BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006608
(639 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 240/412 (58%), Gaps = 35/412 (8%)
Query: 232 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 291
+E + + PE ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG
Sbjct: 139 REPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKG 195
Query: 292 VGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG 351
+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN A A S G
Sbjct: 196 IAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR-------AAAMANNLQKGSAG 248
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 410
RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 411 -NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 469
LNG E+ GR +KV VT+++ A++ D D+ E G+ L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARLAE 365
Query: 470 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQV 529
G + PA AL + + GA + S ++ + + T L A V
Sbjct: 366 G------TGLQIPPAAQQ-ALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASV 418
Query: 530 -PTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 588
P A ++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K
Sbjct: 419 QPLA-----------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK 467
Query: 589 DSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 639
+SA G VY++ + +A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 468 NSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 276 bits (705), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 240/412 (58%), Gaps = 35/412 (8%)
Query: 232 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 291
+E + + PE ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG
Sbjct: 139 REPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKG 195
Query: 292 VGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG 351
+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN A A S G
Sbjct: 196 IAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR-------AAAMANNLQKGSAG 248
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 410
RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 411 -NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 469
LNG E+ GR +KV VT+++ A++ D D+ E G+ L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARLAE 365
Query: 470 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQV 529
G + PA AL + + GA + S ++ + + T L A V
Sbjct: 366 G------TGLQIPPAAQQ-ALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASV 418
Query: 530 -PTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 588
P A ++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K
Sbjct: 419 QPLA-----------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK 467
Query: 589 DSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 639
+SA G VY++ + +A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 468 NSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 237/411 (57%), Gaps = 39/411 (9%)
Query: 232 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 291
+E + + PE ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG
Sbjct: 139 REPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKG 195
Query: 292 VGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG 351
+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN A A S G
Sbjct: 196 IAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR-------AAAMANNLQKGSAG 248
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 410
RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 411 -NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 469
LNG E+ GR +KV VT+++ A++ D D+ E G+ L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARLAE 365
Query: 470 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQV 529
G + PA AL + + GA + + T L Q T + + +
Sbjct: 366 G------TGLQIPPAAQQ-ALQMSGSLAFGAVADLQTR---LSQQTEASALAAAASVQPL 415
Query: 530 PTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589
T +C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+
Sbjct: 416 AT-------------QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN 462
Query: 590 SA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 639
SA G VY++ + +A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 463 SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 513
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 204/397 (51%), Gaps = 35/397 (8%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ERD+RTVF Q+ + R++Y+FF +AG VRD +++ D+ S RSKGV YVEF SV
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295
Query: 305 MAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM 364
AIALSG+ LLG PV+V+ +EAEKN ++ + P+ RL V N+HFN+
Sbjct: 296 AAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF----HRLCVSNIHFNL 351
Query: 365 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424
T++ ++ +FEPFG +E V L D+ KGFG++Q+ ARNAL ++ GR ++
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
Query: 425 VSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPA 484
V D+ TT L+ RS Q R+G ++T A
Sbjct: 412 VCLGNDK-----FTTETTSSMLKRFDETLARQERS-----QPSQRNGGSSTYESQDYREA 461
Query: 485 VNSTALPLPTAPLLGAASAVS--TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGV 542
P +P + ++ L+ L + + +L + + P +
Sbjct: 462 A-------PLSPTEEESRPITRDELMKKLARSEDISDNSKLVSEPEPP-----------I 503
Query: 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGEC-SKFGKLKHIFVEKDSAGFVYLRFENT 601
S C LL+NMF+P ET + ++++DV+ EC K+GK+ HI V + G ++++FEN
Sbjct: 504 RSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENA 563
Query: 602 QSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDS 638
A A LH RWF G+ I A+ + Y KFP++
Sbjct: 564 DFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPNA 600
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 174/297 (58%), Gaps = 25/297 (8%)
Query: 177 REVIERERSRDREVIERERSRDREVIERERSRDRELKEREKERESRDNDKESRRP-KEKK 235
R+ R RS DR RSRD +R R L + S+ + P +E
Sbjct: 96 RQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPVREPV 155
Query: 236 EQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYV 295
+ + PE ERD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YV
Sbjct: 156 DNLSPE---ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 212
Query: 296 EFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRL 355
EF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + +++A G +GG RL
Sbjct: 213 EFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRL---AAMANNLQKG----NGGPMRL 265
Query: 356 YVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-NLN 413
YVG+LHFN+TED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL LN
Sbjct: 266 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 325
Query: 414 GQLEIVGRAIKVSAVTDQSGLQDLGANTT---GDFDDDEGGGLSLNARSRALLMQKL 467
G E+ GR ++V VT++ D G + T GD + D G +A R LM KL
Sbjct: 326 G-FELAGRPMRVGHVTER---LDGGTDITFPDGDQELDLG-----SAGGRFQLMAKL 373
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ERD RT+ A + K + ++ E F A ++R V +SKG+ Y+EF
Sbjct: 391 ERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAE 445
Query: 305 MAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 363
G + G+ + + + EK Q GG +SG ++ L + NL ++
Sbjct: 446 KTFEEKQGTEIDGRSISLYYT-GEKGQNQDYR------GGKNSTWSGESKTLVLSNLSYS 498
Query: 364 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI
Sbjct: 499 ATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 555
Query: 424 KV 425
++
Sbjct: 556 RL 557
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 275 VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSN 334
V DVR+ M R GYV+F + A+ L+G + G + ++ + + + + +
Sbjct: 340 VVDVRIGMTRK------FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERD 393
Query: 335 SSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKG 394
AR L NL + +T+D+L++VFE + LV + G KG
Sbjct: 394 -----------------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG 432
Query: 395 FGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDL--GANTTGDFDDDEGGG 452
+++F DA EI GR+I + ++ QD G N+T
Sbjct: 433 IAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST---------- 482
Query: 453 LSLNARSRALLMQKLDRSGSATTI 476
+ S+ L++ L S + T+
Sbjct: 483 --WSGESKTLVLSNLSYSATEETL 504
Score = 39.7 bits (91), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
++ L+V L + TE+ L++ F+ G+V + ETG KGFGFV F EDA+ A
Sbjct: 573 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 628
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ERD RT+ A + K + ++ E F A ++R V +SKG+ Y+EF
Sbjct: 389 ERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAE 443
Query: 305 MAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 363
G + G+ + + + EK Q GG +SG ++ L + NL ++
Sbjct: 444 KTFEEKQGTEIDGRSISLYYT-GEKGQNQDYR------GGKNSTWSGESKTLVLSNLSYS 496
Query: 364 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI
Sbjct: 497 ATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 553
Query: 424 KV 425
++
Sbjct: 554 RL 555
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 41/204 (20%)
Query: 275 VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSN 334
V DVR+ M R GYV+F + A+ L+G + G + ++ + + + + +
Sbjct: 338 VVDVRIGMTRK------FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERD 391
Query: 335 SSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKG 394
AR L NL + +T+D+L++VFE + LV + G KG
Sbjct: 392 -----------------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKG 430
Query: 395 FGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDL--GANTTGDFDDDEGGG 452
+++F DA EI GR+I + ++ QD G N+T
Sbjct: 431 IAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST---------- 480
Query: 453 LSLNARSRALLMQKLDRSGSATTI 476
+ S+ L++ L S + T+
Sbjct: 481 --WSGESKTLVLSNLSYSATEETL 502
Score = 39.7 bits (91), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
++ L+V L + TE+ L++ F+ G+V + ETG KGFGFV F EDA+ A
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ERD RT+ A + K + ++ E F A ++R V +SKG+ Y+EF
Sbjct: 390 ERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAE 444
Query: 305 MAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 363
G + G+ + + + EK Q GG +SG ++ L + NL ++
Sbjct: 445 KTFEEKQGTEIDGRSISLYYT-GEKGQNQDYR------GGKNSTWSGESKTLVLSNLSYS 497
Query: 364 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI
Sbjct: 498 ATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 554
Query: 424 KV 425
++
Sbjct: 555 RL 556
Score = 39.7 bits (91), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
++ L+V L + TE+ L++ F+ G+V + ETG KGFGFV F EDA+ A
Sbjct: 572 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 627
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ERD RT+F I ++ E F A +D+R+ ++ +KG+ YVEF +
Sbjct: 321 ERDSRTLFVKNIPYSTTVEELQEIFENA---KDIRIPTGKDGS-NKGIAYVEFSNEDEAN 376
Query: 305 MAIA-LSGQPLLGQPVMVK-PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHF 362
A+ G + G+ + V E +N SG GP G ++ L V NL +
Sbjct: 377 KALEEKQGAEIEGRSIFVDFTGEKSQN-----------SGNKKGP-EGDSKVLVVNNLSY 424
Query: 363 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 422
+ TED LR+VFE ++ + Q G KGF F++F+ EDA++A++ EI GR+
Sbjct: 425 SATEDSLREVFEKATSIRIPQ----NQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRS 480
Query: 423 IKV 425
I++
Sbjct: 481 IRL 483
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSV 303
PE D + + + A E + E F +A +R + +N R+KG ++EF
Sbjct: 410 PEGDSKVLVVNNLSYSATEDSLREVFEKATSIR-----IPQNQGRAKGFAFIEFSSAEDA 464
Query: 304 PMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 363
A+ +E E ++ S G GG S ++ L+V L +
Sbjct: 465 KDAMDSCNN-----------TEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSED 513
Query: 364 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFA 401
TE+ L++ F+ G+V + +TG KGFGFV F+
Sbjct: 514 TTEETLKEAFD--GSVNARIVTDRDTGASKGFGFVDFS 549
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 61/180 (33%)
Query: 267 EFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSV--------------------PM 305
EFFS+ ++D+R+ SK GYV+F V M
Sbjct: 255 EFFSKKNLTIQDIRI------GNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAM 308
Query: 306 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMT 365
A +KN N +R L+V N+ ++ T
Sbjct: 309 AF-------------------DKNKTAENKK------------ERDSRTLFVKNIPYSTT 337
Query: 366 EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425
++L+++FE + +++P + G KG +V+F+ ++A AL EI GR+I V
Sbjct: 338 VEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 394
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 308
+T+FA + + DV FF AG+V DVR +R+ +G G+VEF A+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 309 LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASG----GGTGPYSGGARRLYVGNLHFNM 364
G+PLLG+ + + ++ E+ + SG GG G G ++++V ++
Sbjct: 357 FHGRPLLGREIRLDIAQ-ERGERGERPAFTPQSGNFRSGGDG---GDEKKIFVKGFDASL 412
Query: 365 TED----QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG 414
+ED LR+ F G ++ V +P+D +TG+ KG +++F+ E AL LNG
Sbjct: 413 SEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKALELNG 465
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405
P +GG++ L+ NL FN+ + F+ G V V+ + + G +GFG V+FA E+
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 406 ARNALNLNGQLEIVGRAIKV 425
A+ AL +G+ ++GR I++
Sbjct: 351 AQKALEFHGR-PLLGREIRL 369
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 47/196 (23%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 305
R RT+ A + E ++ E F A ++RL+ +SKG+ Y+EF
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVSQDG--KSKGIAYIEFKS------ 439
Query: 306 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSS----------IAGASG------GGTGPYS 349
++AEKNL + + G G G +S
Sbjct: 440 -----------------EADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWS 482
Query: 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
G ++ L + NL ++ TE+ L++VFE +++P ++ G KG+ F++FA EDA+ A
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQGKSKGYAFIEFASFEDAKEA 539
Query: 410 LNLNGQLEIVGRAIKV 425
LN ++EI GR I++
Sbjct: 540 LNSCNKMEIEGRTIRL 555
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
++ L+V L + TE+ L++ FE G+V + ETG KGFGFV F EDA+ A
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 47/196 (23%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 305
R RT+ A + E ++ E F A ++RL+ RSKG+ Y+EF
Sbjct: 394 RAARTLLAKNLSFNITEDELKEVFEDA---VEIRLVSQDG--RSKGIAYIEFKS------ 442
Query: 306 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSS----------IAGASG------GGTGPYS 349
++AEKNL + + G G G +S
Sbjct: 443 -----------------EADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWS 485
Query: 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
G ++ L + NL ++ TE+ L++VFE +++P + G KG+ F++FA EDA+ A
Sbjct: 486 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPHGKSKGYAFIEFASFEDAKEA 542
Query: 410 LNLNGQLEIVGRAIKV 425
LN ++EI GR I++
Sbjct: 543 LNSCNKMEIEGRTIRL 558
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
++ L+V L + TE+ L++ FE G+V + ETG KGFGFV F EDA+ A
Sbjct: 574 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 629
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 27/215 (12%)
Query: 209 DRELKEREKERESRDNDKESRRPKEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEF 268
D K+R+ E + D+ES K+K E+ E + T+F ++ D+ + +
Sbjct: 138 D---KKRKSEDAEEEEDEESSNKKQKNEETE-------EPATIFVGRLSWSIDDEWLKKE 187
Query: 269 FSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327
F G V R+I +R + RS+G GYV+F + AI + G+ + G+P+
Sbjct: 188 FEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPI-------- 239
Query: 328 KNLVQSNSSIAG----ASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQ 383
N S S AG A G P S + L++GNL FN D + ++F G V V+
Sbjct: 240 -NCDMSTSKPAGNNDRAKKFGDTP-SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVR 297
Query: 384 LPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQL 416
+P ET KGFG+VQF+ +EDA+ AL+ L G+
Sbjct: 298 IPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 355 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 413
++VG L +++ ++ L++ FE G V ++ + T +G+G+V F A A+
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 414 GQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEG-----GGLSLNARSRALL 463
EI GR I T + + A GD + G LS NA A+
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 30/210 (14%)
Query: 236 EQVEPE--------VDPERDQR---TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR 284
+ EP P +D TVF ++ D++ + + F G + R+IMD
Sbjct: 239 RKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG 298
Query: 285 NSRRSKGVGYVEFYDVMSVPMAIALSG-QPLLGQPVMVKPSEAEKNLVQSNSSIAGA--- 340
S RSKG GYV+F + A+A +G + + G+ V NL SN A
Sbjct: 299 QSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV---------NLDLSNPRPANPQPY 349
Query: 341 ----SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGF 395
+G S + ++VGNL FN TED L F G ++ ++LP D ++G KGF
Sbjct: 350 AQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGF 409
Query: 396 GFVQFARLEDARNALNLNGQLEIVGRAIKV 425
G+V F+ ++ A+ + +NG I GR ++
Sbjct: 410 GYVTFSDIDSAKKCVEMNGHF-IAGRPCRL 438
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 47/196 (23%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 305
R RT+ A + E ++ E F A ++RL+ +SKG+ Y+EF
Sbjct: 392 RAARTLLAKNLSFNITEDELKEVFEDA---MEIRLVSQDG--KSKGIAYIEFKS------ 440
Query: 306 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSS----------IAGASG------GGTGPYS 349
++AEKNL + + G G G T +S
Sbjct: 441 -----------------EADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWS 483
Query: 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
G ++ L + NL ++ T++ L +VFE +++P + G KG+ F++FA EDA+ A
Sbjct: 484 GESKTLVLSNLSYSATKETLEEVFE---KATFIKVPQNPHGKPKGYAFIEFASFEDAKEA 540
Query: 410 LNLNGQLEIVGRAIKV 425
LN ++EI GR I++
Sbjct: 541 LNSCNKMEIEGRTIRL 556
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
++ L+V L + TE+ L++ FE G+V + ETG KGFGFV F EDA+ A
Sbjct: 568 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 309
+F + D + +Y+ FS G + ++ D N + SKG G+V F + + AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDAL 186
Query: 310 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQL 369
+G L GQ + V P + K + +S + T LYV N++ T++Q
Sbjct: 187 NGMLLNGQEIYVAPHLSRK---ERDSQLEETKAHYT--------NLYVKNINSETTDEQF 235
Query: 370 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAI 423
+++F FG + L D G KGFGFV + + EDA A+ LNG+ VGRA
Sbjct: 236 QELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 424 K 424
K
Sbjct: 296 K 296
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 262 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 320
E +Y+ FS G V +R+ D ++ S G YV F D + AI L+ P+ G+
Sbjct: 51 EAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCR 110
Query: 321 VKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE 380
+ S+ + +L + G+ +++ NLH ++ L F FG +
Sbjct: 111 IMWSQRDPSLRKK-----------------GSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 381 LVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 426
++ DE G KGFGFV F A+ A++ LNG L + G+ I V+
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGML-LNGQEIYVA 199
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 355 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 414
L+V NL ++ +++L + F P+GT+ ++ E G KGFGFV F+ E+A A+
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 415 QLEIVGRAIKVS 426
Q + G+ + V+
Sbjct: 384 QQIVAGKPLYVA 395
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 322 KPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL 381
K +E +NL + A+G + + LYVG+L +++E L +F P G+V
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 66
Query: 382 VQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425
+++ D T G+ +V F E R A+ I GR ++
Sbjct: 67 IRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRI 111
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 285 NSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGG 344
N+ ++KG Y+ F +V + + LS L G+ +++K SE + +A +
Sbjct: 178 NAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKN-- 235
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP-LDETGHCKGFGFVQFARL 403
P S R L+VGNL F++T+D LR+ F+ G + +++ +++G CKGF F+ F
Sbjct: 236 --PPS---RILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNE 290
Query: 404 EDARNALNLNGQLEIVGRAIKVSAVTDQS------GLQDLGANTTGDFD 446
E + NAL +I GR +++ D+S ++++ N + FD
Sbjct: 291 EGSTNALKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSFD 339
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA-IAL 309
+F + D + F RAG V V +I D+ S RS+G G+V V A
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149
Query: 310 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG------------------ 351
+G + G+ + V A + NSS G GG + Y GG
Sbjct: 150 NGYEIDGRAIRVNAGPAPAK--RENSSFGGGRGGNS-SYGGGRDGNSSFGGARGGRSVDS 206
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 410
+ R+YVGNL + + + L+++F G V ++ D ++G +GFGFV ++ ++ +A+
Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266
Query: 411 -NLNGQLEIVGRAIKVSA 427
+LNG +++ GR+I+VSA
Sbjct: 267 DSLNG-IDLDGRSIRVSA 283
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 309
V+ + D+ + E FS G V D +++ DR+S RS+G G+V + V AI +L
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269
Query: 310 SGQPLLGQPVMVKPSE 325
+G L G+ + V +E
Sbjct: 270 NGIDLDGRSIRVSAAE 285
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 355 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 414
L++GNL FN+ +DQ+++ F+ G V V+L E G +GFG VQFA E+A+ AL L+G
Sbjct: 313 LFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHG 372
Query: 415 QLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRS 470
++ GR +++ ++ N TG F G S+++ ++ D S
Sbjct: 373 -CDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRG------SSQSIFVKGFDSS 421
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL 309
T+F + ++ V EFF G+V VRL + S+G G+V+F A+ L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGS-SRGFGHVQFASSEEAKKALEL 370
Query: 310 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYS----GGARRLYVGNLHFNMT 365
G L G+PV + +L + S TG + G ++ ++V ++
Sbjct: 371 HGCDLDGRPVRL-------DLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLE 423
Query: 366 EDQLRQVFEPF----GTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG 414
E ++R+ E G + V +P+D ETG KG ++ F AL L+G
Sbjct: 424 ESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSG 477
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 269 FSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 321
F+ G++ V + MDR + SKG+ Y++F D S A+ LSG L G + V
Sbjct: 435 FADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYV 487
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 28/229 (12%)
Query: 38 RSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSSC----HRSWSRDGGRD 93
RS SK + D K E +G K + SR H+ R E C HR D +
Sbjct: 612 RSDLSKHRHDGKAEKIRAEG------KGHETSRKHEGRSELSRDCKEERHREKDSDSSKG 665
Query: 94 RPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRD-RRERDHDTDRDREKDKEKERE 152
R RS R E +RD+++E+ D+ ++GR+++ + RD + +D+EKD+EK R+
Sbjct: 666 R-RSDTSKSSR-VEHNRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRD 723
Query: 153 KSHRSGSQSERYRSDRDERERSRDREVI---ERERSRDREVIERERSRDREV-IERERSR 208
K G ER + E+E+ RD+E + +++RS+D E RE+ +D+E+ +RE+++
Sbjct: 724 KEVEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKC-REKDQDKELEKDREKNQ 782
Query: 209 DREL---------KEREKERESRDNDKESRRPKEKKEQVEPEVDPERDQ 248
D+EL KE EK RE +D DKE + +EK + E E E+DQ
Sbjct: 783 DKELEKGREKDQDKELEKGRE-KDRDKEMEKAREKDQDKELEKGREKDQ 830
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 18/235 (7%)
Query: 21 EKETANGDGNVKS-EDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESR-NHDRRKER 78
EK A G G+ S + RS S+ +E+ + D D + R S + SR H+R KE+
Sbjct: 625 EKIRAEGKGHETSRKHEGRSELSRDCKEERHREKDSDSSKGRRSDTSKSSRVEHNRDKEQ 684
Query: 79 DSSCHRSWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRDRRERDHD 138
+ + D G ++ R + RD ER +D+++++ GRD+ ++GR ++R
Sbjct: 685 E----QEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERV----- 735
Query: 139 TDRDREKDKEKEREKSHRSGSQSERYRSDRDERERSRDREV-IERERSRDREVIE-RERS 196
+DR K++EK R+K G +R + RE+ +D+E+ +RE+++D+E+ + RE+
Sbjct: 736 --KDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKD 793
Query: 197 RDREVIERERSRDRELKEREKERESRDNDKESRRPKEKKEQVEPEVDPERDQRTV 251
+D+E +E+ R +DR+ KE EK RE +D DKE + +EK + E E E+D+ V
Sbjct: 794 QDKE-LEKGREKDRD-KEMEKARE-KDQDKELEKGREKDQDKELEKGQEKDRDKV 845
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 135/249 (54%), Gaps = 30/249 (12%)
Query: 19 AKEKETANGDGNVKSEDRVRSRS-SKC------KSDEKVEDYDDDGHRSRG-SKSRDESR 70
KE+E VK D+ RS+ KC K EK + + D +G K +D+
Sbjct: 739 VKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKEL 798
Query: 71 NHDRRKERDSSCHRSWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDR 130
R K+RD ++ +D ++ + + +D++ E+ +++DR++ R+++RD+ RD+
Sbjct: 799 EKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDK--VREKDRDKVRDK 856
Query: 131 DR-RERDHDTDRDREKDKEKEREKSHRSGSQSERYRS-DRDE-RERSRDREVIE-RERSR 186
DR + R+ D D+ REKD++K REK E+ R DRD+ RE+ RD+E ++ RE+ +
Sbjct: 857 DRDKVREKDRDKVREKDRDKLREKDR------EKIRERDRDKGREKDRDKEQVKTREKDQ 910
Query: 187 DREVIERERSRDREVI---------ERERSRDRELKEREKERESRDNDKESRRPKEKKEQ 237
++E + ++R ++RE + ++E+ R++EL E ++ E R R +E +
Sbjct: 911 EKERL-KDRDKEREKVRDKGRDRDRDQEKKRNKELTEDKQAPEQRSRPNSPRVKQEPRNG 969
Query: 238 VEPEVDPER 246
E ++ PER
Sbjct: 970 EESKIKPER 978
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 125/213 (58%), Gaps = 29/213 (13%)
Query: 48 EKVEDYDDDGHRSRGS---KSRDESRNHDRRKERDSSCHRSWSRDGGRDRPRSS--WEHR 102
E+V+D + D + R K R + R DR KE++ R + GRD+ RS + R
Sbjct: 709 ERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKV--RDKEQVKGRDKKRSKDLEKCR 766
Query: 103 DRDTERDRDRDREERN------GRDRNRD----RGRDRDR-----RERDHDTDRDREKDK 147
++D +++ ++DRE+ GR++++D +GR++DR + R+ D D++ EK +
Sbjct: 767 EKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGR 826
Query: 148 EKEREKSHRSGSQSERYRSDRDERERSRDRE---VIERERSRDREVI-ERERSRDREVI- 202
EK+++K G + +R + +R++ RD++ V E++R + RE ++ R +DRE I
Sbjct: 827 EKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIR 886
Query: 203 ERERSRDRELKEREKER-ESRDNDKESRRPKEK 234
ER+R + RE K+R+KE+ ++R+ D+E R K++
Sbjct: 887 ERDRDKGRE-KDRDKEQVKTREKDQEKERLKDR 918
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 22/205 (10%)
Query: 45 KSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSSCHRSWSRDGGRDRPRSSWEHRDR 104
K EK + D D +G + +D+ + ++ +E+D R RD RD+ R +DR
Sbjct: 808 KEMEKAREKDQDKELEKG-REKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDR 866
Query: 105 DTERDRDRD----REERNGRDRNRDRGRDRDR-----RERDHDTDRDREKDKEKEREKSH 155
D R++DRD ++ R+R+RD+GR++DR + R+ D +++R KD++KEREK
Sbjct: 867 DKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKEREKVR 926
Query: 156 RSGSQSERYRSDRDERERSRDREVIE-RERSRDREVIERERSRDREVIERERSRDRELKE 214
G +R + + +E + D++ E R R V + R+ + I+ ERS +
Sbjct: 927 DKGRDRDRDQEKKRNKELTEDKQAPEQRSRPNSPRVKQEPRNGEESKIKPERSVHKN--- 983
Query: 215 REKERESRDNDKESRRPKEKKEQVE 239
N+K+ +R E K Q++
Sbjct: 984 --------SNNKDEKRGGENKNQLD 1000
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 309
+F + AD + E F RAG V V +I D+ + RS+G G+V V A
Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 310 SGQPLLGQPVMVK---PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTE 366
+G L G+ + V P E +N S G S + R+YVGNL + + +
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS-------FDSSNRVYVGNLAWGVDQ 201
Query: 367 DQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425
D L +F G V ++ D ++G +GFGFV ++ E+ NA+ +++ GRAI+V
Sbjct: 202 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
Query: 426 S 426
S
Sbjct: 262 S 262
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 412
+++VGNL F+ L ++FE G VE+V++ D+ TG +GFGFV + E+ A
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 413 NGQLEIVGRAIKVSA 427
E+ GRA++V++
Sbjct: 148 FNGYELDGRALRVNS 162
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 309
V+ + D+ + FS GKV D +++ DR+S RS+G G+V + V AI +L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 310 SGQPLLGQPVMVKPSEA 326
G L G+ + V P+EA
Sbjct: 250 DGVDLNGRAIRVSPAEA 266
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ERD RT+F + + E ++ F A +VRL++++ SKG+ Y+EF
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEGS-SKGMAYIEFKTEAEAE 422
Query: 305 MAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM 364
A+ + MV EK+ +S GGG ++ L V NL +
Sbjct: 423 KALEEKQGTEVDGRAMVIDYTGEKSQQESQK------GGG----ERESKTLIVNNLSYAA 472
Query: 365 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424
+E+ L+++F+ +++P + G KG+ FV+F EDA+ ALN EI GRAI+
Sbjct: 473 SEETLQELFK---KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIR 529
Query: 425 V 425
+
Sbjct: 530 L 530
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 304
ER+ +T+ + A E + E F +A ++ + N R KG +VEF
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 305 MAI-ALSGQPLLGQPVMVK---PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNL 360
A+ + + + G+ + ++ PS + N+ A GG ++ ++ L+V L
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQKGNM--------NARGG----FNQQSKTLFVRGL 560
Query: 361 HFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
+ TE+ LR+ FE G++ + +TG KGFGFV F+ EDA+ A
Sbjct: 561 SEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 88/159 (55%), Gaps = 14/159 (8%)
Query: 273 GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLV 331
G V+ ++++DR + RSKG G+V F D A+ ++GQ +P+ + P+ A KN +
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA-ANKNAL 237
Query: 332 QSNSSIA----GASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 387
++ GA+ G P + ++VG L N+T+D+L+ +F FG + V++P
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNN---TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPG 294
Query: 388 ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426
+ C GFVQ+A A +AL++ ++ G++I++S
Sbjct: 295 K--RC---GFVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 261 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVM 320
DE + F+++G+ ++I ++ + +S+G G++EF ++ S + Q
Sbjct: 72 DENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF---------VSHSVAERVLQTYN 122
Query: 321 VKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFE-PFGTV 379
P + + + N + AGA G G ++VG+L +T+ L F+ +G+V
Sbjct: 123 GAPMPSTEQTFRLNWAQAGA-GEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 380 ELVQLPLD-ETGHCKGFGFVQFA-RLEDARNALNLNGQ 415
+ ++ LD TG KG+GFV+FA E R +NGQ
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 309
+F + AD + E F RAG V V +I D+ + RS+G G+V V A
Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 310 SGQPLLGQPVMVK----PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMT 365
+G L G+ + V P + E + + NSS G S GG + R+YVGNL + +
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGS--FDSSNRVYVGNLAWGVD 206
Query: 366 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424
+D L +F G V ++ D ++G +GFGFV ++ E+ NA+ +++ GRAI+
Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266
Query: 425 VS 426
VS
Sbjct: 267 VS 268
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 412
+++VGNL F+ L ++FE G VE+V++ D+ TG +GFGFV + E+ A
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 413 NGQLEIVGRAIKVSA 427
E+ GRA++V++
Sbjct: 148 FNGYELDGRALRVNS 162
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 309
V+ + D+ + FS GKV D +++ DR+S RS+G G+V + V AI +L
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255
Query: 310 SGQPLLGQPVMVKPSEA 326
G L G+ + V P+EA
Sbjct: 256 DGVDLNGRAIRVSPAEA 272
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL 410
G++ L+VGNL +N+ ++Q++Q F+ G V ++ E G+ +GFG V+FA E A+ AL
Sbjct: 447 GSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKAL 506
Query: 411 NLNGQLEIVGRAIKV 425
L G +++GR +++
Sbjct: 507 ELAGH-DLMGRPVRL 520
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRL--IMDRNSRRSKGVGYVEFYDVMSVPMA 306
+T+F + ++ V +FF AG+V D+R D N R G G+VEF + A
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFR---GFGHVEFATAEAAKKA 505
Query: 307 IALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTG--------PYSGGARRLYVG 358
+ L+G L+G+PV + +L + GA G+G P +++
Sbjct: 506 LELAGHDLMGRPVRL-------DLARER----GAYTPGSGRDNSSFKKPAQSSGNTIFIK 554
Query: 359 NLHFNMTEDQLRQVFEP-FGT---VELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN 413
++ Q+R E FG+ + V +P D ETG KG ++ FA A LN
Sbjct: 555 GFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELN 614
Query: 414 G 414
G
Sbjct: 615 G 615
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRL-IMDRNSRRSKGVGYVEFYDVMSVPMAI 307
+T+FA + + D+ FF AG+V DVRL D S KG G++EF A+
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS--FKGYGHIEFASPEEAQKAL 441
Query: 308 ALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTED 367
++G+ LLG+ V + + SN G G G+ +R +YV ++ ED
Sbjct: 442 EMNGKLLLGRDVRLDLANERGTPRNSN---PGRKGEGS-----QSRTIYVRGFSSSLGED 493
Query: 368 ----QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 422
+LR F G V V +P D ETG +GF ++ D AL L+G EI G
Sbjct: 494 EIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQLSGS-EIGGGN 550
Query: 423 IKV 425
I V
Sbjct: 551 IHV 553
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409
GG++ L+ GNL + + + F+ G V V+L + G KG+G ++FA E+A+ A
Sbjct: 381 GGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKA 440
Query: 410 LNLNGQLEIVGRAIKV 425
L +NG+L ++GR +++
Sbjct: 441 LEMNGKL-LLGRDVRL 455
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 412
+L+VGNL FN+ QL Q+FE G VE+V++ D+ TG +GFGFV + + + A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 413 NGQLEIVGRAIKVSA 427
E+ GR ++V+A
Sbjct: 152 FNGYELDGRPLRVNA 166
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 15/201 (7%)
Query: 241 EVDPERDQR-----TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYV 295
+V P ++Q +F + D + + F AG V V +I D+ + RS+G G+V
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 296 EFYDVMSVPMAIA-LSGQPLLGQPVMVK----PSEAEKNLVQS----NSSIAGASGGGTG 346
V V A +G L G+P+ V P + E + S GGG G
Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGG 197
Query: 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405
+G R+YVGNL + + + L +F G V ++ D ++G KGFGFV + ++
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257
Query: 406 ARNALNLNGQLEIVGRAIKVS 426
+NA+ ++ GR I+VS
Sbjct: 258 VQNAIKSLDGADLDGRQIRVS 278
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 309
V+ + D+ + FS GKV + R+I DR+S RSKG G+V + V AI +L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 310 SGQPLLGQPVMVKPSEA 326
G L G+ + V +EA
Sbjct: 266 DGADLDGRQIRVSEAEA 282
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 124/334 (37%), Gaps = 55/334 (16%)
Query: 331 VQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVF-EPFGTVELVQLPLDET 389
VQS + G S + +RRLYVGN+ F E+ + F + L Q P +
Sbjct: 159 VQSAVPVVGPS------VTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPI 212
Query: 390 GHC-----KGFGFVQFARLEDARNALNLNGQLEIVGRAIKV------------------- 425
C K F F++F +++ + +G + +G+ +KV
Sbjct: 213 LLCQINLDKNFAFIEFRSIDETTAGMAFDG-INFMGQQLKVRRPRDYQPSQNTFDMNARM 271
Query: 426 ---SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 482
S V D + +G +D+ L + +D G++ G A
Sbjct: 272 PVSSIVVDSANKIFIGG-LPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSK---GYAFA 327
Query: 483 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGV 542
++ T A L G LV L H L + A + + G
Sbjct: 328 EYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHLPNSASA-IAGIDLSQGAGR 386
Query: 543 PSECLLLKNMFDP----KNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-------DSA 591
+E L L NM +E YEE I EDV ECSK+G ++ + + +
Sbjct: 387 ATEILCLMNMVTEDELRSDEDYEE----ILEDVREECSKYGIVRSLEIPRPYDDHPVPGV 442
Query: 592 GFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 625
G V++ F T AQ AL GR FA + + ++
Sbjct: 443 GKVFVEFATTSDCQRAQAALTGRKFANRTVVTSY 476
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 27/180 (15%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V FFS+ +++ K +VE
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 344
V A++L G G PV V+ PS+ +L + + GASGG
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL 355
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403
GP R++VG L + TE Q+R++ E FG ++ L D ETG+ KG+ F + L
Sbjct: 356 EGP-----DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 14/81 (17%)
Query: 89 DGGRD---------RPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRDRRERDHDT 139
+GGRD +P+ +R+T R +DR+RE+ GRD++R+R + RR RD D
Sbjct: 22 NGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREK--GRDKDRERDSEVSRRSRDRDG 79
Query: 140 DRDREKDKEKE---REKSHRS 157
++ +E+ ++K+ RE+ HRS
Sbjct: 80 EKSKERSRDKDRDHRERHHRS 100
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 11/82 (13%)
Query: 63 SKSRDESRNHDRRKERDSSCHRSWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDR 122
SK + ESR+H+R R R RD +DR R S R R RDRD E + +
Sbjct: 35 SKPKRESRDHERETSRSKDREREKGRD--KDRERDSEVSR-----RSRDRDGE----KSK 83
Query: 123 NRDRGRDRDRRERDHDTDRDRE 144
R R +DRD RER H + R R+
Sbjct: 84 ERSRDKDRDHRERHHRSSRHRD 105
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 566 DIKEDVEGECSKFGKLKHIFVEKDSA--------GFVYLRFENTQSAFAAQRALHGRWFA 617
DI ED+ E KFG L ++ + + S G V+L++ +T + A+ ++GR F
Sbjct: 493 DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFG 552
Query: 618 GKMITATFMVPQTYE 632
G + A + +E
Sbjct: 553 GNEVVAVYYPEDKFE 567
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 74/176 (42%), Gaps = 25/176 (14%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V FFS+ +++ K +VE
Sbjct: 252 RHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 311
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSNSSIAGASGGGT 345
V A+AL G L G PV V+ PS+ NL N G S G T
Sbjct: 312 VEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNL---NLGAVGLSSGST 368
Query: 346 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 400
G G R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F +
Sbjct: 369 GGLEG-PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 128/331 (38%), Gaps = 65/331 (19%)
Query: 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTV----------ELVQLPLDETGHCKGFGFVQFA 401
ARR+YVG L E + F + +V + ++ H K F FV+
Sbjct: 254 ARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYIN---HEKKFAFVEMR 310
Query: 402 RLEDARNALNLNGQLEIVGRAIKVSAVTDQS------------------GLQDLGANTTG 443
+E+A NA+ L+G + + G +KV TD + G L + +TG
Sbjct: 311 SVEEASNAMALDGII-LEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 444 DFDDDE---GGGLSL---NARSRALL----------MQKLDRSGSATTIAGSAVT-PAVN 486
+ + GGL + R LL + K +G++ A P+V
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 487 STALPLPTAPLLGAASAVSTL-VPPLVQGTVPTHPGQ---LGTALQVPTASVPIFDTIGV 542
A A L G TL V +QG + P Q L A Q +F G
Sbjct: 430 DIA----CAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGT 485
Query: 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDS--------AGFV 594
P++ + L + + +E +I ED+ E KFG L ++ + + + G V
Sbjct: 486 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV 545
Query: 595 YLRFENTQSAFAAQRALHGRWFAGKMITATF 625
+L + + + A+ ++GR F G + A +
Sbjct: 546 FLEYADVDGSSKARSGMNGRKFGGNQVVAVY 576
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSR------AGKVRDVRLIMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V FFS +++ K +VE
Sbjct: 218 RHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 277
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 344
V A+AL G G PV V+ PS+ NL + + S G+SGG
Sbjct: 278 VEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGL 337
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 400
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F +
Sbjct: 338 EGP-----DRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVY 389
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 566 DIKEDVEGECSKFGKLKHIFVEKDSA--------GFVYLRFENTQSAFAAQRALHGRWFA 617
DI ED+ EC KFG L ++ + + + G V+L + + + A++ L+GR F
Sbjct: 475 DILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFG 534
Query: 618 GKMITATF 625
G + A F
Sbjct: 535 GNQVVAVF 542
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 25/176 (14%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRA-----GKVRDV-RLIMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V FF++ G + +++ K +VE
Sbjct: 269 RHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRS 328
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSNSSIAGASGGGT 345
V A+AL G G PV V+ PS+ NL + + +GGG
Sbjct: 329 VEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGL 388
Query: 346 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 400
G R++VG L + TE Q+R++ E FG + + D ETG+ KG+ F +
Sbjct: 389 E----GPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLY 440
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 33/210 (15%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V +F++ +++ K +VE
Sbjct: 204 RHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRS 263
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 344
V A+AL G G PV V+ PS+ NL + + G++GG
Sbjct: 264 VEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGL 323
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F + L
Sbjct: 324 EGP-----DRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 378
Query: 404 E------DARNALNLNGQLEIVGRAIKVSA 427
A N + + + V RA + SA
Sbjct: 379 NVTDIACAALNGIKMGDKTLTVRRANQGSA 408
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 536 IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK------- 588
++ +P++ + L + +E DI ED+ E K+G L + + +
Sbjct: 431 VYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEP 490
Query: 589 -DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 625
G V+L + + + A+ A+HGR F G + A F
Sbjct: 491 VSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 528
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 27/177 (15%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V FFS +++ K +VE
Sbjct: 236 RHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRS 295
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSNSSIA-GASGGG 344
V A+AL G G P V+ PS+ NL + ++ G++GG
Sbjct: 296 VEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGL 355
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 400
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F +
Sbjct: 356 EGP-----DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 407
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 566 DIKEDVEGECSKFGKLKHIFVEKDS--------AGFVYLRFENTQSAFAAQRALHGRWFA 617
DI ED+ EC KFG L ++ + + S G V+L + + S+ A+++L+GR F
Sbjct: 493 DILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFG 552
Query: 618 GKMITATF 625
G + A F
Sbjct: 553 GNQVVAVF 560
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 24/184 (13%)
Query: 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 309
V+ ++ +A ERDV FF GK+ +V L G G+VEF D+ A+ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55
Query: 310 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGG--------TGPYSGGARRLYVGNLH 361
+G+ L G+ V+V+ + + + S +G SG G GP + RL V NL
Sbjct: 56 NGKDLCGERVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 362 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 421
+ L+ G V D K G ++F D + AL E+ GR
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYA----DAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGR 168
Query: 422 AIKV 425
I++
Sbjct: 169 KIRL 172
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 13/197 (6%)
Query: 222 RDNDKESRRPKEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLI 281
+DN S KE+K E+ R V + + + + + F G V +
Sbjct: 234 QDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVE 293
Query: 282 MDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKN--------LVQ 332
+D + S G G V FYD+ + AI +G + G + VK E+ N +
Sbjct: 294 LDGDGV-STGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPM 352
Query: 333 SNSSIAGASGGGTGPYSGGARR---LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDET 389
+S + + T GG R +Y NL F+ + L +FE G V +L D
Sbjct: 353 DDSPVNEEARKFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSK 412
Query: 390 GHCKGFGFVQFARLEDA 406
G G V++ ++DA
Sbjct: 413 GAPTGIAVVEYDNVDDA 429
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 30/191 (15%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E V +F++ +++ K +VE
Sbjct: 235 RHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRS 294
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 344
V A+AL G G PV V+ PS+ NL + + G++GG
Sbjct: 295 VEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGL 354
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F + L
Sbjct: 355 EGP-----DRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 409
Query: 404 ---EDARNALN 411
+ A ALN
Sbjct: 410 NVTDIACAALN 420
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 542 VPSECLLLKNMFDPK----NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-------- 589
+P++ + L + P +E YE DI +D+ E ++G L + + +
Sbjct: 470 LPTKVVCLTQVVSPDELRDDEEYE----DIVQDMREEGCRYGNLVKVVIPRPDPSGAPVA 525
Query: 590 SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 625
G V+L F + +S+ A+ +HGR FA + A F
Sbjct: 526 GVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVF 561
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 299
R R V+ + A+E+ V +F++ +++ K +VE
Sbjct: 211 RHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRS 270
Query: 300 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 344
V A+AL G G PV V+ PS+ NL + + G++GG
Sbjct: 271 VEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGL 330
Query: 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F + L
Sbjct: 331 EGP-----DRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 385
Query: 404 ---EDARNALN 411
+ A ALN
Sbjct: 386 NVTDIACAALN 396
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 561 EEFDMDIKEDVEGECSKFGKLKHIFVEK-DSAGF-------VYLRFENTQSAFAAQRALH 612
EE++ DI ED+ E K+G L + + + D +G V+L + + A A+ A+H
Sbjct: 464 EEYE-DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMH 522
Query: 613 GRWFAGKMITATF 625
GR F G + A F
Sbjct: 523 GRKFGGNPVVAVF 535
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 353 RRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 411
R +YVGNL+ T DQL + F+ G V+ V++ DET + F FV+FA AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTR-FAFVEFADQNSVPRALA 127
Query: 412 LNGQL 416
NG +
Sbjct: 128 FNGVM 132
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 242 VDPERD---QRTVFAYQICLKADERD-VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 297
VDP + +RTV+ + + D + EFF + G+V+ VR+ D + +VEF
Sbjct: 59 VDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEF 116
Query: 298 YDVMSVPMAIALSGQPLLGQPV--------MVKPSE 325
D SVP A+A +G +P+ +VKP E
Sbjct: 117 ADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPE 152
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 353 RRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 411
R +YVGNL+ T DQL + F+ G V+ V++ DET + F FV+FA AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTR-FAFVEFADQNSVPRALA 127
Query: 412 LNGQL 416
NG +
Sbjct: 128 FNGVM 132
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 242 VDPERD---QRTVFAYQICLKADERD-VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 297
VDP + +RTV+ + + D + EFF + G+V+ VR+ D + +VEF
Sbjct: 59 VDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEF 116
Query: 298 YDVMSVPMAIALSGQPLLGQPV--------MVKPSE 325
D SVP A+A +G +P+ +VKP E
Sbjct: 117 ADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPE 152
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 353 RRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 411
R +YVGNL+ T DQL + F+ G V+ V++ DET + F FV+FA AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTR-FAFVEFADQNSVPRALA 124
Query: 412 LNGQL 416
NG +
Sbjct: 125 FNGVM 129
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 242 VDPERD---QRTVFAYQICLKADERD-VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 297
VDP + +RTV+ + + D + EFF + G+V+ VR+ D + +VEF
Sbjct: 56 VDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEF 113
Query: 298 YDVMSVPMAIALSGQPLLGQPV--------MVKPSE 325
D SVP A+A +G +P+ +VKP E
Sbjct: 114 ADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPE 149
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 85 SWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRDR 132
+WSR+ DRPR HRD+D+ RD DR+RE R NRDR R+ DR
Sbjct: 2122 NWSRERDWDRPREWDRHRDKDSSRDWDRNRE----RSANRDREREADR 2165
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 355 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 413
L+V L++ +E ++++ FE +G ++ V L D+ T KG+ F+++ D + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 414 GQLEIVGRAIKV 425
+I GR + V
Sbjct: 200 DGQKIDGRRVLV 211
>sp|Q5NCR9|NSRP1_MOUSE Nuclear speckle splicing regulatory protein 1 OS=Mus musculus
GN=Nsrp1 PE=1 SV=1
Length = 542
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 33/159 (20%)
Query: 58 HRSRGSKSRDESRNHDRRKERDS-SCHRSWS----RDGGRDRPRSSWEHRDRDTERD--- 109
H SRGS+SR H R+ RD SCH+ S + R R S +H + E++
Sbjct: 301 HHSRGSQSR--GHEHQDRQSRDQESCHKDRSHREEKSSHRHREASHKDHYWKKHEQEDKL 358
Query: 110 RDRDREERNGRDRNRD----RGRDRDRRERDHD-----------------TDRDREKD-- 146
+ R++EER R+ R+ R ++RDR+ DHD R+R +D
Sbjct: 359 KGREQEERQDREGKREKYSSREQERDRQRNDHDRYSEKEKKRKEKEEHTKARRERCEDSG 418
Query: 147 KEKEREKSHRSGSQSERYRSDRDERERSRDREVIERERS 185
K +EREK G SER+R R+ RSR ++ +++ERS
Sbjct: 419 KHREREKPEGHGQSSERHRDRRESSPRSRPKDDLDQERS 457
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL 410
R L++GNL ++T +LR FE FG E++++ + + G + F Q++ + A+
Sbjct: 656 RTLFIGNLEKDITAGELRSHFEAFG--EIIEIDIKKQG-LNAYAFCQYSDIVSVVKAM 710
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 55/89 (61%), Gaps = 13/89 (14%)
Query: 142 DREKDKEKEREKSHRSGSQSERYRSDRDERERS-RDREVIERERSRDREVIERERSRDRE 200
D+E+ +++ REK R E+ + +RD RE+ RD+++ E+E R++E E+E R+++
Sbjct: 1997 DKEQKEKEIREKDLR-----EKEQRERDNREKELRDKDLREKEM-REKEQREKELHREKD 2050
Query: 201 VIERERSRDRELKEREKERESRDNDKESR 229
R+RE +E+E+ R + D ++E R
Sbjct: 2051 ------QREREHREKEQSRRAMDVEQEGR 2073
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 72/126 (57%), Gaps = 25/126 (19%)
Query: 110 RDRDREERNGRDRNRDRGR---------DRDRRERDHDTDRDREKDKEKEREKSHRSGSQ 160
R +D+E R GR+ +RDR R++++ D D++ ++D + R + RS
Sbjct: 144 RSQDKENREGREHHRDREERKGIKESSGSREQKDPDQPKDQESKRDDKDRRRDAERSDKG 203
Query: 161 SERYRS-DRD-ERERSRDRE---VIERERSRDREVIERERSRDREVIERERSRDRELKER 215
ER R+ DRD ++++SRDRE E+ER ERE+ R+RE ERER +DR+ K
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKER-------EREKDRNREK-ERERDKDRDKK-- 253
Query: 216 EKERES 221
KERES
Sbjct: 254 -KERES 258
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 91/176 (51%), Gaps = 31/176 (17%)
Query: 59 RSRGSKSRDESRN-----HDRRKER-DSSCHRSWSRDGGRDRPR---SSWEHRDRDTERD 109
R+R + S D RN +DR ++R +SS R +R+ D+ R ++ H DR +RD
Sbjct: 1143 RNRENSSYDRERNRGNSSYDRERKRGNSSYDRERNRESSYDKERKNRNAVAH-DRQRKRD 1201
Query: 110 RDRD------------REERNGRDRNRDRGRDRDRRERDHDTDRDREKDKEKEREKSHRS 157
R R RE+R R+ R DR R+ +DR D+ E+S R
Sbjct: 1202 RSRSYERPTIRENSAPREKRMESSRSEKDSRRGDRSSRNERSDRGERSDRG---ERSDR- 1257
Query: 158 GSQSER-YRSDRDERERSRDREVIERERSRDREVIERERSRDREVI-ERERSRDRE 211
G +S+R RSDR ER +R E+ERSR + ERER RDR++ +RER R+R+
Sbjct: 1258 GERSDRGERSDRGERSDRGERSDREKERSRAK---ERERDRDRDLKGQRERKRERD 1310
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 49 KVEDYDDDGHRSRGSKSRDESRNHDRRKERDSSCHRSWSRDGGRD-RPRSSWEHRDRDTE 107
K ++ D+ + S+++ E + KER SS + D +PR +++ E
Sbjct: 145 KAQEPDNKSVKEEESRTQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKE 204
Query: 108 RDRDRDREERNGRDRNRDRGRDRDRRERDHDTDRDRE-------------------KDKE 148
DRDR RE RDRNRD R++ R D DR+ + K+KE
Sbjct: 205 ADRDRHREP--DRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKE 262
Query: 149 KEREKSHRSGSQSERYRSDRDERERSRDRE 178
+++++ G ER +S E R DRE
Sbjct: 263 RQKDRDRDKGKDRERRKSKNGEHTRDPDRE 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,595,668
Number of Sequences: 539616
Number of extensions: 12066908
Number of successful extensions: 163002
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2311
Number of HSP's successfully gapped in prelim test: 2776
Number of HSP's that attempted gapping in prelim test: 59582
Number of HSP's gapped (non-prelim): 35066
length of query: 639
length of database: 191,569,459
effective HSP length: 124
effective length of query: 515
effective length of database: 124,657,075
effective search space: 64198393625
effective search space used: 64198393625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)