG--KKRPRYLIFDILAFNGQSVTEKPLSERLKYIKKEVIEPRNELLK-----KGP-IDKAKEPFSV 164 (215)
T ss_pred CeeeEEEEEEEcCCC--ceEEEEEEEEEEEECCcCccCCCHHHHHHHHHHhchhHHHHhhh-----cCh-hhcCCCCeEE
Confidence 899999999987543 25789999999999999999999999999999988776533210 011 1234678999
Q ss_pred EecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEec
Q 006606 460 RRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 510 (639)
Q Consensus 460 ~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp 510 (639)
+.|+|++++.+..+++.+++.+.|++||||||+.++||.+||+..||||||
T Consensus 165 ~~k~~~~~~~~~~~~~~~~~~~~~~~EGlIfk~~~~~Y~~Gr~~~~lKwKp 215 (215)
T cd07895 165 RLKDFFPLYKIEKLFEKIIPKLPHENDGLIFTPNDEPYVPGTDKNLLKWKP 215 (215)
T ss_pred EecceEeHHhHHHHHHhccccCCCCCCCEEEccCCCCccCccCCcceeeCC
Confidence 999999999999999988788999999999999999999999999999998
No 5
>cd06846 Adenylation_DNA_ligase_like Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases. ATP-dependent polynucleotide ligases catalyze the phosphodiester bond formation of nicked nucleic acid substrates using ATP as a cofactor in a three step reaction mechanism. This family includes ATP-dependent DNA and RNA ligases. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent DNA ligases have a highly modular architecture, consisting of a unique arrangement of two or more discrete domains, including a DNA-binding domain, an adenylation or nucleotidyltransferase (NTase) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many active site residues. Together with the C-terminal OB-fold domain, it comprises a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family. The catalytic core contains six conserved seq
Probab=99.95 E-value=5.6e-27 Score=229.24 Aligned_cols=178 Identities=21% Similarity=0.287 Sum_probs=139.8
Q ss_pred CCccccccchhhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEE
Q 006606 308 PGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEM 387 (639)
Q Consensus 308 PGsqPVsl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGEl 387 (639)
|+++|+|+.+.+...+...+|+|++|+||+|+++++.+++++++||++..+ +..||.... ..+ ......++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~K~DG~R~~~~~~~~~v~~~sR~g~~~--~~~~~~~~~-~~~-~~~~~~~ilDGEl 76 (182)
T cd06846 1 PQLLNPILEEALSEYDEQDEYYVQEKYDGKRALIVALNGGVFAISRTGLEV--PLPSILIPG-REL-LTLKPGFILDGEL 76 (182)
T ss_pred CCccchhhhHHHhhccccCcEEEEEccCceEEEEEEcCCeEEEEeCCCCEE--ecccccccc-hHH-hccCCCeeEEEEE
Confidence 567899999997777788999999999999999999999999999999843 445554321 011 1235789999999
Q ss_pred EEecCCCCCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeec
Q 006606 388 IIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL 467 (639)
Q Consensus 388 V~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~ 467 (639)
|....+. ...+++|++||+|+++|.+++++||.+|+++|++.+..... ..++.+..+..++.
T Consensus 77 v~~~~~~-~~~~~~~~~FDil~~~~~~~~~~p~~eR~~~L~~~v~~~~~-----------------~~~~~i~~~~~~~~ 138 (182)
T cd06846 77 VVENREV-ANPKPTYYAFDVVPLSGVGLRDLPYSDRFAYLKSLLKEFEG-----------------LDPVKLVPLENAPS 138 (182)
T ss_pred EeccCCC-ccceeEEEEEEEEEECCCccccCCHHHHHHHHHHHhhhhcc-----------------CCceeEEEeecccc
Confidence 9976433 22578999999999999999999999999999997743211 12455666666665
Q ss_pred hh--HHHHHHHhcccccCCCceEEEEeCCCCC--ccCCCCCeEEEec
Q 006606 468 ST--VNKLLKEFIPKLSHDADGLVFQGWDDPY--VPRTHEGLLKWKY 510 (639)
Q Consensus 468 ~~--~~~l~~~~~~~l~h~~DGLIf~p~~spY--~~G~~~~llKWKp 510 (639)
.. +..+++. ...|+.||||||+.++|| .+|++..|+||||
T Consensus 139 ~~~~~~~~~~~---~~~~g~EGvi~K~~~s~Y~~~~gr~~~wlK~Kp 182 (182)
T cd06846 139 YDETLDDLLEK---LKKKGKEGLVFKHPDAPYKGRPGSSGNQLKLKP 182 (182)
T ss_pred cchHHHHHHHH---hhhcCCceEEEEcCCCCccccCCCCCceEeecC
Confidence 44 3556654 466999999999999999 9999999999998
No 6
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=4.7e-26 Score=208.18 Aligned_cols=171 Identities=18% Similarity=0.340 Sum_probs=138.1
Q ss_pred ceeeeeeecccccccCCCCCCCCCccCCCCCCcccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEE
Q 006606 67 AMHDQYYQNKNYKSYDRNKLPPGWLDCPPFGQEIGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVID 146 (639)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~p~~W~~~~~~g~~I~~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VId 146 (639)
.||++|||++.||+.+.+.--.+| | ++++-+--..+||.. .- ..++. ..+++.||.
T Consensus 2 ~ar~~fyptllynvv~~k~s~~~w--y-~~~~~v~~~~~~FrS----~~------------~~~i~-----ke~v~gvv~ 57 (183)
T KOG1719|consen 2 GARVLFYPTLLYNVVREKASAFRW--Y-RIDEFVILGAMPFRS----MD------------VPLIK-----KENVGGVVT 57 (183)
T ss_pred CceeeecHHHHHHHHHHHHhhhce--e-eecceEEEeeccccc----cc------------chHHH-----hcCCCeEEE
Confidence 589999999999999988767788 4 333322111244443 11 12332 258999999
Q ss_pred cCCCCCCC-CcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHH
Q 006606 147 LTNTTRYY-PTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMR 225 (639)
Q Consensus 147 Lt~~~~~y-~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~ 225 (639)
|+.+-.+- ...+|++.||+++.+|+.|...+|+.+.|.+.+ +||++....|+.|+|||+||.+||+||++||||+
T Consensus 58 ~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aV----eFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq 133 (183)
T KOG1719|consen 58 LNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAV----EFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQ 133 (183)
T ss_pred eCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHH----HHHHhccccCCeEEEEecCCCccchhhhhhhhhh
Confidence 98653332 235899999999999999998899999888764 7787777789999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhhcCCC
Q 006606 226 SQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLD 265 (639)
Q Consensus 226 ~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~ 265 (639)
+.+|++++|++.+++.||....+++|++.|.+||......
T Consensus 134 ~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~ 173 (183)
T KOG1719|consen 134 HKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVAN 173 (183)
T ss_pred hcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987654
No 7
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=99.91 E-value=4e-24 Score=212.45 Aligned_cols=163 Identities=21% Similarity=0.284 Sum_probs=123.9
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCC-------
Q 006606 323 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS------- 395 (639)
Q Consensus 323 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~------- 395 (639)
+....|++++|+||+|+++++.++++++++|++.. .+..||..... + ....++++||||||+...++.
T Consensus 18 ~~~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~~--~t~~~p~i~~~--~-~~~~~~~vLDGElv~~~~~~~~~f~~~~ 92 (201)
T cd07898 18 KKPAAAWVEDKYDGIRAQVHKDGGRVEIFSRSLED--ITDQFPELAAA--A-KALPHEFILDGEILAWDDNRGLPFSELF 92 (201)
T ss_pred hCCCeEEEEEeeceEEEEEEEeCCEEEEEcCCChh--chhhhhhHHHH--H-HhCCCCEEEEEEEEEEeCCCCCcHHHHH
Confidence 45568999999999999999999999999999983 36678865331 1 123578999999997432211
Q ss_pred -------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006606 396 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 462 (639)
Q Consensus 396 -------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 462 (639)
...++.|++||+|+++|++++++||.+|+++|++.+... . -.|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~vFDil~~~g~~l~~~p~~eR~~~L~~~~~~~-~--------------------~~i~~~ 151 (201)
T cd07898 93 KRLGRKFRDKFLDEDVPVVLMAFDLLYLNGESLLDRPLRERRQLLEELFVEI-P--------------------GRIRIA 151 (201)
T ss_pred HHhcccccchhhhccCcEEEEEEeEEeECCcchhhCCHHHHHHHHHHhhcCC-C--------------------CcEEEe
Confidence 013489999999999999999999999999999976321 0 114555
Q ss_pred ceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecC
Q 006606 463 DFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYA 511 (639)
Q Consensus 463 ~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKp~ 511 (639)
++....+.+++.+.+...+.++.||||+++.++||.+|+ +..|+||||.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~s~Y~~g~Rs~~wlK~K~~ 201 (201)
T cd07898 152 PALPVESAEELEAAFARARARGNEGLMLKDPDSPYEPGRRGLAWLKLKKE 201 (201)
T ss_pred eeEEcCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCcCCCcEEeCCC
Confidence 666665544443333346789999999999999999996 7899999983
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.91 E-value=1e-23 Score=202.94 Aligned_cols=147 Identities=19% Similarity=0.241 Sum_probs=126.9
Q ss_pred ccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCC
Q 006606 100 IGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179 (639)
Q Consensus 100 I~~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~ 179 (639)
++++||||+.|+++.+.. .++.++. .+|+.|++++. +.|+++.++..||+|.++|+.|+ .+|+
T Consensus 14 ~~~r~~~~~~P~~~~~~~------------~l~~L~~--~gI~~Iv~l~~--~~~~~~~~~~~gi~~~~~p~~D~-~~P~ 76 (166)
T PTZ00242 14 VLFKFLILDAPSPSNLPL------------YIKELQR--YNVTHLVRVCG--PTYDAELLEKNGIEVHDWPFDDG-APPP 76 (166)
T ss_pred eceEEEEecCCCcccHHH------------HHHHHHh--CCCeEEEecCC--CCCCHHHHHHCCCEEEecCCCCC-CCCC
Confidence 468999999998886553 2233433 57999999984 57888899999999999999885 7899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHH
Q 006606 180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFY 259 (639)
Q Consensus 180 ~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y 259 (639)
.+.+..|++.+.+++......|++|+|||.+|+||||+++|||||++.+|++++|+++++++||.++ +..|++.|.+|.
T Consensus 77 ~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 77 KAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHH
Confidence 9999999999999887545679999999999999999999999999988999999999999999887 689999999888
Q ss_pred hhcCC
Q 006606 260 HEKRL 264 (639)
Q Consensus 260 ~~~~~ 264 (639)
...+.
T Consensus 156 ~~~~~ 160 (166)
T PTZ00242 156 PRKKA 160 (166)
T ss_pred HHhcc
Confidence 76654
No 9
>cd07903 Adenylation_DNA_ligase_IV Adenylation domain of DNA Ligase IV. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligase in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent protein kinase. DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more di
Probab=99.90 E-value=9.2e-23 Score=206.16 Aligned_cols=167 Identities=22% Similarity=0.296 Sum_probs=123.5
Q ss_pred hhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCccc-------ccccCCCCeEeeEEEEEecCC
Q 006606 321 QLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEG-------LGEKTHHFTLLDGEMIIDKLP 393 (639)
Q Consensus 321 ~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~-------~~~~~~~~tlLDGElV~d~~~ 393 (639)
..+...+|++++|+||+|+++++.++.+.+++|+++. ++..||....... .......+++||||||+-...
T Consensus 28 ~~~~~~~~~~E~K~DG~R~~i~~~~~~v~l~SR~g~~--~t~~~p~~~~~~~~~~~l~~~~~~~~~~~iLDGElv~~~~~ 105 (225)
T cd07903 28 KLLKGKPFYIETKLDGERIQLHKDGNEFKYFSRNGND--YTYLYGASLTPGSLTPYIHLAFNPKVKSCILDGEMVVWDKE 105 (225)
T ss_pred HhhcCCeEEEEEeeCceEEEEEecCCEEEEEeCCCcc--ccccccccccccccchhhhhhccccCcEEEeceEEEEEEcC
Confidence 4455678999999999999999998999999999983 4667886543210 011224679999999973221
Q ss_pred C-------------------CCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCC
Q 006606 394 D-------------------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDL 454 (639)
Q Consensus 394 ~-------------------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~ 454 (639)
+ .....+.|++||||+++|.+++++||.+|+++|++.+. +..
T Consensus 106 ~~~~~~f~~l~~~~~~~~~~~~~~~~~~~vFDiL~~~g~~l~~~pl~eR~~~L~~~~~-~~~------------------ 166 (225)
T cd07903 106 TKRFLPFGTLKDVAKLREVEDSDLQPCFVVFDILYLNGKSLTNLPLHERKKLLEKIIT-PIP------------------ 166 (225)
T ss_pred cCeeccchHHHHHHhhcccccCCccEEEEEEEEEEECCeecccCcHHHHHHHHHHhcC-CCC------------------
Confidence 1 11235789999999999999999999999999999653 210
Q ss_pred CCcEEEecceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCC
Q 006606 455 EPFRVRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARM 513 (639)
Q Consensus 455 ~pf~I~~K~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKp~~~ 513 (639)
-.+...+....+ .+.++++. ...++.||||+|..++||.+| ++..|+||||...
T Consensus 167 --~~i~~~~~~~~~~~~~~~~~~~~---~~~~g~EGlv~K~~~s~Y~~g~Rs~~wlK~K~~Y~ 224 (225)
T cd07903 167 --GRLEVVKRTEASTKEEIEEALNE---AIDNREEGIVVKDLDSKYKPGKRGGGWIKIKPEYL 224 (225)
T ss_pred --CeEEEEEEEeCCCHHHHHHHHHH---HHHcCCceEEEecCCCCCccCCcCCCcEEechhhc
Confidence 013334444443 34455553 567899999999999999999 5789999999754
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=7e-23 Score=203.92 Aligned_cols=140 Identities=17% Similarity=0.283 Sum_probs=120.2
Q ss_pred CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHH
Q 006606 102 GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181 (639)
Q Consensus 102 ~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~ 181 (639)
.+||+|+.|++..+. ..++.++. .+|+.||+++ ++.|+++++++.||+|+++|++|+ .+|+.+
T Consensus 92 ~rfLi~~~P~~~~~~------------~yl~eLk~--~gV~~lVrlc--E~~Yd~~~~~~~GI~~~~lpipDg-~aPs~~ 154 (241)
T PTZ00393 92 IKILILDAPTNDLLP------------LYIKEMKN--YNVTDLVRTC--ERTYNDGEITSAGINVHELIFPDG-DAPTVD 154 (241)
T ss_pred eeEEEeCCCCHHHHH------------HHHHHHHH--cCCCEEEECC--CCCCCHHHHHHcCCeEEEeecCCC-CCCCHH
Confidence 499999999887443 23344443 5799999998 468899999999999999999995 899999
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhh
Q 006606 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261 (639)
Q Consensus 182 ~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~ 261 (639)
.+.+|++.+..++. .|+.|+|||++|+||||+|+|+|||+ .||++++|+++++++||.++ +..|++.|.+|...
T Consensus 155 ~i~~~l~~i~~~l~----~g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~ 228 (241)
T PTZ00393 155 IVSNWLTIVNNVIK----NNRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKK 228 (241)
T ss_pred HHHHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Confidence 99999987766653 78899999999999999999999998 69999999999999999987 68999999998886
Q ss_pred cCC
Q 006606 262 KRL 264 (639)
Q Consensus 262 ~~~ 264 (639)
...
T Consensus 229 ~~k 231 (241)
T PTZ00393 229 KKK 231 (241)
T ss_pred ccc
Confidence 543
No 11
>cd07897 Adenylation_DNA_ligase_Bac1 Adenylation domain of putative bacterial ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. The adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenylation domain binds ATP and contains many of the active site residues.
Probab=99.88 E-value=3.8e-22 Score=199.11 Aligned_cols=161 Identities=22% Similarity=0.327 Sum_probs=120.6
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCC-------
Q 006606 323 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS------- 395 (639)
Q Consensus 323 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~------- 395 (639)
+...+|++++|+||+|++++..++++.|++|+++ .++..||..... .+....++|||||||+...++.
T Consensus 21 ~~~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~--~~t~~~p~l~~~---~~~l~~~~iLDGElv~~~~~~~~~F~~l~ 95 (207)
T cd07897 21 GDPSDWQAEWKWDGIRGQLIRRGGEVFLWSRGEE--LITGSFPELLAA---AEALPDGTVLDGELLVWRDGRPLPFNDLQ 95 (207)
T ss_pred cCcccEEEEEeEceEEEEEEEcCCEEEEEeCCCC--cccccchHHHHH---HHhCCCCeEEEeEEEEecCCCccCHHHHH
Confidence 3456899999999999999998899999999998 347789976432 1122468999999998543110
Q ss_pred -------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006606 396 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 462 (639)
Q Consensus 396 -------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 462 (639)
...++.|++||||+++|+++++.||.+|+++|++.+. +.. .+ .+.+.
T Consensus 96 ~r~~~~~~~~~~~~~~~~~~~vFDil~l~g~~l~~~pl~eRr~~L~~l~~-~~~----------~~---------~i~~~ 155 (207)
T cd07897 96 QRLGRKTVGKKLLAEAPAAFRAYDLLELNGEDLRALPLRERRARLEALLA-RLP----------PP---------RLDLS 155 (207)
T ss_pred HHhcccccchhhHhhCCeEEEEEeeeeECceEhhhCCHHHHHHHHHHhhh-hcC----------CC---------ceeec
Confidence 0124789999999999999999999999999999653 210 01 13333
Q ss_pred ceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecC
Q 006606 463 DFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYA 511 (639)
Q Consensus 463 ~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKp~ 511 (639)
++...+ .+..+++. ...++.||||+|..+++|.+|+ +..|+|.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~---~~~~g~EGiv~K~~~s~Y~~Grr~~~W~K~K~d 205 (207)
T cd07897 156 PLIAFADWEELAALRAQ---SRERGAEGLMLKRRDSPYLVGRKKGDWWKWKID 205 (207)
T ss_pred ceEecCCHHHHHHHHHH---HHHcCCeEEEEeCCCCCcCCCCcCCCeeEeCCC
Confidence 444443 34455553 5778999999999999999997 5679999974
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.87 E-value=1.5e-21 Score=187.87 Aligned_cols=148 Identities=23% Similarity=0.301 Sum_probs=123.6
Q ss_pred cCceeecCCCCccccccCCCCCCCC-CHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCC
Q 006606 101 GGCIIPSKVPLSEFFNDCIPPGKRY-SFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179 (639)
Q Consensus 101 ~~~fip~K~Pl~~~~~~~i~~~~~~-~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~ 179 (639)
+++|+.|.+|-..... +.....+ .+..+++.++ +.+|++++.|+ .+.||++.+.+.||.++.+++.| +.+|+
T Consensus 58 p~~~i~f~~p~~~s~g--i~~~f~~~~~~~~~~~~~--~~~v~s~vrln--~~~yd~~~f~~~Gi~h~~l~f~D-g~tP~ 130 (225)
T KOG1720|consen 58 PDRFIAFAGPHLKSRG--IESGFPLHLPQPYIQYFK--NNNVTSIVRLN--KRLYDAKRFTDAGIDHHDLFFAD-GSTPT 130 (225)
T ss_pred cchhhhhcCccccccc--hhhcccccCChhHHHHhh--hcccceEEEcC--CCCCChHHhcccCceeeeeecCC-CCCCC
Confidence 4678888888554331 2222222 2445666655 57899999998 67899999999999999999999 59999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHH
Q 006606 180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFY 259 (639)
Q Consensus 180 ~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y 259 (639)
.+.+.+|++.+...+ +++.|+|||++|+||||+|||||||+..|||+.|||+.+|..||+++..+.|...+.+++
T Consensus 131 ~~~v~~fv~i~e~~~-----~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~ 205 (225)
T KOG1720|consen 131 DAIVKEFVKIVENAE-----KGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQR 205 (225)
T ss_pred HHHHHHHHHHHHHHH-----hcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHH
Confidence 999999998875432 389999999999999999999999999999999999999999999999999988888777
Q ss_pred h
Q 006606 260 H 260 (639)
Q Consensus 260 ~ 260 (639)
.
T Consensus 206 ~ 206 (225)
T KOG1720|consen 206 D 206 (225)
T ss_pred H
Confidence 6
No 13
>cd07906 Adenylation_DNA_ligase_LigD_LigC Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic cor
Probab=99.87 E-value=1.4e-21 Score=192.53 Aligned_cols=157 Identities=21% Similarity=0.245 Sum_probs=118.5
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCC----------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPD---------- 394 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~---------- 394 (639)
..+|++++|+||+|+++++.++++.+++|++.. ++..||..... +......+++||||||+...++
T Consensus 15 ~~~~~~e~K~DG~R~~i~~~~~~v~~~SR~g~~--~t~~~p~l~~~--~~~~~~~~~iLDGElv~~~~~~~~~F~~l~~~ 90 (190)
T cd07906 15 GEDWLYEIKWDGYRALARVDGGRVRLYSRNGLD--WTARFPELAEA--LAALPVRDAVLDGEIVVLDEGGRPDFQALQNR 90 (190)
T ss_pred CCCeEEEEeEceEEEEEEEECCEEEEEcCCCCc--chhhhHHHHHH--HHhcCCCCEEEEeEEEEECCCCCCCHHHHHHh
Confidence 458999999999999999999999999999983 35567764321 1011357899999999853322
Q ss_pred -------CCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeec
Q 006606 395 -------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL 467 (639)
Q Consensus 395 -------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~ 467 (639)
.....+.|+|||+|+++|+++.++||.+|+++|++.+. +.. + + +.+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~vFDil~~~~~~~~~~p~~eR~~~L~~~~~-~~~-----------~-------~--i~~~~~~~~ 149 (190)
T cd07906 91 LRLRRRLARTVPVVYYAFDLLYLDGEDLRGLPLLERKELLEELLP-AGS-----------P-------R--LRVSEHFEG 149 (190)
T ss_pred hcccchhcccCceEEEEEeeeeeCCcchhhCCHHHHHHHHHHHhc-cCC-----------C-------c--EEECceEcC
Confidence 11246889999999999999999999999999999653 210 0 1 233333333
Q ss_pred hhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEec
Q 006606 468 STVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKY 510 (639)
Q Consensus 468 ~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKp 510 (639)
. .+.+++. .+.++.||||++..++||.+|+ +..|+|||.
T Consensus 150 ~-~~~~~~~---~~~~g~EGiv~K~~~s~Y~~g~rs~~wlK~K~ 189 (190)
T cd07906 150 G-GAALFAA---ACELGLEGIVAKRADSPYRSGRRSRDWLKIKC 189 (190)
T ss_pred C-HHHHHHH---HHHcCCcEEEEecCCCCcCCCCCCCccEEEec
Confidence 2 2556665 3578999999999999999998 889999995
No 14
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=99.87 E-value=1.6e-21 Score=194.78 Aligned_cols=157 Identities=19% Similarity=0.287 Sum_probs=118.5
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCc-ccccccCC-CCeEeeEEEEEecC-CCC------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTH-HFTLLDGEMIIDKL-PDS------ 395 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~-~~tlLDGElV~d~~-~~~------ 395 (639)
..+|++++|+||.|+++++.++++.+++|++. .++..||+.... ..+ .. .+++||||||+... +..
T Consensus 24 ~~~~~~E~K~DG~R~~~~~~~~~v~~~SR~~~--~~t~~~pel~~~~~~~---~~~~~~iLDGElv~~~~~g~~~~F~~l 98 (207)
T cd07901 24 GGEAAVEYKYDGIRVQIHKDGDEVRIFSRRLE--DITNALPEVVEAVREL---VKAEDAILDGEAVAYDPDGRPLPFQET 98 (207)
T ss_pred CCcEEEEEeEcceeEEEEEeCCEEEEEeCCCc--cccchhhHHHHHHHhc---CCCCCEEEeCEEEEECCCCCccCHHHH
Confidence 46899999999999999999999999999987 346778876431 111 22 68999999998541 110
Q ss_pred ------C--------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEe
Q 006606 396 ------R--------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRR 461 (639)
Q Consensus 396 ------~--------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~ 461 (639)
. ..++.|++||||+++|++++++||.+|++.|++.+.. .. .+..
T Consensus 99 ~~r~~~~~~~~~~~~~~~~~~~vFDil~~~g~~l~~~pl~eR~~~L~~~~~~-~~---------------------~i~~ 156 (207)
T cd07901 99 LRRFRRKYDVEEAAEEIPLTLFLFDILYLDGEDLLDLPLSERRKILEEIVPE-TE---------------------AILL 156 (207)
T ss_pred HHHhccccchhhhhccCcEEEEEEEEEEECCcchhcCCHHHHHHHHHHhcCc-CC---------------------cEEE
Confidence 0 1247899999999999999999999999999986532 10 0233
Q ss_pred cceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecC
Q 006606 462 KDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYA 511 (639)
Q Consensus 462 K~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKp~ 511 (639)
.++.... .+..+++. ...++.||||++..+++|.+| ++..||||||.
T Consensus 157 ~~~~~~~~~~~~~~~~~~---~~~~g~EGiv~K~~~s~Y~~g~Rs~~wlK~K~~ 207 (207)
T cd07901 157 APRIVTDDPEEAEEFFEE---ALEAGHEGVMVKSLDSPYQAGRRGKNWLKVKPD 207 (207)
T ss_pred EEEEecCCHHHHHHHHHH---HHHcCCceEEEeCCCCCcCCCCCCCCeEEecCC
Confidence 3334433 44455554 567899999999999999999 67899999983
No 15
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligo
Probab=99.86 E-value=3.1e-21 Score=194.07 Aligned_cols=165 Identities=16% Similarity=0.256 Sum_probs=120.6
Q ss_pred hhhcccceeeeecCceeEEEEEEEC-CEEEEEeCCCccccccCcCCCcCCc-ccccccCCCCeEeeEEEEEecCC-CC--
Q 006606 321 QLLRQRYYYATWKADGTRYMMLITI-DGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLP-DS-- 395 (639)
Q Consensus 321 ~~l~~~~Y~V~eK~DG~R~ll~i~~-~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~-~~-- 395 (639)
..+...+|++++|+||.|+++++.+ +.+.|++|+++ .++-.||+.... .........++|||||||+.... +.
T Consensus 26 ~~~~~~~~~~E~K~DG~R~~~h~~~~~~v~l~SR~g~--~~t~~~pel~~~~~~~~~~~~~~~iLDGElv~~~~~~g~~~ 103 (219)
T cd07900 26 DRFEDKEFTCEYKYDGERAQIHLLEDGKVKIFSRNLE--NNTEKYPDIVAVLPKSLKPSVKSFILDSEIVAYDRETGKIL 103 (219)
T ss_pred HHhCCCeEEEEEeecceEEEEEEcCCCeEEEECCCCc--cccchhhHHHHHHHHHhcccCccEEEeeEEEEEEcCCCCCc
Confidence 3455568999999999999999876 78999999998 346778875432 11111124689999999985421 10
Q ss_pred -----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcE
Q 006606 396 -----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFR 458 (639)
Q Consensus 396 -----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~ 458 (639)
...++.|++||||++||++++.+||.+|+++|++.+. +.. + .
T Consensus 104 ~F~~l~~r~~~~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~-~~~-----------~---------~ 162 (219)
T cd07900 104 PFQVLSTRKRKDVDANDIKVQVCVFAFDLLYLNGESLLKKPLRERRELLHSLFK-EVP-----------G---------R 162 (219)
T ss_pred ChHHHhhhcccccccccCcccEEEEEEEEEEECCchhhcCCHHHHHHHHHHhcC-CCC-----------C---------e
Confidence 0145789999999999999999999999999999652 210 0 1
Q ss_pred EEecceeech---hHHHHHHHhcccccCCCceEEEEeCC--CCCccCC-CCCeEEEecC
Q 006606 459 VRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWD--DPYVPRT-HEGLLKWKYA 511 (639)
Q Consensus 459 I~~K~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~--spY~~G~-~~~llKWKp~ 511 (639)
+.+.++...+ .+..+++. ...++.||||+|..+ ++|.+|+ +..|+|+||.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~---~~~~g~EGiv~K~~~~~s~Y~~g~Rs~~W~K~K~d 218 (219)
T cd07900 163 FQFATSKDSEDTEEIQEFLEE---AVKNNCEGLMVKTLDSDATYEPSKRSHNWLKLKKD 218 (219)
T ss_pred EEEEEEEecCCHHHHHHHHHH---HHHcCCceEEEecCCCCCccCCCCcCCCceEeCCC
Confidence 2333344433 44556654 577999999999999 9999985 6789999984
No 16
>cd07905 Adenylation_DNA_ligase_LigC Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains, comprising a catalytic core unit that is
Probab=99.86 E-value=4.8e-21 Score=189.37 Aligned_cols=158 Identities=21% Similarity=0.217 Sum_probs=117.4
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCC---------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS--------- 395 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~--------- 395 (639)
..+|++++|+||+|++++..++++.|++|+++ .++..||+..+. +......+++||||||+...+..
T Consensus 15 ~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~--~~t~~~p~~~~~--~~~~~~~~~iLDGElv~~~~~~~~F~~l~~r~ 90 (194)
T cd07905 15 PGGWQYEPKWDGFRCLAFRDGDEVRLQSRSGK--PLTRYFPELVAA--ARALLPPGCVLDGELVVWRGGRLDFDALQQRI 90 (194)
T ss_pred CCceEEEeeeceEEEEEEEeCCEEEEEeCCCC--chhhhhHHHHHH--HHhhCCCCEEEEeEEEEEcCCCCCHHHHHHHh
Confidence 46799999999999999999999999999998 346678875421 11112458999999998432110
Q ss_pred -----------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecce
Q 006606 396 -----------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 464 (639)
Q Consensus 396 -----------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~ 464 (639)
...+++|++||+|+++|.++++.||.+|++.|++.+.. .. +. |...+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~~-~~-----------~~---------i~~~~~ 149 (194)
T cd07905 91 HPAASRVRRLAEETPASFVAFDLLALGGRDLRGRPLRERRAALEALLAG-WG-----------PP---------LHLSPA 149 (194)
T ss_pred cccccchhhhhccCCEEEEEEeeeeeCCcccccCCHHHHHHHHHHHhcc-cC-----------CC---------eEECCc
Confidence 01347899999999999999999999999999997632 10 11 222222
Q ss_pred e-echhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecC
Q 006606 465 W-LLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYA 511 (639)
Q Consensus 465 ~-~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~ 511 (639)
. ....+..+++. ...++.||||++..+++|.+|+ ..|+|+||.
T Consensus 150 ~~~~~~~~~~~~~---~~~~g~EGiv~K~~~s~Y~~Gr-~~WlK~K~~ 193 (194)
T cd07905 150 TTDRAEAREWLEE---FEGAGLEGVVAKRLDGPYRPGE-RAMLKVKHR 193 (194)
T ss_pred cCCHHHHHHHHHH---HHHCCCceEEEeCCCCCcCCCC-CcEEEEecc
Confidence 2 12244556664 4679999999999999999999 699999974
No 17
>PF03919 mRNA_cap_C: mRNA capping enzyme, C-terminal domain; InterPro: IPR013846 This domain is found at the C terminus of the mRNA capping enzyme. The mRNA capping enzyme in yeasts is composed of two separate chains: alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity; PDB: 3S24_G 3RTX_A 3KYH_D 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=99.85 E-value=7.9e-22 Score=174.95 Aligned_cols=58 Identities=48% Similarity=0.799 Sum_probs=51.6
Q ss_pred CCCCCCCceEEEEEEeCCCCeeEEEEEeCCCCCCChHHHHHHHHHhcccCCCHHHHHH
Q 006606 551 REPSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPNDINTYRKVMRSIRDNITEEVLLN 608 (639)
Q Consensus 551 ~~~~~~dg~IvEc~~d~~~~~W~~~R~R~DK~~pN~~~tv~~v~~SI~d~It~e~L~~ 608 (639)
+...+++|+||||+||+++|+|+|||+|+||++||+++||.+||+||.++||+++|++
T Consensus 48 ~~~~~ld~rIVEC~~d~~~~~W~~~R~R~DK~~pN~~~t~~~v~~sI~d~Vt~e~Ll~ 105 (105)
T PF03919_consen 48 KDGQPLDGRIVECSFDNEKGQWKFMRIRDDKSTPNHISTVISVLESIEDPVTEEELLE 105 (105)
T ss_dssp CSTCCSTTCEEEEEEETTTTEEEEEEEETTSSS--BHHHHHHHHHHHHCS--HHHHHH
T ss_pred hcccccCCcEEEEEEeCCCCcEeEEEEcCCCCCCccHHHHHHHHHHHHcCCCHHHhcC
Confidence 6678899999999999989999999999999999999999999999999999999984
No 18
>cd08039 Adenylation_DNA_ligase_Fungal Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. This group is composed of uncharacterized fungal proteins with similarity to ATP-dependent DNA ligases. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site res
Probab=99.85 E-value=9.2e-21 Score=192.11 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=123.8
Q ss_pred ccccchhhhh----hhcccceeeeecCceeEEEEEEE----CCEEEEEeCCCccccccCcCCCcCCc-cc-cc----c-c
Q 006606 312 PVSLNSDNLQ----LLRQRYYYATWKADGTRYMMLIT----IDGCYLIDRCFNFRRVQMRFPCRNSN-EG-LG----E-K 376 (639)
Q Consensus 312 PVsl~r~~l~----~l~~~~Y~V~eK~DG~R~ll~i~----~~~vyLidR~~~~~~v~~~FP~~~~~-~~-~~----~-~ 376 (639)
|-|+.-.+++ .+...+|++++|+||.|+++++. ++.+.|++|+++ .++..||+.... .. +. . .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~E~K~DG~R~qih~~~~~~~~~v~lfSR~~~--d~T~~~pel~~~~~~~~~~~~~~~~ 81 (235)
T cd08039 4 PKSLKARSIKHCCKMIGSRRMWVETKYDGEYCQIHIDLSKDSSPIRIFSKSGK--DSTADRAGVHSIIRKALRIGKPGCK 81 (235)
T ss_pred cchhcccCHHHHHHHhCCCcEEEEEeecceEEEEEEecccCCCEEEEEeCCCC--cccccchhHHHHHHHHhhccccccC
Confidence 5666555554 45677899999999999999987 678999999998 446778875321 11 10 0 0
Q ss_pred CCCCeEeeEEEEEecC-CCC---------------------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHH
Q 006606 377 THHFTLLDGEMIIDKL-PDS---------------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLE 428 (639)
Q Consensus 377 ~~~~tlLDGElV~d~~-~~~---------------------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~ 428 (639)
..+++|||||||+... ++. ...++.|++||+|++||+++++.||.+|+++|+
T Consensus 82 ~~~~~ILDGEiVv~d~~~g~~~~F~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~vFDlL~lnG~~l~~~pl~eRr~~L~ 161 (235)
T cd08039 82 FSKNCILEGEMVVWSDRQGKIDPFHKIRKHVERSGSFIGTDNDSPPHEYEHLMIVFFDVLLLDDESLLSKPYSERRDLLE 161 (235)
T ss_pred CCccEEEEeEEEEEECCCCccCCHHHHHhhcccccchhccccccccccccceEEEEEEEEEECChhhhcCCHHHHHHHHH
Confidence 1367999999987532 110 002379999999999999999999999999999
Q ss_pred HHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCC------
Q 006606 429 KEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTH------ 502 (639)
Q Consensus 429 ~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~------ 502 (639)
+.+ .+... .... ...+.+..........+..+|+. .+..+.||||+|..+++|.+|+.
T Consensus 162 ~l~-~~~~~-----------~~~~-~~~~~i~~~~~~~~~~l~~~~~~---a~~~g~EGIv~K~~~S~Y~pgr~~~~~r~ 225 (235)
T cd08039 162 SLV-HVIPG-----------YAGL-SERFPIDFSRSSGYERLRQIFAR---AIAERWEGLVLKGDEEPYFDLFLEQGSFS 225 (235)
T ss_pred Hhc-ccCCC-----------cEEE-EEEEeecccCCCCHHHHHHHHHH---HHHcCCceEEEecCCCCcccCcccccccC
Confidence 965 22110 0000 00001111111122344555654 56789999999999999999986
Q ss_pred CCeEEEecC
Q 006606 503 EGLLKWKYA 511 (639)
Q Consensus 503 ~~llKWKp~ 511 (639)
..|||+||.
T Consensus 226 ~~WlKlK~d 234 (235)
T cd08039 226 GCWIKLKKD 234 (235)
T ss_pred CCeEEeCCC
Confidence 699999984
No 19
>PRK07636 ligB ATP-dependent DNA ligase; Reviewed
Probab=99.85 E-value=2.1e-20 Score=194.14 Aligned_cols=161 Identities=22% Similarity=0.261 Sum_probs=123.2
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCCC--------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSR-------- 396 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~-------- 396 (639)
..+|++++|+||+|+++++.++.+.|++|+++. ++..||+.... . ...+++||||||.....+..
T Consensus 17 ~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~~--~t~~fPe~~~~-~----~~~~~vLDGElv~~d~~g~~~F~~l~~r 89 (275)
T PRK07636 17 SENYITEPKFDGIRLIASKNNGLIRLYTRHNNE--VTAKFPELLNL-D----IPDGTVLDGELIVLGSTGAPDFEAVMER 89 (275)
T ss_pred CCcEEEEEEEceeEEEEEEeCCEEEEEeCCCCC--chhhhhhHHhh-h----cCCCEEEEeEEEEECCCCCCCHHHHHHH
Confidence 458999999999999999998999999999983 46789876432 1 23579999999984321110
Q ss_pred --------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeech
Q 006606 397 --------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS 468 (639)
Q Consensus 397 --------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~ 468 (639)
..++.|++||+|++||++++++||.+|+++|++.+. +. +. +...+... .
T Consensus 90 ~~~~~~~~~~~~~~~vFDlL~~~g~~l~~~pl~eRr~~L~~~~~-~~------------~~---------~~~~~~~~-~ 146 (275)
T PRK07636 90 FQSKKSTKIHPVVFCVFDVLYINGVSLTALPLSERKEILASLLL-PH------------PN---------VKIIEGIE-G 146 (275)
T ss_pred hccccccccCceEEEEEEeEEECceehhhCCHHHHHHHHHHhcC-CC------------CC---------EEEccccc-c
Confidence 135789999999999999999999999999999753 21 11 22222222 2
Q ss_pred hHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCCceEEEEE
Q 006606 469 TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLF 520 (639)
Q Consensus 469 ~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKp~~~nTvDF~l 520 (639)
....+++. ...++.||||+|..+|+|.+| ++..|+|.|. ..+.|+.|
T Consensus 147 ~~~~~~~~---~~~~g~EGiV~K~~ds~Y~~g~Rs~~WlKiK~--~~~~e~vV 194 (275)
T PRK07636 147 HGTAYFEL---VEERELEGIVIKKANSPYEINKRSDNWLKVIN--YQYTDVLI 194 (275)
T ss_pred cHHHHHHH---HHHcCCcEEEEeCCCCCCCCCCCCCCeEEEec--CCeEEEEE
Confidence 34566764 356899999999999999998 5789999994 58899988
No 20
>TIGR02779 NHEJ_ligase_lig DNA polymerase LigD, ligase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the ligase domain.
Probab=99.85 E-value=1.5e-20 Score=197.64 Aligned_cols=169 Identities=22% Similarity=0.299 Sum_probs=125.1
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCC---------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS--------- 395 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~--------- 395 (639)
..+|++++|+||+|+++++.++++.|++|+++ .++..||..... +......+++||||||+....+.
T Consensus 11 ~~~~~~E~K~DG~R~~~~~~~~~v~l~SR~g~--~~t~~~p~l~~~--~~~~~~~~~iLDGElv~~d~~g~~~F~~l~~r 86 (298)
T TIGR02779 11 GDDWRYEVKYDGYRCLARIEGGKVRLISRNGH--DWTEKFPILAAA--LAALPILPAVLDGEIVVLDESGRSDFSALQNR 86 (298)
T ss_pred CCCEEEEEEEceEEEEEEEeCCEEEEEeCCCC--chHhHhHHHHHH--HHhCCCCcEEEEeEEEEECCCCCCCHHHHHhh
Confidence 45799999999999999999899999999998 346678865432 10112368999999998543211
Q ss_pred ----CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHH
Q 006606 396 ----RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVN 471 (639)
Q Consensus 396 ----~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~ 471 (639)
...++.|++||||++||++++++||.+|+++|++.+..... +..+..........+.
T Consensus 87 ~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~l~~~~~~-------------------~~~~~~~~~~~~~~~~ 147 (298)
T TIGR02779 87 LRAGRDRPATYYAFDLLYLDGEDLRDLPLSERKKLLEELLKAIKG-------------------PLAPDRYSVHFEGDGQ 147 (298)
T ss_pred hhcCCCCceEEEEEeeeeECceehhcCCHHHHHHHHHHHhcccCC-------------------CceeEecccCchhHHH
Confidence 11457899999999999999999999999999996532100 1111110111223456
Q ss_pred HHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEE
Q 006606 472 KLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFE 521 (639)
Q Consensus 472 ~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF~l~ 521 (639)
.+|+. ...++.||||++..+++|.+|++..|+|+|+. .+.|+.|.
T Consensus 148 ~~~~~---~~~~g~EGiv~K~~ds~Y~~Grs~~WlK~K~~--~~~d~vV~ 192 (298)
T TIGR02779 148 ALLEA---ACRLGLEGVVAKRRDSPYRSGRSADWLKLKCR--RRQEFVIG 192 (298)
T ss_pred HHHHH---HHHcCCceEEEeCCCCCCCCCCCCCcEEEccC--CCCEEEEE
Confidence 66764 46789999999999999999998899999975 57888873
No 21
>PRK08224 ligC ATP-dependent DNA ligase; Reviewed
Probab=99.84 E-value=1.9e-20 Score=200.07 Aligned_cols=163 Identities=22% Similarity=0.286 Sum_probs=124.3
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCC----------
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS---------- 395 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~---------- 395 (639)
.+|++++|+||+|+++++.++++.|++|++. .++-.||+.... +......++|||||||+...++.
T Consensus 24 ~~w~~E~K~DG~R~~~~~~~~~v~l~SRng~--d~t~~fPel~~~--~~~~~~~~~vLDGEiVv~~~~~~~F~~Lq~r~~ 99 (350)
T PRK08224 24 DGWSYEPKWDGFRCLVFRDGDEVELGSRNGK--PLTRYFPELVAA--LRAELPERCVLDGEIVVARDGGLDFEALQQRIH 99 (350)
T ss_pred CcEEEEEeECeeEEEEEEECCEEEEEeCCCC--CchhhhHHHHHH--HHhhCCCCEEEeeEEEEeCCCCCCHHHHHhhhh
Confidence 4799999999999999999999999999998 446779976432 11112468999999998643211
Q ss_pred -C---------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEeccee
Q 006606 396 -R---------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFW 465 (639)
Q Consensus 396 -~---------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~ 465 (639)
. ..++.|++||+|++||++++++||.+|++.|++.+. +. + + +.+.+..
T Consensus 100 ~~~~~~~~~~~~~pv~~~vFDlL~l~G~dl~~~Pl~eRr~~L~~l~~-~~------------~-------~--i~~~~~~ 157 (350)
T PRK08224 100 PAASRVRKLAEETPASFVAFDLLALGDRDLTGRPFAERRAALEAAAA-GS------------G-------P--VHLTPAT 157 (350)
T ss_pred ccccchhhhhhcCCEEEEEEeeeeECCcChhhCCHHHHHHHHHHhcC-CC------------C-------c--EEEeccc
Confidence 0 124689999999999999999999999999999652 11 1 1 2333332
Q ss_pred e-chhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEE
Q 006606 466 L-LSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLF 520 (639)
Q Consensus 466 ~-~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF~l 520 (639)
. ......+|+. ...++.||||+|..+++|.+|+.. |+|+|+ ..++||.|
T Consensus 158 ~~~~~~~~~~~~---a~~~G~EGIV~Kr~dS~Y~~Grr~-WlKiK~--~~~~d~vI 207 (350)
T PRK08224 158 TDPATARRWFEE---FEGAGLDGVIAKPLDGPYQPGKRA-MFKVKH--ERTADCVV 207 (350)
T ss_pred CCHHHHHHHHHH---HHhCCCcEEEEeCCCCCcCCCCcC-EEEEcc--CCcEEEEE
Confidence 2 2345567764 467899999999999999999876 999997 57999998
No 22
>PRK09247 ATP-dependent DNA ligase; Validated
Probab=99.84 E-value=1.4e-20 Score=211.97 Aligned_cols=170 Identities=22% Similarity=0.293 Sum_probs=126.7
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecC--CCC-----
Q 006606 323 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKL--PDS----- 395 (639)
Q Consensus 323 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~--~~~----- 395 (639)
+...+|++++|+||+|++++..++++.+++|+++ .++..||...+.. .....++|||||||.... ++.
T Consensus 222 ~~~~~~~~E~K~DG~R~qih~~~~~v~lfSR~g~--d~t~~fPei~~~~---~~l~~~~ILDGElv~~~~~~~~~~~F~~ 296 (539)
T PRK09247 222 GDPADWQAEWKWDGIRVQLVRRGGEVRLWSRGEE--LITERFPELAEAA---EALPDGTVLDGELLVWRPEDGRPQPFAD 296 (539)
T ss_pred cCCCcEEEEEeEcceEEEEEEeCCEEEEEeCCCc--cchhhhHHHHHHH---HhCCCCEEEEeEEEEEECCCCCcCCHHH
Confidence 3446899999999999999999999999999998 4578899764321 122457999999998641 110
Q ss_pred ------C---------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEE
Q 006606 396 ------R---------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVR 460 (639)
Q Consensus 396 ------~---------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~ 460 (639)
. ..+++|++||||++||++++++||.+|+++|++.+.. .. ++ .+.
T Consensus 297 l~~R~~rk~~~~~~~~~~pv~~~vFDiL~l~g~~l~~~Pl~eRr~~L~~~~~~-~~----------~~---------~i~ 356 (539)
T PRK09247 297 LQQRIGRKTVGKKLLADYPAFLRAYDLLEDGGEDLRALPLAERRARLEALIAR-LP----------DP---------RLD 356 (539)
T ss_pred HHHHhcccccchhhhhcCCeEEEEEEeeeeCCcchhhCCHHHHHHHHHHHhcc-cC----------CC---------eEE
Confidence 0 1356899999999999999999999999999997632 10 01 122
Q ss_pred ecceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccCCC-CCeEEEecCCCceEEEEEE
Q 006606 461 RKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTH-EGLLKWKYARMNSVDFLFE 521 (639)
Q Consensus 461 ~K~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~-~~llKWKp~~~nTvDF~l~ 521 (639)
..+..... .+..+++. .+.++.||||+|..+++|.+|+. ..|+|||+.. .|+|..+-
T Consensus 357 ~~~~~~~~~~~e~~~~~~~---a~~~g~EGlm~K~~~s~Y~~Grr~~~WlK~K~~~-~t~DlVvi 417 (539)
T PRK09247 357 LSPLVPFSDWDELAALRAA---ARERGVEGLMLKRRDSPYLVGRKKGPWWKWKRDP-LTIDAVLM 417 (539)
T ss_pred ecCceecCCHHHHHHHHHH---HHHCCCceEEEecCCCCcCCCCCcchhhcccCCC-CcEEEEEE
Confidence 33333333 34455553 57799999999999999999974 6799999753 48999883
No 23
>cd07902 Adenylation_DNA_ligase_III Adenylation domain of DNA Ligase III. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three-step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing factor 1 (XRCC1) and functions in single nuc
Probab=99.84 E-value=2.7e-20 Score=186.62 Aligned_cols=158 Identities=19% Similarity=0.315 Sum_probs=113.7
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCc--ccccccCCCCeEeeEEEEEecC-CCC-------
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN--EGLGEKTHHFTLLDGEMIIDKL-PDS------- 395 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~--~~~~~~~~~~tlLDGElV~d~~-~~~------- 395 (639)
.+|++++|+||+|++++..++.+.+++|++.-+. ...||..... ..+ ....++|||||||+... .+.
T Consensus 34 ~~~~~E~K~DG~R~~i~~~~~~v~l~SR~g~~~t-~~~~~~~~~~~~~~~--~~~~~~iLDGEiv~~d~~~g~~~~F~~l 110 (213)
T cd07902 34 NGMYAEIKYDGERVQVHKQGDNFKFFSRSLKPVL-PHKVAHFKDYIPKAF--PHGHSMILDSEVLLVDTKTGKPLPFGTL 110 (213)
T ss_pred CceEEEeccCCEEEEEEEcCCEEEEEcCCCcccc-cchhHHHHHHHHHhc--ccccceeeeeEEEEEECCCCcccccchh
Confidence 4699999999999999998899999999987321 1234433211 111 11467999999988432 111
Q ss_pred --------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeec
Q 006606 396 --------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL 467 (639)
Q Consensus 396 --------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~ 467 (639)
....+.|++||||+++|.+++++||.+|++.|++.+. +.. . .+.+.++...
T Consensus 111 ~~~~~~~~~~~~v~~~vFDiL~l~g~~l~~~pl~eR~~~L~~~~~-~~~------------------~--~~~~~~~~~~ 169 (213)
T cd07902 111 GIHKKSAFKDANVCLFVFDCLYYNGESLMDKPLRERRKILEDNMV-EIP------------------N--RIMLSEMKFV 169 (213)
T ss_pred hhhhccccccCceEEEEEEEeeeCCcchhcCcHHHHHHHHHHhcc-CCC------------------C--eEEEEEEEEc
Confidence 0135789999999999999999999999999998652 110 0 1333344443
Q ss_pred h---hHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecC
Q 006606 468 S---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYA 511 (639)
Q Consensus 468 ~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~ 511 (639)
. .+..+++. ...++.||||+|..+++|.+|+. .|+||||.
T Consensus 170 ~~~~~l~~~~~~---~~~~g~EGvV~K~~~s~Y~~G~r-~W~K~K~d 212 (213)
T cd07902 170 KKADDLSAMIAR---VIKEGLEGLVLKDLKSVYEPGKR-HWLKVKKD 212 (213)
T ss_pred CCHHHHHHHHHH---HHHCCCCeEEEeCCCCCccCCCC-CceEeCCC
Confidence 3 34455654 46799999999999999999986 79999984
No 24
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed
Probab=99.83 E-value=6.3e-20 Score=207.93 Aligned_cols=277 Identities=18% Similarity=0.189 Sum_probs=172.7
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCc-cccccc--CCCCeEeeEEEEEecCCCC------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEK--THHFTLLDGEMIIDKLPDS------ 395 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~--~~~~tlLDGElV~d~~~~~------ 395 (639)
..+|+++.|+||.|+++++.++++.|++|++. .++..||+..+. ..+... ....+|||||||+....+.
T Consensus 15 g~~w~~E~K~DG~R~~~h~~~~~V~L~SRng~--d~T~~fPel~~~~~~~~~~~~~~~~~ILDGEiVvld~~g~~~F~~L 92 (610)
T PRK09633 15 GDEWRYEVKYDGFRCLLIIDETGITLISRNGR--ELTNTFPEIIEFCESNFEHLKEELPLTLDGELVCLVNPYRSDFEHV 92 (610)
T ss_pred CCcEEEEEeEcceEEEEEEECCEEEEEeCCCC--cchhhhhHHHHHHHhhhhccccCCceeeeeEEEEecCCCCCCHHHH
Confidence 35799999999999999999999999999998 457889976432 111100 0136899999998532110
Q ss_pred ----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEE
Q 006606 396 ----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRV 459 (639)
Q Consensus 396 ----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I 459 (639)
...++.|++||+|++||+++++.||.+|++.|++.+.. .... ..+.. .... .+
T Consensus 93 q~R~~~~~~~~i~~~~~~~pv~~~vFDlL~lnG~dL~~~PL~eRr~~L~~ll~~-~~~~-------~~~~~-~~~~--~i 161 (610)
T PRK09633 93 QQRGRLKNTEVIAKSANARPCQLLAFDLLELKGESLTSLPYLERKKQLDKLMKA-AKLP-------ASPDP-YAKA--RI 161 (610)
T ss_pred HhhhhccccchhhhhhcccceEEEEEeecccCCcccccCCHHHHHHHHHHHhhh-cccc-------ccccc-cccc--ce
Confidence 01246899999999999999999999999999997632 1100 00000 0000 13
Q ss_pred EecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCCceEEEEEEEecCCcee--EEEEeCC
Q 006606 460 RRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLFEVTDDDRQL--LYVFERG 536 (639)
Q Consensus 460 ~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKp~~~nTvDF~l~~~~~~~~~--L~~~~~g 536 (639)
...+.+ ...+.+|+. ...++.||||+|..+|+|.+| ++..|+|.|+ ..+.|+.|.--..+.+. +.++++|
T Consensus 162 ~~~~~~--~~~~~l~~~---a~~~g~EGIV~Kr~dS~Y~~G~Rs~~WlKiK~--~~~~d~vI~G~~~~~g~~llgv~~~g 234 (610)
T PRK09633 162 QYIPST--TDFDALWEA---VKRYDGEGIVAKKKTSKWLENKRSKDWLKIKN--WRYVHVIVTGYDPSNGYFTGSVYKDG 234 (610)
T ss_pred EEcCCH--HHHHHHHHH---HHHcCCceEEEeCCCCCCCCCCCCCCeEEEec--cCCceeEEEEEecCCceEEEEEecCC
Confidence 333322 255667775 456899999999999999988 6789999997 47889987321111222 2234444
Q ss_pred eeeeecCceeEecCC---------------CC----CCCCceEEEEEEeCC-CCeeE---EEEEeCCCCCCChHHHHHH-
Q 006606 537 KKKLMEGSSVEFTDR---------------EP----SFYSGKIIECTWDPD-VQLWK---CMRIRTDKSTPNDINTYRK- 592 (639)
Q Consensus 537 ~~~~~~~~~~~f~~~---------------~~----~~~dg~IvEc~~d~~-~~~W~---~~R~R~DK~~pN~~~tv~~- 592 (639)
+-..+.....-|++. .. ...-.-|+|+.|..- .|..+ |.|+|.||.- ...++...
T Consensus 235 ~l~~vGkvgtGft~~~~~~L~~~l~~l~~~~~~~~~wV~P~LV~EV~~~e~t~g~LR~P~f~glR~DK~~-~ev~~~~~~ 313 (610)
T PRK09633 235 QLTEVGSVKHGMEDEERQTLRAIFKQNGTKTKSGEYTLEPSICVTVACITFDGGTLREPSFVSFLFDMDP-TECTYQQLQ 313 (610)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHhccCCCCCcEEEeeeEEEEEEEeecCCCeEEeeEEeEEEcCCCh-HHcchhhhh
Confidence 321111000012220 00 001236788888532 23444 7899999962 22222211
Q ss_pred -----------------HHHhcccCCCHHHHHHHHHHHhc--Cccchhhc
Q 006606 593 -----------------VMRSIRDNITEEVLLNEIQEIIR--LPMYADRI 623 (639)
Q Consensus 593 -----------------v~~SI~d~It~e~L~~~i~~i~~--~~~~~~~~ 623 (639)
|+-- .+++|+.+|+.+-.+|.- ||-.++|.
T Consensus 314 ~~~~~~~~~v~~t~~dkv~~p-~~g~tK~dl~~Yy~~va~~~lp~l~~Rp 362 (610)
T PRK09633 314 RQLAPLPPKVEITSLDKPIWP-KIHKTKADYLLYLQEVSPFLLPFLRDRA 362 (610)
T ss_pred hhhccCCcccccCCCCceecC-CCCCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1111 258999999999888855 67766665
No 25
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1). All proteins in this family with known functions are ATP-dependent DNA ligases. Functions include DNA repair, DNA replication, and DNA recombination (or any process requiring ligation of two single-stranded DNA sections). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=5.7e-20 Score=206.80 Aligned_cols=166 Identities=22% Similarity=0.381 Sum_probs=123.9
Q ss_pred ceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCc-CCc--ccccccCCCCeEeeEEEEEecCC-CC-------
Q 006606 327 YYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCR-NSN--EGLGEKTHHFTLLDGEMIIDKLP-DS------- 395 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~-~~~--~~~~~~~~~~tlLDGElV~d~~~-~~------- 395 (639)
+|++++|+||+|+++++.++++.+++|+++ .++..||.. ... ..+ .....+|||||||..... +.
T Consensus 188 ~~~~E~K~DG~R~qih~~~~~v~l~SR~g~--~~t~~~pei~~~~~~~~~--~~~~~~ILDGElv~~d~~~g~~~~F~~l 263 (514)
T TIGR00574 188 KFYVEYKYDGERVQIHKDGDKFKIFSRRLE--NYTYAYPEIFTEFIKEAF--PGIKSCILDGEMVAIDPETGKILPFQTL 263 (514)
T ss_pred ceEEEEeecceEEEEEEcCCEEEEEcCCCc--ccccccchhHHHHHHHhc--CccceeeecceEEEEEcCCCCCcCcHhH
Confidence 899999999999999998889999999998 446688875 321 112 113467999999975321 10
Q ss_pred -------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEec
Q 006606 396 -------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRK 462 (639)
Q Consensus 396 -------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K 462 (639)
...++.|++||||++||+++++.||.+|+++|++.+ .+.. + .+...
T Consensus 264 ~~r~~~~~~~~~~~~~~~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~-~~~~-----------~---------~i~~~ 322 (514)
T TIGR00574 264 LRRKRRYDIDSMEKKVPVCLFVFDILYLNGESLIDEPLIERREILESIL-KPIP-----------N---------RIEIA 322 (514)
T ss_pred HhhhhhccccccccccceEEEEEEEEEECCcchhcCcHHHHHHHHHHhc-cCCC-----------C---------cEEEE
Confidence 013578999999999999999999999999999854 3211 0 13333
Q ss_pred ceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecC----CCceEEEEE
Q 006606 463 DFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYA----RMNSVDFLF 520 (639)
Q Consensus 463 ~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKp~----~~nTvDF~l 520 (639)
+..... .+..+|+ ..+.++.||||++..+++|.+| ++..|+||||. ...|+|+.|
T Consensus 323 ~~~~~~~~e~~~~~~~---~~~~~g~EGlv~K~~ds~Y~~G~Rs~~WlK~K~~y~~~~~~~~D~vv 385 (514)
T TIGR00574 323 EMKITSNVEELEKFLN---EAISEGCEGLMLKDLKSIYEPGKRGWLWLKFKPEYLEGMGDTLDLVV 385 (514)
T ss_pred EEEecCCHHHHHHHHH---HHHHcCCceEEEecCCCcccCCCCCCcceeCchhhcccccCceeEEE
Confidence 344433 3444554 4578999999999999999999 67899999984 346899987
No 26
>PHA02587 30 DNA ligase; Provisional
Probab=99.82 E-value=5.5e-19 Score=196.87 Aligned_cols=175 Identities=17% Similarity=0.236 Sum_probs=120.5
Q ss_pred hhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCc-ccccc---cCCCCeEeeEEEEEecCCC
Q 006606 319 NLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGE---KTHHFTLLDGEMIIDKLPD 394 (639)
Q Consensus 319 ~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~---~~~~~tlLDGElV~d~~~~ 394 (639)
.+......+|++++|+||+|+++++.++++.+++|+++-+ + .||..... ..+.. ....+++||||||+....+
T Consensus 145 ~~~~~~~~~~~~E~K~DG~R~q~h~~~~~v~l~SR~g~~~--~-~~p~i~~~l~~~~~~~~~~~~~~VLDGElv~~~~~~ 221 (488)
T PHA02587 145 LIKKNIKFPAYAQLKADGARCFADIDADGIEIRSRNGNEY--L-GLDLLKEELKKMTAEARQRPGGVVIDGELVYVEVET 221 (488)
T ss_pred HHHhhccCcEEEEEccCceEEEEEEeCCEEEEEecCCccc--c-CChhHHHHHHHHhhhhcccCCcEEEEeEEEEEeccc
Confidence 3444223389999999999999999999999999998733 3 35654321 11100 0126799999999852100
Q ss_pred ------------------------------------------CCCceeEEEEeEeeecC---CeeccCCCHHHHHHHHHH
Q 006606 395 ------------------------------------------SRRQERRYLIYDMMAIN---QASVIERPFYERWKMLEK 429 (639)
Q Consensus 395 ------------------------------------------~~~~~~~yliFDiL~~~---G~~l~~~pf~eR~~~L~~ 429 (639)
....++.|++||+|.++ |..+...||.+|++.|++
T Consensus 222 ~~~~~~~f~~~~~~~~~f~q~l~~R~~~~~i~~~~l~~~~~~~~~~pv~~~vFDiL~ld~y~~~~~~~~pl~eRr~~L~~ 301 (488)
T PHA02587 222 KKPNGLSFLFDDSKAKEFVGVVADRATGNGIVNKSLKGTISKEEAQEIVFQVWDIVPLEVYYGKEKSDMPYDDRFSKLAQ 301 (488)
T ss_pred CCCccchhhcccccccchhhhhhhhhhccchhhhhhccccchhhccceEEEEEEeechhhccCCccccCCHHHHHHHHHH
Confidence 00135789999999643 445778999999999999
Q ss_pred HhcCccccccccccccCCCCccCCCCCcEEEecceeec---hhHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeE
Q 006606 430 EVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLL---STVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLL 506 (639)
Q Consensus 430 ~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~---~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~ll 506 (639)
.+.... .+ .|...++... ..+..+++. ....+.||||++..+++|.+|++..|+
T Consensus 302 l~~~~~-----------~~---------~i~l~~~~~~~~~ee~~~~~~~---a~~~G~EGimlK~~ds~Y~~GRs~~Wl 358 (488)
T PHA02587 302 MFEDCG-----------YD---------RVELIENQVVNNLEEAKEIYKR---YVDQGLEGIILKNTDGLWEDGRSKDQI 358 (488)
T ss_pred HHhhcC-----------CC---------cEEEEeeEEcCCHHHHHHHHHH---HHhCCCCeEEEECCCCCCCCCCCCCcE
Confidence 763111 01 1222223222 344555654 567899999999999999999988999
Q ss_pred EEecCCCceEEEEEE
Q 006606 507 KWKYARMNSVDFLFE 521 (639)
Q Consensus 507 KWKp~~~nTvDF~l~ 521 (639)
|||+. .++|+.+-
T Consensus 359 KiK~~--~~~dlvVv 371 (488)
T PHA02587 359 KFKEV--IDIDLEIV 371 (488)
T ss_pred EecCC--CceEEEEE
Confidence 99975 57998873
No 27
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=99.82 E-value=1.8e-19 Score=175.65 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=133.2
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCcc-ccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCCCCceeEEE
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNF-RRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYL 403 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~-~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~~~~~~yl 403 (639)
..+|+|-.-.-|+||||++..+.++++||+|.. ...+..||.... .+++|||+|.|..-+. ...+|+
T Consensus 20 ~~~w~~~~~P~G~R~lvv~~~g~t~~~~r~g~~~~~f~s~lP~g~~----------~~~~~g~tILDci~~~--~~~~yy 87 (186)
T cd09232 20 SEEWLVVPCPVGKRCLVVASKGKTVARSKNGRTLHRFSSALPGGSR----------KTSNSGYTILDCIYNE--DDRTYY 87 (186)
T ss_pred CcceEEEECcCceEEEEEEeCCEEEEEeCCCCEEEecccCCCCCCc----------CCCCCCCEEEEEecCC--CCCEEE
Confidence 458999999999999999998899999999984 334566664422 1177888888875432 357999
Q ss_pred EeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccc--
Q 006606 404 IYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKL-- 481 (639)
Q Consensus 404 iFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~~~~l-- 481 (639)
|+|||+++|.++.+.++.-|+..|+..+.+++.... ....++|.++.++||+... +.|-+.+...+
T Consensus 88 VlDii~w~g~~l~d~~~~~Rf~wl~skl~E~~~~~~-----------~~~~~~~~f~~~p~~~~~~-~~l~~~~~~~~~~ 155 (186)
T cd09232 88 VLDVLCWNGHPLYDCETEFRFFWLRSKLEELPELDE-----------PSEKNPFRFVPLPYFPCTK-ESLQSAYSGPLND 155 (186)
T ss_pred EEEEeeeCCcccccCCcchhHHHHHhhCCCcccccc-----------ccccCCceEEecCcccCcH-HHHHHHHhccccc
Confidence 999999999999999999999999999988764221 1346899999999999986 44445555677
Q ss_pred -cCCCceEEEEeCCCCCccCCCCCeEEEecC
Q 006606 482 -SHDADGLVFQGWDDPYVPRTHEGLLKWKYA 511 (639)
Q Consensus 482 -~h~~DGLIf~p~~spY~~G~~~~llKWKp~ 511 (639)
.|+.|||+|.+.++.|++|++..++||||.
T Consensus 156 ~~~e~DGLlFyhk~~~Y~~G~tPlvl~wKp~ 186 (186)
T cd09232 156 DPYELDGLLFYHKESHYTPGSTPLVLWLKDY 186 (186)
T ss_pred CCCCCceEEEEeCCCcccCcCCCcEEEecCC
Confidence 899999999999999999999999999983
No 28
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.82 E-value=1e-19 Score=169.60 Aligned_cols=113 Identities=19% Similarity=0.364 Sum_probs=97.7
Q ss_pred CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~l 218 (639)
.+|++||||+.+...+ ...|++|+++|+.|... ..+..++..+.+||+.....|++|+|||.+|+||||++
T Consensus 25 ~gi~~Vi~l~~~~~~~-----~~~~~~~~~ipi~D~~~----~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 25 LGITHVINVTNEVPNL-----NKKGFTYLGVPILDNTE----TKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATL 95 (138)
T ss_pred cCCCEEEEccCCCCCC-----CCCCCEEEEEECCCCCC----CChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHH
Confidence 5799999999765433 24689999999998422 22445677788999888888999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHh
Q 006606 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 260 (639)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~ 260 (639)
++||||...||++++|+++++++||.+.++++|+.+|..|+.
T Consensus 96 ~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 96 IIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 999999999999999999999999999999999999998875
No 29
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.81 E-value=7.1e-20 Score=169.37 Aligned_cols=116 Identities=24% Similarity=0.386 Sum_probs=97.9
Q ss_pred CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~l 218 (639)
.+|.+|||++.+.+.. ......+++|+++|+.|....| +..++..+.+||++....|++|+|||.+|+||||++
T Consensus 17 ~~I~~Vin~~~~~~~~--~~~~~~~~~~~~i~~~D~~~~~----~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 90 (133)
T PF00782_consen 17 LGITHVINLQEECPNP--YFYKPEGIEYLRIPIDDDPEEP----ILEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAV 90 (133)
T ss_dssp TTEEEEEECSSSSSTS--HHHTTTTSEEEEEEEESSTTSH----GGGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHH
T ss_pred CCCCEEEEccCCCcCc--hhcccCCCEEEEEEecCCCCcc----hHHHHHHHHHhhhhhhcccceeEEEeCCCcccchHH
Confidence 5899999999765432 3345679999999998842333 344555666788777778999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHh
Q 006606 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYH 260 (639)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~ 260 (639)
+|||||...+|++++|++++++.||.+.++..|+.+|.+++.
T Consensus 91 ~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~ 132 (133)
T PF00782_consen 91 AAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEK 132 (133)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999886
No 30
>PRK03180 ligB ATP-dependent DNA ligase; Reviewed
Probab=99.81 E-value=1.5e-19 Score=202.10 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=123.6
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCc-ccccccCCCCeEeeEEEEEecCCCCC--------
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDSR-------- 396 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~~-------- 396 (639)
.+|++++|+||.|++++..++++.+++|+++ .++..||+.... ..+ ...++|||||||.-...+..
T Consensus 204 ~~~~~E~K~DG~R~qih~~~~~v~l~SR~~~--d~T~~fPei~~~~~~~---~~~~~ILDGElv~~d~~g~~~~F~~l~~ 278 (508)
T PRK03180 204 GPAAVEAKLDGARVQVHRDGDDVRVYTRTLD--DITARLPEVVEAVRAL---PVRSLVLDGEAIALRPDGRPRPFQVTAS 278 (508)
T ss_pred CCeEEEEEEceeEEEEEEECCEEEEEeCCCC--cchhhhHHHHHHHHhC---CCcceeecceEEEECCCCCcCCHHHHHH
Confidence 4799999999999999999999999999998 457789976431 111 13679999999985321110
Q ss_pred -------------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecc
Q 006606 397 -------------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD 463 (639)
Q Consensus 397 -------------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~ 463 (639)
..++.|++||+|++||++++++||.+|++.|++.+. +.. ..+. +..
T Consensus 279 R~~~k~~~~~~~~~~pv~~~~FDlL~l~G~dl~~~pl~eRr~~L~~~~~-~~~---------~~~~---------~~~-- 337 (508)
T PRK03180 279 RFGRRVDVAAARATQPLSPFFFDALHLDGRDLLDAPLSERLAALDALVP-AAH---------RVPR---------LVT-- 337 (508)
T ss_pred HhccccchhhhcccCceEEEEEeehhcCCcchhcCCHHHHHHHHHHhhc-ccc---------cccc---------eec--
Confidence 134789999999999999999999999999999663 210 0000 111
Q ss_pred eeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCceEEEEE
Q 006606 464 FWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMNSVDFLF 520 (639)
Q Consensus 464 ~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKp~~~nTvDF~l 520 (639)
.....+..+++. ...++.||||+|..+++|.+|+ +..|+|||+. .|+|+.|
T Consensus 338 -~~~~~~~~~~~~---a~~~g~EGlm~K~~ds~Y~~GrR~~~WlK~K~~--~t~D~Vv 389 (508)
T PRK03180 338 -ADPAAAAAFLAA---ALAAGHEGVMVKSLDAPYAAGRRGAGWLKVKPV--HTLDLVV 389 (508)
T ss_pred -CCHHHHHHHHHH---HHHcCCceEEEeCCCCCcCCCCCCCCcEEEcCC--CceEEEE
Confidence 122355566664 5678999999999999999996 5799999984 6999998
No 31
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=99.80 E-value=3e-19 Score=177.02 Aligned_cols=166 Identities=24% Similarity=0.383 Sum_probs=115.5
Q ss_pred hhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCC-cccccccCCCCeEeeEEEEEec-CCC---
Q 006606 320 LQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDK-LPD--- 394 (639)
Q Consensus 320 l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~-~~~~~~~~~~~tlLDGElV~d~-~~~--- 394 (639)
+..+ ...|++++|+||+|+++...++++.+++|++..+ +..||+... ..........+++||||||... ..+
T Consensus 14 ~~~~-~~~~~~e~K~DG~R~~i~~~~~~v~~~SR~g~~~--~~~~~~l~~~l~~~~~~~~~~~vLDGElv~~d~~~~~~~ 90 (202)
T PF01068_consen 14 LKKF-GGPWYVEPKYDGVRCQIHKDGGGVRLFSRNGKDI--TSQFPELAEALRELLFPDGPDFVLDGELVVLDPNTGSPL 90 (202)
T ss_dssp HHHT-TSCEEEEEEESSEEEEEEEETTEEEEEETTSSB---GGGHHHHHHHHHHHBCTSCTEEEEEEEEEEBETTTSSBC
T ss_pred HHhc-CCCeEEEEeEeeEEeeeeeccccceeecccccch--hhHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCcch
Confidence 3444 6789999999999999999999999999999833 445554321 1111011134699999999832 110
Q ss_pred ------------CC-----CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCc
Q 006606 395 ------------SR-----RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPF 457 (639)
Q Consensus 395 ------------~~-----~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf 457 (639)
.. ...+.|++||++.++|.++++.||.+|+++|++.+..+. +
T Consensus 91 ~f~~~~~~~~~~~~~~~~~~~~~~~~vFDil~l~~~~l~~~p~~eR~~~L~~~~~~~~------------~--------- 149 (202)
T PF01068_consen 91 PFQELSGRLNRRSKKIPEQSEPLQFVVFDILYLDGKDLLDLPYEERRELLEELLEPPP------------P--------- 149 (202)
T ss_dssp CHHHHHHHHBHSSSCHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBG-BT------------S---------
T ss_pred hHHHHhhhhhhhcccchhccCcEEEEEEEEEEeCCeEeeeccHHHHHHHHHHhhccCC------------C---------
Confidence 00 146899999999999999999999999999999762211 1
Q ss_pred EEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCCC-CCeEEEe
Q 006606 458 RVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTH-EGLLKWK 509 (639)
Q Consensus 458 ~I~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~-~~llKWK 509 (639)
.+...+.+...+.+++.+-+.....++.||||++..+++|.+|+. ..|+|+|
T Consensus 150 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkrs~~w~K~K 202 (202)
T PF01068_consen 150 RIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKRSSGWLKVK 202 (202)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEEEEEEEEEE
T ss_pred ceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCcCCCcEEEC
Confidence 133444444444333333222356789999999999999999975 8999998
No 32
>PLN03113 DNA ligase 1; Provisional
Probab=99.80 E-value=4.7e-19 Score=203.72 Aligned_cols=175 Identities=18% Similarity=0.249 Sum_probs=127.2
Q ss_pred hhhhcccceeeeecCceeEEEEEEE-CCEEEEEeCCCccccccCcCCCcCCc-ccccccCCCCeEeeEEEEEecCCCC--
Q 006606 320 LQLLRQRYYYATWKADGTRYMMLIT-IDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS-- 395 (639)
Q Consensus 320 l~~l~~~~Y~V~eK~DG~R~ll~i~-~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~-- 395 (639)
+..+...+|++++|+||.|++++.. ++++.+++|+++ .++-.||+.... ..+......++|||||||.....+.
T Consensus 385 l~~~~g~~~~~E~KyDGeR~QiH~~~~g~v~lfSRn~e--d~T~~fPel~~~~~~~~~~~~~~~ILDGEiVa~d~~~~~~ 462 (744)
T PLN03113 385 VNKFQDMEFTCEYKYDGERAQIHFLEDGSVEIYSRNAE--RNTGKYPDVVVAISRLKKPSVKSFILDCELVAYDREKKKI 462 (744)
T ss_pred hhccCCCCEEEEEeeccceEEEEEecCCEEEEEeCCCC--cccccchhHHHHHHHhccccCCCEEEEeEEEEEECCCCCc
Confidence 3445556899999999999999875 567999999998 457889976431 1111111367999999998542111
Q ss_pred ------------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCc
Q 006606 396 ------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPF 457 (639)
Q Consensus 396 ------------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf 457 (639)
.+.++.|++||||++||++++++||.+|+++|++.+.. .. +
T Consensus 463 lpFq~Lq~R~rk~~~~~~~~~pv~~~aFDlLylnG~~L~~~PL~eRR~~L~~~~~~-~~-----------~--------- 521 (744)
T PLN03113 463 LPFQILSTRARKNVVMSDIKVDVCIFAFDMLYLNGQPLIQEQLKIRREHLYESFEE-DP-----------G--------- 521 (744)
T ss_pred CCHHHHHhhhccccchhccccceEEEEEeccccCccChhcCCHHHHHHHHHHHhcc-CC-----------C---------
Confidence 01346899999999999999999999999999996632 10 0
Q ss_pred EEEecceee---chhHHHHHHHhcccccCCCceEEEEeC--CCCCccCC-CCCeEEEecCCC----ceEEEEE
Q 006606 458 RVRRKDFWL---LSTVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPRT-HEGLLKWKYARM----NSVDFLF 520 (639)
Q Consensus 458 ~I~~K~~~~---~~~~~~l~~~~~~~l~h~~DGLIf~p~--~spY~~G~-~~~llKWKp~~~----nTvDF~l 520 (639)
.+.+.+... ...+..+|+. ...++.||||+|.. +++|.+|+ +..|||||+..+ .|+|+.+
T Consensus 522 ~i~~~~~~~~~~~ee~~~~~~~---ai~~g~EGlmvK~l~~dS~Y~pGkRs~~WlKlK~dy~~~~~dtlDlVv 591 (744)
T PLN03113 522 FFQFATAITSNDLEEIQKFLDA---AVDASCEGLIIKTLNKDATYEPSKRSNNWLKLKKDYMESIGDSLDLVP 591 (744)
T ss_pred cEEEeeeeccCCHHHHHHHHHH---HHHcCCceEEEeccCCCCCccCCCCCCCeEEEechhhccccccccEEE
Confidence 123333332 2344556654 57789999999985 78999994 679999998655 4999986
No 33
>PRK01109 ATP-dependent DNA ligase; Provisional
Probab=99.80 E-value=4.4e-19 Score=202.15 Aligned_cols=166 Identities=17% Similarity=0.275 Sum_probs=124.8
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccC-CCCeEeeEEEEEec-CCCCC-------
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKT-HHFTLLDGEMIIDK-LPDSR------- 396 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~-~~~tlLDGElV~d~-~~~~~------- 396 (639)
.+|++++|+||.|+++++.++++.+++|+++ .++..||+.... +.... ..++|||||||... ..+..
T Consensus 248 ~~~~~E~K~DG~R~qih~~~~~v~l~SR~~~--d~T~~~pel~~~--~~~~~~~~~~ILDGElv~~d~~~g~~~~F~~l~ 323 (590)
T PRK01109 248 GEALVEYKYDGERAQIHKKGDKVKIFSRRLE--NITHQYPDVVEY--AKEAIKAEEAIVEGEIVAVDPETGEMRPFQELM 323 (590)
T ss_pred CCeEEEecCCceEEEEEEcCCEEEEEeCCch--hhccccchHHHH--HHHhcCccceEEeeeEEEEECCCCcccChHHHh
Confidence 4799999999999999999999999999988 457789986432 11112 36899999999854 21110
Q ss_pred -------------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecc
Q 006606 397 -------------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKD 463 (639)
Q Consensus 397 -------------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~ 463 (639)
..++.|++||||++||+++++.||.+|+++|++.+. +.. . +...+
T Consensus 324 ~R~r~~~~~~~~~~~p~~~~vFDiL~l~g~~l~~~pl~eRr~~L~~~~~-~~~------------~---------~~~~~ 381 (590)
T PRK01109 324 HRKRKYDIEEAIKEYPVNVFLFDLLYVDGEDLTDKPLPERRKKLEEIVK-END------------K---------VKLAE 381 (590)
T ss_pred hcccccchhhhcccCceEEEEEEEEEECCcchhhCcHHHHHHHHHHhcC-CCC------------c---------eEEee
Confidence 125689999999999999999999999999999652 211 0 22333
Q ss_pred eeech---hHHHHHHHhcccccCCCceEEEEeC--CCCCccC-CCCCeEEEecC----CCceEEEEE
Q 006606 464 FWLLS---TVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYA----RMNSVDFLF 520 (639)
Q Consensus 464 ~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~--~spY~~G-~~~~llKWKp~----~~nTvDF~l 520 (639)
....+ .+..+|+ ....++.||||+|.. +++|.+| |+..|+|+|+. ...|+|+.+
T Consensus 382 ~~~~~~~~~~~~~~~---~a~~~g~EGiv~K~~~~ds~Y~~g~Rs~~WlK~K~dy~~~~~~~~Dlvv 445 (590)
T PRK01109 382 RIITDDVEELEKFFH---RAIEEGCEGLMAKSLGKDSIYQAGARGWLWIKYKRDYQSEMADTVDLVV 445 (590)
T ss_pred eEecCCHHHHHHHHH---HHHHcCCceEEEecCCCCCCcCCCCCCccHHHhhHHhhcccCCceeEEE
Confidence 33333 3445555 357899999999999 9999999 57789999973 456899887
No 34
>PRK09632 ATP-dependent DNA ligase; Reviewed
Probab=99.79 E-value=1.6e-18 Score=199.34 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=127.0
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCc-ccccccCCCCeEeeEEEEEecCCCC------
Q 006606 323 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS------ 395 (639)
Q Consensus 323 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~------ 395 (639)
+...+|+++.|+||+|+++.+.++++.|++|+++ .++..||+.... ..+ ...++|||||||+....+.
T Consensus 474 ~~~~~w~~E~K~DG~R~~~~~~~g~vrL~SRnG~--d~T~~fPel~~~~~~l---~~~~~ILDGEiVvld~~G~~~F~~L 548 (764)
T PRK09632 474 LKASQWAFEGKWDGYRLLAEADHGALRLRSRSGR--DVTAEYPELAALAEDL---ADHHVVLDGEIVALDDSGVPSFGLL 548 (764)
T ss_pred CCCCCEEEEEEECceeEEEEEeCCEEEEEeCCCC--CccccchhHHHHHhhC---CCcceeeeeEEEEeCCCCCCCHHHH
Confidence 4456899999999999999999999999999998 447789976432 122 1358999999998543221
Q ss_pred ----CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHH
Q 006606 396 ----RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVN 471 (639)
Q Consensus 396 ----~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~ 471 (639)
...++.|++||+|++||++++++||.+|++.|++.+... . .+...+.+.. +..
T Consensus 549 q~r~~~~~v~y~vFDLL~lnG~dL~~~Pl~eRR~~L~~l~~~~-~---------------------~i~~s~~~~~-~~~ 605 (764)
T PRK09632 549 QNRGRDTRVEFWAFDLLYLDGRSLLRKPYRDRRKLLEALAPSG-G---------------------SLTVPPLLPG-DGA 605 (764)
T ss_pred hhhhhcCCeEEEEEeeeccCCcccccCCHHHHHHHHHHhhCCC-C---------------------cEEecceecc-cHH
Confidence 113589999999999999999999999999999966311 0 0333333332 345
Q ss_pred HHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCceEEEEE
Q 006606 472 KLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMNSVDFLF 520 (639)
Q Consensus 472 ~l~~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKp~~~nTvDF~l 520 (639)
.+|+. ...++.||||+|..+|+|.+|+ +..|+|.|+. .+.||.|
T Consensus 606 ~~l~~---a~~~GlEGIVaKr~dS~Y~pGrRs~~WlKiK~~--~~~e~VI 650 (764)
T PRK09632 606 EALAY---SRELGWEGVVAKRRDSTYQPGRRSSSWIKDKHW--RTQEVVI 650 (764)
T ss_pred HHHHH---HHHcCCcEEEEeCCCCCCCCCCcCCCeEEEecC--CceEEEE
Confidence 67764 4678999999999999999996 7899999965 6889987
No 35
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.78 E-value=1.3e-18 Score=161.73 Aligned_cols=118 Identities=20% Similarity=0.267 Sum_probs=106.6
Q ss_pred CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~l 218 (639)
.+|..|||.|-+.+... + .||+|.++|+.|. | ...+..|++.+.+.|++....|++.||||.||++||+++
T Consensus 41 ~~It~IiNat~E~pn~~---l--~~~qy~kv~~~D~---p-~~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsL 111 (198)
T KOG1718|consen 41 RKITCIINATTEVPNTS---L--PDIQYMKVPLEDT---P-QARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASL 111 (198)
T ss_pred cCceEEEEcccCCCCcc---C--CCceeEEEEcccC---C-cchhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHH
Confidence 68999999997654321 2 4899999999985 4 367899999999999999899999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhhcCCC
Q 006606 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLD 265 (639)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~ 265 (639)
+.||||++.+|++.||..+++.+||.+.||.||++||..|+..+..+
T Consensus 112 ClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 112 CLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999988765
No 36
>PRK05972 ligD ATP-dependent DNA ligase; Reviewed
Probab=99.77 E-value=2.9e-18 Score=198.91 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=126.5
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCC----------
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDS---------- 395 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~---------- 395 (639)
.+|+++.|+||+|+++++.++++.|++|+++ .++-.||+.... +..-....+|||||||+....+.
T Consensus 249 ~~W~~E~K~DG~R~~a~~~gg~vrL~SRnG~--d~T~~fPel~~~--~~~l~~~~~ILDGEIVvld~~G~~~F~~Lq~r~ 324 (860)
T PRK05972 249 DGWIYEIKFDGYRILARIEGGEVRLFTRNGL--DWTAKLPALAKA--AAALGLPDAWLDGEIVVLDEDGVPDFQALQNAF 324 (860)
T ss_pred CceEEEeeeCcEEEEEEEECCEEEEEeCCCC--ccccccHHHHHH--HHhcCCCceeEeEEEEEECCCCCCCHHHHHHHh
Confidence 5899999999999999999999999999998 446789876432 11112367899999998543221
Q ss_pred ---CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHH
Q 006606 396 ---RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 472 (639)
Q Consensus 396 ---~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ 472 (639)
....+.|++||||++||++++++||.+|+++|++.+.. . .++ .|+..+.+.. ....
T Consensus 325 ~~~~~~~v~f~vFDLL~l~G~dL~~~PL~eRr~~L~~ll~~-~----------~~~---------~i~~s~~~~~-~g~~ 383 (860)
T PRK05972 325 DEGRTEDLVYFAFDLPFLGGEDLRELPLEERRARLRALLEA-A----------RSD---------RIRFSEHFDA-GGDA 383 (860)
T ss_pred hccCCCceEEEEEeccccCCcccccCCHHHHHHHHHHHhhh-c----------CCC---------cEEEeceecc-hHHH
Confidence 11357899999999999999999999999999996632 1 011 1444444443 3356
Q ss_pred HHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEE
Q 006606 473 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLF 520 (639)
Q Consensus 473 l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF~l 520 (639)
+|+. ...++.||||+|..+++|.+|++..|||+|+. .+.+|.|
T Consensus 384 ll~~---a~~~GlEGIVaKr~dS~Y~~GRs~~WlKiK~~--~~~E~VI 426 (860)
T PRK05972 384 VLAS---ACRLGLEGVIGKRADSPYVSGRSEDWIKLKCR--ARQEFVI 426 (860)
T ss_pred HHHH---HHHcCCceEEEeCCCCCCCCCCCCCcEEEecC--CCceEEE
Confidence 7764 46789999999999999999999999999974 5678877
No 37
>COG1793 CDC9 ATP-dependent DNA ligase [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.4e-18 Score=187.87 Aligned_cols=165 Identities=22% Similarity=0.256 Sum_probs=124.7
Q ss_pred ceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCC-cCCc-ccccccCCCCeEeeEEEEEecCCCC---------
Q 006606 327 YYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPC-RNSN-EGLGEKTHHFTLLDGEMIIDKLPDS--------- 395 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~-~~~~-~~~~~~~~~~tlLDGElV~d~~~~~--------- 395 (639)
+|.+++|+||+|+++.+.++++.|++|++. .++-.||. .... ..+ ...++|||||+|+....+.
T Consensus 134 ~w~~E~K~DG~R~q~h~~~~~vrl~SR~g~--d~T~~fP~~~~~~~~~l---~~~~~iiDGE~V~~~~~~~~~F~~Lq~r 208 (444)
T COG1793 134 DWAYEEKFDGYRVQIHIDGGKVRLYSRNGE--DWTGRFPDILEAAAEAL---PADDFILDGEIVVLDEEGRLDFQALQQR 208 (444)
T ss_pred CEEEEEeeceEEEEEEEcCCEEEEEeCCCc--cchhhChHHHHHHHhcC---CCCceEEeeeEEEECCCCCCCHHHHHHH
Confidence 699999999999999999999999999998 55778993 2211 111 2457999999999653110
Q ss_pred -----------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecce
Q 006606 396 -----------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDF 464 (639)
Q Consensus 396 -----------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~ 464 (639)
...+..|++||+|++||.+++.+||.+|++.|++.+..... . ...+ .+. +
T Consensus 209 ~~~k~~v~~~~~~~~~~~~aFDlL~~dG~dL~~~pl~eRr~~Le~lv~~~~~--~-----~~~~---------~i~---~ 269 (444)
T COG1793 209 LRRKYDVAKLRRETPLVLFAFDLLYLDGEDLRGLPLEERRALLEELVKSSDK--I-----EIAE---------RIP---F 269 (444)
T ss_pred hhhccchhhhccCCceEEEEEEEEeECCcccccCchHHHHHHHHHHhccccc--c-----cccc---------cee---c
Confidence 11357899999999999999999999999999997743200 0 0000 022 2
Q ss_pred eechhHHHHHHHhcccccCCCceEEEEeCCCCCccC-CCCCeEEEecCCCceEEEEE
Q 006606 465 WLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPR-THEGLLKWKYARMNSVDFLF 520 (639)
Q Consensus 465 ~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G-~~~~llKWKp~~~nTvDF~l 520 (639)
........+|+. ...++.||||.|..++||.+| +...|+|||+. .|.||.|
T Consensus 270 ~~~~~~~~~~~~---a~~~g~EGvv~K~~ds~Y~~g~R~~~W~K~K~~--~~~d~vv 321 (444)
T COG1793 270 SDAEEGEAFLEA---AIELGLEGVVAKRPDSPYRAGGRSNKWLKVKRD--ETLDLVV 321 (444)
T ss_pred cChhhHHHHHHH---HHhcCceEEEEeCCCCCcCCCCCCCcceEeccC--CcccEEE
Confidence 334455667764 567899999999999999955 58899999986 8999998
No 38
>PHA00454 ATP-dependent DNA ligase
Probab=99.76 E-value=9e-18 Score=177.85 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=127.3
Q ss_pred CCcc-ccccchhhhhhhcc-c-ceeeeecCceeEEEEEEECCE-EEEEeCCCccccccCcCCCcCCcc-------cccc-
Q 006606 308 PGSH-PVSLNSDNLQLLRQ-R-YYYATWKADGTRYMMLITIDG-CYLIDRCFNFRRVQMRFPCRNSNE-------GLGE- 375 (639)
Q Consensus 308 PGsq-PVsl~r~~l~~l~~-~-~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~~v~~~FP~~~~~~-------~~~~- 375 (639)
|+++ -|+|+.++++.... . .|++++|+||+|+++++.+++ +.|++|++. .||...... .+.+
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~g~~~~E~K~DG~R~~~~~~~~~~v~l~SR~g~------~~p~l~~~~~~~~~~~~~~~~ 79 (315)
T PHA00454 6 TNPFRAVDFNESAIEKALEKAGYLIADVKYDGVRGNIVVDNTADHGWLSREGK------TIPALEHLNGFDRRWAKLLND 79 (315)
T ss_pred CCccccccCCHHHHHHHHHhCCcEEEEEccceEEEEEEEcCCCeEEEEeCCCC------cccchhhhhhhhhhhhhhhhh
Confidence 6665 78999999976543 3 455555999999999998765 999999996 245432110 0000
Q ss_pred ---cCCCCeEeeEEEEEecCCC----------------CCCceeEEEEeEeeecC----Ceec---cCCCHHHHHHHHHH
Q 006606 376 ---KTHHFTLLDGEMIIDKLPD----------------SRRQERRYLIYDMMAIN----QASV---IERPFYERWKMLEK 429 (639)
Q Consensus 376 ---~~~~~tlLDGElV~d~~~~----------------~~~~~~~yliFDiL~~~----G~~l---~~~pf~eR~~~L~~ 429 (639)
....+++||||+|+...+. ....++.|++||+|.+| |.++ ..+||.+|.++|++
T Consensus 80 ~~~~l~~~~vLDGElv~~~~~f~~~~~~l~~k~~~~~~~~~~~v~~~vFDll~l~~~~~g~~l~~l~~~pl~~Rr~~L~~ 159 (315)
T PHA00454 80 DRCIFPDGFMLDGELMVKGVDFNTGSGLLRRKWKVLFELHLKKLHVVVYDVTPLDVLESGEDYDVMSLLMYEHVRAMVPL 159 (315)
T ss_pred hhhcCCCCeEEEEEEEecCCCHHHHHHHhccCccchhhhccCceEEEEEEeeEeccccCCccccccccccHHHHHHHHHH
Confidence 0124789999999853211 00135789999999999 6665 78999999999998
Q ss_pred HhcCccccccccccccCCCCccCCCCCcEEEecceeech---hHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeE
Q 006606 430 EVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLL 506 (639)
Q Consensus 430 ~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~ll 506 (639)
.+. +.. . ..++..+.+..+ .+..+++. ...++.||||++..+++|.+|+...|+
T Consensus 160 l~~-~~~------------~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~EGiv~K~~ds~Y~~Grr~~~~ 216 (315)
T PHA00454 160 LME-YFP------------E-------IDWFLSESYEVYDMESLQELYEK---KRAEGHEGLVVKDPSLIYRRGKKSGWW 216 (315)
T ss_pred HHh-hCC------------C-------cceEeeceEEcCCHHHHHHHHHH---HHhCCCceEEEeCCCCCCCCCCccCcE
Confidence 542 110 0 013444555443 44555654 567899999999999999999876788
Q ss_pred EEecCCCceEEEEE
Q 006606 507 KWKYARMNSVDFLF 520 (639)
Q Consensus 507 KWKp~~~nTvDF~l 520 (639)
|+|+. .++|+.|
T Consensus 217 K~K~~--~~~d~vI 228 (315)
T PHA00454 217 KMKPE--CEADGTI 228 (315)
T ss_pred EEccc--CceeEEE
Confidence 99965 5999997
No 39
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.75 E-value=1.1e-17 Score=155.57 Aligned_cols=113 Identities=16% Similarity=0.320 Sum_probs=94.3
Q ss_pred CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~l 218 (639)
.+|++||||+.+... ......|++|+++|+.|.+ .+. +...+..+.+||+.....+++|+|||.+|.||||++
T Consensus 26 ~gi~~VI~l~~~~~~---~~~~~~~~~~~~~~~~D~~-~~~---~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 26 LGITHVLNVAKEVPN---ENLFLSDFNYLYVPILDLP-SQD---ISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred cCCCEEEEcccCCCC---cccCCCCceEEEEEceeCC-CCC---hHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHH
Confidence 689999999976533 3345679999999999863 222 233445556777766667899999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006606 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 258 (639)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (639)
+++|||..++|++++|++++++.||...++++|+.||.+|
T Consensus 99 ~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~ 138 (139)
T cd00127 99 VIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEY 138 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999876
No 40
>PRK09125 DNA ligase; Provisional
Probab=99.73 E-value=1.2e-16 Score=166.41 Aligned_cols=207 Identities=24% Similarity=0.329 Sum_probs=132.2
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCC-----------C
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP-----------D 394 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~-----------~ 394 (639)
.+|++++|+||+|++. +++.|++|+++- ++. |.... . ...+++||||||.-..+ .
T Consensus 43 ~~~~~E~K~DG~R~~~----~~v~l~SR~g~~--it~--p~~~~-~-----~~~~~vLDGElv~~~~~F~~l~~r~~~k~ 108 (282)
T PRK09125 43 SGYLVSEKLDGVRAYW----DGKQLLTRQGNP--IAA--PAWFT-A-----GFPPFPLDGELWAGRGQFEAISSIVRDKT 108 (282)
T ss_pred hhEEEEeeeeeEeEEE----CCeEEEcCCCCc--CCC--chhHH-h-----cCCCccEeEEEEeCCCCHHHHHHHHccCC
Confidence 5899999999999962 468899999872 121 32111 1 13478999999963210 0
Q ss_pred CC---CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeech---
Q 006606 395 SR---RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS--- 468 (639)
Q Consensus 395 ~~---~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~--- 468 (639)
.. ..++.|++||+++++| ||.+|++.|++.+.. . ..+. |+..+.....
T Consensus 109 ~~~~~~~~v~~~vFDll~~~g------pl~eRr~~L~~li~~-~----------~~~~---------i~~~~~~~~~~~~ 162 (282)
T PRK09125 109 PDDAAWRKVRFMVFDLPDAPG------DFEERLAVLKKLLAK-L----------PSPY---------IKIIEQIRVRSEA 162 (282)
T ss_pred cchhhhcccEEEEEEcCCCCC------CHHHHHHHHHHHHhh-C----------CCCc---------EEEEeEEEcCCHH
Confidence 00 1357999999999876 999999999996631 1 0111 3444444443
Q ss_pred hHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEEEe-c-CCc-----eeEEEE-eCCeeee
Q 006606 469 TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVT-D-DDR-----QLLYVF-ERGKKKL 540 (639)
Q Consensus 469 ~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF~l~~~-~-~~~-----~~L~~~-~~g~~~~ 540 (639)
.+..+++. ...++.||||++..+++|.+|++..|+|+||. .+.|+.|--- . .++ +.|.+. ..|....
T Consensus 163 ~~~~~~~~---~~~~G~EGiV~K~~ds~Y~~GRs~~wlKiK~~--~~~d~vIvG~~~g~Gk~~g~~gsllv~~~~g~~~~ 237 (282)
T PRK09125 163 ALQQFLDQ---IVAAGGEGLMLHRPDAPYEAGRSDDLLKLKPY--YDAEATVIGHLPGKGKFAGMLGALLVETPDGREFK 237 (282)
T ss_pred HHHHHHHH---HHHcCCCEEEEeCCCCCCcCCCCCCcEEEEec--CCCcEEEEEEEcCCCcccCceeeEEEEeCCCCEEE
Confidence 34455654 56789999999999999999999999999975 5789987222 1 111 123333 2332211
Q ss_pred ecCceeEecC--CCCCCCCceEEEEEEeC--CCC---eeEEEEEeCC
Q 006606 541 MEGSSVEFTD--REPSFYSGKIIECTWDP--DVQ---LWKCMRIRTD 580 (639)
Q Consensus 541 ~~~~~~~f~~--~~~~~~dg~IvEc~~d~--~~~---~W~~~R~R~D 580 (639)
+ +. -|++ .....+-|+|+++.|.. .+| .=+|.++|+|
T Consensus 238 V-gs--G~t~~~r~~~~~~g~~~~V~y~e~t~~g~lR~P~f~g~R~D 281 (282)
T PRK09125 238 I-GS--GFSDAERENPPKIGSIITYKYRGLTKNGLPRFASFLRVRED 281 (282)
T ss_pred e-CC--CCCHHHhcCCCCCCCEEEEEecccCCCCcccCCEEEEEecC
Confidence 1 11 2443 22234568999999943 123 2458888887
No 41
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=99.71 E-value=5.7e-17 Score=157.50 Aligned_cols=143 Identities=22% Similarity=0.317 Sum_probs=99.7
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCC-----------
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP----------- 393 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~----------- 393 (639)
...|++++|+||+|+++ .++ .+++|+++-+ +. +.. -..+ ...++||||||.-..+
T Consensus 15 ~~~~~~e~K~DG~R~~~--~~~--~~~SR~g~~~--t~--~~~-~~~~-----l~~~ilDGElv~~~~~f~~l~~~~~~~ 80 (174)
T cd07896 15 ISGYLVSEKLDGVRAYW--DGK--QLLSRSGKPI--AA--PAW-FTAG-----LPPFPLDGELWIGRGQFEQTSSIVRSK 80 (174)
T ss_pred hHHeeechhhceEEEEE--ecc--EEEecCCcCC--CC--CHH-HHhh-----CCCCccCceEEcCCCCHHHHHHHHhcC
Confidence 35899999999999975 332 8999998732 21 110 0112 2349999999973210
Q ss_pred CC---CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeech--
Q 006606 394 DS---RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLS-- 468 (639)
Q Consensus 394 ~~---~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~-- 468 (639)
.. ....+.|++||+|. +..||.+|++.|++.+..... + .++..+.+...
T Consensus 81 ~~~~~~~~~~~f~vFDil~------~~~p~~eR~~~L~~~i~~~~~-----------~---------~~~~~~~~~~~~~ 134 (174)
T cd07896 81 KPDDEDWRKVKFMVFDLPS------AKGPFEERLERLKNLLEKIPN-----------P---------HIKIVPQIPVKSN 134 (174)
T ss_pred CCChhhcccceEEEEeCCC------CCCCHHHHHHHHHHHHHhCCC-----------C---------cEEEEeeeeeCCH
Confidence 10 12468999999998 789999999999997632100 0 13444444443
Q ss_pred -hHHHHHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEec
Q 006606 469 -TVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKY 510 (639)
Q Consensus 469 -~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp 510 (639)
.+..+++ ....++.||||++..+++|.+|++..|+||||
T Consensus 135 ~~i~~~~~---~~~~~g~EGlv~K~~ds~Y~~gR~~~wlK~Kp 174 (174)
T cd07896 135 EALDQYLD---EVVAAGGEGLMLRRPDAPYETGRSDNLLKLKP 174 (174)
T ss_pred HHHHHHHH---HHHhcCCCeEEEecCCCcccCCcCCCceeeCC
Confidence 3344554 35778999999999999999999999999998
No 42
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.69 E-value=3.4e-16 Score=140.30 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=115.5
Q ss_pred CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHH
Q 006606 102 GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181 (639)
Q Consensus 102 ~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~ 181 (639)
.+||....|.+.+++. .++.+++ .++.+|+.++ ++.||...+++.||..+..|+.| |.+|+..
T Consensus 17 MrFLIThnPtnaTln~------------fieELkK--ygvttvVRVC--e~TYdt~~lek~GI~Vldw~f~d-g~ppp~q 79 (173)
T KOG2836|consen 17 MRFLITHNPTNATLNK------------FIEELKK--YGVTTVVRVC--EPTYDTTPLEKEGITVLDWPFDD-GAPPPNQ 79 (173)
T ss_pred eEEEEecCCCchhHHH------------HHHHHHh--cCCeEEEEec--ccccCCchhhhcCceEeeccccc-CCCCchH
Confidence 5899999997776665 3444443 5699999999 66899999999999999999988 5888889
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006606 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTF 258 (639)
Q Consensus 182 ~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (639)
.+..|+..+..-+. .++|.+|+|||.+|+||...++|..||+ .||..++|+++++++|.+++ |..|+..|.+|
T Consensus 80 vv~~w~~l~~~~f~--e~p~~cvavhcvaglgrapvlvalalie-~gmkyedave~ir~krrga~-n~kql~~leky 152 (173)
T KOG2836|consen 80 VVDDWLSLVKTKFR--EEPGCCVAVHCVAGLGRAPVLVALALIE-AGMKYEDAVEMIRQKRRGAI-NSKQLLYLEKY 152 (173)
T ss_pred HHHHHHHHHHHHHh--hCCCCeEEEEeecccCcchHHHHHHHHH-ccccHHHHHHHHHHHhhccc-cHHHHHHHHHh
Confidence 99999998766555 5789999999999999999999999999 69999999999999998776 56777777554
No 43
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.68 E-value=1.8e-16 Score=157.00 Aligned_cols=118 Identities=18% Similarity=0.284 Sum_probs=105.2
Q ss_pred CCceEEEEcCCCCCCCCcchhhcC-CcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKE-GIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGY 217 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~-gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~ 217 (639)
.+|+.|||+|... |..|++. .+.|..||+.|+ ....+.+|+.++..||++++.++..|||||.+|++||.|
T Consensus 196 ~gI~yviNVTpnl----pn~fe~~g~f~YkqipisDh----~Sqnls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvT 267 (343)
T KOG1717|consen 196 YGIKYVINVTPNL----PNNFENNGEFIYKQIPISDH----ASQNLSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVT 267 (343)
T ss_pred cCceEEEecCCCC----cchhhcCCceeEEeeeccch----hhhhhhhhhHHHHHHHHHhhccCCcEEEeeeccccchhH
Confidence 5799999999544 3344443 478999999987 347799999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhhcCC
Q 006606 218 MIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL 264 (639)
Q Consensus 218 li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~ 264 (639)
+++||||.+...+..+|.++|+.++..+.||.+|+-||..|...+..
T Consensus 268 vtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 268 VTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred HHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999887654
No 44
>PRK12361 hypothetical protein; Provisional
Probab=99.68 E-value=3.5e-16 Score=177.96 Aligned_cols=120 Identities=20% Similarity=0.395 Sum_probs=99.3
Q ss_pred CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~l 218 (639)
.+|++|||||.+.+... ......|++|+++|+.|+ ..|+.+++ +.+.+||++..+.+++|+|||++|+|||+++
T Consensus 119 ~gI~~Vldlt~E~~~~~-~~~~~~~i~yl~iPi~D~-~~p~~~~l----~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~v 192 (547)
T PRK12361 119 NKITAILDVTAEFDGLD-WSLTEEDIDYLNIPILDH-SVPTLAQL----NQAINWIHRQVRANKSVVVHCALGRGRSVLV 192 (547)
T ss_pred cCCCEEEEccccccccc-ccccccCceEEEeecCCC-CCCcHHHH----HHHHHHHHHHHHCCCeEEEECCCCCCcHHHH
Confidence 58999999996533211 122245899999999996 67776544 4556788877778899999999999999999
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhhcCC
Q 006606 219 IVHFLMRS-QSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRL 264 (639)
Q Consensus 219 i~aYLm~~-~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~ 264 (639)
++||||.+ .++++++|++.++++||.+.+|+.|+++|.++|....-
T Consensus 193 v~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~ 239 (547)
T PRK12361 193 LAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKL 239 (547)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Confidence 99999976 48999999999999999999999999999999887554
No 45
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.67 E-value=4.8e-16 Score=162.61 Aligned_cols=122 Identities=20% Similarity=0.367 Sum_probs=106.2
Q ss_pred CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHH
Q 006606 139 RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYM 218 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~l 218 (639)
.+|..|+|++.....+. -....+|+|+.+++.|. |. .+|..+++.+.+||+.+...++.|+|||.+|++||+++
T Consensus 99 ~~it~vln~~~~~~~~~--~~~~~~~~y~~i~~~D~---~~-~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~ 172 (285)
T KOG1716|consen 99 LGITHVLNVSSSCPNPR--FLKEQGIKYLRIPVEDN---PS-TDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATL 172 (285)
T ss_pred cCCCEEEEecccCCccc--cccccCceEEeccccCC---cc-ccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHH
Confidence 58999999997654321 01223899999999874 43 56777999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhhcCCCC
Q 006606 219 IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDS 266 (639)
Q Consensus 219 i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~~ 266 (639)
++||||++.+|++++|+++++++||.+.||.+|+.||.++...+....
T Consensus 173 viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 173 VIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999877653
No 46
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=99.58 E-value=1.2e-14 Score=163.48 Aligned_cols=139 Identities=22% Similarity=0.313 Sum_probs=99.9
Q ss_pred eCCCccccccCcCCCcCCc-ccccccCCCCeEeeEEEEEecCCCC-------------CCceeEEEEeEeeecCCeeccC
Q 006606 352 DRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDS-------------RRQERRYLIYDMMAINQASVIE 417 (639)
Q Consensus 352 dR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~-------------~~~~~~yliFDiL~~~G~~l~~ 417 (639)
+|++. ..+-.||+.... ..+ ...++|||||||+....+. ...+++|++||+|++||+++++
T Consensus 1 SRng~--d~T~~fPel~~~~~~l---~~~~~ILDGElVvld~~G~~~F~~Lq~~~~~~~~~pv~~~vFDlL~l~G~dL~~ 75 (552)
T TIGR02776 1 TRNGH--DWTKRFPEIVKALALL---KLLPAWIDGEIVVLDERGRADFAALQNALSAGASRPLTYYAFDLLFLSGEDLRD 75 (552)
T ss_pred CCCcC--cchhhhHHHHHHHhhC---CCCCEEEEEEEEEECCCCCCCHHHHHHHHHhcccCceEEEEEeccccCCccccc
Confidence 47776 447789976442 111 2367999999998532221 1145799999999999999999
Q ss_pred CCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCC
Q 006606 418 RPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPY 497 (639)
Q Consensus 418 ~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY 497 (639)
+||.+|+++|++.+.. .. ++. +....... ...+.+|+. ...++.||||+|..+++|
T Consensus 76 ~Pl~eRr~~L~~ll~~-~~----------~~~---------i~~~~~~~-~~~~~~~~~---a~~~G~EGIV~K~~dS~Y 131 (552)
T TIGR02776 76 LPLEERKKRLKQLLKA-QD----------EPA---------IRYSDHFE-SDGDALLES---ACRLGLEGVVSKRLDSPY 131 (552)
T ss_pred CCHHHHHHHHHHHhhh-cC----------CCc---------EEEeeeec-ccHHHHHHH---HHHCCCceEEEeCCCCCC
Confidence 9999999999996632 10 111 22333322 233467764 467899999999999999
Q ss_pred ccCCCCCeEEEecCCCceEEEEEE
Q 006606 498 VPRTHEGLLKWKYARMNSVDFLFE 521 (639)
Q Consensus 498 ~~G~~~~llKWKp~~~nTvDF~l~ 521 (639)
.+||+..|+|+|+ ..+.||.|.
T Consensus 132 ~~GRs~~WlKlK~--~~~~e~vI~ 153 (552)
T TIGR02776 132 RSGRSKDWLKLKC--RRRQEFVIT 153 (552)
T ss_pred CCCCCcchhcccc--cccceEEEE
Confidence 9999999999997 457888873
No 47
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=99.57 E-value=5.8e-16 Score=164.27 Aligned_cols=288 Identities=22% Similarity=0.221 Sum_probs=170.6
Q ss_pred CCCCCCCCccccccchhhhhhhcccceeeeecCceeEEEEEEEC-----CEEEEEeCCCccccccCcCCCcCCccc---c
Q 006606 302 RGNMQFPGSHPVSLNSDNLQLLRQRYYYATWKADGTRYMMLITI-----DGCYLIDRCFNFRRVQMRFPCRNSNEG---L 373 (639)
Q Consensus 302 ~~~~~FPGsqPVsl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~-----~~vyLidR~~~~~~v~~~FP~~~~~~~---~ 373 (639)
....-|||+| +....+++..|...+|.||+|.||+|.++|+.. .+++-+.++...+. .+|....... +
T Consensus 37 ~~~k~~~~~~-~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~---~vp~~~~v~~fv~~ 112 (393)
T KOG2386|consen 37 YSTKTFPGSQ-RFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRG---VVPRTELVDKFVKL 112 (393)
T ss_pred CCcCCCCCcc-ccCHHHHHHHHHhcCceEEEEEeccceeeeeccccccccceeEEEeccCCcc---cCCCccchHHHHHH
Confidence 4455677777 888899999999999999999999999999953 25644445443222 2454322222 2
Q ss_pred cccCCCCeEeeEEEEEecCCCCCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCC
Q 006606 374 GEKTHHFTLLDGEMIIDKLPDSRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYD 453 (639)
Q Consensus 374 ~~~~~~~tlLDGElV~d~~~~~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~ 453 (639)
.+..+.+|.+|||||...-+. +.+...||||++|+.+|. .+..+-.+|++......+.+.. .+.++.. .+ .+
T Consensus 113 v~~f~~~~~~~~~LI~vhcth-G~NrtgyLI~~yL~~~~~-~s~~~aik~f~~~r~~gi~k~d-yi~~L~~----~~-~~ 184 (393)
T KOG2386|consen 113 VKGFVDDTKLDDELIGVHCTH-GLNRTGYLICAYLADVGG-YSSSEAIKRFADARPPGIEKQD-YIDALYS----RY-HD 184 (393)
T ss_pred HHHHHhcccCCCCEEEEeCCC-cccccceeeeeeeeeccC-ccHHHHHHHHHHhCCCccCchH-HHHHHhh----cc-cc
Confidence 334567899999999986544 236788999999998876 6666666666655544433321 1111110 00 13
Q ss_pred CCCcEEEecceeechhHHHHHHHhccccc-CCCceEEEEeCCCCC-ccCCCCCeEEEecCCCceEEEEEEEecCC--cee
Q 006606 454 LEPFRVRRKDFWLLSTVNKLLKEFIPKLS-HDADGLVFQGWDDPY-VPRTHEGLLKWKYARMNSVDFLFEVTDDD--RQL 529 (639)
Q Consensus 454 ~~pf~I~~K~~~~~~~~~~l~~~~~~~l~-h~~DGLIf~p~~spY-~~G~~~~llKWKp~~~nTvDF~l~~~~~~--~~~ 529 (639)
..||.+..+..-.-....++.. +... |..||+||++...|| ..|+...++||||-.+||+||.+...... .+.
T Consensus 185 ~~p~~vs~p~~~~~~~~~~~~~---~~~~~~~~Dg~i~t~~~~pg~~~g~~~~~~k~k~~~~n~~~~~~~~~~~q~~~~~ 261 (393)
T KOG2386|consen 185 IFPFKVSCPSMPDWKRSIKLKK---PVHKLHGNDGLIFTPAEIPGSKNGKQEALLKWKPFSLNTIDFGVKLEKPQPELGD 261 (393)
T ss_pred cccccccCCCCcchhhhhhhcc---ccccccccCCCcCCcccCccccccchhhhhcCCchhcCCcccceeecCCCCCccc
Confidence 4566666554433222222222 2222 999999999999999 58999999999999999999999776431 111
Q ss_pred EEEEeC--Cee-------eeecCceeEecCCCCCCCCceEEEEEEeCCC-----CeeEEEEEeCCCCCCChHHHHHHHHH
Q 006606 530 LYVFER--GKK-------KLMEGSSVEFTDREPSFYSGKIIECTWDPDV-----QLWKCMRIRTDKSTPNDINTYRKVMR 595 (639)
Q Consensus 530 L~~~~~--g~~-------~~~~~~~~~f~~~~~~~~dg~IvEc~~d~~~-----~~W~~~R~R~DK~~pN~~~tv~~v~~ 595 (639)
|..... |.. ..+.. ..| ...+..+|.+-..-.|.+. .+|++.+.|.+...|+..++....++
T Consensus 262 l~~~~~~~g~~~~~r~~~~~~~~--~~y--~~~We~dg~~~~~L~~~~~~~~~~dR~~~~~~~~~~~~~~~~~~~~~~~~ 337 (393)
T KOG2386|consen 262 LQCKRKNEGAQPVSRENYKLLVF--EYY--EASWEADGTRYMMLIDGDGEYYDFDRWRFVKGRENLRKIREDSDTKVLHQ 337 (393)
T ss_pred hhhhhcccccCCccccchhhhhh--hhh--hhhhcccCcEEEEEecCCceeEechhhhHHHhhhhhhcccccccchhhhh
Confidence 111110 100 00000 001 1222334444333222111 16777666666666666666666666
Q ss_pred hcccCCCHHHHHH
Q 006606 596 SIRDNITEEVLLN 608 (639)
Q Consensus 596 SI~d~It~e~L~~ 608 (639)
++.|+....+.+.
T Consensus 338 tl~dge~~lD~l~ 350 (393)
T KOG2386|consen 338 TLLDGEMILDRLK 350 (393)
T ss_pred hhcccceeccccc
Confidence 6655554444443
No 48
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.56 E-value=2e-14 Score=156.52 Aligned_cols=148 Identities=23% Similarity=0.317 Sum_probs=124.4
Q ss_pred ccCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCC
Q 006606 100 IGGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPD 179 (639)
Q Consensus 100 I~~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~ 179 (639)
|+.+||+|.+|....-. ..|-+..+++..+..++.+-..|-||+. ++.|++..|.. ....+++.|+ .+|+
T Consensus 18 IT~rIIamsfPa~~~es-----~yRN~l~dV~~fL~s~H~~~y~vyNL~~-er~yd~~~f~g---~V~~~~~~Dh-~~P~ 87 (434)
T KOG2283|consen 18 ITSRIIAMSFPAEGIES-----LYRNNLEDVVLFLDSKHKDHYKVYNLSS-ERLYDPSRFHG---RVARFGFDDH-NPPP 87 (434)
T ss_pred eeeeEEEEeCCCCcchh-----hhcCCHHHHHHHHhhccCCceEEEecCc-cccCCcccccc---ceeecCCCCC-CCCc
Confidence 77899999999776322 3455678999999998878888999998 67899888864 3555899998 7999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCC-CHHHHHHHHHhcC---C--CccCCHHHHH
Q 006606 180 NASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSM-SVAQAIKKFAEVR---P--PGIYKNEYIE 253 (639)
Q Consensus 180 ~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~-s~~eAi~~~~~~R---p--~~i~~~~~l~ 253 (639)
.+.+..|++.+..|+. .++...|+|||++|.+|||+|||||||..... ++++|+.++.++| . .+...+.|.+
T Consensus 88 L~~l~~~c~~~~~WL~--~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~R 165 (434)
T KOG2283|consen 88 LELLCPFCKSMDNWLS--EDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRR 165 (434)
T ss_pred HHHHHHHHHCHHHHHh--cCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhH
Confidence 9999999999999998 67889999999999999999999999997666 5999999999999 4 3566677888
Q ss_pred HHHHHH
Q 006606 254 ALYTFY 259 (639)
Q Consensus 254 ~L~~~y 259 (639)
.++-+.
T Consensus 166 Yv~Y~~ 171 (434)
T KOG2283|consen 166 YVGYFS 171 (434)
T ss_pred HHHHHH
Confidence 774333
No 49
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=99.54 E-value=4.4e-14 Score=157.79 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=124.7
Q ss_pred hhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcC---CCcCCc----ccccccCCCCeEeeEEEEEe
Q 006606 318 DNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRF---PCRNSN----EGLGEKTHHFTLLDGEMIID 390 (639)
Q Consensus 318 ~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~F---P~~~~~----~~~~~~~~~~tlLDGElV~d 390 (639)
..++.+...++|+++|.||.|++|+.+++....++|||.-| +..| +..... .++...-...+||||||+..
T Consensus 242 ~~~e~m~~~~f~lEtK~DGERiQlHk~g~~~~yfSRNg~dy--T~~yg~s~~~g~lt~~i~~~f~~~v~~cILDGEMm~w 319 (881)
T KOG0966|consen 242 AIIEKMGGQDFYLETKFDGERIQLHKDGGEYKYFSRNGNDY--TYEYGASYAHGTLTQRIHGAFNKEVESCILDGEMMTW 319 (881)
T ss_pred HHHHHhcCCceEEEeeccCceEEEEecCCEEEEEecCCcch--hhhcCcccccccccHHHHhhhhhcchheEecceEEEe
Confidence 56667888899999999999999999999998999998633 2112 111000 11111113568999999884
Q ss_pred cCC-------C-----------CCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccC
Q 006606 391 KLP-------D-----------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRY 452 (639)
Q Consensus 391 ~~~-------~-----------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~ 452 (639)
... | .....+.|++||+|++||+++...|+.+|+.+|++.+. |..+.+
T Consensus 320 D~~~~~f~~~G~~~dik~~~~~~~~~qp~yvvfDLLylNgksL~~~~l~qR~e~L~~v~~-p~~~~i------------- 385 (881)
T KOG0966|consen 320 DTKTKRFCPFGSNSDIKELSSRDGSQQPCYVVFDLLYLNGKSLFGAPLHQRLEILKKVIV-PKSGRI------------- 385 (881)
T ss_pred ecchhhhccCCchhhHHHhhccccCCCceEEEeeeeeecCcccCCccHHHHHHHHHhccc-CCCCee-------------
Confidence 311 0 11256899999999999999999999999999998543 321111
Q ss_pred CCCCcEEEecceeechhHHHHHHHhcccccCCCceEEEEeCCCCCccCC-CCCeEEEecCCCc
Q 006606 453 DLEPFRVRRKDFWLLSTVNKLLKEFIPKLSHDADGLVFQGWDDPYVPRT-HEGLLKWKYARMN 514 (639)
Q Consensus 453 ~~~pf~I~~K~~~~~~~~~~l~~~~~~~l~h~~DGLIf~p~~spY~~G~-~~~llKWKp~~~n 514 (639)
+.++-+.......+++.|+. ++..+.||||.+..+|.|.+|. ...|+|-||....
T Consensus 386 ----ei~~~~~~~~~edi~~~f~~---ai~~~~EGIVlK~~~S~Y~pg~R~~gW~K~KPeYlk 441 (881)
T KOG0966|consen 386 ----EIVRSEVGSTKEDIEQFFEE---AIDNGEEGIVLKKPDSSYVPGQRSNGWIKLKPEYLK 441 (881)
T ss_pred ----EEeehhhcccHHHHHHHHHH---HHhcCCCceEEeccCcccCccccCCCcEeecHHHHh
Confidence 12333444555566666664 6788999999999999999995 7899999998765
No 50
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.48 E-value=3e-13 Score=132.21 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=77.7
Q ss_pred CCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh-cCCCH
Q 006606 153 YYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS-QSMSV 231 (639)
Q Consensus 153 ~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~-~g~s~ 231 (639)
.+.....+..|+.++.+|+.|+ .+|+..++.++ .+||+.....|+.|+|||.+|+|||||++|||||.+ +++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~D~-~~p~~~~l~~~----v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~ 136 (180)
T COG2453 62 LYNVAIEENDGIQVLHLPILDG-TVPDLEDLDKI----VDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLA 136 (180)
T ss_pred ceecceeccCCceeeeeeecCC-CCCcHHHHHHH----HHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCH
Confidence 3444556678999999999996 78887655554 566666666788999999999999999999999999 45688
Q ss_pred HHHHHHHHhcCCCccCCHHHHHHHHHH
Q 006606 232 AQAIKKFAEVRPPGIYKNEYIEALYTF 258 (639)
Q Consensus 232 ~eAi~~~~~~Rp~~i~~~~~l~~L~~~ 258 (639)
++|+...+.+|+..+....|...+.+.
T Consensus 137 ~~~i~~~~~~r~~~v~~~~q~~~~~e~ 163 (180)
T COG2453 137 DEAIAVKRRRRPGAVVTEIQHLFELEQ 163 (180)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 888998998888655544444444333
No 51
>KOG0967 consensus ATP-dependent DNA ligase I [Replication, recombination and repair]
Probab=99.29 E-value=1.5e-11 Score=134.99 Aligned_cols=176 Identities=18% Similarity=0.285 Sum_probs=123.6
Q ss_pred hhhhhcccceeeeecCceeEEEEEEECC-EEEEEeCCCccccccCcCCCcCCc-ccccccCCCCeEeeEEEEEecCCCCC
Q 006606 319 NLQLLRQRYYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFPCRNSN-EGLGEKTHHFTLLDGEMIIDKLPDSR 396 (639)
Q Consensus 319 ~l~~l~~~~Y~V~eK~DG~R~ll~i~~~-~vyLidR~~~~~~v~~~FP~~~~~-~~~~~~~~~~tlLDGElV~d~~~~~~ 396 (639)
-|..+.+..|-.++|.||.|..++...+ .+++++||.+ ..+-+||..... ..+........|||||+|.....+.+
T Consensus 358 vl~rf~~~~FTCEyKYDGeRAQIH~~edG~v~IfSRN~E--~~T~kYPDi~~~~~~~~kp~v~sFIlD~EvVA~Dr~~~~ 435 (714)
T KOG0967|consen 358 VLERFQDKAFTCEYKYDGERAQIHKLEDGTVEIFSRNSE--NNTGKYPDIIEVISKLKKPSVKSFILDCEVVAWDREKGK 435 (714)
T ss_pred HHHHhhCceeEEEeecCceeeeeEEccCCcEEEEecccc--cccccCccHHHHHHHhhCCccceeEEeeeEEEEeccCCc
Confidence 3456788899999999999999998754 5899999987 557899976432 11111223678999999985433211
Q ss_pred --------------------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006606 397 --------------------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 456 (639)
Q Consensus 397 --------------------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~p 456 (639)
+-....++||+|++||+++.++|+.+|..+|.+....- |-
T Consensus 436 IlpFQvLSTRkRk~v~v~dikV~Vcvf~FDily~ng~~Li~~pL~eRR~~l~e~f~e~-------------~g------- 495 (714)
T KOG0967|consen 436 ILPFQVLSTRKRKNVDVNDIKVKVCVFVFDILYLNGESLIQEPLRERRELLHESFKEI-------------PG------- 495 (714)
T ss_pred cCchhhhhhhhccccchhhceEEEEEEEEeeeeeCChhhhhhhHHHHHHHHHhhcccC-------------CC-------
Confidence 12467889999999999999999999999998854221 00
Q ss_pred cEEEecceeech---hHHHHHHHhcccccCCCceEEEEeC--CCCCccC-CCCCeEEEecCC----CceEEEEE
Q 006606 457 FRVRRKDFWLLS---TVNKLLKEFIPKLSHDADGLVFQGW--DDPYVPR-THEGLLKWKYAR----MNSVDFLF 520 (639)
Q Consensus 457 f~I~~K~~~~~~---~~~~l~~~~~~~l~h~~DGLIf~p~--~spY~~G-~~~~llKWKp~~----~nTvDF~l 520 (639)
..........+ .++..|+ ....+.++|||.+-. ++-|.|- ++.+|||-|-.. .-|+|+.+
T Consensus 496 -~f~fat~~~tn~~~eiq~Fl~---~sv~~~cEGlMvKtLd~~atYep~kRs~~WlKlKkDYldgvgdslDLv~ 565 (714)
T KOG0967|consen 496 -EFQFATSLDTNDIDEIQEFLE---ESVQNSCEGLMVKTLDTNATYEPSKRSNNWLKLKKDYLDGVGDSLDLVV 565 (714)
T ss_pred -ceeEeeeeccCCHHHHHHHHH---HhhccCcceeEEEeeccccccCchhhccchhhhhhhhhcccccceeeee
Confidence 02222233333 3444444 467899999999964 5678765 478999999655 35677765
No 52
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.23 E-value=3.1e-11 Score=114.33 Aligned_cols=101 Identities=24% Similarity=0.319 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCceEEEEcCCCC--CCCC----cchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 006606 128 KQVIHQLRVLGRKLGLVIDLTNTT--RYYP----TSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSK 201 (639)
Q Consensus 128 ~~l~~~~~~~~~~I~~VIdLt~~~--~~y~----~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~ 201 (639)
..=++.++.. ++..|+.|.... ..|. .+..+..||.++++|++|. .+|+.+...+++..+...+ .+|
T Consensus 61 ~~DL~~Lk~~--G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~-~aPd~~~~~~i~~eL~~~L----~~g 133 (168)
T PF05706_consen 61 QADLERLKDW--GAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG-SAPDFAAAWQILEELAARL----ENG 133 (168)
T ss_dssp HHHHHHHHHT--T--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT-S---HHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHC--CCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC-CCCCHHHHHHHHHHHHHHH----HcC
Confidence 3344556654 588888887432 2232 2456789999999999995 7898776666665554444 479
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHhc-CCCHHHHH
Q 006606 202 KYILVHCTHGHNRTGYMIVHFLMRSQ-SMSVAQAI 235 (639)
Q Consensus 202 ~~VlVHC~~G~~RTG~li~aYLm~~~-g~s~~eAi 235 (639)
+.|+|||..|+||||+++||+|++.. ++++++||
T Consensus 134 ~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 134 RKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp --EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999999999999854 37999997
No 53
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.17 E-value=9e-11 Score=112.89 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=59.9
Q ss_pred HHHHHcCCCceEEEEcCCCCCCCCc-chhhcCCcEEEEeeccCCCC---CCCHHHHHHHHHHHHHHHHhcccCCCeEEEE
Q 006606 132 HQLRVLGRKLGLVIDLTNTTRYYPT-SDLKKEGIKHVKIQCKGRDA---VPDNASVNNFVYEVTQFLSRQKHSKKYILVH 207 (639)
Q Consensus 132 ~~~~~~~~~I~~VIdLt~~~~~y~~-~~~~~~gI~y~~ip~~d~~~---~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVH 207 (639)
..++. .++++||+|+.+....+. .-+++.||+++++++.+... .++.+.+.+.++ .+. .....+|+||
T Consensus 26 ~fL~~--L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~----~il--d~~n~PvLiH 97 (164)
T PF03162_consen 26 PFLER--LGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE----IIL--DPRNYPVLIH 97 (164)
T ss_dssp HHHHH--HT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH----HHH---GGG-SEEEE
T ss_pred HHHHH--CCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH----HHh--CCCCCCEEEE
Confidence 34443 479999999976543332 23478999999999976421 234455555443 333 2346799999
Q ss_pred cCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhc
Q 006606 208 CTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEV 241 (639)
Q Consensus 208 C~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~ 241 (639)
|.+|..|||++|+||- +.+||+..+|++.++.-
T Consensus 98 C~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f 130 (164)
T PF03162_consen 98 CNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRF 130 (164)
T ss_dssp -SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHH
T ss_pred eCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 9999999999999999 67899999999999864
No 54
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=99.07 E-value=1.3e-09 Score=116.44 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=97.5
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCccc-cccCcCCCcCCcccccccCCCCeEeeEEEEEecCCC---C-CC-ce
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFNFR-RVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPD---S-RR-QE 399 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~-~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~---~-~~-~~ 399 (639)
..|+|+||.||.|+-++..++++.+++|++.+. .++-.+|..... .+. ..+.+.+||||+|.-..+. . .. .+
T Consensus 48 ~~~~vEEKlDG~nvri~~~~G~v~a~TR~G~i~e~~T~~~~eiv~~-~~~-~~~p~~iLdGElvg~~~p~v~~~~~~~~~ 125 (342)
T cd07894 48 GPVAVEEKMNGYNVRIVRIGGKVLAFTRGGFICPFTTDRLRDLIDP-EFF-DDHPDLVLCGEVVGPENPYVPGSYPEVED 125 (342)
T ss_pred CCEEEEEeECCcEEEEEEECCEEEEEeCCCccCccchhhHhhhchH-Hhh-ccCCCEEEEEEEEecCCccccccCccccc
Confidence 589999999999999888888899999997633 234455544211 111 1246799999998754221 1 11 35
Q ss_pred eEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcc
Q 006606 400 RRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIP 479 (639)
Q Consensus 400 ~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~~~ 479 (639)
..|++||++..++ ...+|+.+|.++|++... |.. +. ...+...+ ...+..+++.
T Consensus 126 v~F~vFDI~~~~~--~~~lp~~eR~~lLe~lg~-~~v-----------~~------~~~~~~~d---~~~l~~~l~~--- 179 (342)
T cd07894 126 VGFFVFDIRKKNT--GRPLPVEERRELLEKYGL-PTV-----------RL------FGEFTADE---IEELKEIIRE--- 179 (342)
T ss_pred cEEEEEeeEEcCC--CCCCCHHHHHHHHHhcCC-CCc-----------ce------EEEEecCC---HHHHHHHHHH---
Confidence 7999999999875 667999999999988532 111 00 00112222 3344555554
Q ss_pred cccCCCceEEEEeCCC-----CCccC
Q 006606 480 KLSHDADGLVFQGWDD-----PYVPR 500 (639)
Q Consensus 480 ~l~h~~DGLIf~p~~s-----pY~~G 500 (639)
...++.||||+|..++ .|+..
T Consensus 180 ~~~~G~EGVVlK~~~~~~~~~Ky~t~ 205 (342)
T cd07894 180 LDKEGREGVVLKDPDMRVPPLKYTTS 205 (342)
T ss_pred HHHCCCceEEEeccccccCcceeecC
Confidence 4678999999999888 56544
No 55
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.07 E-value=1.6e-09 Score=94.99 Aligned_cols=91 Identities=24% Similarity=0.355 Sum_probs=71.4
Q ss_pred EEEeeccCCCCCCCH-HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhc------CCCHHHHHHHH
Q 006606 166 HVKIQCKGRDAVPDN-ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQ------SMSVAQAIKKF 238 (639)
Q Consensus 166 y~~ip~~d~~~~P~~-~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~------g~s~~eAi~~~ 238 (639)
|....++|. .+|+. +.+.+|+..+.+.... ...+++|+|||.+|.||||+++++|++... -.++.+++..+
T Consensus 5 ~~~~~Wpd~-~~P~~~~~~~~~~~~v~~~~~~-~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00012 5 YHYTGWPDH-GVPESPDSILEFLRAVKKNLNQ-SSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EeeCCCCCC-CCCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 344455665 46654 7888888888776653 223679999999999999999999999764 25889999999
Q ss_pred HhcCCCccCCHHHHHHHHHH
Q 006606 239 AEVRPPGIYKNEYIEALYTF 258 (639)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L~~~ 258 (639)
++.|+..+.+..+...++..
T Consensus 83 r~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 83 RKQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred HhhhhhhCCcHHHHHHHHHH
Confidence 99999999998887776653
No 56
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.07 E-value=1.6e-09 Score=94.99 Aligned_cols=91 Identities=24% Similarity=0.355 Sum_probs=71.4
Q ss_pred EEEeeccCCCCCCCH-HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhc------CCCHHHHHHHH
Q 006606 166 HVKIQCKGRDAVPDN-ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQ------SMSVAQAIKKF 238 (639)
Q Consensus 166 y~~ip~~d~~~~P~~-~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~------g~s~~eAi~~~ 238 (639)
|....++|. .+|+. +.+.+|+..+.+.... ...+++|+|||.+|.||||+++++|++... -.++.+++..+
T Consensus 5 ~~~~~Wpd~-~~P~~~~~~~~~~~~v~~~~~~-~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (105)
T smart00404 5 YHYTGWPDH-GVPESPDSILEFLRAVKKNLNQ-SSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKEL 82 (105)
T ss_pred EeeCCCCCC-CCCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 344455665 46654 7888888888776653 223679999999999999999999999764 25889999999
Q ss_pred HhcCCCccCCHHHHHHHHHH
Q 006606 239 AEVRPPGIYKNEYIEALYTF 258 (639)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L~~~ 258 (639)
++.|+..+.+..+...++..
T Consensus 83 r~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 83 RKQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred HhhhhhhCCcHHHHHHHHHH
Confidence 99999999998887776653
No 57
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=98.93 E-value=1.7e-08 Score=94.19 Aligned_cols=107 Identities=9% Similarity=0.106 Sum_probs=77.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCceEEEEcCCCCC-CCCcc------hhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHH
Q 006606 121 PGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTR-YYPTS------DLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQF 193 (639)
Q Consensus 121 ~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~-~y~~~------~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~f 193 (639)
...+.++.++.. +.. .+|++||||..... .-.+. .....|++|+++|+... .++.+.+..|...+
T Consensus 11 ~s~qlt~~d~~~-L~~--~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~~~--- 82 (135)
T TIGR01244 11 VSPQLTKADAAQ-AAQ--LGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRAAI--- 82 (135)
T ss_pred EcCCCCHHHHHH-HHH--CCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHHHH---
Confidence 334556777654 444 46999999986432 11221 22457999999999764 35777887775433
Q ss_pred HHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhc
Q 006606 194 LSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEV 241 (639)
Q Consensus 194 i~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~ 241 (639)
+ ...++|++||++|. |||.+.+.++.. .|++.+++++..++.
T Consensus 83 -~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~ 124 (135)
T TIGR01244 83 -G---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAA 124 (135)
T ss_pred -H---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHc
Confidence 3 23578999999999 999998887766 799999999988765
No 58
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.82 E-value=2.1e-08 Score=101.66 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=69.0
Q ss_pred cEEEEee-ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhc-----CCCHHHHHHH
Q 006606 164 IKHVKIQ-CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQ-----SMSVAQAIKK 237 (639)
Q Consensus 164 I~y~~ip-~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~-----g~s~~eAi~~ 237 (639)
|.++++. .+|++.++..+.+..|+..+...... ..+++|+|||.+|.||||+++|++++... .+++.+|+..
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~--~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQ--PGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhcc--CCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4455443 45653333446777777766554321 34679999999999999999999986543 5899999999
Q ss_pred HHhcCCCccCCHHHHHHHHH
Q 006606 238 FAEVRPPGIYKNEYIEALYT 257 (639)
Q Consensus 238 ~~~~Rp~~i~~~~~l~~L~~ 257 (639)
+|+.|+.++.+..|...++.
T Consensus 208 iR~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 208 LRSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HHhccccccCCHHHHHHHHH
Confidence 99999999999888877764
No 59
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.71 E-value=7.4e-08 Score=105.40 Aligned_cols=99 Identities=15% Similarity=0.260 Sum_probs=74.4
Q ss_pred cEEEEee-ccCCCCCCCHHHHHHHHHHHHHHHHhcc-----cCCCeEEEEcCCCCChhHHHHHHHHHHhcC-CCHHHHHH
Q 006606 164 IKHVKIQ-CKGRDAVPDNASVNNFVYEVTQFLSRQK-----HSKKYILVHCTHGHNRTGYMIVHFLMRSQS-MSVAQAIK 236 (639)
Q Consensus 164 I~y~~ip-~~d~~~~P~~~~i~~f~~~v~~fi~~~~-----~~~~~VlVHC~~G~~RTG~li~aYLm~~~g-~s~~eAi~ 236 (639)
|.++++. .+||+.+|+.+.+..|++.+........ .+...++|||.+|+||||++||+|+|...+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 4455543 5888666666678888777755432110 011234799999999999999999998666 48999999
Q ss_pred HHHhcCCC-ccCCHHHHHHHHHHHhhc
Q 006606 237 KFAEVRPP-GIYKNEYIEALYTFYHEK 262 (639)
Q Consensus 237 ~~~~~Rp~-~i~~~~~l~~L~~~y~~~ 262 (639)
.+|..|++ .+.+..|...|++.-..+
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHH
Confidence 99999998 999999999998866544
No 60
>PLN02727 NAD kinase
Probab=98.69 E-value=9.9e-08 Score=110.54 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHcCCCceEEEEcCCCCC---CC---CcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006606 122 GKRYSFKQVIHQLRVLGRKLGLVIDLTNTTR---YY---PTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLS 195 (639)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~---~y---~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~ 195 (639)
..+-+++++-. +.+ .++++||||+.+.. .| ..+..+..|++|+++|+.+. ..|+.++|.+|.+.+.+
T Consensus 266 sgQpspe~la~-LA~--~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~--- 338 (986)
T PLN02727 266 GGQVTEEGLKW-LLE--KGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSD--- 338 (986)
T ss_pred eCCCCHHHHHH-HHH--CCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHh---
Confidence 44567888855 333 47999999986543 22 12334568999999999774 68899999998755422
Q ss_pred hcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 196 RQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 196 ~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
...++||+||++|..|||+|+||||...-+-.
T Consensus 339 ---slpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 339 ---SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred ---hcCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 24689999999999999999999999866644
No 61
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.66 E-value=1.1e-07 Score=98.04 Aligned_cols=83 Identities=27% Similarity=0.385 Sum_probs=65.3
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHhcCCC
Q 006606 171 CKGRDAVP-DNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS-----QSMSVAQAIKKFAEVRPP 244 (639)
Q Consensus 171 ~~d~~~~P-~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~-----~g~s~~eAi~~~~~~Rp~ 244 (639)
.+|+ .+| +.+.+.+|+..+..... ..+++|+|||.+|.||||+++|++++.. ...++.+|+..+|+.|++
T Consensus 166 W~d~-~~P~~~~~~~~~i~~v~~~~~---~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 166 WPDH-GVPESPKSILDLVRAVRKSQS---TSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHhhc---cCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 3565 455 55667777766654432 2268999999999999999999988742 357999999999999999
Q ss_pred ccCCHHHHHHHHH
Q 006606 245 GIYKNEYIEALYT 257 (639)
Q Consensus 245 ~i~~~~~l~~L~~ 257 (639)
++.+..|...++.
T Consensus 242 ~v~~~~Qy~f~~~ 254 (258)
T smart00194 242 MVQTEEQYIFLYR 254 (258)
T ss_pred ccCCHHHHHHHHH
Confidence 9999998888765
No 62
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.33 E-value=8.6e-07 Score=84.12 Aligned_cols=66 Identities=18% Similarity=0.384 Sum_probs=47.0
Q ss_pred CCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHH
Q 006606 154 YPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMR 225 (639)
Q Consensus 154 y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~ 225 (639)
|.....+..|+.|+++|+.|+ ..|+.+.+..|+..+ .+. .++..+.+||.+|.|||.+..+.|.|-
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v----~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDH-QAPDPEDIDAFINFV----KSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHHH----HTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHH----HhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344556678999999999997 899999999997544 433 457899999999999999999888874
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.32 E-value=2.1e-06 Score=77.10 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHcCCCceEEEEcCCCCCCC---C----cchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006606 124 RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYY---P----TSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSR 196 (639)
Q Consensus 124 ~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y---~----~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~ 196 (639)
+-+++++-+ +.+ .++++|||+..+..-. . .+..+..|+.|+++|+.+ ..++.+.+..|.+.+ +
T Consensus 14 Q~~~~d~~~-la~--~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~--~~~~~~~v~~f~~~l----~- 83 (110)
T PF04273_consen 14 QPSPEDLAQ-LAA--QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG--GAITEEDVEAFADAL----E- 83 (110)
T ss_dssp S--HHHHHH-HHH--CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T--TT--HHHHHHHHHHH----H-
T ss_pred CCCHHHHHH-HHH--CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC--CCCCHHHHHHHHHHH----H-
Confidence 345667654 443 5699999998543211 1 134678999999999986 357789999886544 3
Q ss_pred cccCCCeEEEEcCCCCChhHHHHHH
Q 006606 197 QKHSKKYILVHCTHGHNRTGYMIVH 221 (639)
Q Consensus 197 ~~~~~~~VlVHC~~G~~RTG~li~a 221 (639)
...++|++||..|. |++.|-+.
T Consensus 84 --~~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 84 --SLPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp --TTTTSEEEE-SCSH-HHHHHHHH
T ss_pred --hCCCCEEEECCCCh-hHHHHHHH
Confidence 23569999999995 99877554
No 64
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.30 E-value=4.8e-06 Score=87.84 Aligned_cols=87 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHh-----cccCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHHHHh
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSR-----QKHSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKKFAE 240 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~-----~~~~~~~VlVHC~~G~~RTG~li~aYLm~-----~~g~s~~eAi~~~~~ 240 (639)
.+|+|.+.+...+..|+..|.+.... .....++|+|||.+|+||||+++|...+- ....++.+++..+|+
T Consensus 186 WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~ 265 (298)
T PHA02740 186 WPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQ 265 (298)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHh
Confidence 46765555677888888777654321 11234699999999999999998876543 334599999999999
Q ss_pred cCCCccCCHHHHHHHHH
Q 006606 241 VRPPGIYKNEYIEALYT 257 (639)
Q Consensus 241 ~Rp~~i~~~~~l~~L~~ 257 (639)
.|+..+....|...+++
T Consensus 266 qR~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 266 KKYGCMNCLDDYVFCYH 282 (298)
T ss_pred hCccccCCHHHHHHHHH
Confidence 99999999887776554
No 65
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.24 E-value=2.7e-06 Score=81.85 Aligned_cols=95 Identities=21% Similarity=0.328 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCCCCC-CcchhhcCCcEEEEeeccCCCCCCCHHHH----------HHH---------------HHHHHH
Q 006606 139 RKLGLVIDLTNTTRYY-PTSDLKKEGIKHVKIQCKGRDAVPDNASV----------NNF---------------VYEVTQ 192 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y-~~~~~~~~gI~y~~ip~~d~~~~P~~~~i----------~~f---------------~~~v~~ 192 (639)
.+|++||||......- .|..+ ..|++|+++|+.+. .......+ ..+ +..+..
T Consensus 41 lgI~tIiDLRs~~E~~~~p~~~-~~g~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~ 118 (164)
T PF13350_consen 41 LGIRTIIDLRSPTERERAPDPL-IDGVQYVHIPIFGD-DASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFE 118 (164)
T ss_dssp TT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S--TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred CCCCEEEECCCccccccCCCCC-cCCceeeeeccccc-ccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 5799999998643211 12222 24999999999764 22211111 111 122333
Q ss_pred HHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHH
Q 006606 193 FLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFA 239 (639)
Q Consensus 193 fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~ 239 (639)
.|. .+.++|++||++|..|||.++|..| .-.|.+.++.++-+.
T Consensus 119 ~l~---~~~~p~l~HC~aGKDRTG~~~alll-~~lGV~~~~I~~DY~ 161 (164)
T PF13350_consen 119 LLA---DAPGPVLFHCTAGKDRTGVVAALLL-SLLGVPDEDIIADYL 161 (164)
T ss_dssp HHH----TT--EEEE-SSSSSHHHHHHHHHH-HHTT--HHHHHHHHH
T ss_pred Hhc---cCCCcEEEECCCCCccHHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 333 2336999999999999997777655 558999988876553
No 66
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.21 E-value=8.6e-06 Score=81.95 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=63.5
Q ss_pred CCC-CHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHh-----cCCCHHHHHHHHHhcCCCccCCH
Q 006606 176 AVP-DNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRS-----QSMSVAQAIKKFAEVRPPGIYKN 249 (639)
Q Consensus 176 ~~P-~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~-----~g~s~~eAi~~~~~~Rp~~i~~~ 249 (639)
.+| +.+.+..|+..+...- ...+++|+|||.+|.||||+++++.++.. ...++.+++..+++.|++++.+.
T Consensus 147 ~~P~~~~~~~~~~~~v~~~~---~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~ 223 (235)
T PF00102_consen 147 GVPPSPESFLDFIRKVNKSK---DDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSP 223 (235)
T ss_dssp SSGSSSHHHHHHHHHHHHHH---STTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSH
T ss_pred ccccccchhhhhhhhccccc---cCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCH
Confidence 344 5566666666665543 34678999999999999999999998742 24699999999999999999999
Q ss_pred HHHHHHHHH
Q 006606 250 EYIEALYTF 258 (639)
Q Consensus 250 ~~l~~L~~~ 258 (639)
.|...++..
T Consensus 224 ~qy~f~~~~ 232 (235)
T PF00102_consen 224 EQYRFCYMA 232 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877653
No 67
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.21 E-value=8.8e-06 Score=86.18 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=62.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhc--------ccCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHH
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQ--------KHSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKK 237 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~--------~~~~~~VlVHC~~G~~RTG~li~aYLm~-----~~g~s~~eAi~~ 237 (639)
.+|++.+.+...+.+|+..+...-... ....++|+|||.+|+||||+++|...+- ....++-+++..
T Consensus 191 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~ 270 (303)
T PHA02742 191 WPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRD 270 (303)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 467654445667777777665421110 1124699999999999999998876653 223589999999
Q ss_pred HHhcCCCccCCHHHHHHHHH
Q 006606 238 FAEVRPPGIYKNEYIEALYT 257 (639)
Q Consensus 238 ~~~~Rp~~i~~~~~l~~L~~ 257 (639)
+|+.|+..+.+..|...++.
T Consensus 271 lR~qR~~~Vqt~~QY~F~y~ 290 (303)
T PHA02742 271 LRKQRHNCLSLPQQYIFCYF 290 (303)
T ss_pred HHhhcccccCCHHHHHHHHH
Confidence 99999999999887776554
No 68
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.20 E-value=9.5e-06 Score=86.28 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=61.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcc-------cCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHHH
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQK-------HSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKKF 238 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~-------~~~~~VlVHC~~G~~RTG~li~aYLm~-----~~g~s~~eAi~~~ 238 (639)
.+|++.+.+...+..|+..+...-+... ...++|+|||.+|+||||+++|...+. ....++.+++..+
T Consensus 192 Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~l 271 (312)
T PHA02747 192 WFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKI 271 (312)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4665333345667777766654322111 113699999999999999999887532 2346899999999
Q ss_pred HhcCCCccCCHHHHHHH
Q 006606 239 AEVRPPGIYKNEYIEAL 255 (639)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L 255 (639)
|+.|+..+.+..|...+
T Consensus 272 R~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 272 REQRHAGIMNFDDYLFI 288 (312)
T ss_pred HhccccccCCHHHHHHH
Confidence 99999999998877776
No 69
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.16 E-value=1.1e-05 Score=86.18 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=64.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhc----cc---CCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHHHHH
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQ----KH---SKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAIKKF 238 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~----~~---~~~~VlVHC~~G~~RTG~li~aYLm~-----~~g~s~~eAi~~~ 238 (639)
.+|++.+.+...+.+|+..+....... .. ..++|+|||.+|+||||+++|...+. ....++.+++..+
T Consensus 210 Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~l 289 (323)
T PHA02746 210 WPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKI 289 (323)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 366643334667778887776543221 11 13699999999999999999865432 2346999999999
Q ss_pred HhcCCCccCCHHHHHHHHHH
Q 006606 239 AEVRPPGIYKNEYIEALYTF 258 (639)
Q Consensus 239 ~~~Rp~~i~~~~~l~~L~~~ 258 (639)
|+.|+..+.+..|...+++.
T Consensus 290 R~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 290 RKQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred HhcccccCCCHHHHHHHHHH
Confidence 99999999999888777654
No 70
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.01 E-value=5.7e-05 Score=75.32 Aligned_cols=134 Identities=19% Similarity=0.343 Sum_probs=90.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCC---cchhhcCCcEEEEeeccCCC---CCCCHHHHHHH
Q 006606 113 EFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYP---TSDLKKEGIKHVKIQCKGRD---AVPDNASVNNF 186 (639)
Q Consensus 113 ~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~---~~~~~~~gI~y~~ip~~d~~---~~P~~~~i~~f 186 (639)
..|....|..--|+.-.. .+++.||.|+.+. |. -.-++..||+++++-|.+.. .-|.......-
T Consensus 66 ~lyRSg~P~~~NfsFL~~--------L~LksIisL~pE~--yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~ 135 (249)
T KOG1572|consen 66 GLYRSGFPRPENFSFLKT--------LHLKSIISLCPEP--YPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHS 135 (249)
T ss_pred ceeecCCCCccchHHHHH--------hhhheEEEecCCC--CChHHHHHHHhcCceEEEEecccccccccCCCCCChHHH
Confidence 345555554444444222 2588999999764 53 24467899999999998753 14544445555
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhh
Q 006606 187 VYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261 (639)
Q Consensus 187 ~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~ 261 (639)
+..+.+++- ...+.++||||..|.-|||+||+|.- +.++|++.-.++.+...-+.. ...+..++.+.|..
T Consensus 136 i~~~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa~sk--~r~~d~~Fie~fd~ 205 (249)
T KOG1572|consen 136 IRKALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFAGSK--GRRVDLRFIEMFDT 205 (249)
T ss_pred HHHHHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhccch--hHHHHHHHHHHhcc
Confidence 555666654 45678999999999999999999977 778999988888777654433 33444444455554
No 71
>KOG3132 consensus m3G-cap-specific nuclear import receptor (Snurportin1) [RNA processing and modification]
Probab=97.98 E-value=0.00012 Score=72.61 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=106.5
Q ss_pred cceeeeecCceeEEEEEEECCEEEEEeCCCc-cccccCcCCCcCCccccc-ccCCCCeEeeEEEEEecCCCCCCceeEEE
Q 006606 326 RYYYATWKADGTRYMMLITIDGCYLIDRCFN-FRRVQMRFPCRNSNEGLG-EKTHHFTLLDGEMIIDKLPDSRRQERRYL 403 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~-~~~v~~~FP~~~~~~~~~-~~~~~~tlLDGElV~d~~~~~~~~~~~yl 403 (639)
.+|+|---.-|.|+|++...+.+....++|. +. +||......+.. ......||||..-- .. .-+|+
T Consensus 116 qdW~vv~~PvGKR~lvVaSrG~Tvay~k~G~~v~----rF~S~LPGGnrr~~~a~~ytILDCIy~--es------nQTYY 183 (325)
T KOG3132|consen 116 QDWYVVARPVGKRCLVVASRGTTVAYVKNGSTVH----RFPSALPGGNRRKGPANSYTILDCIYH--ES------NQTYY 183 (325)
T ss_pred cceEEEEeecCceEEEEecCCceEEEecCCeeEe----eccccCCCCCcCCCCcccceeeeeeec--cc------CceEE
Confidence 4899989999999999988887888888886 33 455432111111 11245699997542 11 23699
Q ss_pred EeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHHHHHHhcccccC
Q 006606 404 IYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEFIPKLSH 483 (639)
Q Consensus 404 iFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~~~~l~h 483 (639)
+.|+++++|.++-+.+..=|.-.|+.-+.+... +- ... ...+|.....++++.+. +.|-+.+.-.++.
T Consensus 184 VlD~~cWrgh~~yec~~dFRffwl~SKL~E~~~-----l~-~~t-----~~~~f~Fs~vp~~pC~q-~~l~~~~~~~~pf 251 (325)
T KOG3132|consen 184 VLDMVCWRGHSLYECTSDFRFFWLQSKLAETGA-----LD-PPT-----VYHKFRFSVVPFYPCDQ-SGLHSAYTGSLPF 251 (325)
T ss_pred EEEEEeecCcccccCchHHHHHHHhhhcccccc-----CC-CCC-----cCccceecccCCCCCCH-HHHHHHHcCCCce
Confidence 999999999999999999999999876533211 10 111 12466677778888754 2333333346788
Q ss_pred CCceEEEEeCCCCCccCCCC
Q 006606 484 DADGLVFQGWDDPYVPRTHE 503 (639)
Q Consensus 484 ~~DGLIf~p~~spY~~G~~~ 503 (639)
..|||.|-....-|.||.+.
T Consensus 252 ~~DGLLFYhks~~yqpgqsp 271 (325)
T KOG3132|consen 252 VRDGLLFYHKSVVYQPGQSP 271 (325)
T ss_pred eeeeEEEeecceeeCCCCCc
Confidence 99999999999999999873
No 72
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.98 E-value=6.7e-06 Score=87.70 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=68.1
Q ss_pred EEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHH----HhcC----CCHHHHHH
Q 006606 165 KHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLM----RSQS----MSVAQAIK 236 (639)
Q Consensus 165 ~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm----~~~g----~s~~eAi~ 236 (639)
+|.-+-.+|||.+-++--+..|++.|..- ++....-++|.|||.||+||||++|+.=++ ...| +++..-|+
T Consensus 416 ~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIq 494 (600)
T KOG0790|consen 416 HYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQ 494 (600)
T ss_pred hhheeecccCCCcCCccHHHHHHHHhhhh-hccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHH
Confidence 45556678887666778888899888654 323334469999999999999998765443 3344 57899999
Q ss_pred HHHhcCCCccCCHHHHHHHH
Q 006606 237 KFAEVRPPGIYKNEYIEALY 256 (639)
Q Consensus 237 ~~~~~Rp~~i~~~~~l~~L~ 256 (639)
+|+..|.+....+.|.+.+|
T Consensus 495 mVRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 495 MVRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred HHHHHhcchhhhHHhHHHHH
Confidence 99999999888776666554
No 73
>PHA02738 hypothetical protein; Provisional
Probab=97.97 E-value=4.4e-05 Score=81.51 Aligned_cols=87 Identities=21% Similarity=0.228 Sum_probs=62.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhc----------ccCCCeEEEEcCCCCChhHHHHHHHHHH-----hcCCCHHHHH
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQ----------KHSKKYILVHCTHGHNRTGYMIVHFLMR-----SQSMSVAQAI 235 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~----------~~~~~~VlVHC~~G~~RTG~li~aYLm~-----~~g~s~~eAi 235 (639)
.+|++.+.+...+.+|+..+.+..... ....++|+|||.+|+||||+++|.-.+- ....++.+++
T Consensus 187 Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V 266 (320)
T PHA02738 187 WPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIV 266 (320)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHH
Confidence 466644335567777777766532210 0114689999999999999988766432 2246899999
Q ss_pred HHHHhcCCCccCCHHHHHHHHH
Q 006606 236 KKFAEVRPPGIYKNEYIEALYT 257 (639)
Q Consensus 236 ~~~~~~Rp~~i~~~~~l~~L~~ 257 (639)
..+|+.|+..+....|...+++
T Consensus 267 ~~lR~qR~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 267 SSIRNQRYYSLFIPFQYFFCYR 288 (320)
T ss_pred HHHHhhhhhccCCHHHHHHHHH
Confidence 9999999999999888776654
No 74
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.84 E-value=4.6e-05 Score=78.44 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=36.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCcc
Q 006606 201 KKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGI 246 (639)
Q Consensus 201 ~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i 246 (639)
+++||+||+||..|||+++|+|+....++....|-++....++...
T Consensus 136 ~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~ 181 (249)
T COG2365 136 NGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEP 181 (249)
T ss_pred cCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccch
Confidence 5899999999999999999999999755555555566665555443
No 75
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.79 E-value=5.3e-05 Score=88.53 Aligned_cols=89 Identities=19% Similarity=0.345 Sum_probs=62.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHH----HHHHHhc-CCCHHHHHHHHHhcCCCc
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIV----HFLMRSQ-SMSVAQAIKKFAEVRPPG 245 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~----aYLm~~~-g~s~~eAi~~~~~~Rp~~ 245 (639)
.+|||.+-+......|++.+.. ++ ...+.+|+|||.||+||||++|+ .|||++. .+.+-+.+..+|..|-..
T Consensus 1036 WPDHg~P~D~~~FL~Fleevrs-vR--~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~m 1112 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRS-VR--RGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMM 1112 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHH-Hh--ccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhh
Confidence 5777543344555555554432 22 23367999999999999999986 4666643 368999999999999999
Q ss_pred cCCHHHHHHHH----HHHhhc
Q 006606 246 IYKNEYIEALY----TFYHEK 262 (639)
Q Consensus 246 i~~~~~l~~L~----~~y~~~ 262 (639)
+.+..|-...+ .+|+..
T Consensus 1113 VQT~~QYkFVyevil~~l~~~ 1133 (1144)
T KOG0792|consen 1113 VQTLSQYKFVYEVILRVLKRG 1133 (1144)
T ss_pred ccchHHhhHHHHHHHHHHHhc
Confidence 99988776544 455543
No 76
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.00039 Score=62.33 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=74.3
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCC-----C--CcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHH
Q 006606 118 CIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRY-----Y--PTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEV 190 (639)
Q Consensus 118 ~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~-----y--~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v 190 (639)
.+...-+-++.++.+.. ..++++|||..-+..- + ..+..+..|+.|.++|+.+. -++.++|..|.+.+
T Consensus 9 ~lsVsgQi~~~D~~~ia---a~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~Al 83 (130)
T COG3453 9 RLSVSGQISPADIASIA---ALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQRAL 83 (130)
T ss_pred ceeecCCCCHHHHHHHH---HhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHHHH
Confidence 33344456677876543 3579999999843321 1 12456789999999999874 56788999887655
Q ss_pred HHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHH
Q 006606 191 TQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMSVAQAIKKFA 239 (639)
Q Consensus 191 ~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s~~eAi~~~~ 239 (639)
.+ .+++||.||+.| .||-.+=..-. ...||+.+++.++=+
T Consensus 84 ~e-------aegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~ 123 (130)
T COG3453 84 DE-------AEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQ 123 (130)
T ss_pred HH-------hCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHH
Confidence 33 578999999999 57766544434 346899988876543
No 77
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.53 E-value=0.00013 Score=73.78 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=58.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCC-----------C---HHHHHH
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSM-----------S---VAQAIK 236 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~-----------s---~~eAi~ 236 (639)
..|. ..|+...+.+++.- +......+++++|||.||.||||++||.--+.+.-- + ..+.+.
T Consensus 193 W~D~-~~p~i~sl~~~~~s----l~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~ 267 (302)
T COG5599 193 WVDF-NVPDIRSLTEVIHS----LNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVL 267 (302)
T ss_pred cccc-CCcCHHHHHHHHHH----hhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHH
Confidence 3454 45654444444322 221112578999999999999999999877764421 1 334556
Q ss_pred HHHhcCCCccCCHHHHHHHHHHHhhcC
Q 006606 237 KFAEVRPPGIYKNEYIEALYTFYHEKR 263 (639)
Q Consensus 237 ~~~~~Rp~~i~~~~~l~~L~~~y~~~~ 263 (639)
.+|+.|-....+..|...|+....++.
T Consensus 268 ~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 268 SLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 677788888888888888887665543
No 78
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=97.40 E-value=0.0019 Score=69.45 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=101.6
Q ss_pred CCCCCccccccchhhhh-hhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccc-cCcCCCcCCcccccccCCCCeE
Q 006606 305 MQFPGSHPVSLNSDNLQ-LLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTL 382 (639)
Q Consensus 305 ~~FPGsqPVsl~r~~l~-~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v-~~~FP~~~~~~~~~~~~~~~tl 382 (639)
.+||-=.-+-.=..-+. .+.....+|+||.||..+-++..++.+++++|.+-+..- +-+++...+. .+. .-+.+.+
T Consensus 57 ~GyP~I~R~~~L~~gi~~~f~~~~v~vEEKlDG~Nvri~~~~g~l~a~tRGgyicp~tt~r~~~~~~~-~~~-~d~p~l~ 134 (374)
T TIGR01209 57 RGFPHIKRILLLRPGIKRHFKDPEVVVEEKMNGYNVRIVKYGGNVYALTRGGFICPFTTERLPDLIDL-EFF-DDNPDLV 134 (374)
T ss_pred cCCCCcceeeccchhhHHhcCCCcEEEEEeecCceEEEEeECCEEEEEccCcccCCCcHHHHHHHhhH-Hhh-ccCCCeE
Confidence 45775443322222332 344545999999999999887778899999999864310 1111211111 111 1247789
Q ss_pred eeEEEEEecCCCCC------CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006606 383 LDGEMIIDKLPDSR------RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 456 (639)
Q Consensus 383 LDGElV~d~~~~~~------~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~p 456 (639)
|-||++--..+-.. .....|++|||. +...-.-+|..+|.++++++-+.+
T Consensus 135 LcGE~iGpenpY~~hs~~y~~l~~~FfvFDI~--d~~t~~~L~~~er~~l~e~yglp~---------------------- 190 (374)
T TIGR01209 135 LCGEMAGPENPYTPEYYPEVKEDLGFFLFDIR--EGKTNRSLPVEERLELAEKYGLPH---------------------- 190 (374)
T ss_pred EEEEEcCCCCCCcccCccccCCCceEEEEEEE--ECCCCccCCHHHHHHHHHHCCCCc----------------------
Confidence 99999943322111 123479999997 445567789999999998743211
Q ss_pred cEEEecceeechhHHHHHHHhccccc-CCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEE
Q 006606 457 FRVRRKDFWLLSTVNKLLKEFIPKLS-HDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDF 518 (639)
Q Consensus 457 f~I~~K~~~~~~~~~~l~~~~~~~l~-h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF 518 (639)
|..-.-++...+..-+.+++..+. ++-||||+|+.+.- ...+|.--++.|--|.
T Consensus 191 --Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~------~~~~KYtT~~~n~~Di 245 (374)
T TIGR01209 191 --VEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMR------VKPLKYTTSYANINDI 245 (374)
T ss_pred --cceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCcccc------CCcceeecCccChHHH
Confidence 111111444443312223333344 68899999986431 2444554444444444
No 79
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.00071 Score=71.54 Aligned_cols=94 Identities=21% Similarity=0.178 Sum_probs=70.2
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhc-C----CCHHHHHHHHHhcC
Q 006606 168 KIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQ-S----MSVAQAIKKFAEVR 242 (639)
Q Consensus 168 ~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~-g----~s~~eAi~~~~~~R 242 (639)
....+|++.+-+...+.+|+..+.+.+. ...+++.|||.+|+|||||++|.--+-++ + .+.-..+-..|..|
T Consensus 257 y~~wPd~gvp~~~~sl~~f~~~~r~~~~---~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 257 YTAWPDFGVPSSTESLLQFVRMVRQSLD---TSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EeeccccCCCCCchhHHHHHHHHHhhcc---cCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 3456777433244667788877777665 34789999999999999999987654432 2 24667778889999
Q ss_pred CCccCCHHHHHHHHHHHhhcCC
Q 006606 243 PPGIYKNEYIEALYTFYHEKRL 264 (639)
Q Consensus 243 p~~i~~~~~l~~L~~~y~~~~~ 264 (639)
+....+..|...|++-..+...
T Consensus 334 ~~mVqte~Qyvfl~~c~~~~l~ 355 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQCVLESLQ 355 (374)
T ss_pred ccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999887776543
No 80
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.16 E-value=0.0053 Score=57.51 Aligned_cols=109 Identities=15% Similarity=0.241 Sum_probs=68.4
Q ss_pred CCceEEEEcCCCCCCC-Ccchhhc---CCcEEEEeeccCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCC
Q 006606 139 RKLGLVIDLTNTTRYY-PTSDLKK---EGIKHVKIQCKGRD-AVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHN 213 (639)
Q Consensus 139 ~~I~~VIdLt~~~~~y-~~~~~~~---~gI~y~~ip~~d~~-~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~ 213 (639)
++-..++.|.....++ .+..... ..+.+-.+..+|.+ ..|.++.+.. +.+|.++.. ....++|||.+|+|
T Consensus 31 h~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~----i~DF~~~wp-~~apllIHC~aGIS 105 (172)
T COG5350 31 HGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRA----IIDFADEWP-RFAPLLIHCYAGIS 105 (172)
T ss_pred cCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHH----HHHHHhcCc-cccceeeeeccccc
Confidence 4577788887643232 2322211 12222233333333 5677666655 456766543 35789999999999
Q ss_pred hhHHH--HHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHH
Q 006606 214 RTGYM--IVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIE 253 (639)
Q Consensus 214 RTG~l--i~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~ 253 (639)
||..+ +++.-+. ..+...++-+.++..+|..-||+.-+.
T Consensus 106 RStA~A~i~a~ala-~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 106 RSTAAALIAALALA-PDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred cchHHHHHHHHhhc-cccChHHHHHHHHhcCcccCCChhHHH
Confidence 98653 3333333 578999999999999999999987664
No 81
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.03 E-value=0.0023 Score=70.49 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHH-Hh--c--C-CCHHHHHHHHHhcCCCccCCHHHHHHHHH
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLM-RS--Q--S-MSVAQAIKKFAEVRPPGIYKNEYIEALYT 257 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm-~~--~--g-~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~ 257 (639)
..+++.|||.+|.||||++++.-.+ .. . + ....+.+..++..|+.++.+..|...++.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~ 361 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYA 361 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 4689999999999999999975522 11 2 1 35888999999999999988877765543
No 82
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.015 Score=61.24 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=91.3
Q ss_pred hcccceeeeecCceeEEEEEEECCEEEEEeCCCccccc-cCcCCCcCCcccccccCCCCeEeeEEEEEecCCCCC-----
Q 006606 323 LRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSR----- 396 (639)
Q Consensus 323 l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v-~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~----- 396 (639)
+.....+|.||.||.-+=++..++.+|.++|.|-+..- +-+-|..-+.+-+ ..+++++|=||||--..|=..
T Consensus 85 F~~~~v~VEEKmnGYNVRV~k~~g~vyAiTRgG~ICPfTT~r~~~l~~~eff--~d~p~lvlcgEmvG~enPYv~~~~y~ 162 (382)
T COG1423 85 FGRGKVVVEEKMNGYNVRVVKLGGEVYAITRGGLICPFTTERLRDLIDLEFF--DDYPDLVLCGEMVGPENPYVPGPYYE 162 (382)
T ss_pred cCCCcEEEEEeccCceEEEEEECCEEEEEecCceecCchhHHHHhhcchhhH--hhCCCcEEEEEeccCCCCCCCCCCCc
Confidence 33568999999999988888888999999999975311 1111111111111 225889999999975433211
Q ss_pred CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhH-HHHHH
Q 006606 397 RQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTV-NKLLK 475 (639)
Q Consensus 397 ~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~-~~l~~ 475 (639)
...+-|.+||+.-.+ .-..+|..+|+++++++-+. . |+.=--++++.+ +.+.
T Consensus 163 ~e~v~fFvFDire~~--tgr~Lp~eer~~l~ekYgl~-~-----------------------V~~fg~~~~~e~~eei~- 215 (382)
T COG1423 163 KEDVGFFVFDIREKN--TGRPLPVEERLELAEKYGLP-H-----------------------VEIFGEFPADEAGEEIY- 215 (382)
T ss_pred cCCceEEEEEEEecC--CCCCCCHHHHHHHHHHcCCC-c-----------------------eEEeeeechhHhHHHHH-
Confidence 234679999998754 33678999999999986431 1 222223444444 3322
Q ss_pred Hhccccc-CCCceEEEEeCCC
Q 006606 476 EFIPKLS-HDADGLVFQGWDD 495 (639)
Q Consensus 476 ~~~~~l~-h~~DGLIf~p~~s 495 (639)
.++..+. .+-+|+|+|..+.
T Consensus 216 eIve~L~keGREGVV~Kdpdm 236 (382)
T COG1423 216 EIVERLNKEGREGVVMKDPDM 236 (382)
T ss_pred HHHHHHhhcCCcceEecCccc
Confidence 2444444 5889999998664
No 83
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.39 E-value=0.009 Score=55.95 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=48.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCC----hhHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHN----RTGYMIVHFLMRSQSMSVAQAIKKFAEVRPP 244 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~----RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~ 244 (639)
..|+ .+.....+-+|+..+.+.+++... .+..+|||+..-. -+++||+||+|-.+|||+++|++-+...-|+
T Consensus 38 ~~DF-GPlnL~~lyrfc~~l~~~L~~~~~-~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~ 113 (141)
T PF14671_consen 38 YADF-GPLNLAQLYRFCCKLNKKLKSPEL-KKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPP 113 (141)
T ss_dssp SS-------HHHHHHHHHHHHHHHH-GGG-TTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT--
T ss_pred cCcC-CCccHHHHHHHHHHHHHHHcCHHh-cCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Confidence 3566 578889999999999999886443 4567788887554 3789999999999999999999999877543
No 84
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.01 E-value=0.1 Score=59.31 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=58.2
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHH-h--cC---CCHHHHHHHHHhc
Q 006606 168 KIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMR-S--QS---MSVAQAIKKFAEV 241 (639)
Q Consensus 168 ~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~-~--~g---~s~~eAi~~~~~~ 241 (639)
.+...+.+.+-+...+..|-..|++... ....+|+|||..|-||||+-|+.=++- + .| +++..-++.+|..
T Consensus 897 fLSWp~egvPasarslLdFRRKVNK~YR---GRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 897 FLSWPDEGVPASARSLLDFRRKVNKCYR---GRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eecccccCCccchHHHHHHHHHhhhhcc---CCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 3445554334445566667666665543 346899999999999999865543322 1 13 4677889999999
Q ss_pred CCCccCCHHHHHHHH
Q 006606 242 RPPGIYKNEYIEALY 256 (639)
Q Consensus 242 Rp~~i~~~~~l~~L~ 256 (639)
|++..-...|.+..+
T Consensus 974 R~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFAL 988 (1004)
T ss_pred CCcceeehhhhHHHH
Confidence 999888776666443
No 85
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A ....
Probab=94.41 E-value=0.41 Score=51.11 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=83.3
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCcCCCcCC-cccccccCCCCeEeeEEEEEecC----------
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKL---------- 392 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~~~~~~~~~tlLDGElV~d~~---------- 392 (639)
.|+|++|.||.-+-|...++. +..++|.+-.. .|+........ +..+... .....+=||+++...
T Consensus 108 ~~~~e~KiDGlsi~L~Y~~G~L~~a~TRGdG~~GeDvT~n~~~i~~iP~~i~~~-p~~~eVRGEv~m~~~~F~~ln~~~~ 186 (315)
T PF01653_consen 108 EFVVEPKIDGLSISLIYENGKLVRAATRGDGEVGEDVTHNVRTIKSIPLRIPEK-PGRLEVRGEVYMSKSDFEKLNEERE 186 (315)
T ss_dssp EEEEEEEESSEEEEEEEETTEEEEEEEETTSSEEEB-HHHHCTSTTS-SB-SSS-SSEEEEEEEEE--HHHHHHHHHHHH
T ss_pred ceeEeeccceeEEEEEEeCCEEEEEEEcCCCccchhHHHHHHHHhcCchhhccC-CcceEEEEEEEEehhhHHHHHHHHH
Confidence 499999999999988777665 57899964321 12211100000 0111000 245788899997531
Q ss_pred --CCC---------------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCC
Q 006606 393 --PDS---------------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 449 (639)
Q Consensus 393 --~~~---------------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~ 449 (639)
+.. ....+.|++|++...+| +..-....++++.|.++-+.. ++.
T Consensus 187 ~~~~~~faNpRN~aAGsLr~~d~~~~~~r~L~f~~y~~~~~~~-~~~~~t~~e~l~~L~~~GF~v------------~~~ 253 (315)
T PF01653_consen 187 EEGEKPFANPRNAAAGSLRQKDPSITAERKLSFFAYGIGEPEG-DLGFNTQSERLQFLKEWGFPV------------NPY 253 (315)
T ss_dssp HTTS---SSHHHHHHHHHTSSSHHHHHTS--EEEEEEEEEETT-STT-SBHHHHHHHHHHTT--B-------------TT
T ss_pred HhccchhhhhhHHHHHhhhhccchhhhcCeeEEEEEEeccccc-ccChHHHHHHHHHHHHcCCCC------------Ccc
Confidence 000 02468999999999888 334445788888888743221 011
Q ss_pred ccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCCcc--C----CCCCeEEEecC
Q 006606 450 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYVP--R----THEGLLKWKYA 511 (639)
Q Consensus 450 ~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~spY~~--G----~~~~llKWKp~ 511 (639)
+.. +-.+..+....+.+ ...+.+..||||++-.+..+.- | ....-+=||+|
T Consensus 254 ---------~~~--~~~~~~v~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~LG~t~~~PrwAiAyKfp 313 (315)
T PF01653_consen 254 ---------IRF--CKSIEEVEEYIEEWEERREELPYPIDGIVIKVNDLALQERLGYTSKHPRWAIAYKFP 313 (315)
T ss_dssp ---------EEE--ESSHHHHHHHHHHHHHHGCCSSS-EEEEEEEESBHHHHHHH-BESSSBSSEEEEE--
T ss_pred ---------eEe--cCCHHHHHHHHHHHHhhhhccccccCcEEEEecCHHHHHhcCCcCCCCCeEEEECcC
Confidence 111 11223333333333 2478899999999986544332 3 22344555554
No 86
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.36 E-value=0.061 Score=64.39 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=53.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHH-----HHhcCCCHHHHHHHHHhcCCCc
Q 006606 171 CKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFL-----MRSQSMSVAQAIKKFAEVRPPG 245 (639)
Q Consensus 171 ~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYL-----m~~~g~s~~eAi~~~~~~Rp~~ 245 (639)
.+|++.+-....+.+|+..+..|- .-..++|+|||.||.||||+.|+.=- ......+.-+-+..+|..|...
T Consensus 703 Wpd~gvPe~~t~lL~f~rrvk~~~---p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPETPTGLLKFRRRVKTFN---PPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCcccchHHHHHHHHhccCC---CcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 566643333355666666654431 11348999999999999999765322 2223347777788888889888
Q ss_pred cCCHHHHHHH
Q 006606 246 IYKNEYIEAL 255 (639)
Q Consensus 246 i~~~~~l~~L 255 (639)
+....|--.+
T Consensus 780 VQt~eQYiFi 789 (1087)
T KOG4228|consen 780 VQTEEQYIFI 789 (1087)
T ss_pred cccHHHHHHH
Confidence 7766554443
No 87
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=94.32 E-value=0.66 Score=51.82 Aligned_cols=115 Identities=14% Similarity=0.220 Sum_probs=77.4
Q ss_pred CCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccC--CCeEEEEcCCCCChh
Q 006606 138 GRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHS--KKYILVHCTHGHNRT 215 (639)
Q Consensus 138 ~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~--~~~VlVHC~~G~~RT 215 (639)
......||+++.+.. ....+ .....|+++++.+. - -....+...+..+..|+...... +..|+|+|..|...|
T Consensus 316 ~~~~~~vI~~s~~~~--~~~~~-~~~~~~L~l~i~~~-K-~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlS 390 (451)
T PF04179_consen 316 ESEFDCVINCSESPT--PKESW-PKSPKYLHLPIPSS-K-KGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLS 390 (451)
T ss_pred CCCcCEEEEcCCCcc--ccccc-CCCceEEeCcCCCC-c-ccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHH
Confidence 356777888874421 11122 24678999999864 2 34467888888999999876555 889999999999999
Q ss_pred HHHHHHHHHHhcCC--C--------------HHHHHHHHHhcCCCccCCHHHHHHHHH
Q 006606 216 GYMIVHFLMRSQSM--S--------------VAQAIKKFAEVRPPGIYKNEYIEALYT 257 (639)
Q Consensus 216 G~li~aYLm~~~g~--s--------------~~eAi~~~~~~Rp~~i~~~~~l~~L~~ 257 (639)
.-++.|-|+...+- . +.+-+..+.+.+|.+.|...-+++...
T Consensus 391 VgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNs 448 (451)
T PF04179_consen 391 VGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNS 448 (451)
T ss_pred HHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99999988876542 1 233345555555555555555555433
No 88
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.67 E-value=0.11 Score=62.18 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHH----HhcC-CCHHHHHHHHHhcCCCccCCHHH
Q 006606 177 VPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLM----RSQS-MSVAQAIKKFAEVRPPGIYKNEY 251 (639)
Q Consensus 177 ~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm----~~~g-~s~~eAi~~~~~~Rp~~i~~~~~ 251 (639)
+|.......++..+.+-.++ ....+++.|||..|.||||+.+|+-++ +..+ +++=+|++.++..||..+....+
T Consensus 995 ~p~~~~~~~~i~~~~~~~q~-~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~Q 1073 (1087)
T KOG4228|consen 995 PPQSKGPISKIPSVASKWQQ-LGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQ 1073 (1087)
T ss_pred CCCCcchhhhHHHHHHHHHh-hcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHH
Confidence 44433333334444444432 233789999999999999998877654 3333 47889999999999999998888
Q ss_pred HHHHHHH
Q 006606 252 IEALYTF 258 (639)
Q Consensus 252 l~~L~~~ 258 (639)
.+.+++-
T Consensus 1074 Y~fcYdv 1080 (1087)
T KOG4228|consen 1074 YQFCYDV 1080 (1087)
T ss_pred HHHHHHH
Confidence 7777653
No 89
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=92.85 E-value=4.7 Score=47.51 Aligned_cols=162 Identities=16% Similarity=0.188 Sum_probs=86.5
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C-cCCCcCCcccccccCCCCeEeeEEEEEecCC-------
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M-RFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP------- 393 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~-~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~------- 393 (639)
.|+|++|.||+-+-|...++. +..++|.+-.. .++ + ..+.. +..+.........+-||+++....
T Consensus 109 ~~~~epKiDGlsisL~Y~~G~L~~a~TRGDG~~GeDvT~n~~~I~~I--P~~l~~~~p~~levRGEv~m~~~~F~~lN~~ 186 (665)
T PRK07956 109 TYLCELKIDGLAVSLLYENGVLVRAATRGDGTTGEDITANVRTIRSI--PLRLHGNEPERLEVRGEVFMPKADFEALNEE 186 (665)
T ss_pred ceEEEEecccEEEEEEEECCEEEEEEecCCCccchhHhhhhhhhccC--ChhhcccCCCeEEEEEEEEEEHHHHHHHHHH
Confidence 599999999999877776554 57899964321 111 1 11100 011100112236789999985321
Q ss_pred -----C-----C----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCC
Q 006606 394 -----D-----S----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRN 447 (639)
Q Consensus 394 -----~-----~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~ 447 (639)
+ . ....+.|++|++...++ ........+++..|.++-... +
T Consensus 187 ~~~~g~~~faNpRNaaAGslr~ld~~~~~~r~L~f~~y~~~~~~~-~~~~~t~~e~l~~L~~~GF~v------------~ 253 (665)
T PRK07956 187 RREEGEKPFANPRNAAAGSLRQLDPKITAKRPLSFFAYGVGEVEG-GELPDSQSEALEFLKAWGFPV------------N 253 (665)
T ss_pred HHhcCCCcccChHHHHhhhhhccChHHHhcCCCEEEEEecccccC-CCCCCCHHHHHHHHHHCCCCc------------C
Confidence 0 0 02467899999864331 111246678888887743211 1
Q ss_pred CCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCC------CccCCCCCeEEEecCCCc
Q 006606 448 PYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARMN 514 (639)
Q Consensus 448 p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~sp------Y~~G~~~~llKWKp~~~n 514 (639)
++ ..... .+..+...++.+ -..+.+..||||++-.+.. |..+....-+=||+|...
T Consensus 254 ~~--------~~~~~---~~~ei~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG~t~~~PrWaiA~Kf~~~~ 318 (665)
T PRK07956 254 PY--------RKLCT---SIEEVLAFYEEIEEERHDLPYDIDGVVIKVDDLALQEELGFTAKAPRWAIAYKFPAEE 318 (665)
T ss_pred Cc--------eEeeC---CHHHHHHHHHHHHHhhccCCCCCCcEEEEecCHHHHHhcCccCCCCCceeEecCCCce
Confidence 11 11111 122333333333 3578899999999975533 332233456667766543
No 90
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=92.62 E-value=2.6 Score=44.93 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=86.0
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCcCCCcCC-cccccccCCCCeEeeEEEEEecCC---------
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNS-NEGLGEKTHHFTLLDGEMIIDKLP--------- 393 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~-~~~~~~~~~~~tlLDGElV~d~~~--------- 393 (639)
.|+|++|.||+-+-|...++. +..++|.+-.. .|+.......+ +..+. .......+=||+++....
T Consensus 102 ~~~vepKiDGlsisL~Y~~G~L~~a~TRGdG~~GeDVT~nv~~I~~IP~~i~-~~~~~levRGEv~m~~~~F~~~n~~~~ 180 (307)
T cd00114 102 AYVVEPKIDGLSISLRYENGVLVQAATRGDGTTGEDVTENVRTIRSIPLTLA-GAPETLEVRGEVFMPKADFEALNKERE 180 (307)
T ss_pred cEEEEEeccceEEEEEEECCEEEEEEecCCCcchhhHHhhHhhhcccChhhc-CCCCeEEEEEEEEEEHHHHHHHHHHHH
Confidence 699999999999877776554 67899964321 11110000000 01110 002246889999985310
Q ss_pred --------CC----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCC
Q 006606 394 --------DS----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 449 (639)
Q Consensus 394 --------~~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~ 449 (639)
+. ....+.|++|++...++.. .....+++..|+++-... ++.
T Consensus 181 ~~~~~~faNpRNaaAGsLr~ld~~~~~~r~L~f~~y~~~~~~~~~--~~t~~e~l~~L~~~GF~v------------~~~ 246 (307)
T cd00114 181 ERGEKPFANPRNAAAGSLRQLDPKITAKRPLRFFIYGLGEAEGLG--PKTQSEALAFLKEWGFPV------------SPE 246 (307)
T ss_pred HcCCCCccChHHHHHHHHHhcCcchhhcCcceEEEEecccccCCC--CCCHHHHHHHHHHCCCCC------------CCC
Confidence 00 0245789999986443212 346788888888743211 111
Q ss_pred ccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCCc--cCC----CCCeEEEecC
Q 006606 450 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYV--PRT----HEGLLKWKYA 511 (639)
Q Consensus 450 ~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~spY~--~G~----~~~llKWKp~ 511 (639)
....+ .+..+....+.+ ...+.+..||||++-.+.++. .|. ...-+=||+|
T Consensus 247 --------~~~~~---~~~ev~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG~tsk~PrWaiA~Kf~ 306 (307)
T cd00114 247 --------TRLCK---NIEEVLAFYDEIEAKRDSLPYEIDGVVVKVDDLALQRELGFTSKAPRWAIAYKFP 306 (307)
T ss_pred --------eEEeC---CHHHHHHHHHHHHHhhhcCCCCCCcEEEEEeCHHHHHHhCccCCCCCceEEeCCC
Confidence 01111 123333333333 456889999999998665442 232 2345556654
No 91
>PF09414 RNA_ligase: RNA ligase; InterPro: IPR021122 This entry represents the RNA ligase domain. RNA ligase enzyme repairs RNA strand breaks in nicked DNA:RNA and RNA:RNA but not in DNA:DNA duplexes []. Members of this RNA ligase family include: RNA editing ligase 1 (REL1) , which is essential for RNA editing and may be active in U-deletion editing [, , ]. RNA editing ligase 2 (REL2), which may be active in U-insertion editing []. RnlB RNA ligase 2 (or Rnl2), second RNA ligase of Enterobacteria phage T4 (Bacteriophage T4); unlike RNA ligase 1, RnlB prefers doule stranded substrates [, ]. ; PDB: 2HVS_B 2HVR_A 1S68_A 2HVQ_A 1XDN_A.
Probab=92.29 E-value=0.32 Score=47.46 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=53.1
Q ss_pred ceeeeecCceeEEEEEEECC-EEEEEeCCCccccccCcCCCcC-----------------Cccccc-ccCCCCeEeeEEE
Q 006606 327 YYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFPCRN-----------------SNEGLG-EKTHHFTLLDGEM 387 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~-~vyLidR~~~~~~v~~~FP~~~-----------------~~~~~~-~~~~~~tlLDGEl 387 (639)
+|+|+||.||+-+-+++..+ .+.+-.|+..+ .....|.... ....+. .....+.+|=||+
T Consensus 2 e~vvtEKldGtn~~i~~~~~~~~~~~~R~~~l-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GE~ 80 (186)
T PF09414_consen 2 EVVVTEKLDGTNFSIYFDNDGRVRFQSRSHIL-DPNEDFFGYQSGDNRYWAQARWLFELLKLAELASELLPENIIIYGEL 80 (186)
T ss_dssp EEEEEEE-SSEEEEEEEEECTCEEEEETTEE---TT---TTCHHHHHHCHHHHHHHHHHHHHHCCEC----SEEEEEEEE
T ss_pred eEEEEEEeCCccEEEEEeCCCceeEecccccc-CccccccccccchHHHHHHHHHHHhhhhhhhhcccccceEEEEEEEe
Confidence 68999999999998887654 46677776632 1111111000 000000 0123445666999
Q ss_pred EE--ecCCCCCC---ceeEEEEeEeeecCCe-eccCCCHHHHHHHHHH
Q 006606 388 II--DKLPDSRR---QERRYLIYDMMAINQA-SVIERPFYERWKMLEK 429 (639)
Q Consensus 388 V~--d~~~~~~~---~~~~yliFDiL~~~G~-~l~~~pf~eR~~~L~~ 429 (639)
+- ........ ....|++|||...+.. ...-+++.+...+++.
T Consensus 81 ~G~~~~Iq~~~~~~~~~~~F~~Fdi~~~~~~~~~~~l~~~~~~~~~~~ 128 (186)
T PF09414_consen 81 VGAKPSIQKNRYQLDPPKDFYVFDIYDIDEQGEIRYLSWDEVREFAEE 128 (186)
T ss_dssp ECEECTTCSS----ECCCEEEEEEEEEEETCCGEEE-HHHHHHHHHCC
T ss_pred eeecccccccccccCCCceEEEEEEEEcCCCCeeEECCHHHHHHHHHH
Confidence 96 32221111 1678999999998533 2344556666665544
No 92
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=92.09 E-value=0.46 Score=52.91 Aligned_cols=156 Identities=19% Similarity=0.251 Sum_probs=85.1
Q ss_pred CCCCCccccccc-hhhhhh-hcccceeeeecCceeEEEEEEECCEEEEEeCC--CccccccCcCCCcCCcccccccCCCC
Q 006606 305 MQFPGSHPVSLN-SDNLQL-LRQRYYYATWKADGTRYMMLITIDGCYLIDRC--FNFRRVQMRFPCRNSNEGLGEKTHHF 380 (639)
Q Consensus 305 ~~FPGsqPVsl~-r~~l~~-l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~--~~~~~v~~~FP~~~~~~~~~~~~~~~ 380 (639)
..|| |.+|+ ...|.. ..-.+|..-+-.--.-.||.......|+++=. +....+...+ +....+
T Consensus 570 ~s~p---~t~l~~~a~L~~t~pv~dyrfvp~gse~~nll~l~ks~~~~~rytes~rwe~i~~~~----------e~~Pr~ 636 (845)
T KOG3673|consen 570 NSFP---DTSLNCDAPLPNTIPVEDYRFVPLGSESPNLLILAKSSAFIFRYTESGRWESISADH----------ERIPRN 636 (845)
T ss_pred ccCC---chhccccccCccCcccceeEEEeccCCCcceEEEecccceEecccccCceEEeeccc----------eecccc
Confidence 4555 44554 333332 22345554443333444555555666666422 2222222221 012456
Q ss_pred eEeeEEEEEecCCCCCC--ceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCCcE
Q 006606 381 TLLDGEMIIDKLPDSRR--QERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFR 458 (639)
Q Consensus 381 tlLDGElV~d~~~~~~~--~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~ 458 (639)
|+|=-++|....+.++. ..-..-|.|.++++|.+|.++||.+|..+.++++..-.+ |. +..+.--.
T Consensus 637 t~l~v~iv~E~~GeGk~~~~~~avhIiD~~vL~G~Dvr~~py~eR~~~aeKFv~al~k-----------p~-Rkd~~~~a 704 (845)
T KOG3673|consen 637 TILLVDIVEEVVGEGKISSEPQAVHIIDAAVLFGDDVRNLPYEERMKAAEKFVAALKK-----------PN-RKDKKHRA 704 (845)
T ss_pred eeehHHHHHHHhcCccccccchheeeeeeeeecCchhhcccHHHHHHHHHHHHHHhcC-----------CC-Cccccccc
Confidence 77654555443322211 234577999999999999999999999999998732110 10 01111113
Q ss_pred EEecceeechhHHHHHHHhc-ccccCCC
Q 006606 459 VRRKDFWLLSTVNKLLKEFI-PKLSHDA 485 (639)
Q Consensus 459 I~~K~~~~~~~~~~l~~~~~-~~l~h~~ 485 (639)
++.|+-|.+....++|.++. ..+.|.+
T Consensus 705 ~r~Kp~yrL~em~~ff~nlehy~lk~ns 732 (845)
T KOG3673|consen 705 ERIKPTYRLAEMDEFFSNLEHYKLKHNS 732 (845)
T ss_pred eecccceeHHHHHHHHHhhhhhhhcCCc
Confidence 78899999888888776532 2455544
No 93
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=91.21 E-value=8.4 Score=45.58 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=85.8
Q ss_pred cceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--Cc----CCCcCCcccccccCCCCeEeeEEEEEecC----
Q 006606 326 RYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--MR----FPCRNSNEGLGEKTHHFTLLDGEMIIDKL---- 392 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~~----FP~~~~~~~~~~~~~~~tlLDGElV~d~~---- 392 (639)
..|++++|.||+=+-|.+.++. +..++|.+-.. .++ +. .|.. +.........+=||+++...
T Consensus 132 ~~~~~epKiDGlaisL~Ye~G~L~~a~TRGDG~~GeDVT~nv~~I~~IP~~-----l~~~~p~~levRGEv~m~~~~F~~ 206 (689)
T PRK14351 132 VEYVCEPKFDGLSVEVVYEDGEYQRAATRGDGREGDDVTANVRTIRSVPQK-----LRGDYPDFLAVRGEVYMPKDAFQA 206 (689)
T ss_pred ceEEEEEecccEEEEEEEECCEEEEEEecCCCCcceeHhhhhhhhcccchh-----hcccCCCeEEEEEEEEEEHHHHHH
Confidence 3699999999999987777554 67899964321 111 11 1211 10001123567899998432
Q ss_pred --------CC------------C---------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCcccccccccc
Q 006606 393 --------PD------------S---------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIY 443 (639)
Q Consensus 393 --------~~------------~---------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~ 443 (639)
+. . ....+.|++|++...++. .....++++.|.++-+.-
T Consensus 207 lN~~~~~~g~~~faNpRN~aAGslR~ldp~~~~~r~L~f~~y~~~~~~~~---~~t~~e~l~~L~~~GF~v--------- 274 (689)
T PRK14351 207 YNRERIERGEEPFANPRNAAAGTLRQLDPSVVAERPLDIFFFDVLDASEL---FDSHWEELERFPEWGLRV--------- 274 (689)
T ss_pred HHHHHHHcCCCCcCCHHHHHhhHhhccChHHHhcCCceEEEEecccCCCC---CCCHHHHHHHHHHCCCCc---------
Confidence 10 0 013578999998654431 246677888887643211
Q ss_pred ccCCCCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCC------ccCCCCCeEEEecCCC
Q 006606 444 QSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPY------VPRTHEGLLKWKYARM 513 (639)
Q Consensus 444 ~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~spY------~~G~~~~llKWKp~~~ 513 (639)
++. ...... +..+....+.+ -..+.+..||||++-.+..+ ..+....-+=||++..
T Consensus 275 ---~~~--------~~~~~~---~~~~~~~~~~~~~~R~~l~y~iDGiViKvn~~~~q~~lG~ts~~PrWaiA~Kf~~~ 339 (689)
T PRK14351 275 ---TDR--------TERVDD---IDDAIAYRDRLLAARDDLNYEIDGVVIKVDDRDAREELGATARAPRWAFAYKFPAR 339 (689)
T ss_pred ---CCc--------eEeeCC---HHHHHHHHHHHHHhhhcCCCCCceEEEEeCCHHHHHHhCccCCCCCceEEEcCCCc
Confidence 011 011111 22222222222 35688999999999866544 3222345566776654
No 94
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=91.05 E-value=12 Score=44.07 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=86.3
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C----cCCCcCCcccccc-cCCCCeEeeEEEEEecC----
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M----RFPCRNSNEGLGE-KTHHFTLLDGEMIIDKL---- 392 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~----~FP~~~~~~~~~~-~~~~~tlLDGElV~d~~---- 392 (639)
.|+|++|.||.-+-|...++. +..++|.+-.. .++ + ..|.. +.. .......+-||+++.+.
T Consensus 97 ~~~~epKiDGlaisL~Ye~G~L~~a~TRGDG~~GeDvT~nv~~I~~iP~~-----i~~~~~p~~levRGEv~m~~~~F~~ 171 (652)
T TIGR00575 97 EYVVEPKIDGLSVSLTYENGVLVRALTRGDGTVGEDVTANVRTIRSIPLR-----LAGDNPPERLEVRGEVFMPKEDFEA 171 (652)
T ss_pred eEEEEEeccceEEEEEEECCEEEEEEecCCCccchhHhhhhhhhcccchh-----hcCCCCCceEEEEEEEEEEHHHHHH
Confidence 599999999999877776554 57899964321 111 1 11211 100 01223678899998521
Q ss_pred --------CC-----C----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCcccccccccc
Q 006606 393 --------PD-----S----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIY 443 (639)
Q Consensus 393 --------~~-----~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~ 443 (639)
+. . ....+.|++|++.. +.........+++..|.++-...
T Consensus 172 ~N~~~~~~g~~~faNpRN~aAGslr~ld~~~~~~r~L~~~~y~~~~--~~~~~~~t~~e~l~~L~~~GF~v--------- 240 (652)
T TIGR00575 172 LNEERREQGEKPFANPRNAAAGSLRQLDPRITAKRKLRFFAYGLGE--GLELPDATQYEALAWLKKWGFPV--------- 240 (652)
T ss_pred HHHHHHHcCCCCCCCcHHHHHHHHHcCCchhhhcCccEEEEEeccc--cCCCCCCCHHHHHHHHHHCCCCC---------
Confidence 10 0 02457899999752 22222246678888887743211
Q ss_pred ccCCCCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCCc------cCCCCCeEEEecCCCc
Q 006606 444 QSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYV------PRTHEGLLKWKYARMN 514 (639)
Q Consensus 444 ~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~spY~------~G~~~~llKWKp~~~n 514 (639)
++. ....+ .+..+...++.+ -..+.+..||+|++-.+.++. .+....-+=||+|...
T Consensus 241 ---~~~--------~~~~~---~~~ei~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG~t~~~PrwaiA~Kf~~~~ 306 (652)
T TIGR00575 241 ---SPH--------IRLCD---SIEEVLEYYREIEEKRDSLPYEIDGVVVKVDDLALQDELGFTSKAPRWAIAYKFPAEE 306 (652)
T ss_pred ---CCC--------eEeeC---CHHHHHHHHHHHHHhhhcCCCCCCcEEEEecCHHHHHHhCccCCCCCceEEEcCCCce
Confidence 111 11111 122233333322 357889999999997665542 2223455677777554
No 95
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=90.95 E-value=9.6 Score=44.93 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=83.8
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCcCCCcCCcccccccC--CCCeEeeEEEEEecCC--------
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRNSNEGLGEKT--HHFTLLDGEMIIDKLP-------- 393 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~~~~~~~~~~--~~~tlLDGElV~d~~~-------- 393 (639)
.|+|++|.||+-+-|...++. +..++|.+-.. .++...-. ..++.... .....+-||+++....
T Consensus 111 ~~~~epKiDGlaisL~YenG~L~~a~TRGDG~~GEDVT~n~~~---I~~IP~~l~~~~~levRGEv~m~~~~F~~lN~~~ 187 (669)
T PRK14350 111 GISVEPKIDGCSIVLYYKDGILEKALTRGDGRFGNDVTENVRT---IRNVPLFIDEKVELVLRGEIYITKENFLKINKTL 187 (669)
T ss_pred eEEEEEecccEEEEEEEECCEEEEEEecCCCCcchhHhhhhhh---hcccchhcCCCceEEEEEEEEeeHHHHHHHHHhh
Confidence 599999999999877776554 57899964321 11110000 01111011 1346788999985320
Q ss_pred -----CC----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccC
Q 006606 394 -----DS----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRY 452 (639)
Q Consensus 394 -----~~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~ 452 (639)
+. ....+.|++|++...++ ......++++.|+++-... +|..
T Consensus 188 ~~~faNpRNaaAGsLr~~d~~~~a~r~L~f~~y~~~~~~~---~~~t~~e~l~~L~~~GF~v------------~~~~-- 250 (669)
T PRK14350 188 EKPYTNARNLASGILRRIDSREVANFPLDIFVYDILYSSL---ELKTNHDAFDKLKKFGFKV------------NPFC-- 250 (669)
T ss_pred hccCCChhHHHHHHHHccCchhhhcCceEEEEEEcccCCC---CCCCHHHHHHHHHHCCCCC------------Ccce--
Confidence 00 01367899999853221 1235678888888743221 1110
Q ss_pred CCCCcEEEecceeechhHHHHHH---HhcccccCCCceEEEEeCCCC------CccCCCCCeEEEecCCCc
Q 006606 453 DLEPFRVRRKDFWLLSTVNKLLK---EFIPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARMN 514 (639)
Q Consensus 453 ~~~pf~I~~K~~~~~~~~~~l~~---~~~~~l~h~~DGLIf~p~~sp------Y~~G~~~~llKWKp~~~n 514 (639)
......-.+..+...++ +....+.+..||||++-.+.- |..+....-+=||+|...
T Consensus 251 ------~~~~~~~~~~e~~~~~~~~~~~R~~l~y~iDGiViKvn~~~~q~~lG~ts~~PrWaiA~Kf~~~~ 315 (669)
T PRK14350 251 ------RFFDGKNSIEEILNYVKDIEKKRNSFEYEIDGVVLKVSDFALREILGYTSHHPKWSMAYKFESLS 315 (669)
T ss_pred ------EEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHhcCCcCCCCCceEEEcCCCce
Confidence 00000000112222222 223568899999999975542 332223455666766543
No 96
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=90.83 E-value=8.2 Score=44.44 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=85.5
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C-cCCCcCCcccccccCCCCeEeeEEEEEecCC-------
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M-RFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP------- 393 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~-~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~------- 393 (639)
.|++++|.||.=+-|...++. +..++|.+-.. .|+ + .++.. +..+. .......+-||++.....
T Consensus 119 ~~~vepKiDGlsisL~Ye~G~Lv~a~TRGDG~~GEDVT~nv~~I~~I--P~~l~-~~~~~levRGEv~m~~~~F~~~~~g 195 (562)
T PRK08097 119 DLWVQPKVDGVAVTLVYRDGKLVQAISRGNGLKGEDWTAKARLIPAI--PQQLP-GALANLVLQGELFLRREGHIQQQMG 195 (562)
T ss_pred ceEEEEecccEEEEEEEECCEEEEEEecCCCccchhHHhhHhhhccc--chhhc-CCCCeEEEEEEEEEeHHHHHHHhcC
Confidence 699999999999887776554 57899964321 111 0 11100 01110 001246789999985321
Q ss_pred --CC---------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCCccCCCCC
Q 006606 394 --DS---------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEP 456 (639)
Q Consensus 394 --~~---------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~p 456 (639)
+. ....+.|++|++. +| .....+++..|+++-..- +|.
T Consensus 196 ~aNPRN~AAGsLr~~d~~~~~r~L~~f~y~~~--~~----~~t~~e~l~~L~~~GF~v------------~~~------- 250 (562)
T PRK08097 196 GINARAKVAGLMMRKDPSPTLNQIGVFVWAWP--DG----PASMPERLAQLATAGFPL------------TQR------- 250 (562)
T ss_pred cCCchHHHhHHHhhcCcHhhhccceEEEEECC--CC----CCCHHHHHHHHHHCCCCc------------Ccc-------
Confidence 00 0134679999973 44 236778888887643210 110
Q ss_pred cEEEecceeechhHHHHHHHh-cccccCCCceEEEEeCCCCCccCC----CCCeEEEecCCCc
Q 006606 457 FRVRRKDFWLLSTVNKLLKEF-IPKLSHDADGLVFQGWDDPYVPRT----HEGLLKWKYARMN 514 (639)
Q Consensus 457 f~I~~K~~~~~~~~~~l~~~~-~~~l~h~~DGLIf~p~~spY~~G~----~~~llKWKp~~~n 514 (639)
+..... .+..+....+.+ ...+.++.||||++-.+..|.-|. ...-+=||++...
T Consensus 251 ~~~~~~---~~~~i~~~~~~~~r~~l~y~iDGiViKvn~~~~~~~~ts~~PrWAiAyKf~~~~ 310 (562)
T PRK08097 251 YTHPVK---NAEEVARWRERWYRAPLPFVTDGVVVRQAKEPPGRYWQPGQGEWAVAWKYPPVQ 310 (562)
T ss_pred ceEeeC---CHHHHHHHHHHHhhccCCCCCCcEEEEecCHHHHhhccCCCCCceEEEcCCCcE
Confidence 111111 122333333332 356789999999998776665442 2345666766553
No 97
>smart00532 LIGANc Ligase N family.
Probab=90.52 E-value=3.1 Score=46.56 Aligned_cols=163 Identities=16% Similarity=0.108 Sum_probs=87.7
Q ss_pred ceeeeecCceeEEEEEEECCE-EEEEeCCCccc--cccCcCCCcC-CcccccccCCCCeEeeEEEEEecCC---------
Q 006606 327 YYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQMRFPCRN-SNEGLGEKTHHFTLLDGEMIIDKLP--------- 393 (639)
Q Consensus 327 ~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~~~FP~~~-~~~~~~~~~~~~tlLDGElV~d~~~--------- 393 (639)
.|+|++|.||+-+-|...++. +..++|.+-.. .++....... -+..+.........+-||+++....
T Consensus 104 ~~~~epKiDGlsisL~Ye~G~l~~a~TRGDG~~GeDVT~nv~~i~~iP~~i~~~~p~~leiRGEv~~~~~~F~~ln~~~~ 183 (441)
T smart00532 104 AYVVEPKIDGLSVSLLYENGKLVQAATRGDGTVGEDVTQNVKTIRSIPLRLSGDVPERLEVRGEVFMPKEDFLALNEELE 183 (441)
T ss_pred eEEEEEecccEEEEEEEECCEEEEEEecCCCCcceehhhhhhhhcCcChhhcccCCCeEEEEceEEEEHHHHHHHHHHHH
Confidence 699999999999877776554 67899964321 1111000000 0011100011246788999985421
Q ss_pred --------CC----------------CCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCccccccccccccCCCC
Q 006606 394 --------DS----------------RRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIYQSRNPY 449 (639)
Q Consensus 394 --------~~----------------~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~~~~~p~ 449 (639)
+. ....+.|++|++...++... .....+++..|.++-+.. +++
T Consensus 184 ~~g~~~faNpRN~aAG~lr~ld~~~~~~r~L~~~~y~~~~~~~~~~-~~t~~e~l~~L~~~GF~v------------~~~ 250 (441)
T smart00532 184 EEGEKPFANPRNAAAGSLRQLDPRITAKRKLRAFFYGLGTGEELFL-PKTQSEALKWLKELGFPV------------SPH 250 (441)
T ss_pred hcCCCcccChHHHHHHHHHhcCchhhhhccceEEEEEcccCCCCCC-ccCHHHHHHHHHHCCCCC------------CCC
Confidence 00 01367899999864433211 245788888888743211 111
Q ss_pred ccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCCCcc--CC----CCCeEEEecCCC
Q 006606 450 YRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDPYVP--RT----HEGLLKWKYARM 513 (639)
Q Consensus 450 ~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~spY~~--G~----~~~llKWKp~~~ 513 (639)
.-..+. +..+....+.+ ...+.+..||||++-.+..+.- |. ...-+=||++..
T Consensus 251 --------~~~~~~---~~ei~~~~~~~~~~r~~l~y~iDGiViKvn~~~~~~~lG~ts~~PrwaiA~Kf~~~ 312 (441)
T smart00532 251 --------TRLCKN---ADEVIEYYEEWEEKRAELPYEIDGVVVKVDDLALQRELGFTSKAPRWAIAYKFPAE 312 (441)
T ss_pred --------eEeeCC---HHHHHHHHHHHHHhcccCCCCcCcEEEEecCHHHHHHhCccCCCCCeeEEECCCCc
Confidence 111111 22333333322 3568899999999986665543 42 234666776654
No 98
>PF05098 LEF-4: Late expression factor 4 (LEF-4); InterPro: IPR007790 The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) virus encodes a DNA-dependent RNA polymerase that is required for transcription of viral late genes. This polymerase is composed of four equimolar subunits, LEF-8, LEF-4, LEF-9, and p47. LEF-4 carries out all the enzymatic functions related to mRNA capping []. ; GO: 0006355 regulation of transcription, DNA-dependent
Probab=90.51 E-value=7.3 Score=43.20 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=108.6
Q ss_pred ccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEEecCCCCCCceeEEEE
Q 006606 325 QRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMIIDKLPDSRRQERRYLI 404 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~~~~~~~~~yli 404 (639)
..-++...|.||+|.=-+++.+.+++.-=++.++...+. |.+- + ...-.-|=-|+|-++ +|+|
T Consensus 233 ~dv~~WAlKLDGvRGkG~~~~~~~~i~~DDMq~fsg~l~-~~~f---~----~Nnvv~fQcE~i~~~---------~~YI 295 (450)
T PF05098_consen 233 SDVKKWALKLDGVRGKGYFTNGFIIIQMDDMQMFSGKLD-PSPF---S----LNNVVAFQCELIDDE---------TFYI 295 (450)
T ss_pred cceeEEEEeecccceeeEEeccEEEEEEchhhhhhcccc-cchh---h----cccEEEEEEEEecCc---------eEEE
Confidence 345778899999999988888877776655554433320 1110 0 122355666777432 4788
Q ss_pred eEeeec-----CCeeccCC---CH----HHHHHHHHHHhcCccccccccccccCCCCccCCCCCcEEEecceeechhHHH
Q 006606 405 YDMMAI-----NQASVIER---PF----YERWKMLEKEVIEPRNYERHNIYQSRNPYYRYDLEPFRVRRKDFWLLSTVNK 472 (639)
Q Consensus 405 FDiL~~-----~G~~l~~~---pf----~eR~~~L~~~i~~p~~~~~~~~~~~~~p~~~~~~~pf~I~~K~~~~~~~~~~ 472 (639)
=|+|.+ |...--+. |+ ..=..+|... ......+ .. .......+.|+.-.|+......
T Consensus 296 TDlL~VfkY~YnNrtQYe~s~~~Y~id~~~Ai~~ln~l--~~~~~~~--~l------~~~~~~~~~vkFQ~F~~~p~~~- 364 (450)
T PF05098_consen 296 TDLLHVFKYKYNNRTQYECSLDPYNIDPLDAIECLNYL--NNANKKI--TL------KTNTNKTISVKFQQFFDPPLNV- 364 (450)
T ss_pred eeeeeeEEEeccCcceeEeccCccccCHHHHHHHHHHh--hccccce--EE------eccCCceEEEEEEeecCCcccc-
Confidence 888854 22211111 22 2223333321 0000000 00 0012345667777776532100
Q ss_pred HHHHhcccccCCCceEEEEeCCCCCccCCCCCeEEEecCCCceEEEEEEEecCCceeEEEEeCCeeeeecCceeEecCCC
Q 006606 473 LLKEFIPKLSHDADGLVFQGWDDPYVPRTHEGLLKWKYARMNSVDFLFEVTDDDRQLLYVFERGKKKLMEGSSVEFTDRE 552 (639)
Q Consensus 473 l~~~~~~~l~h~~DGLIf~p~~spY~~G~~~~llKWKp~~~nTvDF~l~~~~~~~~~L~~~~~g~~~~~~~~~~~f~~~~ 552 (639)
. -.-.-.+||.|.--.+. .+.|.| +.-|+...... ....|....|.- ....+. .+
T Consensus 365 --~---~y~t~ptDGfVvld~~~--------~yvKyK--~~kT~EleYd~----~~~~F~~~~G~~---~~~~i~---~~ 419 (450)
T PF05098_consen 365 --N---GYSTVPTDGFVVLDSNG--------RYVKYK--YVKTVELEYDA----GNNTFKSLFGPL---KNYEIV---SD 419 (450)
T ss_pred --C---CcccCCcCCEEEECCCC--------CEEEEe--ecceEEEEEEc----CCCeEEcCCCcc---ccceec---cc
Confidence 0 01223689998776544 455666 34566655522 122343322321 111111 23
Q ss_pred CCCCCceEEEEEEeCCCCeeEEEEEeCCCCCCC
Q 006606 553 PSFYSGKIIECTWDPDVQLWKCMRIRTDKSTPN 585 (639)
Q Consensus 553 ~~~~dg~IvEc~~d~~~~~W~~~R~R~DK~~pN 585 (639)
.....|.|-||.... ..-..++.|+|.-.||
T Consensus 420 ~~l~~~~IYE~vi~d--~~i~ViK~RpDRlvpn 450 (450)
T PF05098_consen 420 VQLEHGSIYECVITD--NVINVIKERPDRLVPN 450 (450)
T ss_pred cCccCCCEEEEEEEC--CEEEEEeeCCccCCCC
Confidence 335689999999974 6679999999999998
No 99
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=89.10 E-value=2.4 Score=45.32 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=59.1
Q ss_pred hcccceeeeecCceeEEEEEEECC-EEEEEeCCCccccccCcCC--Cc-CCc----cc----cccc---CCCCeEeeEEE
Q 006606 323 LRQRYYYATWKADGTRYMMLITID-GCYLIDRCFNFRRVQMRFP--CR-NSN----EG----LGEK---THHFTLLDGEM 387 (639)
Q Consensus 323 l~~~~Y~V~eK~DG~R~ll~i~~~-~vyLidR~~~~~~v~~~FP--~~-~~~----~~----~~~~---~~~~tlLDGEl 387 (639)
|....|.|+||.||.-+=++++++ .+-.-+|++.+..-...|- .. ... .. +... .....++=||+
T Consensus 22 l~~~ewvatEKlhGaNfsi~~~~~~~i~~akR~~~l~~~e~f~G~~~i~~~l~~~~~~l~~~l~~~~~~~~~~v~IyGEl 101 (325)
T TIGR02307 22 LGLTEWVAREKIHGTNFSIIIERDFKVTCAKRTGIILPNEDFFGYHILIKNYTASVKAIQDILETKAIIVVVSVQVFGEL 101 (325)
T ss_pred cCCceEEEEEEecCcceEEEEeCCceEEEeecccccCcccccccHHHHHHHHHHHHHHHHHHHhhhcccccceEEEEEEe
Confidence 556699999999999998888877 6777788865432111110 00 000 00 0000 12446788999
Q ss_pred EEecCCCCCC-ceeEEEEeEeeecCCeeccCCCHHHHHHHHHH
Q 006606 388 IIDKLPDSRR-QERRYLIYDMMAINQASVIERPFYERWKMLEK 429 (639)
Q Consensus 388 V~d~~~~~~~-~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~ 429 (639)
+-........ ....|++|||......+..=+++.+-...+.+
T Consensus 102 ~G~~~q~~~~Y~~~~fyaFdI~~~~~~~~~~L~~d~~~e~~~~ 144 (325)
T TIGR02307 102 AGPGYQKPVVYSDKDFYAFDIKYTETSDDVTLVDDYMMESFCN 144 (325)
T ss_pred ecCcccCccccccccEEEEEEEEeccCcceEecHHHHHHHHHH
Confidence 8543221100 13589999996642212344556555555444
No 100
>PHA02142 putative RNA ligase
Probab=87.59 E-value=4.8 Score=43.70 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=56.9
Q ss_pred cccceeeeecCceeEEEEEEEC---------------------CEEEEEeCCCccccc-cCcCCCcCCccccccc---CC
Q 006606 324 RQRYYYATWKADGTRYMMLITI---------------------DGCYLIDRCFNFRRV-QMRFPCRNSNEGLGEK---TH 378 (639)
Q Consensus 324 ~~~~Y~V~eK~DG~R~ll~i~~---------------------~~vyLidR~~~~~~v-~~~FP~~~~~~~~~~~---~~ 378 (639)
+...|.+|+|.||+-+-+|... +...+-+|++..... +-.|-......++.+. ..
T Consensus 167 ~~~~f~~TeKLDGsS~tvy~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~srn~~l~~~~~~~~W~~a~~~~i~~~l~~~~ 246 (366)
T PHA02142 167 ADVKFAKSLKLDGSSITMAWVTDPDLFLDLGTEDEPYAHDYDDAQFIVASRNQVLRYNADSKWWKGVENYQIVDRLKELG 246 (366)
T ss_pred cCceEEEEEEecceeEEEEEecCCcccccccccccccccccCCCceeEeeccccccccCCchHHHHHHHcCcHHHHHhhC
Confidence 3567999999999998888541 112233455431100 0000000000111111 12
Q ss_pred CCeEeeEEEEEecCCCCC--CceeEEEEeEeeecCCeeccCCCHHHHHHHHHHH
Q 006606 379 HFTLLDGEMIIDKLPDSR--RQERRYLIYDMMAINQASVIERPFYERWKMLEKE 430 (639)
Q Consensus 379 ~~tlLDGElV~d~~~~~~--~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~ 430 (639)
.+.-+=|||+--...+.. .....|++||+..++++. =+++.++..++++.
T Consensus 247 ~~iaIqGEl~Gp~IQ~N~~~~~~~~F~vF~v~~i~~~~--yl~~~e~~~~~~~~ 298 (366)
T PHA02142 247 MSVAIQGELMGPGIQKNRENFDKYRIFAFRAWFIDEQR--FATDEEFQDLCRTL 298 (366)
T ss_pred CcEEEEEEEecccccCccccCCCCceEEEEEEEeccce--eCCHHHHHHHHHHc
Confidence 466789999964331110 123589999998777654 56778887777764
No 101
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=84.41 E-value=5.8 Score=34.32 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=20.5
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.++..|+|+|..| +||.. ++.+| ...|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~-a~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEK-ASAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHH-HHHHH-HHhCCc
Confidence 4667999999988 68864 44555 446764
No 102
>PLN02160 thiosulfate sulfurtransferase
Probab=79.75 E-value=6 Score=36.76 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=19.9
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.++..|+|||..| +||... +..| ...|++
T Consensus 79 ~~~~~IivyC~sG-~RS~~A-a~~L-~~~G~~ 107 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKA-TTEL-VAAGYK 107 (136)
T ss_pred CCCCcEEEECCCc-HHHHHH-HHHH-HHcCCC
Confidence 4567899999999 688744 3434 445664
No 103
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=78.14 E-value=15 Score=31.52 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=19.9
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.++..|+|+|.+| +||. .++..|. ..|++
T Consensus 59 ~~~~~ivv~C~~G-~rs~-~aa~~L~-~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQ-FVAELLA-ERGYD 87 (100)
T ss_pred CCCCeEEEEcCCC-CcHH-HHHHHHH-HcCce
Confidence 3567899999999 4774 4555554 46764
No 104
>PRK01415 hypothetical protein; Validated
Probab=73.30 E-value=27 Score=36.05 Aligned_cols=105 Identities=20% Similarity=0.141 Sum_probs=54.5
Q ss_pred cCceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCH
Q 006606 101 GGCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDN 180 (639)
Q Consensus 101 ~~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~ 180 (639)
...|++|..|- .+.....+..-+|.++.+.++. .+ ..|||+.+.. ++.... +++- ..|+.
T Consensus 93 k~eiV~~g~~~---~~~~~~~g~~i~p~e~~~ll~~--~~-~vvIDVRn~~------E~~~Gh-------i~gA-inip~ 152 (247)
T PRK01415 93 KKEIVAMNVDD---LNVDLFKGEYIEPKDWDEFITK--QD-VIVIDTRNDY------EVEVGT-------FKSA-INPNT 152 (247)
T ss_pred eceEEecCCCC---CCccccCccccCHHHHHHHHhC--CC-cEEEECCCHH------HHhcCC-------cCCC-CCCCh
Confidence 34677777641 1211124556778887766642 23 4589998532 332211 1121 12222
Q ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 181 ASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 181 ~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
..+..|-..+..... ...++.|+++|++|. ||. .++++|.+ .|++
T Consensus 153 ~~f~e~~~~~~~~~~--~~k~k~Iv~yCtgGi-Rs~-kAa~~L~~-~Gf~ 197 (247)
T PRK01415 153 KTFKQFPAWVQQNQE--LLKGKKIAMVCTGGI-RCE-KSTSLLKS-IGYD 197 (247)
T ss_pred HHHhhhHHHHhhhhh--hcCCCeEEEECCCCh-HHH-HHHHHHHH-cCCC
Confidence 333333222211111 346789999999994 764 66777765 5654
No 105
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=72.03 E-value=81 Score=37.01 Aligned_cols=160 Identities=17% Similarity=0.226 Sum_probs=90.9
Q ss_pred cceeeeecCceeEEEEEEECCE-EEEEeCCCccc--ccc--C----cCCCcCCcccccccCCCCeEeeEEEEEecCC---
Q 006606 326 RYYYATWKADGTRYMMLITIDG-CYLIDRCFNFR--RVQ--M----RFPCRNSNEGLGEKTHHFTLLDGEMIIDKLP--- 393 (639)
Q Consensus 326 ~~Y~V~eK~DG~R~ll~i~~~~-vyLidR~~~~~--~v~--~----~FP~~~~~~~~~~~~~~~tlLDGElV~d~~~--- 393 (639)
..|++++|.||.-+-|+..++. +...+|.+-.. .++ + ..|.... + .....-+=||+...+.+
T Consensus 109 ~~y~~EpKiDGlsisL~YenG~Lv~aaTRGdG~~GEDiT~NvrtI~~IP~~l~--~----~p~~lEVRGEvfm~k~~F~~ 182 (667)
T COG0272 109 VEYVVEPKIDGLAISLVYENGKLVRAATRGDGTTGEDITANVRTIRSIPLKLP--G----APAVLEVRGEVFMPKEDFEA 182 (667)
T ss_pred cceEEEeecceEEEEEEEECCEEEEeeccCCCccccchhhhhhhHhhhhhhcc--C----CCceEEEEeEEEEeHHHHHH
Confidence 4799999999999877776553 56778864321 111 0 1122110 0 13345778999886431
Q ss_pred ---------C---------------------CCCceeEEEEeEeeecCCeeccCCCHHHHHHHHHHHhcCcccccccccc
Q 006606 394 ---------D---------------------SRRQERRYLIYDMMAINQASVIERPFYERWKMLEKEVIEPRNYERHNIY 443 (639)
Q Consensus 394 ---------~---------------------~~~~~~~yliFDiL~~~G~~l~~~pf~eR~~~L~~~i~~p~~~~~~~~~ 443 (639)
. +.+.++.+++|.+-...+. ..-....+++..|.++-..
T Consensus 183 lN~~~~~~g~~~faNpRNaAAGsLRqlD~~ita~R~L~~f~y~~~~~~~~-~~~~t~~e~l~~L~~~GF~---------- 251 (667)
T COG0272 183 LNEEREEEGEKPFANPRNAAAGSLRQLDPKITAKRKLGFFIYAVGDGEEG-LLADTQSERLAFLKAWGFP---------- 251 (667)
T ss_pred HHHHHHHhCCCCcCChhhhhhhhhhccCHHHHhcCCceEEEEeCCccCCC-CCccCHHHHHHHHHHcCCC----------
Confidence 0 0124688999988765544 4455678888888875321
Q ss_pred ccCCCCccCCCCCcEEEecceeechhHHHHHHHh---cccccCCCceEEEEeCCCC------CccCCCCCeEEEecCCCc
Q 006606 444 QSRNPYYRYDLEPFRVRRKDFWLLSTVNKLLKEF---IPKLSHDADGLVFQGWDDP------YVPRTHEGLLKWKYARMN 514 (639)
Q Consensus 444 ~~~~p~~~~~~~pf~I~~K~~~~~~~~~~l~~~~---~~~l~h~~DGLIf~p~~sp------Y~~G~~~~llKWKp~~~n 514 (639)
-+++ .+-+-....+....+.+ -+.+++..||+|++=.+-+ |+.+....-+=||+|-..
T Consensus 252 --v~~~-----------~~~~~~~~ev~~~~~~~~~~R~~L~y~IDGvViKvn~l~~q~~lG~tsk~PrWAiAyKFpa~e 318 (667)
T COG0272 252 --VNPY-----------TRLCKNADEVLAFYEEWEKKRASLPYDIDGVVIKVNDLALQRELGFTSKAPRWAIAYKFPAEE 318 (667)
T ss_pred --CCcH-----------hhhcCCHHHHHHHHHHHHhhcccCCCccceEEEEeccHHHHHHhCCccCCCceeeeecCCchh
Confidence 0110 01111222222222322 2579999999999975543 444444556667766543
Q ss_pred e
Q 006606 515 S 515 (639)
Q Consensus 515 T 515 (639)
.
T Consensus 319 ~ 319 (667)
T COG0272 319 A 319 (667)
T ss_pred e
Confidence 3
No 106
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=71.72 E-value=24 Score=30.41 Aligned_cols=91 Identities=18% Similarity=0.340 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcE-EEEeeccCC---CCCCCHHHHHHHHHHHHHHHHhcccCC
Q 006606 126 SFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIK-HVKIQCKGR---DAVPDNASVNNFVYEVTQFLSRQKHSK 201 (639)
Q Consensus 126 ~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~-y~~ip~~d~---~~~P~~~~i~~f~~~v~~fi~~~~~~~ 201 (639)
||+++.+.+ +..=-+|||+... .++....|. -+++|.... ........+..+. .........+
T Consensus 1 s~~el~~~l---~~~~~~liD~R~~------~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 67 (113)
T PF00581_consen 1 SPEELKEML---ENESVLLIDVRSP------EEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFL----KELGKKIDKD 67 (113)
T ss_dssp -HHHHHHHH---TTTTEEEEEESSH------HHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHH----HHHTHGSTTT
T ss_pred CHHHHHhhh---hCCCeEEEEeCCH------HHHHcCCCCCCcccccccccccccccccccccccc----cccccccccc
Confidence 456676665 2344569999843 233332221 366676321 1122223333222 2222223567
Q ss_pred CeEEEEcCCCCChhHHHHHH---HHHHhcCCC
Q 006606 202 KYILVHCTHGHNRTGYMIVH---FLMRSQSMS 230 (639)
Q Consensus 202 ~~VlVHC~~G~~RTG~li~a---YLm~~~g~s 230 (639)
..|+|+|..|. |++..+++ |.+...|++
T Consensus 68 ~~iv~yc~~~~-~~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 68 KDIVFYCSSGW-RSGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp SEEEEEESSSC-HHHHHHHHHHHHHHHHTTTS
T ss_pred ccceeeeeccc-ccchhHHHHHHHHHHHcCCC
Confidence 78999996664 55555444 446655664
No 107
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.12 E-value=8.3 Score=43.88 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=24.0
Q ss_pred hcccCCCeEEEEcCCCCChhHHHHHHHHHH
Q 006606 196 RQKHSKKYILVHCTHGHNRTGYMIVHFLMR 225 (639)
Q Consensus 196 ~~~~~~~~VlVHC~~G~~RTG~li~aYLm~ 225 (639)
.....+..|+|||.-|-.||+-+++.-++-
T Consensus 369 kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 369 KVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 334567899999999999999988765543
No 108
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=67.02 E-value=20 Score=38.96 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=18.1
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHH
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHF 222 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aY 222 (639)
..|..|+|||..|-.||+-+.+.-
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 578899999999999997665543
No 109
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=66.89 E-value=26 Score=37.52 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q 006606 122 GKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSK 201 (639)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~ 201 (639)
....++.++.+.+.. .+ ..|||+.+.. ++....| +|- ..++...+..|...+.+.+. ..++
T Consensus 111 ~~~is~~el~~~l~~--~~-~vlIDVR~~~------E~~~GhI-------~GA-i~ip~~~~~~~~~~l~~~~~--~~kd 171 (314)
T PRK00142 111 GTYLKPKEVNELLDD--PD-VVFIDMRNDY------EYEIGHF-------ENA-IEPDIETFREFPPWVEENLD--PLKD 171 (314)
T ss_pred CcccCHHHHHHHhcC--CC-eEEEECCCHH------HHhcCcC-------CCC-EeCCHHHhhhhHHHHHHhcC--CCCc
Confidence 345677777765532 23 3699998542 3332111 221 11222334444333322222 2367
Q ss_pred CeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 202 KYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 202 ~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
+.|+|+|+.| .||. .+++||.. .|++
T Consensus 172 k~IvvyC~~G-~Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 172 KKVVMYCTGG-IRCE-KASAWMKH-EGFK 197 (314)
T ss_pred CeEEEECCCC-cHHH-HHHHHHHH-cCCC
Confidence 8999999999 4775 55667765 5664
No 110
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=58.51 E-value=49 Score=29.56 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=19.0
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.+...|+|+|..| .||.. ++.+|. ..|.+
T Consensus 62 ~~~~~ivv~C~~G-~rs~~-aa~~L~-~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIA-AAEAAA-QAGFT 90 (117)
T ss_pred CCCCeEEEEcCCC-ccHHH-HHHHHH-HCCCC
Confidence 3567899999988 46664 444444 45653
No 111
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=57.10 E-value=25 Score=31.29 Aligned_cols=31 Identities=13% Similarity=-0.056 Sum_probs=21.5
Q ss_pred ccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 198 KHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 198 ~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
..++..|+|+|..| ++++..++..| ...|++
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 34678999999998 56666665555 445764
No 112
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=56.34 E-value=1.4e+02 Score=28.46 Aligned_cols=30 Identities=7% Similarity=-0.055 Sum_probs=22.2
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.++..|+|.|..|..||.. +++++...|++
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999988767765 56666666764
No 113
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=55.48 E-value=38 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=19.4
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.++..|+|+|..|. ||. .+ ++++...|+.
T Consensus 64 ~~~~~ivv~c~~g~-~s~-~~-~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSK-AA-AELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHH-HH-HHHHHHcCCc
Confidence 35679999999885 654 33 4455556764
No 114
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=51.98 E-value=19 Score=31.16 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=21.3
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
..++.|+|+|.+|. ||+ .++.+|.. .|++
T Consensus 59 ~~~~~ivv~C~~G~-rS~-~aa~~L~~-~G~~ 87 (110)
T COG0607 59 PDDDPIVVYCASGV-RSA-AAAAALKL-AGFT 87 (110)
T ss_pred CCCCeEEEEeCCCC-ChH-HHHHHHHH-cCCc
Confidence 46789999999994 774 66677776 4554
No 115
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Probab=51.91 E-value=1.2e+02 Score=33.00 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=50.2
Q ss_pred ccceeeeecCceeEEEEEEEC-CEEEEE------eCCCccccc-cCcCCCcCCccccccc----C-CCCeEeeEEEEEec
Q 006606 325 QRYYYATWKADGTRYMMLITI-DGCYLI------DRCFNFRRV-QMRFPCRNSNEGLGEK----T-HHFTLLDGEMIIDK 391 (639)
Q Consensus 325 ~~~Y~V~eK~DG~R~ll~i~~-~~vyLi------dR~~~~~~v-~~~FP~~~~~~~~~~~----~-~~~tlLDGElV~d~ 391 (639)
...|.+|+|.||+-+.++... ++-|+. +|+..+..- .-.|-......++.+. . ....-+=||++--.
T Consensus 158 ~~~~~~TeKldGss~tv~~~~~~~~~~~~~~Gvcsr~~~l~~~~~~~~W~~a~~~~i~~~l~~~~~~~~vaiqGEl~G~g 237 (341)
T TIGR02306 158 GEKVAKTEKLHGTSITVAWVTDEERFLVLSKGVASRNLVLRENADNKYWKAVENYQIVDRAKAAELRMSVAIFGEVMGPG 237 (341)
T ss_pred CceEEEEEEecceeEEEEEecCCcccccccceeecCCcccccCCCchhHHHHHhcChHHHHhhcccCceEEEEEEEeCcc
Confidence 367999999999998777542 222322 344332110 0000000000111011 1 23455889998543
Q ss_pred CCC--CCCceeE-EEEeEeeecCCeeccCCCHHHHHHHHHHH
Q 006606 392 LPD--SRRQERR-YLIYDMMAINQASVIERPFYERWKMLEKE 430 (639)
Q Consensus 392 ~~~--~~~~~~~-yliFDiL~~~G~~l~~~pf~eR~~~L~~~ 430 (639)
..+ ....... |.+|++ ..+|.. .=++..++..++.+.
T Consensus 238 IQ~n~Yg~~~~~~~f~F~v-~~~~~~-ryld~~~~~~~~~~~ 277 (341)
T TIGR02306 238 IQKNRYGFDKYRTVFAFRA-FFDGEQ-RFLTDEDFQDLCLTL 277 (341)
T ss_pred ccCCcCCCCCCceEEEEEE-EEcCcc-eecCHHHHHHHHHhc
Confidence 211 1112234 666766 333332 335788888877663
No 116
>PRK05320 rhodanese superfamily protein; Provisional
Probab=46.23 E-value=1.5e+02 Score=30.63 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHcC---CCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhccc
Q 006606 123 KRYSFKQVIHQLRVLG---RKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKH 199 (639)
Q Consensus 123 ~~~~~~~l~~~~~~~~---~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~ 199 (639)
...++.++.+.++... ..-..|||+.+.. +++...| +|.-.+|- ..+..|...+.+.... .
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~------E~~~Ghi-------~GAiniPl-~~f~~~~~~l~~~~~~--~ 173 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF------EVDVGTF-------DGALDYRI-DKFTEFPEALAAHRAD--L 173 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHH------HHccCcc-------CCCEeCCh-hHhhhhHHHHHhhhhh--c
Confidence 4566777766554311 1234699998542 3322111 22212332 3444443333333221 2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
+++.|+++|+.| .||. .++.+|.. .|++
T Consensus 174 kdk~IvvyC~~G-~Rs~-~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGG-IRCE-KAAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCC-HHHH-HHHHHHHH-cCCc
Confidence 578999999999 4665 56777765 5664
No 117
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=45.69 E-value=1.6e+02 Score=25.80 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=13.2
Q ss_pred CCCeEEEEcCCCCChhHH
Q 006606 200 SKKYILVHCTHGHNRTGY 217 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~ 217 (639)
....|+|||..|-.||..
T Consensus 65 ~~~~iv~~C~~~g~rs~~ 82 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPR 82 (113)
T ss_pred CCCEEEEECCCCCcccHH
Confidence 346899999986567654
No 118
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=44.31 E-value=30 Score=30.23 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSM 229 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~ 229 (639)
++..|+|||..|. ||. .++..| ...|+
T Consensus 65 ~~~~ivv~C~~G~-rs~-~a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSI-IGAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHH-HHHHHH-HHCCC
Confidence 4678999999995 774 344545 45676
No 119
>PF10640 Pox_ATPase-GT: mRNA capping enzyme N-terminal, ATPase and guanylyltransferase; InterPro: IPR019602 Viral mRNA capping enzymes catalyse the first two reactions in the mRNA cap formation pathway. They are a heterodimer consisting of a large and small subunit. This domain is the N terminus of the large subunit viral mRNA capping enzyme, and carries both the ATPase and the guanylyltransferase activities of the enzyme. The guanylyltransferase enzymatic region runs from residues 242 (leucine)-273(arginine) [], the core of the active site being the lysine residue at 260 []. The ATPase activity is at the very N-terminal part of the domain []. ; GO: 0004484 mRNA guanylyltransferase activity, 0004651 polynucleotide 5'-phosphatase activity
Probab=43.36 E-value=73 Score=33.60 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=45.7
Q ss_pred ccchhhhhhhcccceeeeecCceeEEEEEEECCEEEEEeCCCccccccCcCCCcCCcccccccCCCCeEeeEEEEE
Q 006606 314 SLNSDNLQLLRQRYYYATWKADGTRYMMLITIDGCYLIDRCFNFRRVQMRFPCRNSNEGLGEKTHHFTLLDGEMII 389 (639)
Q Consensus 314 sl~r~~l~~l~~~~Y~V~eK~DG~R~ll~i~~~~vyLidR~~~~~~v~~~FP~~~~~~~~~~~~~~~tlLDGElV~ 389 (639)
.|-++.+..+.-++++++-|+||+=.++.++.+++|+.=-...+ ..+||.... ......|=||++.
T Consensus 217 MLkkqdi~~ldl~~ly~tsKtDGv~~~V~i~~~~i~C~f~hl~y---~irY~~~~~-------i~~~i~l~gEa~K 282 (313)
T PF10640_consen 217 MLKKQDIPGLDLENLYITSKTDGVGTVVKITVKGIYCYFSHLGY---IIRYNANRN-------IDNPIVLYGEAIK 282 (313)
T ss_pred eeccccccccchhheEEEEeecCceEEEEEecCceEEEEEEeeE---EEEcccccC-------CCCceEEEeeeee
Confidence 56778888888899999999999998888888776543222221 234443322 2345677899996
No 120
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=43.31 E-value=1.2e+02 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=17.2
Q ss_pred cCCCeEEEEcC-CCCChhHHHHHHHHHH
Q 006606 199 HSKKYILVHCT-HGHNRTGYMIVHFLMR 225 (639)
Q Consensus 199 ~~~~~VlVHC~-~G~~RTG~li~aYLm~ 225 (639)
.....|+|||. +| .||+ .++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~-~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGP-RMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHH-HHHHHHHH
Confidence 45789999997 55 5665 45556654
No 121
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=41.94 E-value=40 Score=35.52 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHh----cccCC---CeEEEEcCCCCChhHHHH
Q 006606 182 SVNNFVYEVTQFLSR----QKHSK---KYILVHCTHGHNRTGYMI 219 (639)
Q Consensus 182 ~i~~f~~~v~~fi~~----~~~~~---~~VlVHC~~G~~RTG~li 219 (639)
.+.+|++.+.++++- ....| -.|+|=||.|.-||.+++
T Consensus 216 ~~~~f~~~~~~~l~~~lp~y~~egk~~ltIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 216 EAQEFLEKIEDLLDFLLPRYEKEGKSYLTIAIGCTGGQHRSVAIA 260 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEcCCCcCcHHHHH
Confidence 344555554444432 22233 389999999999999875
No 122
>PRK05569 flavodoxin; Provisional
Probab=40.34 E-value=2.3e+02 Score=25.75 Aligned_cols=114 Identities=7% Similarity=0.075 Sum_probs=60.8
Q ss_pred HHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCC
Q 006606 132 HQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHG 211 (639)
Q Consensus 132 ~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G 211 (639)
+.++..|..+ .++++.. ++..++.+...-.+-.|+-+.+..| +..+..|++.+.. ...+|+.|++-|++|
T Consensus 24 ~~~~~~g~~v-~~~~~~~----~~~~~~~~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~----~~~~~K~v~~f~t~g 93 (141)
T PRK05569 24 DGAKEAGAEV-TIKHVAD----AKVEDVLEADAVAFGSPSMDNNNIE-QEEMAPFLDQFKL----TPNENKKCILFGSYG 93 (141)
T ss_pred HHHHhCCCeE-EEEECCc----CCHHHHhhCCEEEEECCCcCCCcCC-hHHHHHHHHHhhc----cCcCCCEEEEEeCCC
Confidence 3333334433 4556653 2234565566667777776532233 3456666654422 123688999999998
Q ss_pred CC-hhHHHHHHHHHHhcCCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhh
Q 006606 212 HN-RTGYMIVHFLMRSQSMSVAQAIKKFAEVRPPGIYKNEYIEALYTFYHE 261 (639)
Q Consensus 212 ~~-RTG~li~aYLm~~~g~s~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~ 261 (639)
-+ ..+.-...-++...|+++-..+.. .+.++..-++++.++-..
T Consensus 94 ~~~~~~~~~~~~~l~~~g~~~~~~~~~------~~~p~~~~~~~~~~~g~~ 138 (141)
T PRK05569 94 WDNGEFMKLWKDRMKDYGFNVIGDLAV------NESPNKEELNSAKELGKK 138 (141)
T ss_pred CCCCcHHHHHHHHHHHCCCeEeeeEEE------ccCCCHHHHHHHHHHHHH
Confidence 65 232222334456567765332111 244667777777665443
No 123
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=38.52 E-value=51 Score=37.90 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=17.7
Q ss_pred CCCeEEEEcCCCCChhHHHHH
Q 006606 200 SKKYILVHCTHGHNRTGYMIV 220 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~ 220 (639)
.|-.|+|||.-|..||.-++.
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred CCCeEEEEccCCcchhHHHHH
Confidence 568999999999999976544
No 124
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=37.34 E-value=44 Score=34.76 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHh----cccCC---CeEEEEcCCCCChhHHHHH
Q 006606 181 ASVNNFVYEVTQFLSR----QKHSK---KYILVHCTHGHNRTGYMIV 220 (639)
Q Consensus 181 ~~i~~f~~~v~~fi~~----~~~~~---~~VlVHC~~G~~RTG~li~ 220 (639)
..+..|++.+.+|++- ....| -.|+|=||.|.-||.+++=
T Consensus 216 ~e~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae 262 (286)
T COG1660 216 PEVEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHHH
Confidence 3455566655555542 22333 4899999999999998753
No 125
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=36.93 E-value=92 Score=33.29 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 201 KKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 201 ~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
+..|+|+|..|-.||+.+ ++++...|++
T Consensus 74 ~~~vvvyC~~gG~RS~~a--a~~L~~~G~~ 101 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSL--AWLLAQIGFR 101 (311)
T ss_pred CCcEEEEECCCChHHHHH--HHHHHHcCCC
Confidence 345999997655688754 3455556773
No 126
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=35.56 E-value=36 Score=28.82 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=14.2
Q ss_pred CeEEEEcCCCCChhHHHHHH
Q 006606 202 KYILVHCTHGHNRTGYMIVH 221 (639)
Q Consensus 202 ~~VlVHC~~G~~RTG~li~a 221 (639)
+.|+|.|.+|+| |++|++.
T Consensus 1 ~kilvvCg~G~g-tS~ml~~ 19 (87)
T cd05567 1 KKIVFACDAGMG-SSAMGAS 19 (87)
T ss_pred CEEEEECCCCcc-HHHHHHH
Confidence 369999999998 5555444
No 127
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=35.13 E-value=1e+02 Score=33.66 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcE----EEEeeccCCCCCCCHHHHHHHHHHHHHHHHhccc
Q 006606 124 RYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIK----HVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKH 199 (639)
Q Consensus 124 ~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~----y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~ 199 (639)
+.++.++.+.++. + +. .+||+.. +++|+...|. .+++|.... .... .+.. . +. ..
T Consensus 272 ~~~~~el~~~l~~-~-~~-~lIDVR~------~~E~~~ghI~~~~gAinIPl~~l---~~~~---~~~~---~-l~--~~ 330 (370)
T PRK05600 272 RTDTTSLIDATLN-G-SA-TLLDVRE------PHEVLLKDLPEGGASLKLPLSAI---TDDA---DILH---A-LS--PI 330 (370)
T ss_pred ccCHHHHHHHHhc-C-Ce-EEEECCC------HHHhhhccCCCCCccEeCcHHHh---hcch---hhhh---h-cc--cc
Confidence 4567777766543 2 33 6899984 3455543442 445554321 1100 0111 1 11 11
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
++.+|+|||.+| .||. .++.+|.. .|++
T Consensus 331 ~~~~Ivv~C~sG-~RS~-~Aa~~L~~-~G~~ 358 (370)
T PRK05600 331 DGDNVVVYCASG-IRSA-DFIEKYSH-LGHE 358 (370)
T ss_pred CCCcEEEECCCC-hhHH-HHHHHHHH-cCCC
Confidence 234899999999 5776 45666654 5663
No 128
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=34.94 E-value=57 Score=34.44 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhc----ccCC---CeEEEEcCCCCChhHHHH
Q 006606 181 ASVNNFVYEVTQFLSRQ----KHSK---KYILVHCTHGHNRTGYMI 219 (639)
Q Consensus 181 ~~i~~f~~~v~~fi~~~----~~~~---~~VlVHC~~G~~RTG~li 219 (639)
....+|++.+.++++.. ...| -.|+|=|+.|.-||.+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 218 PEVEEFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 44556666655555432 2223 479999999999999874
No 129
>PRK07411 hypothetical protein; Validated
Probab=32.96 E-value=1e+02 Score=33.95 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
++..|+|||..|. ||.. ++.+| ...|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGIL-KEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH-HHcCCC
Confidence 4678999999885 7754 44444 556774
No 130
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=31.75 E-value=68 Score=27.12 Aligned_cols=30 Identities=13% Similarity=0.022 Sum_probs=18.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
++.+|+|+|..|...++..++..| ...|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCcc
Confidence 467899999998543344554444 445653
No 131
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=28.93 E-value=3.3e+02 Score=29.01 Aligned_cols=104 Identities=23% Similarity=0.231 Sum_probs=60.9
Q ss_pred CceeecCCCCccccccCCCCCCCCCHHHHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHH
Q 006606 102 GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNA 181 (639)
Q Consensus 102 ~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~ 181 (639)
..|+.|..|- ..+..-..+.-..|.++-+.+.. .+ ..|||..|. |. + -|-+.+ | -..|+.+
T Consensus 94 kEIV~lg~~d--dv~p~~~vG~yl~p~~wn~~l~D--~~-~vviDtRN~---YE---~---~iG~F~----g-Av~p~~~ 154 (308)
T COG1054 94 KEIVALGVED--DVDPLENVGTYLSPKDWNELLSD--PD-VVVIDTRND---YE---V---AIGHFE----G-AVEPDIE 154 (308)
T ss_pred hhheecCCCC--CcCccccccCccCHHHHHHHhcC--CC-eEEEEcCcc---ee---E---eeeeec----C-ccCCChh
Confidence 3456666652 12211112444567777766542 23 679999864 21 1 122322 3 2456677
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHHHHHhcCC
Q 006606 182 SVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHFLMRSQSM 229 (639)
Q Consensus 182 ~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~ 229 (639)
....|-..+.+..+ ...+++|+.-||.|+ |.- -+.+||.. .|+
T Consensus 155 tFrefP~~v~~~~~--~~~~KkVvmyCTGGI-RCE-Kas~~m~~-~GF 197 (308)
T COG1054 155 TFREFPAWVEENLD--LLKDKKVVMYCTGGI-RCE-KASAWMKE-NGF 197 (308)
T ss_pred hhhhhHHHHHHHHH--hccCCcEEEEcCCce-eeh-hhHHHHHH-hcc
Confidence 78888877777665 345679999999998 654 45666665 344
No 132
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=27.50 E-value=68 Score=27.25 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=19.2
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
..+.+|+|+|..| +|+. .++ +++...|+.
T Consensus 59 ~~~~~ivv~c~~g-~~s~-~~~-~~l~~~G~~ 87 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA-LAG-KTLQDMGLK 87 (103)
T ss_pred CCCCeEEEEcCCC-CcHH-HHH-HHHHHcChH
Confidence 4578999999887 5764 344 455556653
No 133
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.18 E-value=2.3e+02 Score=30.37 Aligned_cols=67 Identities=15% Similarity=0.321 Sum_probs=46.6
Q ss_pred CcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhc------------ccCCCeEEEEc-CCCCChhHHHHHHHHHHhcCC
Q 006606 163 GIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQ------------KHSKKYILVHC-THGHNRTGYMIVHFLMRSQSM 229 (639)
Q Consensus 163 gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~------------~~~~~~VlVHC-~~G~~RTG~li~aYLm~~~g~ 229 (639)
-+.--.+-+-+ ..+|.++++..-++...+|+.+- ...-+.|+||= +-|-|||.-+..-.+|.+-|+
T Consensus 318 rfRttQVyVG~-hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraGy 396 (472)
T KOG3824|consen 318 RFRTTQVYVGR-HIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAGY 396 (472)
T ss_pred ceeeeeEEecC-CCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcCC
Confidence 34445555544 47888888887777777887632 12346889997 579999999888777766565
Q ss_pred C
Q 006606 230 S 230 (639)
Q Consensus 230 s 230 (639)
.
T Consensus 397 P 397 (472)
T KOG3824|consen 397 P 397 (472)
T ss_pred C
Confidence 3
No 134
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=26.84 E-value=72 Score=27.02 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=19.5
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.++..|+|+|..| +||+. ++.+| ...|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 4567899999877 57755 34555 446653
No 135
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=26.75 E-value=82 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
.+..|+|+|..|. ||. .++.+| ...|++
T Consensus 55 ~~~~iv~~c~~G~-rs~-~aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RAD-MTASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHH-HHHHHH-HHcCCE
Confidence 4678999999984 665 445555 556764
No 136
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=25.94 E-value=3.3e+02 Score=24.40 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCceEEEEcCCCCC----CCCcc----hhhcCCcEEEEeeccC
Q 006606 128 KQVIHQLRVLGRKLGLVIDLTNTTR----YYPTS----DLKKEGIKHVKIQCKG 173 (639)
Q Consensus 128 ~~l~~~~~~~~~~I~~VIdLt~~~~----~y~~~----~~~~~gI~y~~ip~~d 173 (639)
+.+++.+.. .+|..|||+..-.+ .++.+ .+...||.|++++--+
T Consensus 3 e~f~~~l~~--~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 3 ERFYDLLKK--NGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHHHH--CCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 445554443 57999999875433 45543 3556899999998754
No 137
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.94 E-value=85 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=21.7
Q ss_pred ccCCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 198 KHSKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 198 ~~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
..++..|+|.|.+|-.||. .++++++..|++
T Consensus 83 i~~~~~vvvyC~~~G~rs~--~a~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQ--SLAWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHH--HHHHHHHHcCCc
Confidence 3467899999986545766 344788877874
No 138
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.92 E-value=1.7e+02 Score=31.53 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCC-------------------CHHHHHHHHHH
Q 006606 129 QVIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVP-------------------DNASVNNFVYE 189 (639)
Q Consensus 129 ~l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P-------------------~~~~i~~f~~~ 189 (639)
+|.+++++.| |+-++.....-+.+.++..|+..++|+--.-...| +.+.+. .
T Consensus 94 ~Lke~a~~~G-----i~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~----~ 164 (347)
T COG2089 94 QLKEYARKRG-----IIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIE----E 164 (347)
T ss_pred HHHHHHHHcC-----eEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHH----H
Confidence 3566655444 44444211111345567778888887653321122 123333 3
Q ss_pred HHHHHHhcccCCCeEEEEcCCCCChh
Q 006606 190 VTQFLSRQKHSKKYILVHCTHGHNRT 215 (639)
Q Consensus 190 v~~fi~~~~~~~~~VlVHC~~G~~RT 215 (639)
+.+++++... ...++.||+.++-=+
T Consensus 165 av~~~r~~g~-~~i~LLhC~s~YPap 189 (347)
T COG2089 165 AVAILRENGN-PDIALLHCTSAYPAP 189 (347)
T ss_pred HHHHHHhcCC-CCeEEEEecCCCCCC
Confidence 3455543332 357999999987533
No 139
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=25.17 E-value=1.6e+02 Score=25.03 Aligned_cols=28 Identities=36% Similarity=0.701 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 200 SKKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 200 ~~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
++..|+|+|..| .||. .++.+|.+ .|++
T Consensus 57 ~~~~vv~~c~~g-~rs~-~~~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSM-QVAQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHH-HHHHHHHH-cCCc
Confidence 477999999988 5764 44555555 6764
No 140
>PRK05568 flavodoxin; Provisional
Probab=24.29 E-value=5.3e+02 Score=23.28 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=60.6
Q ss_pred HHHHHHHcCCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcC
Q 006606 130 VIHQLRVLGRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCT 209 (639)
Q Consensus 130 l~~~~~~~~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~ 209 (639)
+.+.++..|..+ .+++++... ..++.+...-.+-.|+-.. ..+....+..|++.+... .+++.+++-|+
T Consensus 22 i~~~~~~~g~~v-~~~~~~~~~----~~~~~~~d~iilgsp~y~~-~~~~~~~~~~f~~~~~~~-----~~~k~~~~f~t 90 (142)
T PRK05568 22 IAEGAKENGAEV-KLLNVSEAS----VDDVKGADVVALGSPAMGD-EVLEEGEMEPFVESISSL-----VKGKKLVLFGS 90 (142)
T ss_pred HHHHHHHCCCeE-EEEECCCCC----HHHHHhCCEEEEECCccCc-ccccchhHHHHHHHhhhh-----hCCCEEEEEEc
Confidence 333344344444 356776432 2356556666677777654 333234577777654322 25788999898
Q ss_pred CCCC--hhHHHHHHHHHHhcCCCHHHH-HHHHHhcCCCccCCHHHHHHHHHHHhh
Q 006606 210 HGHN--RTGYMIVHFLMRSQSMSVAQA-IKKFAEVRPPGIYKNEYIEALYTFYHE 261 (639)
Q Consensus 210 ~G~~--RTG~li~aYLm~~~g~s~~eA-i~~~~~~Rp~~i~~~~~l~~L~~~y~~ 261 (639)
+|.+ .+.-.+... ++..|+..-.. + +-.+.+++..+++..++-.+
T Consensus 91 ~G~~~~~~~~~~~~~-l~~~g~~~~~~~~------~~~~~p~~~~l~~~~~~g~~ 138 (142)
T PRK05568 91 YGWGDGEWMRDWVER-MEGYGANLVNEGL------IVNNTPEGEGIEKCKALGEA 138 (142)
T ss_pred cCCCCChHHHHHHHH-HHHCCCEEeCCcE------EEecCCCHHHHHHHHHHHHH
Confidence 8874 333333333 45566643222 1 11123567777777665544
No 141
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=24.21 E-value=3.2e+02 Score=31.06 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=99.6
Q ss_pred ccccCCCCCCCCCccCCCCCCc-cc-CceeecCCCCccccccCCCCCCCCCHHHHHHHH---HHcCCCceEEEEcCCCCC
Q 006606 78 YKSYDRNKLPPGWLDCPPFGQE-IG-GCIIPSKVPLSEFFNDCIPPGKRYSFKQVIHQL---RVLGRKLGLVIDLTNTTR 152 (639)
Q Consensus 78 ~~~~~~~~~p~~W~~~~~~g~~-I~-~~fip~K~Pl~~~~~~~i~~~~~~~~~~l~~~~---~~~~~~I~~VIdLt~~~~ 152 (639)
.-|++.-++|++-..-+-+|.. || +|++....+ ..+..+..+..|.-..+...+ ...+ ..-+|+-|....-
T Consensus 46 ~aSG~~VGLP~GQmGNSEVGHlnIGAGRivyq~l~---rI~~aie~g~f~~n~~l~~~~~~v~~~~-~~lHlmGl~S~GG 121 (509)
T COG0696 46 KASGLAVGLPEGQMGNSEVGHLNIGAGRIVYQDLT---RIDKAIEDGSFFENPALLNAIDEVKANG-SALHLMGLVSDGG 121 (509)
T ss_pred hccccccCCCCCcccCccccceeeecceEeecccc---hhhhhhhcCcccccHHHHHHHHHhhhcC-ceEEEEecccCCc
Confidence 3467888999998877788865 75 688887743 334444444444444444333 2222 2234666654432
Q ss_pred CCC--------cchhhcCC--cEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCCChhHHHHHHH
Q 006606 153 YYP--------TSDLKKEG--IKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCTHGHNRTGYMIVHF 222 (639)
Q Consensus 153 ~y~--------~~~~~~~g--I~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~~G~~RTG~li~aY 222 (639)
.-+ .+...+.| .-|++.-..|++.+|. ...++++.+..++. ..|.+|.+++...|
T Consensus 122 VHSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~--s~~~~le~l~~~~~-------------~~g~~~iasi~GRY 186 (509)
T COG0696 122 VHSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPR--SALQYLEELEAKAK-------------EYGNGRIASISGRY 186 (509)
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCch--hHHHHHHHHHHHhh-------------ccCceEEEEEeeee
Confidence 221 13334565 4677777888765553 46667777777764 13444555555554
Q ss_pred H-HHh-cCCC-HHHHHHHHHhcCCCccCCHHHHHHHHHHHhhcCCCCCCCC
Q 006606 223 L-MRS-QSMS-VAQAIKKFAEVRPPGIYKNEYIEALYTFYHEKRLDSTPCP 270 (639)
Q Consensus 223 L-m~~-~g~s-~~eAi~~~~~~Rp~~i~~~~~l~~L~~~y~~~~~~~~~~p 270 (639)
. |.+ ..|. .+.|.+.+....... .....++.+...|..-....+.-|
T Consensus 187 YaMDRD~rWdRve~Ay~a~~~~~~~~-~~~~~~~~~~~~Y~~~~tDEFv~p 236 (509)
T COG0696 187 YAMDRDNRWDRVEKAYDALTYGEGEF-TANSAVEAVQASYARGITDEFVKP 236 (509)
T ss_pred eccccccchHHHHHHHHHHHcccccc-ccCCHHHHHHHHHhcCCCcccccc
Confidence 4 332 3476 888988888777532 234566777777776554433333
No 142
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=23.37 E-value=73 Score=33.12 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCCHHHHHHH
Q 006606 209 THGHNRTGYMIVHFLMRSQSMSVAQAIKK 237 (639)
Q Consensus 209 ~~G~~RTG~li~aYLm~~~g~s~~eAi~~ 237 (639)
-=|+||||.-+++-|+. |++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 35999999999998875 9999999765
No 143
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.88 E-value=1e+02 Score=27.60 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=19.4
Q ss_pred cCCCeEEEEcCCCCChhHHHHHHHHHHhcCC
Q 006606 199 HSKKYILVHCTHGHNRTGYMIVHFLMRSQSM 229 (639)
Q Consensus 199 ~~~~~VlVHC~~G~~RTG~li~aYLm~~~g~ 229 (639)
..+..|+|+|..| .||. .++.+|. ..|+
T Consensus 70 ~~~~~ivv~C~~G-~rs~-~aa~~L~-~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRG-NDSQ-TAVRKLK-ELGL 97 (122)
T ss_pred CCCCcEEEECCCC-CcHH-HHHHHHH-HcCC
Confidence 4578999999998 4765 4555554 4566
No 144
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=22.26 E-value=4.3e+02 Score=29.44 Aligned_cols=95 Identities=12% Similarity=0.295 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHc-CCCceEEEEcCCCCCCCCcchhhcCCcEEEEeeccCCCCCCCHHHHHHHH-----------HHHHHH
Q 006606 126 SFKQVIHQLRVL-GRKLGLVIDLTNTTRYYPTSDLKKEGIKHVKIQCKGRDAVPDNASVNNFV-----------YEVTQF 193 (639)
Q Consensus 126 ~~~~l~~~~~~~-~~~I~~VIdLt~~~~~y~~~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~-----------~~v~~f 193 (639)
+++.=+++++.. ..+--+|.||+.-. +-..+++.=++...+|+ |.+|--+.+.+.. +.+.+-
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLStgg---dl~~iR~~il~~s~vpv---GTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLSTGG---DLDEIRRAIIEASPVPV---GTVPIYQAAVEAARKYGSVVDMTEDDLFDV 148 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccCCC---CHHHHHHHHHHcCCCCC---cChhHHHHHHHHHhcCCChhhCCHHHHHHH
Confidence 344444444432 35678899998432 33444444445555565 4677543333331 122333
Q ss_pred HHhcccCC-CeEEEEcC----------------CCCChhHHHHHHHHHHh
Q 006606 194 LSRQKHSK-KYILVHCT----------------HGHNRTGYMIVHFLMRS 226 (639)
Q Consensus 194 i~~~~~~~-~~VlVHC~----------------~G~~RTG~li~aYLm~~ 226 (639)
|+++...| .-+-|||. .=+||-|.++++|+++.
T Consensus 149 ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n 198 (431)
T PRK13352 149 IEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHN 198 (431)
T ss_pred HHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHc
Confidence 33333344 58999994 12578999999999985
No 145
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=21.16 E-value=1.3e+02 Score=23.30 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhc
Q 006606 216 GYMIVHFLMRSQSMSVAQAIKKFAEV 241 (639)
Q Consensus 216 G~li~aYLm~~~g~s~~eAi~~~~~~ 241 (639)
-.-+...||...|++.++|++.++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44567789999999999999998753
No 146
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=20.98 E-value=1.5e+02 Score=30.90 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.5
Q ss_pred chhhcCCcEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccCCCeEEEEcC
Q 006606 157 SDLKKEGIKHVKIQCKGRDAVPDNASVNNFVYEVTQFLSRQKHSKKYILVHCT 209 (639)
Q Consensus 157 ~~~~~~gI~y~~ip~~d~~~~P~~~~i~~f~~~v~~fi~~~~~~~~~VlVHC~ 209 (639)
.-|++.|+.|+ =|++|| +.+.+.+.+ +..++-.++|+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGH----dl~~Li~~l-------~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH----DLEELIEVL-------ENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT-----HHHHHHHH-------HHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC----CHHHHHHHH-------HHHhcCCCCEEEEEe
Confidence 67899999999 489887 334444333 333566899999963
No 147
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=20.97 E-value=1.2e+02 Score=25.89 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHHHHHhcCCC
Q 006606 201 KKYILVHCTHGHNRTGYMIVHFLMRSQSMS 230 (639)
Q Consensus 201 ~~~VlVHC~~G~~RTG~li~aYLm~~~g~s 230 (639)
+..|+|+|..|. ||+.+ +. .+...|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~-a~-~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF-AA-FLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH-HH-HHHHcCCC
Confidence 678999999885 66543 33 44456663
Done!