Query 006608
Match_columns 639
No_of_seqs 400 out of 3194
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 11:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0147 Transcriptional coacti 100.0 3.2E-54 6.9E-59 433.7 30.1 369 238-639 169-538 (549)
2 TIGR01622 SF-CC1 splicing fact 100.0 7.6E-53 1.7E-57 456.7 41.0 371 243-637 84-456 (457)
3 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-49 2.9E-54 437.5 37.3 306 244-634 171-507 (509)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.9E-42 1.7E-46 358.2 32.2 336 248-631 3-351 (352)
5 TIGR01645 half-pint poly-U bin 100.0 4.4E-41 9.6E-46 358.4 36.3 178 247-432 106-285 (612)
6 KOG0145 RNA-binding protein EL 100.0 7.1E-37 1.5E-41 278.8 23.2 310 247-629 40-358 (360)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.8E-36 1.3E-40 323.3 34.7 341 247-629 1-351 (481)
8 KOG0117 Heterogeneous nuclear 100.0 1.3E-36 2.8E-41 297.9 24.1 251 246-636 81-338 (506)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 4.5E-36 9.7E-41 320.1 28.4 242 247-629 57-307 (578)
10 TIGR01628 PABP-1234 polyadenyl 100.0 9E-36 1.9E-40 330.5 27.8 251 250-629 2-261 (562)
11 TIGR01628 PABP-1234 polyadenyl 100.0 4.4E-35 9.6E-40 325.0 26.1 269 248-630 88-365 (562)
12 KOG0127 Nucleolar protein fibr 100.0 5.9E-34 1.3E-38 285.1 28.2 353 249-630 6-379 (678)
13 KOG0120 Splicing factor U2AF, 100.0 2.2E-34 4.8E-39 295.7 22.0 304 244-636 171-499 (500)
14 KOG0124 Polypyrimidine tract-b 100.0 1.8E-33 4E-38 268.0 21.5 369 248-633 113-539 (544)
15 KOG0144 RNA-binding protein CU 100.0 6.5E-33 1.4E-37 270.5 25.6 172 244-433 30-208 (510)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3E-32 6.4E-37 294.5 32.4 292 249-628 97-479 (481)
17 KOG0148 Apoptosis-promoting RN 100.0 5.3E-33 1.2E-37 255.6 19.0 234 246-629 4-238 (321)
18 KOG0123 Polyadenylate-binding 100.0 2.6E-30 5.7E-35 264.5 19.1 337 250-633 3-353 (369)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.2E-28 2E-32 264.3 28.6 186 349-628 172-374 (509)
20 TIGR01659 sex-lethal sex-letha 100.0 2.4E-28 5.2E-33 249.1 19.3 168 246-432 105-276 (346)
21 TIGR01622 SF-CC1 splicing fact 99.9 3.2E-26 6.8E-31 248.5 25.0 171 352-628 89-265 (457)
22 KOG0148 Apoptosis-promoting RN 99.9 2.5E-26 5.3E-31 211.8 18.3 178 248-433 62-240 (321)
23 TIGR01659 sex-lethal sex-letha 99.9 5.7E-26 1.2E-30 231.7 21.1 165 349-630 104-276 (346)
24 KOG0147 Transcriptional coacti 99.9 1.6E-26 3.5E-31 233.9 15.3 182 247-432 277-529 (549)
25 KOG4212 RNA-binding protein hn 99.9 1.7E-24 3.7E-29 211.5 27.7 189 238-427 34-290 (608)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.4E-25 7.4E-30 232.3 20.9 186 247-432 88-350 (352)
27 KOG0110 RNA-binding protein (R 99.9 3.5E-25 7.6E-30 230.1 19.7 273 245-631 382-695 (725)
28 TIGR01645 half-pint poly-U bin 99.9 1.8E-24 4E-29 231.4 21.0 175 351-631 106-286 (612)
29 KOG0127 Nucleolar protein fibr 99.9 1.6E-24 3.4E-29 217.8 14.6 184 248-432 117-379 (678)
30 KOG0131 Splicing factor 3b, su 99.9 6.2E-24 1.3E-28 185.1 10.1 168 247-432 8-178 (203)
31 KOG0145 RNA-binding protein EL 99.9 4.2E-23 9.1E-28 189.0 14.8 186 246-431 125-358 (360)
32 KOG1190 Polypyrimidine tract-b 99.9 4E-22 8.6E-27 194.0 19.9 321 246-629 26-373 (492)
33 KOG0117 Heterogeneous nuclear 99.9 9E-22 2E-26 193.9 19.9 170 245-435 161-335 (506)
34 TIGR01648 hnRNP-R-Q heterogene 99.9 4E-22 8.6E-27 213.5 18.9 165 247-432 137-308 (578)
35 KOG0144 RNA-binding protein CU 99.9 1.6E-22 3.5E-27 198.1 12.9 166 350-631 32-208 (510)
36 KOG0131 Splicing factor 3b, su 99.9 1E-21 2.3E-26 171.3 12.9 163 352-630 9-178 (203)
37 KOG0109 RNA-binding protein LA 99.9 1.5E-21 3.2E-26 182.2 10.4 149 249-433 3-152 (346)
38 KOG1456 Heterogeneous nuclear 99.8 2.4E-18 5.2E-23 165.7 26.1 324 247-628 30-362 (494)
39 KOG0109 RNA-binding protein LA 99.8 1.9E-20 4.2E-25 174.7 10.8 147 353-628 3-149 (346)
40 KOG1548 Transcription elongati 99.8 3.7E-19 8.1E-24 170.4 19.3 212 350-630 132-353 (382)
41 KOG0146 RNA-binding protein ET 99.8 3.9E-19 8.5E-24 163.7 17.3 271 351-631 18-367 (371)
42 KOG0110 RNA-binding protein (R 99.8 7.8E-20 1.7E-24 190.6 12.2 174 249-432 516-694 (725)
43 KOG4211 Splicing factor hnRNP- 99.8 1.6E-17 3.5E-22 166.7 24.9 172 247-430 9-181 (510)
44 KOG4205 RNA-binding protein mu 99.8 3.2E-19 6.9E-24 176.1 11.9 179 247-439 5-184 (311)
45 KOG1190 Polypyrimidine tract-b 99.8 1.4E-17 3.1E-22 162.5 22.9 288 249-627 151-489 (492)
46 KOG0123 Polyadenylate-binding 99.8 2.2E-18 4.9E-23 176.8 16.4 152 354-633 3-157 (369)
47 KOG0146 RNA-binding protein ET 99.8 1.7E-18 3.8E-23 159.5 12.6 185 247-432 18-366 (371)
48 KOG0124 Polypyrimidine tract-b 99.8 1.1E-17 2.4E-22 160.6 13.7 173 352-630 113-291 (544)
49 KOG4206 Spliceosomal protein s 99.7 3.5E-16 7.7E-21 142.9 16.2 207 351-627 8-220 (221)
50 KOG1456 Heterogeneous nuclear 99.7 1E-14 2.2E-19 141.0 26.0 295 247-630 119-492 (494)
51 KOG0105 Alternative splicing f 99.7 4.1E-16 8.8E-21 136.3 14.2 173 246-427 4-186 (241)
52 KOG1365 RNA-binding protein Fu 99.7 6E-16 1.3E-20 149.8 15.7 297 247-633 59-366 (508)
53 KOG0120 Splicing factor U2AF, 99.7 6.4E-16 1.4E-20 160.0 16.5 185 247-431 288-492 (500)
54 KOG4206 Spliceosomal protein s 99.7 1.3E-15 2.9E-20 139.2 16.2 176 247-429 8-220 (221)
55 KOG1457 RNA binding protein (c 99.6 1E-14 2.2E-19 131.5 16.3 233 352-616 34-273 (284)
56 KOG0105 Alternative splicing f 99.6 4.7E-14 1E-18 123.5 16.6 187 350-631 4-192 (241)
57 KOG1548 Transcription elongati 99.6 4.9E-14 1.1E-18 135.6 17.7 182 248-433 134-354 (382)
58 PLN03134 glycine-rich RNA-bind 99.6 7E-15 1.5E-19 131.3 8.4 83 246-328 32-115 (144)
59 KOG0106 Alternative splicing f 99.6 6.2E-15 1.3E-19 136.6 7.4 162 249-425 2-165 (216)
60 PLN03134 glycine-rich RNA-bind 99.6 4.8E-14 1E-18 125.9 12.8 84 349-432 31-115 (144)
61 KOG4205 RNA-binding protein mu 99.5 4.1E-14 9E-19 140.0 10.4 171 351-634 5-181 (311)
62 KOG4212 RNA-binding protein hn 99.5 1.3E-12 2.8E-17 128.9 19.7 239 350-625 42-290 (608)
63 KOG1457 RNA binding protein (c 99.5 6.1E-13 1.3E-17 120.2 11.4 169 247-418 33-273 (284)
64 KOG0106 Alternative splicing f 99.4 2.3E-13 5E-18 126.2 8.8 167 353-626 2-168 (216)
65 KOG0149 Predicted RNA-binding 99.4 1.1E-13 2.3E-18 126.8 6.4 79 248-326 12-90 (247)
66 PF00076 RRM_1: RNA recognitio 99.4 3.8E-13 8.2E-18 105.2 7.3 69 251-320 1-70 (70)
67 PF00076 RRM_1: RNA recognitio 99.4 9.8E-13 2.1E-17 102.8 9.0 70 355-424 1-70 (70)
68 KOG4211 Splicing factor hnRNP- 99.4 7.9E-12 1.7E-16 126.2 16.5 175 351-635 9-188 (510)
69 COG0724 RNA-binding proteins ( 99.4 1.9E-12 4.1E-17 131.2 12.5 140 248-387 115-260 (306)
70 KOG0126 Predicted RNA-binding 99.4 5.3E-14 1.1E-18 123.0 -0.1 78 246-323 33-111 (219)
71 PLN03120 nucleic acid binding 99.4 1.6E-12 3.4E-17 124.0 8.0 76 248-326 4-79 (260)
72 KOG0121 Nuclear cap-binding pr 99.4 1.6E-12 3.5E-17 107.1 6.9 83 350-432 34-117 (153)
73 KOG1365 RNA-binding protein Fu 99.4 1.2E-11 2.5E-16 120.4 13.8 181 249-430 162-361 (508)
74 PF14259 RRM_6: RNA recognitio 99.3 5E-12 1.1E-16 98.8 9.4 70 355-424 1-70 (70)
75 PF14259 RRM_6: RNA recognitio 99.3 1.8E-12 3.9E-17 101.4 6.7 69 251-320 1-70 (70)
76 KOG0122 Translation initiation 99.3 2.5E-12 5.4E-17 118.3 7.1 81 247-327 188-269 (270)
77 PF13893 RRM_5: RNA recognitio 99.3 7.4E-12 1.6E-16 92.9 8.3 56 571-626 1-56 (56)
78 KOG0125 Ataxin 2-binding prote 99.3 9.8E-12 2.1E-16 119.0 11.1 84 542-635 94-180 (376)
79 KOG4207 Predicted splicing fac 99.3 2.7E-12 5.8E-17 114.7 6.4 81 247-327 12-93 (256)
80 KOG4207 Predicted splicing fac 99.3 8.5E-12 1.8E-16 111.6 9.5 88 346-433 7-95 (256)
81 KOG0121 Nuclear cap-binding pr 99.3 4E-12 8.6E-17 104.9 6.8 80 245-324 33-113 (153)
82 KOG4307 RNA binding protein RB 99.3 7.7E-11 1.7E-15 122.9 17.5 79 244-323 430-510 (944)
83 KOG0130 RNA-binding protein RB 99.3 2.7E-12 5.9E-17 106.7 5.4 88 239-326 63-151 (170)
84 KOG0113 U1 small nuclear ribon 99.3 8.3E-12 1.8E-16 118.0 9.3 93 246-338 99-192 (335)
85 KOG0107 Alternative splicing f 99.3 8.3E-12 1.8E-16 109.0 8.2 76 544-629 10-85 (195)
86 PLN03121 nucleic acid binding 99.3 6.9E-12 1.5E-16 117.5 7.9 77 247-326 4-80 (243)
87 KOG0114 Predicted RNA-binding 99.3 2.9E-11 6.2E-16 96.0 9.9 79 543-631 17-97 (124)
88 KOG0125 Ataxin 2-binding prote 99.3 2.9E-11 6.3E-16 115.8 11.9 84 349-433 93-176 (376)
89 KOG0130 RNA-binding protein RB 99.3 9.3E-12 2E-16 103.5 7.4 83 350-432 70-153 (170)
90 PLN03213 repressor of silencin 99.2 1.6E-11 3.4E-16 123.1 8.4 77 246-326 8-87 (759)
91 KOG0122 Translation initiation 99.2 2.4E-11 5.3E-16 111.8 8.8 82 350-431 187-269 (270)
92 PLN03120 nucleic acid binding 99.2 3.8E-11 8.2E-16 114.6 10.4 78 352-432 4-81 (260)
93 KOG0114 Predicted RNA-binding 99.2 3.4E-11 7.3E-16 95.6 8.1 80 246-328 16-96 (124)
94 KOG0111 Cyclophilin-type pepti 99.2 5.4E-12 1.2E-16 113.7 3.6 85 246-330 8-93 (298)
95 KOG0107 Alternative splicing f 99.2 2.6E-11 5.7E-16 106.0 7.6 78 352-433 10-87 (195)
96 KOG4660 Protein Mei2, essentia 99.2 2.9E-10 6.4E-15 116.9 15.4 174 245-430 72-249 (549)
97 KOG0113 U1 small nuclear ribon 99.2 7.8E-11 1.7E-15 111.5 10.0 82 350-431 99-181 (335)
98 KOG0132 RNA polymerase II C-te 99.2 6E-11 1.3E-15 125.5 10.0 78 244-327 417-495 (894)
99 smart00362 RRM_2 RNA recogniti 99.2 1E-10 2.2E-15 91.4 7.9 71 250-322 1-72 (72)
100 KOG0126 Predicted RNA-binding 99.2 5.1E-12 1.1E-16 110.8 0.4 82 352-433 35-117 (219)
101 smart00362 RRM_2 RNA recogniti 99.2 1.9E-10 4.2E-15 89.8 9.2 72 354-426 1-72 (72)
102 PLN03121 nucleic acid binding 99.1 3.1E-10 6.8E-15 106.5 11.5 79 352-433 5-83 (243)
103 smart00360 RRM RNA recognition 99.1 1.3E-10 2.9E-15 90.4 7.7 70 253-322 1-71 (71)
104 KOG0149 Predicted RNA-binding 99.1 1.1E-10 2.4E-15 107.3 7.1 81 349-430 9-90 (247)
105 KOG0108 mRNA cleavage and poly 99.1 4.6E-11 9.9E-16 123.8 4.8 79 249-327 19-98 (435)
106 KOG0111 Cyclophilin-type pepti 99.1 7.2E-11 1.6E-15 106.5 5.0 84 350-433 8-92 (298)
107 KOG0129 Predicted RNA-binding 99.1 6.9E-10 1.5E-14 113.2 12.5 157 246-412 257-432 (520)
108 PLN03213 repressor of silencin 99.1 2.6E-10 5.6E-15 114.5 9.3 79 351-432 9-89 (759)
109 cd00590 RRM RRM (RNA recogniti 99.1 6.8E-10 1.5E-14 87.1 9.7 74 354-427 1-74 (74)
110 KOG4454 RNA binding protein (R 99.1 5.2E-11 1.1E-15 107.6 3.0 144 246-423 7-155 (267)
111 COG0724 RNA-binding proteins ( 99.1 1.4E-09 2.9E-14 110.2 13.4 79 352-430 115-194 (306)
112 smart00360 RRM RNA recognition 99.1 5.5E-10 1.2E-14 86.8 8.1 70 357-426 1-71 (71)
113 KOG0108 mRNA cleavage and poly 99.1 4.6E-10 9.9E-15 116.5 9.5 80 353-432 19-99 (435)
114 KOG4307 RNA binding protein RB 99.0 4E-09 8.6E-14 110.4 15.2 199 353-631 312-516 (944)
115 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.6E-14 81.0 8.5 56 369-428 1-56 (56)
116 cd00590 RRM RRM (RNA recogniti 99.0 1.1E-09 2.5E-14 85.9 8.3 72 250-322 1-73 (74)
117 KOG0128 RNA-binding protein SA 99.0 4.3E-11 9.4E-16 128.3 -1.4 238 248-628 571-814 (881)
118 smart00361 RRM_1 RNA recogniti 98.9 2.4E-09 5.2E-14 83.3 6.8 60 262-321 2-69 (70)
119 smart00361 RRM_1 RNA recogniti 98.9 4.2E-09 9.2E-14 81.9 7.6 60 366-425 2-69 (70)
120 KOG0112 Large RNA-binding prot 98.9 1.1E-09 2.5E-14 118.0 5.7 161 246-433 370-533 (975)
121 KOG4210 Nuclear localization s 98.9 3.4E-09 7.4E-14 105.2 7.7 178 246-433 86-266 (285)
122 KOG0132 RNA polymerase II C-te 98.9 1.4E-08 3E-13 108.0 11.7 76 352-432 421-496 (894)
123 KOG0128 RNA-binding protein SA 98.9 3.9E-10 8.4E-15 121.1 -0.2 150 246-430 665-814 (881)
124 KOG4676 Splicing factor, argin 98.8 4.6E-09 9.9E-14 103.0 6.0 211 353-628 8-225 (479)
125 KOG0415 Predicted peptidyl pro 98.8 8E-09 1.7E-13 100.0 6.5 87 347-433 234-321 (479)
126 KOG1996 mRNA splicing factor [ 98.8 8.8E-09 1.9E-13 97.2 5.6 88 541-633 278-371 (378)
127 KOG4208 Nucleolar RNA-binding 98.7 5.1E-08 1.1E-12 88.3 8.0 83 349-431 46-130 (214)
128 KOG0415 Predicted peptidyl pro 98.7 2.5E-08 5.5E-13 96.5 6.5 86 245-330 236-322 (479)
129 KOG0112 Large RNA-binding prot 98.7 1.3E-08 2.7E-13 110.1 4.7 159 350-628 370-530 (975)
130 KOG4208 Nucleolar RNA-binding 98.6 4.7E-08 1E-12 88.5 5.7 79 247-325 48-128 (214)
131 KOG4454 RNA binding protein (R 98.5 4.8E-08 1E-12 88.7 2.9 82 349-431 6-87 (267)
132 KOG0153 Predicted RNA-binding 98.5 1.3E-07 2.9E-12 91.9 5.9 75 246-326 226-302 (377)
133 KOG0129 Predicted RNA-binding 98.5 2.2E-06 4.9E-11 88.0 14.8 179 350-627 257-452 (520)
134 KOG0153 Predicted RNA-binding 98.5 6.1E-07 1.3E-11 87.4 8.7 82 344-430 220-302 (377)
135 KOG0533 RRM motif-containing p 98.5 5.2E-07 1.1E-11 86.2 8.1 83 351-433 82-164 (243)
136 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.4E-07 7.3E-12 94.0 6.9 81 245-325 402-483 (940)
137 KOG2202 U2 snRNP splicing fact 98.4 8.9E-08 1.9E-12 89.7 2.1 70 563-632 77-151 (260)
138 KOG2193 IGF-II mRNA-binding pr 98.4 3.2E-08 6.8E-13 98.0 -1.4 160 353-637 2-165 (584)
139 KOG4676 Splicing factor, argin 98.4 1.8E-07 3.9E-12 92.0 3.7 167 249-419 8-214 (479)
140 KOG4661 Hsp27-ERE-TATA-binding 98.4 1.1E-06 2.3E-11 90.4 9.1 85 349-433 402-487 (940)
141 KOG0226 RNA-binding proteins [ 98.4 3.2E-07 7E-12 85.4 4.4 170 249-432 97-271 (290)
142 KOG4660 Protein Mei2, essentia 98.3 5.8E-07 1.3E-11 93.0 5.6 72 349-424 72-143 (549)
143 KOG0533 RRM motif-containing p 98.3 1.1E-06 2.4E-11 84.0 6.8 77 247-324 82-159 (243)
144 KOG4210 Nuclear localization s 98.3 7.1E-07 1.5E-11 88.8 5.5 175 351-632 87-267 (285)
145 KOG4209 Splicing factor RNPS1, 98.3 5.2E-07 1.1E-11 86.7 4.3 83 243-325 96-178 (231)
146 KOG0116 RasGAP SH3 binding pro 98.3 1.3E-06 2.8E-11 90.5 7.5 80 245-324 285-364 (419)
147 PF11608 Limkain-b1: Limkain b 98.3 5.4E-06 1.2E-10 64.0 8.3 74 545-629 3-77 (90)
148 PF04059 RRM_2: RNA recognitio 98.3 5.4E-06 1.2E-10 67.7 8.4 77 353-429 2-85 (97)
149 PF04059 RRM_2: RNA recognitio 98.2 5.8E-06 1.3E-10 67.5 7.5 77 249-325 2-85 (97)
150 KOG0151 Predicted splicing reg 98.2 1.6E-05 3.5E-10 84.3 12.1 85 348-432 170-258 (877)
151 PF08777 RRM_3: RNA binding mo 98.1 5.8E-06 1.3E-10 69.3 5.7 80 545-635 2-86 (105)
152 KOG0226 RNA-binding proteins [ 98.1 3.7E-06 8E-11 78.5 4.8 161 354-625 98-266 (290)
153 KOG4209 Splicing factor RNPS1, 98.1 6.5E-06 1.4E-10 79.2 6.1 81 350-431 99-180 (231)
154 KOG2193 IGF-II mRNA-binding pr 98.0 7.2E-07 1.6E-11 88.6 -1.3 157 249-434 2-160 (584)
155 KOG0151 Predicted splicing reg 97.9 4.2E-05 9.1E-10 81.3 9.0 81 536-626 166-254 (877)
156 KOG0116 RasGAP SH3 binding pro 97.9 1.9E-05 4.1E-10 82.0 6.0 79 353-432 289-368 (419)
157 KOG4849 mRNA cleavage factor I 97.8 0.0001 2.2E-09 71.9 9.9 78 352-429 80-160 (498)
158 KOG1995 Conserved Zn-finger pr 97.8 2.5E-05 5.4E-10 77.1 4.5 83 246-328 64-155 (351)
159 PF11608 Limkain-b1: Limkain b 97.7 0.00014 3.1E-09 56.3 7.2 70 353-431 3-77 (90)
160 KOG2416 Acinus (induces apopto 97.7 5.2E-05 1.1E-09 79.0 6.3 84 540-634 440-527 (718)
161 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.0002 4.4E-09 58.9 6.2 72 544-627 6-90 (100)
162 KOG1855 Predicted RNA-binding 97.5 9.4E-05 2E-09 74.4 4.8 67 537-613 224-308 (484)
163 PF08777 RRM_3: RNA binding mo 97.5 0.00023 5E-09 59.7 5.7 71 353-428 2-77 (105)
164 PF08952 DUF1866: Domain of un 97.5 0.001 2.3E-08 58.0 9.8 64 565-632 47-110 (146)
165 KOG2314 Translation initiation 97.4 0.00041 8.9E-09 72.1 8.3 83 543-629 57-144 (698)
166 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00038 8.2E-09 50.3 5.2 52 545-608 2-53 (53)
167 KOG1995 Conserved Zn-finger pr 97.4 0.00026 5.6E-09 70.1 5.3 85 349-433 63-156 (351)
168 KOG0115 RNA-binding protein p5 97.2 0.0026 5.6E-08 60.1 9.7 100 303-428 7-111 (275)
169 KOG1996 mRNA splicing factor [ 97.2 0.00086 1.9E-08 64.2 6.5 78 352-429 281-365 (378)
170 KOG2202 U2 snRNP splicing fact 97.1 0.0002 4.3E-09 67.6 1.5 67 367-433 83-150 (260)
171 COG5175 MOT2 Transcriptional r 97.1 0.0012 2.6E-08 64.3 6.7 82 544-629 114-203 (480)
172 KOG4849 mRNA cleavage factor I 97.1 0.00059 1.3E-08 66.7 4.4 77 246-322 78-157 (498)
173 KOG2314 Translation initiation 97.0 0.0014 3E-08 68.3 7.0 80 352-431 58-144 (698)
174 COG5175 MOT2 Transcriptional r 96.9 0.0017 3.7E-08 63.3 6.3 84 350-433 112-205 (480)
175 KOG2416 Acinus (induces apopto 96.9 0.00085 1.8E-08 70.3 4.3 79 348-431 440-522 (718)
176 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0067 1.5E-07 50.0 8.1 77 352-430 6-91 (100)
177 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0019 4E-08 46.7 4.1 52 249-307 2-53 (53)
178 PF15519 RBM39linker: linker b 96.7 0.00092 2E-08 51.6 1.8 26 446-471 4-29 (73)
179 KOG3152 TBP-binding protein, a 96.6 0.0013 2.7E-08 62.1 2.8 71 352-422 74-157 (278)
180 KOG3152 TBP-binding protein, a 96.5 0.0012 2.7E-08 62.2 1.8 73 247-319 73-158 (278)
181 KOG1855 Predicted RNA-binding 96.1 0.0051 1.1E-07 62.3 3.6 67 350-416 229-309 (484)
182 PF08952 DUF1866: Domain of un 96.0 0.024 5.1E-07 49.7 6.9 57 367-431 51-107 (146)
183 PF15023 DUF4523: Protein of u 95.6 0.058 1.3E-06 46.5 7.5 55 569-626 105-159 (166)
184 PF08675 RNA_bind: RNA binding 95.5 0.069 1.5E-06 41.7 7.0 55 353-415 10-64 (87)
185 KOG2135 Proteins containing th 95.4 0.019 4.2E-07 59.0 4.9 59 568-628 387-445 (526)
186 KOG4285 Mitotic phosphoprotein 95.3 0.1 2.2E-06 50.7 8.8 71 544-627 197-268 (350)
187 PF04847 Calcipressin: Calcipr 95.1 0.053 1.1E-06 50.3 6.2 60 568-628 9-70 (184)
188 PF07576 BRAP2: BRCA1-associat 94.4 0.65 1.4E-05 39.2 10.6 77 352-429 13-93 (110)
189 KOG2253 U1 snRNP complex, subu 94.3 0.072 1.6E-06 57.4 5.6 70 542-625 38-107 (668)
190 KOG2253 U1 snRNP complex, subu 93.9 0.0049 1.1E-07 65.9 -3.7 164 234-409 26-192 (668)
191 KOG0115 RNA-binding protein p5 93.8 0.16 3.5E-06 48.3 6.3 70 546-625 33-110 (275)
192 KOG4285 Mitotic phosphoprotein 93.7 0.24 5.2E-06 48.2 7.5 74 354-434 199-273 (350)
193 PF10309 DUF2414: Protein of u 93.6 0.29 6.3E-06 36.3 6.2 54 353-413 6-62 (62)
194 PF10567 Nab6_mRNP_bdg: RNA-re 92.9 3.4 7.4E-05 40.6 13.8 81 352-432 15-109 (309)
195 PF10309 DUF2414: Protein of u 92.6 0.48 1E-05 35.2 5.9 54 545-611 6-62 (62)
196 KOG2318 Uncharacterized conser 92.4 0.51 1.1E-05 50.2 8.2 85 349-433 171-310 (650)
197 KOG0670 U4/U6-associated splic 92.4 0.21 4.6E-06 52.7 5.4 8 370-377 521-528 (752)
198 PF15023 DUF4523: Protein of u 92.2 0.59 1.3E-05 40.5 6.9 73 349-428 83-159 (166)
199 KOG4574 RNA-binding protein (c 92.1 0.45 9.8E-06 52.8 7.6 65 568-633 312-378 (1007)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.29 6.4E-06 45.3 5.5 79 352-430 7-97 (176)
201 KOG2591 c-Mpl binding protein, 92.0 0.29 6.2E-06 51.6 5.7 70 543-624 174-247 (684)
202 PF07576 BRAP2: BRCA1-associat 91.9 1.3 2.8E-05 37.3 8.7 60 568-627 27-93 (110)
203 PF04847 Calcipressin: Calcipr 91.7 0.44 9.6E-06 44.3 6.2 62 364-430 7-70 (184)
204 PF07292 NID: Nmi/IFP 35 domai 91.3 0.12 2.6E-06 41.4 1.8 72 293-374 1-74 (88)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 91.1 0.18 3.9E-06 46.7 3.0 69 247-315 6-81 (176)
206 KOG2591 c-Mpl binding protein, 91.0 0.42 9.2E-06 50.4 5.8 71 351-427 174-248 (684)
207 KOG2135 Proteins containing th 90.9 0.14 3E-06 53.0 2.1 76 245-326 369-445 (526)
208 KOG0804 Cytoplasmic Zn-finger 90.7 0.69 1.5E-05 47.8 6.9 77 352-429 74-154 (493)
209 PF11767 SET_assoc: Histone ly 90.0 1.3 2.7E-05 33.5 6.1 52 568-623 14-65 (66)
210 KOG0804 Cytoplasmic Zn-finger 89.7 1.6 3.4E-05 45.2 8.5 67 248-316 74-142 (493)
211 KOG2068 MOT2 transcription fac 89.1 0.16 3.5E-06 50.5 1.0 82 352-433 77-165 (327)
212 KOG4574 RNA-binding protein (c 89.0 1.6 3.4E-05 48.8 8.3 75 353-432 299-375 (1007)
213 PF10567 Nab6_mRNP_bdg: RNA-re 88.7 5.9 0.00013 39.0 11.1 166 247-414 14-212 (309)
214 PF11767 SET_assoc: Histone ly 88.7 1.6 3.4E-05 33.0 5.8 55 363-425 11-65 (66)
215 PF08675 RNA_bind: RNA binding 88.1 1.9 4E-05 34.0 5.9 51 250-308 10-60 (87)
216 KOG2068 MOT2 transcription fac 86.9 0.31 6.8E-06 48.6 1.4 78 247-324 76-160 (327)
217 PF03880 DbpA: DbpA RNA bindin 85.5 2.8 6.2E-05 32.5 6.0 59 362-428 11-74 (74)
218 KOG2318 Uncharacterized conser 81.8 6 0.00013 42.5 8.1 82 540-630 170-309 (650)
219 PF03880 DbpA: DbpA RNA bindin 79.0 3.2 6.9E-05 32.2 4.0 55 568-626 15-74 (74)
220 COG5470 Uncharacterized conser 76.4 6.5 0.00014 31.7 5.0 51 558-608 12-70 (96)
221 PF14111 DUF4283: Domain of un 72.8 3.6 7.8E-05 37.0 3.3 120 250-387 17-140 (153)
222 KOG4246 Predicted DNA-binding 68.7 3.2 6.9E-05 46.2 2.2 6 547-552 904-909 (1194)
223 KOG4019 Calcineurin-mediated s 67.6 5.4 0.00012 36.3 3.0 75 353-432 11-91 (193)
224 KOG4019 Calcineurin-mediated s 63.9 7.5 0.00016 35.4 3.2 61 568-629 29-90 (193)
225 COG5638 Uncharacterized conser 62.7 28 0.00062 35.7 7.3 39 394-432 259-299 (622)
226 PF15513 DUF4651: Domain of un 60.7 22 0.00047 26.4 4.5 21 566-586 6-26 (62)
227 KOG3869 Uncharacterized conser 56.8 11 0.00024 38.9 3.4 9 260-268 361-369 (450)
228 KOG4410 5-formyltetrahydrofola 56.7 26 0.00057 34.2 5.7 47 352-403 330-377 (396)
229 cd04908 ACT_Bt0572_1 N-termina 54.8 86 0.0019 23.3 7.9 46 568-614 15-62 (66)
230 KOG4483 Uncharacterized conser 52.3 21 0.00045 36.6 4.4 56 351-412 390-446 (528)
231 KOG2295 C2H2 Zn-finger protein 43.6 3.9 8.5E-05 43.5 -2.1 74 350-423 229-303 (648)
232 PF03468 XS: XS domain; Inter 41.8 33 0.00071 29.3 3.5 59 249-310 9-77 (116)
233 COG5638 Uncharacterized conser 39.8 1.1E+02 0.0024 31.6 7.3 37 593-629 260-298 (622)
234 KOG1295 Nonsense-mediated deca 39.8 40 0.00086 34.7 4.3 68 352-419 7-78 (376)
235 PF03439 Spt5-NGN: Early trans 39.4 40 0.00088 26.8 3.5 48 580-631 33-80 (84)
236 PF03468 XS: XS domain; Inter 39.4 28 0.0006 29.8 2.7 57 546-604 10-69 (116)
237 PRK08559 nusG transcription an 39.1 59 0.0013 29.3 5.0 48 568-615 22-70 (153)
238 PF07237 DUF1428: Protein of u 36.3 66 0.0014 26.7 4.3 56 557-612 11-86 (103)
239 PF14268 YoaP: YoaP-like 34.5 24 0.00053 24.2 1.3 39 594-632 3-43 (44)
240 KOG4213 RNA-binding protein La 33.9 38 0.00082 30.9 2.7 71 248-322 111-182 (205)
241 KOG1882 Transcriptional regula 33.8 25 0.00055 33.6 1.7 13 392-404 215-227 (293)
242 PF11823 DUF3343: Protein of u 31.9 61 0.0013 24.9 3.4 25 592-616 2-26 (73)
243 smart00596 PRE_C2HC PRE_C2HC d 29.8 1.1E+02 0.0025 23.2 4.3 60 263-324 2-62 (69)
244 KOG4008 rRNA processing protei 29.4 46 0.00099 31.8 2.6 36 541-586 37-72 (261)
245 PF08156 NOP5NT: NOP5NT (NUC12 28.2 21 0.00045 27.1 0.2 38 569-612 27-65 (67)
246 KOG4410 5-formyltetrahydrofola 28.0 1.6E+02 0.0035 29.0 6.0 51 248-303 330-380 (396)
247 smart00596 PRE_C2HC PRE_C2HC d 27.5 77 0.0017 24.1 3.0 60 367-429 2-63 (69)
248 KOG2891 Surface glycoprotein [ 27.3 55 0.0012 31.8 2.8 52 246-297 147-215 (445)
249 KOG4213 RNA-binding protein La 26.9 82 0.0018 28.8 3.6 56 353-412 112-169 (205)
250 KOG4483 Uncharacterized conser 26.8 94 0.002 32.1 4.4 58 247-311 390-448 (528)
251 KOG2295 C2H2 Zn-finger protein 26.4 20 0.00043 38.5 -0.3 69 247-315 230-299 (648)
252 PF07530 PRE_C2HC: Associated 25.4 1.2E+02 0.0026 23.1 3.8 60 367-429 2-63 (68)
253 KOG4008 rRNA processing protei 25.4 36 0.00079 32.5 1.2 34 352-385 40-73 (261)
254 PF07045 DUF1330: Protein of u 25.0 2.9E+02 0.0063 20.5 6.2 48 561-608 1-56 (65)
255 PF07530 PRE_C2HC: Associated 24.9 1.7E+02 0.0036 22.3 4.6 60 263-324 2-62 (68)
256 KOG2891 Surface glycoprotein [ 23.0 55 0.0012 31.8 2.0 49 568-616 175-247 (445)
257 PF03439 Spt5-NGN: Early trans 22.6 1.9E+02 0.0041 22.9 4.8 35 378-416 33-67 (84)
258 PF08544 GHMP_kinases_C: GHMP 20.8 3.3E+02 0.0071 21.0 5.9 44 568-612 36-80 (85)
259 PF11061 DUF2862: Protein of u 20.3 1.5E+02 0.0033 22.2 3.4 33 568-601 17-52 (64)
No 1
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=3.2e-54 Score=433.71 Aligned_cols=369 Identities=51% Similarity=0.786 Sum_probs=298.6
Q ss_pred CCCCCCcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCc
Q 006608 238 VEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 317 (639)
Q Consensus 238 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~ 317 (639)
..+...+++..++||+-.|+..++..+|.+||+.+|.|.+|.||.|.+++.++|.|||+|.+.+.+..||.|.|..++|.
T Consensus 169 ~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~ 248 (549)
T KOG0147|consen 169 SRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGV 248 (549)
T ss_pred cccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCc
Confidence 34456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEE
Q 006608 318 PVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFG 396 (639)
Q Consensus 318 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~a 396 (639)
+|+|+.....++..+....... ......+...|||+||.+++++++|+.+|++||.|..|.+.++ .+|.++||+
T Consensus 249 pv~vq~sEaeknr~a~~s~a~~-----~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfG 323 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRAANASPALQ-----GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFG 323 (549)
T ss_pred eeEecccHHHHHHHHhcccccc-----ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcc
Confidence 9999998888777433332221 1112233444999999999999999999999999999999999 599999999
Q ss_pred EEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCccc
Q 006608 397 FVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTI 476 (639)
Q Consensus 397 fVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (639)
||+|.+.++|.+|++.|||+.|.|+.|+|....+....... ......++..+.+++++++....++|.++....... .
T Consensus 324 fi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a-~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~-~ 401 (549)
T KOG0147|consen 324 FITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEA-AVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS-L 401 (549)
T ss_pred eEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccc-cccccccchhhccccccccccHHHHHHHHhccCCcc-c
Confidence 99999999999999999999999999999999988877665 335566777788889888877888888887665322 1
Q ss_pred CCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCC
Q 006608 477 AGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 556 (639)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~ 556 (639)
+..+..... .... ...+ ..+.+........|....|.+ ..++.||.|.|||+|.
T Consensus 402 ~s~~~~~l~---~~~~----------~~~~----------~~~~~~~~~~~~~p~~~~p~~---~i~t~C~lL~nMFdps 455 (549)
T KOG0147|consen 402 PSTAISALL---LLAK----------LASA----------AQFNGVVRVRSVDPADASPAF---DIPTQCLLLSNMFDPS 455 (549)
T ss_pred cchhhhHHH---hccc----------cchH----------HhhcCCcCccccCcccccccc---CCccHHHHHhhcCCcc
Confidence 110000000 0000 0000 000000001111111112222 2789999999999999
Q ss_pred CCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcccCC
Q 006608 557 NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 636 (639)
Q Consensus 557 ~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~~~ 636 (639)
+.|.++|-.+|.+||.+.|.+||.|.+|.|++++-||+||.|.+.+.|..|+.+|||++|.|+.|++.|++.+.|...||
T Consensus 456 tete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP 535 (549)
T KOG0147|consen 456 TETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFP 535 (549)
T ss_pred cccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 006608 637 DSI 639 (639)
Q Consensus 637 ~~~ 639 (639)
+++
T Consensus 536 ~~~ 538 (549)
T KOG0147|consen 536 DSK 538 (549)
T ss_pred Ccc
Confidence 974
No 2
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=7.6e-53 Score=456.74 Aligned_cols=371 Identities=47% Similarity=0.742 Sum_probs=271.4
Q ss_pred CcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 243 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 243 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
..+...++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||+|+|..|.|++|.|.
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQ 163 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEe
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEec
Q 006608 323 PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFA 401 (639)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~ 401 (639)
++.............. ........+|||+|||..+++++|+++|.+||.|..|.|+.+ .+|.++|||||+|.
T Consensus 164 ~~~~~~~~~~~~~~~~-------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQ-------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred ecchhhhhhhhccccc-------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 7654433322111110 001123689999999999999999999999999999999988 57789999999999
Q ss_pred CHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCC
Q 006608 402 RLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAV 481 (639)
Q Consensus 402 ~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (639)
+.++|.+|+..|+|..|.|+.|.|.|+.+....... ............++..........++..+...... ++.+
T Consensus 237 ~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 311 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGD----GGLL 311 (457)
T ss_pred CHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCC----cccc
Confidence 999999999999999999999999998855433322 21222333333333444444444444444333211 1111
Q ss_pred CCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCch
Q 006608 482 TPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYE 561 (639)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~ 561 (639)
.+.. .........+.....+....+.... ............++ ......++.+|+|.||+.+.+..++
T Consensus 312 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~l~l~n~~~~~~~~~~ 379 (457)
T TIGR01622 312 IPGT---GSKIALMQKLQRDGIIDPNIPSRYA--------TGALAIMARNSFVP-STNNNLATTCLVLSNMFDPATEEEP 379 (457)
T ss_pred CCCc---cchhhhhcccccccccccccccccc--------ccccccccCCCCCC-cccCCCCCcEEEEecCCCCcccccc
Confidence 1111 1000001111111111111110000 00000000000000 1113467889999999999999999
Q ss_pred hhHhhHHHHHHHHhhhcCcEEEEEEe-cCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcccCCC
Q 006608 562 EFDMDIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPD 637 (639)
Q Consensus 562 ~~~~~~~~dl~~~f~~~G~V~~v~v~-~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~~~~ 637 (639)
+||.+|.+||+++|++||.|+.|.|+ ..+.|++||+|.++++|++|++.|||+.|+|+.|.|.|++++.|..+||.
T Consensus 380 ~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~~~ 456 (457)
T TIGR01622 380 NFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSCLP 456 (457)
T ss_pred hHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhcCC
Confidence 99999999999999999999999996 55789999999999999999999999999999999999999999999975
No 3
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.3e-49 Score=437.53 Aligned_cols=306 Identities=23% Similarity=0.355 Sum_probs=233.2
Q ss_pred cccccccceeeccccccCHhHHHHHHhhc------------CCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcC
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRA------------GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSG 311 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~------------G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~ 311 (639)
.....++|||||||+.+|+++|.++|..+ +.|..+.+ +..+|||||+|.+.++|..||+|+|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCC
Confidence 35667899999999999999999999985 23444444 4578999999999999999999999
Q ss_pred CccCCceeeeccchhhhhhhccccccCC---------C-CCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE
Q 006608 312 QPLLGQPVMVKPSEAEKNLVQSNSSIAG---------A-SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL 381 (639)
Q Consensus 312 ~~~~g~~l~v~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~ 381 (639)
+.|.|..|.|.................. . .............+|||+|||..+++++|.++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 9999999999754322211100000000 0 00011112345689999999999999999999999999999
Q ss_pred EEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhH
Q 006608 382 VQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSR 460 (639)
Q Consensus 382 v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (639)
+.|+.+ .+|.++|||||+|.+.++|..||..|+|..|+|+.|.|.++........... .. +..++
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~--------~~-~~~~~----- 390 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDT--------SN-GMAPV----- 390 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccc--------cc-ccccc-----
Confidence 999988 6889999999999999999999999999999999999999864332110000 00 00000
Q ss_pred HHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 006608 461 ALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTI 540 (639)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (639)
. . .. .......+...
T Consensus 391 -----------------------~-----~----------------~~---------------------~~~~~~~~~~~ 405 (509)
T TIGR01642 391 -----------------------T-----L----------------LA---------------------KALSQSILQIG 405 (509)
T ss_pred -----------------------c-----c----------------cc---------------------ccchhhhcccc
Confidence 0 0 00 00000000112
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC--------CCccEEEEecchHHHHHHHHHhc
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--------SAGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~--------~~g~afV~F~s~e~A~~A~~~ln 612 (639)
+.++.+|+|.||+.+.++.++++|.+|.++|+++|++||.|+.|.|+.+ +.|+|||+|+++++|++|+++||
T Consensus 406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ln 485 (509)
T TIGR01642 406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMN 485 (509)
T ss_pred CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcC
Confidence 3477899999999999999999999999999999999999999999653 35899999999999999999999
Q ss_pred CcccCCeEEEEEEcCchhhccc
Q 006608 613 GRWFAGKMITATFMVPQTYEAK 634 (639)
Q Consensus 613 g~~~~g~~i~v~~~~~~~~~~~ 634 (639)
|..|+|++|.|.|++++.|.+.
T Consensus 486 Gr~~~gr~v~~~~~~~~~~~~~ 507 (509)
T TIGR01642 486 GRKFNDRVVVAAFYGEDCYKAG 507 (509)
T ss_pred CCEECCeEEEEEEeCHHHhhcc
Confidence 9999999999999999999764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.9e-42 Score=358.23 Aligned_cols=336 Identities=18% Similarity=0.288 Sum_probs=226.9
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
..+|||+|||+.+|+++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 5689999999999999999999999999999999999999999999999999999999996 999999999999988653
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~ 405 (639)
... .....+|||+|||..+++++|..+|..||.|..+.++.+ .++.++|||||+|.+.++
T Consensus 83 ~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 83 SSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred ccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 211 122468999999999999999999999999999999887 577889999999999999
Q ss_pred HHHHHHHcCCceecC--eEEEEEeeccCCcccCCCC-CCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCC
Q 006608 406 ARNALNLNGQLEIVG--RAIKVSAVTDQSGLQDLGA-NTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 482 (639)
Q Consensus 406 A~~A~~~l~g~~i~g--~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (639)
|..|++.|||..+.| .+|.|.++........... .....+........++.. ...+.+.+.
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 207 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLST----------------ILTAAGIGP 207 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccc----------------cccccCCCC
Confidence 999999999998887 5688888765442110000 000000000000000000 000000000
Q ss_pred CcccCCCCCCCC--cccccccccccccCCCCCCCCCCCCCCCCCccccCCCC-CCCCCCCCCCCcceEEecccCCCCCCC
Q 006608 483 PAVNSTALPLPT--APLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTA-SVPIFDTIGVPSECLLLKNMFDPKNET 559 (639)
Q Consensus 483 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~Nl~~p~~~~ 559 (639)
.......+.... ..............++. ..+............... ...........+.+|||.|| |..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL--~~~~~ 282 (352)
T TIGR01661 208 MHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ---HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNL--SPDTD 282 (352)
T ss_pred ccCcccccccCcchhhhhhhhhhhhcccccc---cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCC--CCCCC
Confidence 000000000000 00000000000000000 000000000000000000 00011111345568999999 66666
Q ss_pred chhhHhhHHHHHHHHhhhcCcEEEEEEecC-----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 560 YEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 560 ~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
+++|.++|++||.|..|+|+.+ ++|||||+|.+.++|.+|++.|||..|+|+.|+|+|++.+.+
T Consensus 283 --------e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 283 --------ETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred --------HHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 8999999999999999998654 589999999999999999999999999999999999987654
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.4e-41 Score=358.39 Aligned_cols=178 Identities=20% Similarity=0.357 Sum_probs=153.8
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
..++|||+|||+.+++++|+++|..||.|..|.|+.|+.+|.++|||||+|.+.++|..||+ |||..|.|+.|.|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 55789999999999999999999999999999999999999999999999999999999996 99999999999997532
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 404 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~ 404 (639)
........ ............+|||+||+..+++++|+++|+.||.|..|.|..+ .++.++|||||+|.+.+
T Consensus 186 ~~p~a~~~--------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQPI--------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred cccccccc--------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 21110000 0000111233578999999999999999999999999999999998 57789999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 405 DARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
+|.+|+..||++.|+|+.|.|.++....
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999999999988654
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.1e-37 Score=278.83 Aligned_cols=310 Identities=19% Similarity=0.299 Sum_probs=225.6
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
....|+|.-||.++|+++|+.+|...|.|+.|++++|+.+|.+-|||||.|.++++|++|+. +||..|..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 33569999999999999999999999999999999999999999999999999999999996 99999999999999886
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 404 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~ 404 (639)
+.... +....|||.+||..++..+|.++|.+||.|.--+|..+ -+|.++|.+||.|....
T Consensus 120 PSs~~-------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 120 PSSDS-------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred CChhh-------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 53222 33467999999999999999999999999988888877 59999999999999999
Q ss_pred HHHHHHHHcCCceecCe--EEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCC
Q 006608 405 DARNALNLNGQLEIVGR--AIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 482 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g~--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (639)
+|..||..|||..-.|. +|.|.|+..+..... .+.+.+.+...+ ....|+
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~-----------------------~a~ls~ly~sp~-----rr~~Gp 232 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTN-----------------------QALLSQLYQSPA-----RRYGGP 232 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcccccc-----------------------hhhhHHhhcCcc-----ccCCCc
Confidence 99999999999877664 799999875532110 011111111100 000011
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchh
Q 006608 483 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEE 562 (639)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~ 562 (639)
.....+.+.+-+.+ ....+.+...++.......+ .... ++......-||||.||....+
T Consensus 233 ~hh~~~r~r~~~~~------~~~~~~~rfsP~~~d~m~~l--~~~~--------lp~~~~~g~ciFvYNLspd~d----- 291 (360)
T KOG0145|consen 233 MHHQAQRFRLDNLL------NPHAAQARFSPMTIDGMSGL--AGVN--------LPGGPGGGWCIFVYNLSPDAD----- 291 (360)
T ss_pred ccchhhhhcccccc------chhhhhccCCCcccccccee--eeec--------cCCCCCCeeEEEEEecCCCch-----
Confidence 11111111000000 00000000000000000000 0000 111223467999999943322
Q ss_pred hHhhHHHHHHHHhhhcCcEEEEEEecC-----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 563 FDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 563 ~~~~~~~dl~~~f~~~G~V~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
+.-|+++|.+||.|..|+|.++ ++||+||.+.+.++|..|+..|||+.+++++|.|+|-+-+
T Consensus 292 -----e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 292 -----ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred -----HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 6889999999999999999665 6899999999999999999999999999999999996543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.8e-36 Score=323.28 Aligned_cols=341 Identities=16% Similarity=0.126 Sum_probs=219.1
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH---hcCCccCCceeeecc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA---LSGQPLLGQPVMVKP 323 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~---~~~~~~~g~~l~v~~ 323 (639)
++++|||+|||+.+|+++|.++|++||.|..|.|+. ++|||||+|.+.++|++||+ +++..|.|++|.|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 467999999999999999999999999999999984 46899999999999999996 478999999999998
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCH
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 403 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~ 403 (639)
+............ ...........|+|.||+..+++++|.++|++||.|..|.|..+.. +++|||+|.+.
T Consensus 75 s~~~~~~~~~~~~-------~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~ 144 (481)
T TIGR01649 75 STSQEIKRDGNSD-------FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESV 144 (481)
T ss_pred cCCcccccCCCCc-------ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCH
Confidence 8643321111000 0001112235799999999999999999999999999999876522 46899999999
Q ss_pred HHHHHHHHHcCCceecC--eEEEEEeeccCCcccCCCCCCCCCCCCCCC-CCcccchhhHHHHHHHhhhcC---CCcccC
Q 006608 404 EDARNALNLNGQLEIVG--RAIKVSAVTDQSGLQDLGANTTGDFDDDEG-GGLSLNARSRALLMQKLDRSG---SATTIA 477 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 477 (639)
++|.+|++.|||..|.| +.|.|.|+................+..... |........ ...+ ...... ......
T Consensus 145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 222 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQ-THRQ-RQPALLGQHPSSYGH 222 (481)
T ss_pred HHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCc-cccc-cccccccCCCccCCC
Confidence 99999999999999964 589999987644322111111111111110 000000000 0000 000000 000000
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCC-
Q 006608 478 GSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK- 556 (639)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~- 556 (639)
.+++... +...+.. .+..+.+..+.+... .........+............++.+|||+|| +.
T Consensus 223 ~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL--~~~ 286 (481)
T TIGR01649 223 DGYSSHG----GPLAPLA----GGDRMGPPHGPPSRY------RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGL--HQE 286 (481)
T ss_pred cccccCC----CCCCccc----ccccCCCcccCCCCC------cccccccccCccccccCCCCCCCCCEEEEeCC--CCC
Confidence 1111110 0000000 000000000000000 00000000000000001122457889999999 64
Q ss_pred CCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 557 NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 557 ~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
.++ +++|+++|+.||.|..|+|+.+.+|+|||+|.++++|+.|+..|||..|.|++|.|.++..+
T Consensus 287 ~vt--------~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 287 KVN--------CDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCC--------HHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 355 79999999999999999998888899999999999999999999999999999999997543
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=297.89 Aligned_cols=251 Identities=22% Similarity=0.319 Sum_probs=216.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCcc-CCceeeecc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPL-LGQPVMVKP 323 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~-~g~~l~v~~ 323 (639)
...+.||||.||.++.|++|..+|++.|.|.+++||+|+.+|.++|||||+|++.++|+.|+. ||+..| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999996 998877 678888854
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccCC--CCCcceEEEEEe
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDE--TGHCKGFGFVQF 400 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~~--~~~~~g~afVef 400 (639)
+ ...+.|||+|||.+.++++|++.|++.+ .|..|.++..+ ..+.+|||||+|
T Consensus 161 S-------------------------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 161 S-------------------------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred e-------------------------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEe
Confidence 3 3368999999999999999999999997 46777776663 556799999999
Q ss_pred cCHHHHHHHHHHc-CC-ceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCC
Q 006608 401 ARLEDARNALNLN-GQ-LEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAG 478 (639)
Q Consensus 401 ~~~~~A~~A~~~l-~g-~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (639)
.++..|..|-.+| +| +.+.|..|.|.|+.+......- .|
T Consensus 216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded-------------------------~m-------------- 256 (506)
T KOG0117|consen 216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED-------------------------TM-------------- 256 (506)
T ss_pred ecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh-------------------------hh--------------
Confidence 9999998888644 43 5789999999999877642110 00
Q ss_pred CCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCC
Q 006608 479 SAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE 558 (639)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~ 558 (639)
..=++|||+|| +.++
T Consensus 257 ---------------------------------------------------------------s~VKvLYVRNL--~~~t 271 (506)
T KOG0117|consen 257 ---------------------------------------------------------------SKVKVLYVRNL--MEST 271 (506)
T ss_pred ---------------------------------------------------------------hheeeeeeecc--chhh
Confidence 02238999999 7776
Q ss_pred CchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcccCC
Q 006608 559 TYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 636 (639)
Q Consensus 559 ~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~~~ 636 (639)
| ++.|+++|..||.|..|+.+++ +|||.|.+-++|.+|++.|||+.|.|..|.|.||.+..-.++++
T Consensus 272 T--------eE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 272 T--------EETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred h--------HHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 6 8999999999999999998754 99999999999999999999999999999999999988777664
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.5e-36 Score=320.12 Aligned_cols=242 Identities=23% Similarity=0.349 Sum_probs=203.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccC-Cceeeeccc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL-GQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~-g~~l~v~~~ 324 (639)
..++|||+|||+++++++|.++|.+||.|.+|+|++| .+|.++|||||+|.+.++|++||+ |++..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4589999999999999999999999999999999999 789999999999999999999997 9998875 676666432
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCC-eEEEEec-cC-CCCCcceEEEEEec
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLP-LD-ETGHCKGFGFVQFA 401 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-i~~v~i~-~~-~~~~~~g~afVef~ 401 (639)
...++|||+|||..+++++|.++|.+++. +..+.+. .. ..+.++|||||+|.
T Consensus 136 -------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 136 -------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred -------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC
Confidence 12578999999999999999999999863 4444333 22 35677999999999
Q ss_pred CHHHHHHHHHHcCC--ceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCC
Q 006608 402 RLEDARNALNLNGQ--LEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGS 479 (639)
Q Consensus 402 ~~~~A~~A~~~l~g--~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (639)
+.++|..|+..|+. +.|.|+.|.|.|+........
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~------------------------------------------- 227 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE------------------------------------------- 227 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------------------------------------
Confidence 99999999987653 568899999999764431000
Q ss_pred CCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCC
Q 006608 480 AVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNET 559 (639)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~ 559 (639)
......++|||.|| +..++
T Consensus 228 -----------------------------------------------------------~~~~~~k~LfVgNL--~~~~t 246 (578)
T TIGR01648 228 -----------------------------------------------------------DVMAKVKILYVRNL--MTTTT 246 (578)
T ss_pred -----------------------------------------------------------cccccccEEEEeCC--CCCCC
Confidence 00012358999999 66666
Q ss_pred chhhHhhHHHHHHHHhhhc--CcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 560 YEEFDMDIKEDVEGECSKF--GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 560 ~~~~~~~~~~dl~~~f~~~--G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
+++|+++|+.| |.|+.|.++ ++||||+|++.++|.+|++.|||..|+|+.|.|+|+.+.
T Consensus 247 --------ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 247 --------EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred --------HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 89999999999 999999875 469999999999999999999999999999999999874
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9e-36 Score=330.51 Aligned_cols=251 Identities=24% Similarity=0.414 Sum_probs=217.1
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhhh
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEK 328 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~~ 328 (639)
.|||+|||+++|+++|.++|..||.|.+|+|++|..|+.++|||||+|.+.++|.+||+ +++..|.|+.|.|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999996 99999999999998864322
Q ss_pred hhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHH
Q 006608 329 NLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 408 (639)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~ 408 (639)
... .....+|||+|||..+++++|+++|+.||.|..|.|..+.+|.++|||||+|.+.++|.+
T Consensus 82 ~~~-----------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SLR-----------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred ccc-----------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 111 012457999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCC
Q 006608 409 ALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNST 488 (639)
Q Consensus 409 A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (639)
|+..|+|..+.|+.|.|.......... .
T Consensus 145 Ai~~lng~~~~~~~i~v~~~~~~~~~~-----------------------------------~----------------- 172 (562)
T TIGR01628 145 AIQKVNGMLLNDKEVYVGRFIKKHERE-----------------------------------A----------------- 172 (562)
T ss_pred HHHHhcccEecCceEEEeccccccccc-----------------------------------c-----------------
Confidence 999999999999999987643332100 0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHH
Q 006608 489 ALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIK 568 (639)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~ 568 (639)
.......+|||+|| +.+++ +
T Consensus 173 --------------------------------------------------~~~~~~~~l~V~nl--~~~~t--------e 192 (562)
T TIGR01628 173 --------------------------------------------------APLKKFTNLYVKNL--DPSVN--------E 192 (562)
T ss_pred --------------------------------------------------ccccCCCeEEEeCC--CCcCC--------H
Confidence 00012348999999 66666 8
Q ss_pred HHHHHHhhhcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCcccC----CeEEEEEEcCch
Q 006608 569 EDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFA----GKMITATFMVPQ 629 (639)
Q Consensus 569 ~dl~~~f~~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~----g~~i~v~~~~~~ 629 (639)
++|+++|+.||.|..+.+..+ ++|+|||+|++.++|.+|++.|||..|. |+.|.|.++...
T Consensus 193 e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 193 DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 999999999999999988543 4689999999999999999999999999 999999987554
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.4e-35 Score=324.98 Aligned_cols=269 Identities=25% Similarity=0.389 Sum_probs=221.0
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
..+|||+|||.++++++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4579999999999999999999999999999999886 57899999999999999999996 999999999999965433
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 406 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A 406 (639)
..... .......++|||.|||..+++++|+++|..||.|..+.+..+.++.++|||||+|.+.++|
T Consensus 167 ~~~~~--------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 167 KHERE--------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred ccccc--------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 22211 0012335789999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHcCCceec----CeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCC
Q 006608 407 RNALNLNGQLEIV----GRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 482 (639)
Q Consensus 407 ~~A~~~l~g~~i~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (639)
.+|++.|+|..|. |..|.|.++....... ..+...+......
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~-------------------------~~~~~~~~~~~~~--------- 278 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKRAERE-------------------------AELRRKFEELQQE--------- 278 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccChhhhH-------------------------HHHHhhHHhhhhh---------
Confidence 9999999999999 9999998876544210 0111111100000
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchh
Q 006608 483 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEE 562 (639)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~ 562 (639)
........+|||+|| +..++
T Consensus 279 -------------------------------------------------------~~~~~~~~~l~V~nl--~~~~~--- 298 (562)
T TIGR01628 279 -------------------------------------------------------RKMKAQGVNLYVKNL--DDTVT--- 298 (562)
T ss_pred -------------------------------------------------------hhcccCCCEEEEeCC--CCccC---
Confidence 000113448999999 66666
Q ss_pred hHhhHHHHHHHHhhhcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchh
Q 006608 563 FDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 630 (639)
Q Consensus 563 ~~~~~~~dl~~~f~~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~ 630 (639)
.++|+++|+.||.|+.|+|+.+ ++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+..+.
T Consensus 299 -----~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 299 -----DEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred -----HHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 8999999999999999998544 57999999999999999999999999999999999998653
No 12
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=285.10 Aligned_cols=353 Identities=21% Similarity=0.298 Sum_probs=232.4
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~ 327 (639)
.||||++||+.++.++|.++|+.+|+|..+.++.++.++..+|||||+|.-.++++.|++ +.+..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 699999999999999999999999999999999999999999999999999999999997 8899999999999876543
Q ss_pred hhhhccc---cccCCCCCCC----CCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEe
Q 006608 328 KNLVQSN---SSIAGASGGG----TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 400 (639)
Q Consensus 328 ~~~~~~~---~~~~~~~~~~----~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef 400 (639)
....... .......... ......+...|.|.|||+.+...+|+.+|+.||.|..|.|+....|...|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2221100 0000000000 11123447899999999999999999999999999999999887777789999999
Q ss_pred cCHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCC--CcccCC
Q 006608 401 ARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGS--ATTIAG 478 (639)
Q Consensus 401 ~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 478 (639)
....+|..||+.+|+..|+|++|-|.|+.++........- .+..+......+....+..-.. ...-.+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~----------~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~ 235 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHE----------EKQSLKKAVKEEEDKEADEDDGKDFDEEDG 235 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchh----------hhhhhhhccchhhhcccccccccccchhcc
Confidence 9999999999999999999999999999988754432210 0000000000000000000000 000000
Q ss_pred CCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCC
Q 006608 479 SAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE 558 (639)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~ 558 (639)
....-...-.+.........+........+-. ... .......+............-..+|||.|| |+.+
T Consensus 236 e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd-----~e~----S~~~~~~k~~q~k~~~en~~~~~tVFvRNL--~fD~ 304 (678)
T KOG0127|consen 236 EEDSEDEEETDGNSEAFEEGEESEEEEDDVDD-----EES----SGKKESDKKAQNKTTRENITEGKTVFVRNL--PFDT 304 (678)
T ss_pred cccccccccccccchhhhcccccccccccccc-----ccc----cccCcccchhccccccccccccceEEEecC--Cccc
Confidence 00000000000000000000000000000000 000 000000000000001122345679999999 8887
Q ss_pred CchhhHhhHHHHHHHHhhhcCcEEEEEEecC-----CCccEEEEecchHHHHHHHHHh-----cC-cccCCeEEEEEEcC
Q 006608 559 TYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRAL-----HG-RWFAGKMITATFMV 627 (639)
Q Consensus 559 ~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~l-----ng-~~~~g~~i~v~~~~ 627 (639)
| ++.|.++|++||.|.++.|+.. ++|+|||.|.+..+|++||.+. .| ..|.|+.|.|.+|.
T Consensus 305 t--------EEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 305 T--------EEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred c--------HHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeecc
Confidence 7 9999999999999999887433 6899999999999999999976 24 77999999999987
Q ss_pred chh
Q 006608 628 PQT 630 (639)
Q Consensus 628 ~~~ 630 (639)
...
T Consensus 377 ~Rk 379 (678)
T KOG0127|consen 377 TRK 379 (678)
T ss_pred chH
Confidence 654
No 13
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=295.70 Aligned_cols=304 Identities=24% Similarity=0.419 Sum_probs=240.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhc-----------C-CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcC
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRA-----------G-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSG 311 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~-----------G-~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~ 311 (639)
.....+.++|+++|+.++++.+..+|... | .+..+.|. ..+.||||+|.+.++|..|+.+++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhcccc
Confidence 35677899999999999999999999864 3 36666664 456699999999999999999999
Q ss_pred CccCCceeeeccchhhhhhhccccccC----CCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC
Q 006608 312 QPLLGQPVMVKPSEAEKNLVQSNSSIA----GASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 387 (639)
Q Consensus 312 ~~~~g~~l~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~ 387 (639)
..+.|.++++................. ................++|++||..+++.++.+++..||++....++.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 999999999854332222211111110 0111122223355678999999999999999999999999999999998
Q ss_pred -CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHH
Q 006608 388 -ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQK 466 (639)
Q Consensus 388 -~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (639)
.+|.++||||.+|.++..+..|+..|||+.+++.+|.|+.+...........+ .
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~--------~----------------- 379 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN--------I----------------- 379 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC--------c-----------------
Confidence 68899999999999999999999999999999999999997655432111110 0
Q ss_pred hhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcce
Q 006608 467 LDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 546 (639)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (639)
. +. +.+....-..+..+.++.+
T Consensus 380 -~------------------~~---------------------------------------~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 380 -S------------------QS---------------------------------------QVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred -c------------------cc---------------------------------------ccccchhhhcccCCCcchh
Confidence 0 00 0011111111234668889
Q ss_pred EEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC--------CCccEEEEecchHHHHHHHHHhcCcccCC
Q 006608 547 LLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--------SAGFVYLRFENTQSAFAAQRALHGRWFAG 618 (639)
Q Consensus 547 l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~--------~~g~afV~F~s~e~A~~A~~~lng~~~~g 618 (639)
|++.|+++|.++.++++|++|.+||+..|.+||.|.+|.++.+ +.|.+||+|++.++|++|+++|+|+.|+|
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 9999999999999999999999999999999999999999665 57899999999999999999999999999
Q ss_pred eEEEEEEcCchhhcccCC
Q 006608 619 KMITATFMVPQTYEAKFP 636 (639)
Q Consensus 619 ~~i~v~~~~~~~~~~~~~ 636 (639)
++|.++|++++.|.+...
T Consensus 482 RtVvtsYydeDkY~~r~~ 499 (500)
T KOG0120|consen 482 RTVVASYYDEDKYHAREF 499 (500)
T ss_pred cEEEEEecCHHHhhcccc
Confidence 999999999999998654
No 14
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=267.96 Aligned_cols=369 Identities=22% Similarity=0.373 Sum_probs=239.3
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
-++||||.|.+.+.|+.|+..|..||+|+.|.+..|+.|++++|||||+|.-+|.|+.|++ |||..++|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999997 999999999999963211
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~~ 405 (639)
..+..... ............|||..+.++++++||+..|+.||+|..|++-..+ .+.++||+|++|.+..+
T Consensus 193 ---mpQAQpiI-----D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 193 ---MPQAQPII-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred ---CcccchHH-----HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 00000000 0000011335789999999999999999999999999999999986 44579999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCc-ccCCCCCC-C
Q 006608 406 ARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSAT-TIAGSAVT-P 483 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 483 (639)
...|+..||-+-|+|.-|.|-.+........... ....++... ....+...+.++..-+-.++.. +..+..+. .
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pa-t~s~~P~aa---aVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vS 340 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPA-TVSAIPAAA---AVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVS 340 (544)
T ss_pred hHHHhhhcchhhcccceEecccccCCCchhcCCC-CcccCchHH---HHHHHHHHHHHHHHHHhccCCcccccCCccccC
Confidence 9999999999999999999998876654332111 111111100 0011112222222221111110 00111000 0
Q ss_pred cccCCCCCCC-------CcccccccccccccCCCCCCCCC------C------CCC-----CCCCccccCCCCCCCC---
Q 006608 484 AVNSTALPLP-------TAPLLGAASAVSTLVPPLVQGTV------P------THP-----GQLGTALQVPTASVPI--- 536 (639)
Q Consensus 484 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------~------~~~-----~~~~~~~~~~~~~~~~--- 536 (639)
..+....+.+ .....|....+.++.|+-+.... + +.. +........|....+.
T Consensus 341 pA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~ 420 (544)
T KOG0124|consen 341 PAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLS 420 (544)
T ss_pred ccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhh
Confidence 0010011100 01111122222222221111000 0 000 0000000111111100
Q ss_pred ------CC-C-----------CCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCC-------
Q 006608 537 ------FD-T-----------IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA------- 591 (639)
Q Consensus 537 ------~~-~-----------~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~------- 591 (639)
+. . -...+++|++.||++|.... .+|+.+|.++|.+||.|..|.|-....
T Consensus 421 ~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiD-----e~LegEi~EECgKfG~V~rViI~nekq~e~edae 495 (544)
T KOG0124|consen 421 EQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDID-----EDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAE 495 (544)
T ss_pred hhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhh-----hHHHHHHHHHHhcccceeEEEEEecccccccchh
Confidence 00 0 13567899999999886533 457899999999999999998843322
Q ss_pred --ccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcc
Q 006608 592 --GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 592 --g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~ 633 (639)
-..||+|....++.+|.++|+|+.|+|++|..+.+....|.+
T Consensus 496 iiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 496 IIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDN 539 (544)
T ss_pred hhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccc
Confidence 246999999999999999999999999999999988887764
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.5e-33 Score=270.52 Aligned_cols=172 Identities=31% Similarity=0.502 Sum_probs=152.7
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcC-CccCC--cee
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSG-QPLLG--QPV 319 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~-~~~~g--~~l 319 (639)
+..+.-++|||.||..++|.||+++|++||.|..|.|++|+.|+.++|||||.|.+.++|.+|+. ||. ..|-| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34456789999999999999999999999999999999999999999999999999999999995 555 55655 788
Q ss_pred eeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEE
Q 006608 320 MVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQ 399 (639)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVe 399 (639)
.|++++.+.... ....+|||+-|+..++|.+|.++|.+||.|++|.|.++..+.++|+|||.
T Consensus 110 qvk~Ad~E~er~------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~ 171 (510)
T KOG0144|consen 110 QVKYADGERERI------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVK 171 (510)
T ss_pred eecccchhhhcc------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEE
Confidence 888886554433 22578999999999999999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHcCCc-eecC--eEEEEEeeccCCc
Q 006608 400 FARLEDARNALNLNGQL-EIVG--RAIKVSAVTDQSG 433 (639)
Q Consensus 400 f~~~~~A~~A~~~l~g~-~i~g--~~i~v~~~~~~~~ 433 (639)
|.+.+.|..||+.|||. .+.| .+|.|.|+..+..
T Consensus 172 fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 172 FSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred EehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99999999999999986 5666 4899999987655
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3e-32 Score=294.47 Aligned_cols=292 Identities=21% Similarity=0.253 Sum_probs=209.2
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC--ceeeeccch
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVKPSE 325 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g--~~l~v~~~~ 325 (639)
..|||+||++.+|+++|.++|+.||.|..|.|+.+.. .|+|||+|.+.++|.+|++ |||..|.| ..|+|.++.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 4799999999999999999999999999999987543 4799999999999999996 99999965 478877665
Q ss_pred hhhhhhcc----------------------------cccc----------CCCCC--------------C----------
Q 006608 326 AEKNLVQS----------------------------NSSI----------AGASG--------------G---------- 343 (639)
Q Consensus 326 ~~~~~~~~----------------------------~~~~----------~~~~~--------------~---------- 343 (639)
.....+.. .... .+... +
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence 42211000 0000 00000 0
Q ss_pred ------C--------CCCCCCCCceEEEcCCCC-cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHH
Q 006608 344 ------G--------TGPYSGGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 408 (639)
Q Consensus 344 ------~--------~~~~~~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~ 408 (639)
. ......++.+|||+||+. .+++++|.++|+.||.|..|.|+.+ .+|+|||+|.+.++|..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~ 328 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQL 328 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHH
Confidence 0 000123568999999997 6999999999999999999999876 25799999999999999
Q ss_pred HHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCC
Q 006608 409 ALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNST 488 (639)
Q Consensus 409 A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (639)
||..|||..|.|+.|.|.++........... ..+.. +. .. ..+. .....
T Consensus 329 Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~----~~~~~----~~--------------------~~-~d~~--~~~~~ 377 (481)
T TIGR01649 329 ALTHLNGVKLFGKPLRVCPSKQQNVQPPREG----QLDDG----LT--------------------SY-KDYS--SSRNH 377 (481)
T ss_pred HHHHhCCCEECCceEEEEEcccccccCCCCC----cCcCC----Cc--------------------cc-cccc--CCccc
Confidence 9999999999999999999765432110000 00000 00 00 0000 00000
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHH
Q 006608 489 ALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIK 568 (639)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~ 568 (639)
.+. .+. .........++.+|||.|| |.+++ +
T Consensus 378 r~~-------------------------------------~~~--~~~~~~~~~ps~~L~v~NL--p~~~t--------e 408 (481)
T TIGR01649 378 RFK-------------------------------------KPG--SANKNNIQPPSATLHLSNI--PLSVS--------E 408 (481)
T ss_pred cCC-------------------------------------Ccc--cccccccCCCCcEEEEecC--CCCCC--------H
Confidence 000 000 0001112347789999999 77777 8
Q ss_pred HHHHHHhhhcCc--EEEEEEecC---CCccEEEEecchHHHHHHHHHhcCcccCCe------EEEEEEcCc
Q 006608 569 EDVEGECSKFGK--LKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK------MITATFMVP 628 (639)
Q Consensus 569 ~dl~~~f~~~G~--V~~v~v~~~---~~g~afV~F~s~e~A~~A~~~lng~~~~g~------~i~v~~~~~ 628 (639)
++|+++|+.||. |..|++... .+++|||+|.+.++|.+|+..|||..|.|+ +|+|+|+..
T Consensus 409 e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 409 EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 999999999998 888887432 368999999999999999999999999998 599999875
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-33 Score=255.62 Aligned_cols=234 Identities=24% Similarity=0.415 Sum_probs=189.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
..+++||||||..++||+-|..+|++.|.|..++||.+ .|+|.++.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 46789999999999999999999999999999999976 23443332
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 404 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~ 404 (639)
.+... ..+.....-.+||+.|...++-++|++.|.+||+|.+++|+++ .|++++||+||.|.+.+
T Consensus 50 ~p~nQ--------------sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 50 APGNQ--------------SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred CcccC--------------CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 21000 0011112456999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCc
Q 006608 405 DARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPA 484 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (639)
+|+.||..|||.+|+++.|+..|+.-+... .+++.+.+..
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp~e-------------~n~~~ltfde--------------------------- 155 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKPSE-------------MNGKPLTFDE--------------------------- 155 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCccc-------------cCCCCccHHH---------------------------
Confidence 999999999999999999999998866511 1111111111
Q ss_pred ccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhH
Q 006608 485 VNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFD 564 (639)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~ 564 (639)
.++...+..++|||.|| +..++
T Consensus 156 ---------------------------------------------------V~NQssp~NtsVY~G~I--~~~lt----- 177 (321)
T KOG0148|consen 156 ---------------------------------------------------VYNQSSPDNTSVYVGNI--ASGLT----- 177 (321)
T ss_pred ---------------------------------------------------HhccCCCCCceEEeCCc--Ccccc-----
Confidence 12223446779999999 44566
Q ss_pred hhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 565 MDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 565 ~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
+++|++.|+.||.|..|+|-+ -+|++||.|++.|.|..||..|||..++|+.|+|.|=.+.
T Consensus 178 ---e~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 178 ---EDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred ---HHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 799999999999999999955 4899999999999999999999999999999999996553
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-30 Score=264.51 Aligned_cols=337 Identities=20% Similarity=0.275 Sum_probs=227.5
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhhh
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEK 328 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~~ 328 (639)
.|||| +++|+.+|.++|+++|+|+.|+++.|. | +-|||||.|.++.+|.+||+ +|...+.|++|.|.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 999999999999999999999999999 7 99999999999999999996 99999999999998864321
Q ss_pred hhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHH
Q 006608 329 NLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 408 (639)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~ 408 (639)
. .|||.||+..++...|.++|+.||.|.+|++..+..| ++|| ||+|.+.+.|.+
T Consensus 77 ~------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 77 S------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKK 130 (369)
T ss_pred c------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHH
Confidence 1 2999999999999999999999999999999999888 8999 999999999999
Q ss_pred HHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCC
Q 006608 409 ALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNST 488 (639)
Q Consensus 409 A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (639)
|+..|||..+.|+.|.|...................+..-...... .......+...+...+.............. ..
T Consensus 131 ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~-~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~ 208 (369)
T KOG0123|consen 131 AIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLE-EDSTDEELKDLFSAYGSITSVAVMRDSIGK-SK 208 (369)
T ss_pred HHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccc-cccchHHHHHhhcccCcceEEEEeecCCCC-CC
Confidence 9999999999999999998887766544333211111111111111 111111222222222211110000000000 01
Q ss_pred CCCCCCcccccccccccccCCCC--------CCCCCCCCCCCCCccccCCCCCCCC-CCCCCCCcceEEecccCCCCCCC
Q 006608 489 ALPLPTAPLLGAASAVSTLVPPL--------VQGTVPTHPGQLGTALQVPTASVPI-FDTIGVPSECLLLKNMFDPKNET 559 (639)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~Nl~~p~~~~ 559 (639)
.+.... +..+..+..+.... ..+.+.................... .........+|+|.|+ ...++
T Consensus 209 ~~gfv~---f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknl--d~~~~ 283 (369)
T KOG0123|consen 209 GFGFVN---FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNL--DETLS 283 (369)
T ss_pred Ccccee---ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccC--ccccc
Confidence 111111 10000000000000 0111111111111111111110000 1111345669999998 44444
Q ss_pred chhhHhhHHHHHHHHhhhcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcc
Q 006608 560 YEEFDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 560 ~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~ 633 (639)
.+.|+++|+.||.|.+++|+.+ ++|++||+|.++++|.+|+..|||..+.|+.|.|.++....+..
T Consensus 284 --------~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 284 --------DEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred --------hhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 7999999999999999888543 68999999999999999999999999999999999987655543
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=9.2e-28 Score=264.28 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=134.9
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccC------------CCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCc
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPF------------GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL 416 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~------------G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~ 416 (639)
....++|||+|||+.+++++|.++|..+ +.|..+.+.. .+|||||+|.+.++|..||. |+|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 4557899999999999999999999964 3455555543 37899999999999999995 9999
Q ss_pred eecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcc
Q 006608 417 EIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAP 496 (639)
Q Consensus 417 ~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (639)
.|.|..|.|.............. . +..........
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~-------------------------------~-----------~~~~~~~~~~~--- 280 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITP-------------------------------E-----------VSQKNPDDNAK--- 280 (509)
T ss_pred EeeCceeEecCccccCCccccCC-------------------------------C-----------CCCCCCccccc---
Confidence 99999999976543321000000 0 00000000000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhh
Q 006608 497 LLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS 576 (639)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~ 576 (639)
..+ .+ ...........+|||+|| |..++ +++|.++|+
T Consensus 281 ~~~-----------------------------~~----~~~~~~~~~~~~l~v~nl--p~~~~--------~~~l~~~f~ 317 (509)
T TIGR01642 281 NVE-----------------------------KL----VNSTTVLDSKDRIYIGNL--PLYLG--------EDQIKELLE 317 (509)
T ss_pred ccc-----------------------------cc----cccccCCCCCCEEEEeCC--CCCCC--------HHHHHHHHH
Confidence 000 00 000011224569999999 77777 899999999
Q ss_pred hcCcEEEEEEecC-----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 577 KFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 577 ~~G~V~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
.||.|..+.|+.+ ++|+|||+|.+.++|..|++.|||..|+|+.|.|.++..
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 9999999988543 689999999999999999999999999999999999854
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2.4e-28 Score=249.08 Aligned_cols=168 Identities=23% Similarity=0.381 Sum_probs=152.3
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++|||+|||+++|+++|+++|..||.|+.|+|+.|..++.++|||||+|.+.++|.+||+ |++..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 356899999999999999999999999999999999999999999999999999999999996 9999999999999886
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCH
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~ 403 (639)
.+... .....+|||.|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.
T Consensus 185 ~p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 54211 122468999999999999999999999999999999988 5899999999999999
Q ss_pred HHHHHHHHHcCCceecC--eEEEEEeeccCC
Q 006608 404 EDARNALNLNGQLEIVG--RAIKVSAVTDQS 432 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g--~~i~v~~~~~~~ 432 (639)
++|.+||+.||+..|.+ ++|.|.++....
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999998876 689999887654
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=3.2e-26 Score=248.53 Aligned_cols=171 Identities=23% Similarity=0.335 Sum_probs=142.2
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 578999999999999999999999999999999998 688899999999999999999997 899999999999987543
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
...... .. .. .
T Consensus 168 ~~~~~~-----------------------------~~--~~------------~-------------------------- 178 (457)
T TIGR01622 168 EKNRAA-----------------------------KA--AT------------H-------------------------- 178 (457)
T ss_pred hhhhhh-----------------------------hc--cc------------c--------------------------
Confidence 221000 00 00 0
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec--
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-- 588 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~-- 588 (639)
.+ . ..+.+.+|||.|| |..++ +++|.++|+.||.|..|.|..
T Consensus 179 ------------------~~-~-------~~p~~~~l~v~nl--~~~~t--------e~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 179 ------------------QP-G-------DIPNFLKLYVGNL--HFNIT--------EQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred ------------------cC-C-------CCCCCCEEEEcCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEEcC
Confidence 00 0 0012569999999 77777 899999999999999998864
Q ss_pred ---CCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 589 ---DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 589 ---~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
.++|+|||+|.+.++|.+|++.|||..|.|++|.|.|+..
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 3579999999999999999999999999999999999764
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.5e-26 Score=211.81 Aligned_cols=178 Identities=28% Similarity=0.396 Sum_probs=154.9
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
.-.|||+-|...|+.+.|++.|.+||.|.+++|++|.+|+++||||||.|...++|+.||+ |+|.=|.++.|+-+++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4569999999999999999999999999999999999999999999999999999999997 999999999999999877
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 406 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A 406 (639)
+.......... -...........++||++||+..+++++|++.|.+||.|.+|++.++ +||+||.|.+.|.|
T Consensus 142 Kp~e~n~~~lt---fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLT---FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCcc---HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhH
Confidence 66222111100 00111223355789999999999999999999999999999999988 88999999999999
Q ss_pred HHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 407 RNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 407 ~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
..||..+|+..|.|..|++.|.+....
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCCC
Confidence 999999999999999999999876553
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=5.7e-26 Score=231.68 Aligned_cols=165 Identities=22% Similarity=0.385 Sum_probs=144.6
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||+|||+++++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||+.|++..|.+++|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 345789999999999999999999999999999999988 6899999999999999999999999999999999999998
Q ss_pred eccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccccccccccc
Q 006608 428 VTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTL 507 (639)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (639)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 642210
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEe
Q 006608 508 VPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE 587 (639)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~ 587 (639)
.....+|||.|| |..++ +++|+++|++||.|+.|.|+
T Consensus 190 ---------------------------------~~~~~~lfV~nL--p~~vt--------ee~L~~~F~~fG~V~~v~i~ 226 (346)
T TIGR01659 190 ---------------------------------SIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGQIVQKNIL 226 (346)
T ss_pred ---------------------------------ccccceeEEeCC--CCccc--------HHHHHHHHHhcCCEEEEEEe
Confidence 001237999999 77777 89999999999999999886
Q ss_pred cC-----CCccEEEEecchHHHHHHHHHhcCcccCC--eEEEEEEcCchh
Q 006608 588 KD-----SAGFVYLRFENTQSAFAAQRALHGRWFAG--KMITATFMVPQT 630 (639)
Q Consensus 588 ~~-----~~g~afV~F~s~e~A~~A~~~lng~~~~g--~~i~v~~~~~~~ 630 (639)
.+ ++|+|||+|++.++|++||+.||+..|.| ++|.|.|+.+..
T Consensus 227 ~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 227 RDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 54 46899999999999999999999999876 799999998753
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=1.6e-26 Score=233.88 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=142.6
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
+-..||||||.+++++++|+.+|++||.|..|.+++|..||.++|||||+|.+.++|.+|++ |||+.|.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 44449999999999999999999999999999999999999999999999999999999985 99999999999984221
Q ss_pred hhhhhhcc-------------cc---------------ccC----------------------CCCC---CCC-------
Q 006608 326 AEKNLVQS-------------NS---------------SIA----------------------GASG---GGT------- 345 (639)
Q Consensus 326 ~~~~~~~~-------------~~---------------~~~----------------------~~~~---~~~------- 345 (639)
........ .. ... ...+ ...
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 10000000 00 000 0000 001
Q ss_pred CCCCCCCceEEEcCCCCcCCH----------HHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCC
Q 006608 346 GPYSGGARRLYVGNLHFNMTE----------DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ 415 (639)
Q Consensus 346 ~~~~~~~~~l~v~nlp~~~~e----------~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g 415 (639)
.....++.|+.|.|+....++ ++|.+.|.+||.|.+|.+.++ +.|++||.|.+++.|..|+.+|||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhh
Confidence 111267788999999654332 789999999999999999775 237999999999999999999999
Q ss_pred ceecCeEEEEEeeccCC
Q 006608 416 LEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 416 ~~i~g~~i~v~~~~~~~ 432 (639)
.||.|+.|++.|.....
T Consensus 513 rWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPLER 529 (549)
T ss_pred hhhccceeEEEEeehhh
Confidence 99999999999976544
No 25
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=1.7e-24 Score=211.54 Aligned_cols=189 Identities=22% Similarity=0.347 Sum_probs=148.2
Q ss_pred CCCCCCcccccccceeeccccccCHhHHHHHHh-hcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccC
Q 006608 238 VEPEVDPERDQRTVFAYQICLKADERDVYEFFS-RAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL 315 (639)
Q Consensus 238 ~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~-~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~ 315 (639)
-++..++..-.+.+||.|||+++..++|+++|. +.|.|+.|.|+.|.. |+++|||.|+|+++|.+++|++ |+.+.+.
T Consensus 34 gs~~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 34 GSQGGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred cCCCCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 334444555667799999999999999999998 689999999999976 8999999999999999999998 9999999
Q ss_pred Cceeeeccchhhhhhhcccc---------------------ccC------------------------------------
Q 006608 316 GQPVMVKPSEAEKNLVQSNS---------------------SIA------------------------------------ 338 (639)
Q Consensus 316 g~~l~v~~~~~~~~~~~~~~---------------------~~~------------------------------------ 338 (639)
|++|.|+.....+....... ...
T Consensus 113 GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 113 GRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS 192 (608)
T ss_pred CceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence 99999975443221100000 000
Q ss_pred -----CCCC----CCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHH
Q 006608 339 -----GASG----GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 409 (639)
Q Consensus 339 -----~~~~----~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A 409 (639)
+.+. .......+...++||.||...+....|++.|.-.|.|+.|.+-.++.|.++|+|.++|..+-.|.+|
T Consensus 193 ~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqa 272 (608)
T KOG4212|consen 193 NYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQA 272 (608)
T ss_pred hhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHH
Confidence 0000 0001122345689999999999999999999999999999998888889999999999999999999
Q ss_pred HHHcCCceecCeEEEEEe
Q 006608 410 LNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 410 ~~~l~g~~i~g~~i~v~~ 427 (639)
|..|++.-+..++.++..
T Consensus 273 Isml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 273 ISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHhhccCCCccccceeec
Confidence 999997666666665555
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=3.4e-25 Score=232.31 Aligned_cols=186 Identities=26% Similarity=0.423 Sum_probs=150.6
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC--ceeeecc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVKP 323 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g--~~l~v~~ 323 (639)
...+|||+|||..+++++|..+|..||.|..+.|+.+..++.++|||||+|.+.++|+.||+ |+|..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 34689999999999999999999999999999999998889999999999999999999996 99998877 5677766
Q ss_pred chhhhhhhc----c--------cccc--------------------------------------------------CCC-
Q 006608 324 SEAEKNLVQ----S--------NSSI--------------------------------------------------AGA- 340 (639)
Q Consensus 324 ~~~~~~~~~----~--------~~~~--------------------------------------------------~~~- 340 (639)
+........ . .... ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 532220000 0 0000 000
Q ss_pred ----------CCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHH
Q 006608 341 ----------SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNA 409 (639)
Q Consensus 341 ----------~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A 409 (639)
.+...........+|||+|||+.+++++|.++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00000000122347999999999999999999999999999999999 4999999999999999999999
Q ss_pred HHHcCCceecCeEEEEEeeccCC
Q 006608 410 LNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 410 ~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
|..|||..|+|+.|.|.|...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999987664
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=3.5e-25 Score=230.06 Aligned_cols=273 Identities=21% Similarity=0.304 Sum_probs=208.5
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
.+..+.|+|+|||..+..++|..+|..||.|..+.|+.. | --|+|+|.++.+|.+|.. |....+...++.+.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 345578999999999999999999999999999955421 1 149999999999999996 888888888887765
Q ss_pred chhhhhhhc-------cccccC-------------CCCCCCCC-------C---CC-CCCceEEEcCCCCcCCHHHHHHH
Q 006608 324 SEAEKNLVQ-------SNSSIA-------------GASGGGTG-------P---YS-GGARRLYVGNLHFNMTEDQLRQV 372 (639)
Q Consensus 324 ~~~~~~~~~-------~~~~~~-------------~~~~~~~~-------~---~~-~~~~~l~v~nlp~~~~e~~l~~~ 372 (639)
+........ ...... +....-.. . .. ...++|||.||++.++.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 533222100 000000 00000000 0 01 11233999999999999999999
Q ss_pred hccCCCeEEEEeccCCCC----CcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCC
Q 006608 373 FEPFGTVELVQLPLDETG----HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDD 448 (639)
Q Consensus 373 f~~~G~i~~v~i~~~~~~----~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 448 (639)
|.+.|.|..|.|.+...+ .+.|||||+|.++++|+.|+..|+|..|.|+.|.|.++..... ....
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~--~~~g--------- 604 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA--STVG--------- 604 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc--cccc---------
Confidence 999999999999877433 2459999999999999999999999999999999999871110 0000
Q ss_pred CCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCcccc
Q 006608 449 EGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQ 528 (639)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (639)
.
T Consensus 605 --------K----------------------------------------------------------------------- 605 (725)
T KOG0110|consen 605 --------K----------------------------------------------------------------------- 605 (725)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-----CCccEEEEecchHH
Q 006608 529 VPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQS 603 (639)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-----~~g~afV~F~s~e~ 603 (639)
-......+..|+|.|| |++++ ..+|+.+|..||.|..|.|++. ++|+|||+|-++.+
T Consensus 606 --------~~~~kk~~tKIlVRNi--pFeAt--------~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 606 --------KKSKKKKGTKILVRNI--PFEAT--------KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred --------ccccccccceeeeecc--chHHH--------HHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 0000112458999999 98877 8999999999999999999765 47999999999999
Q ss_pred HHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 604 AFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 604 A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
|.+|+.+|.++.|-|+.|.++|+..++.
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999987654
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.8e-24 Score=231.38 Aligned_cols=175 Identities=23% Similarity=0.397 Sum_probs=145.1
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4679999999999999999999999999999999988 689999999999999999999999999999999999998432
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
...... .. .
T Consensus 186 ~~p~a~------------------~~---------------~-------------------------------------- 194 (612)
T TIGR01645 186 NMPQAQ------------------PI---------------I-------------------------------------- 194 (612)
T ss_pred cccccc------------------cc---------------c--------------------------------------
Confidence 111000 00 0
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~ 589 (639)
...........+|||.|| +..++ +++|+++|+.||.|+.|.|..+
T Consensus 195 -------------------------~~~~~~~~~~~rLfVgnL--p~~vt--------eedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 195 -------------------------DMVQEEAKKFNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred -------------------------ccccccccccceEEeecC--CCCCC--------HHHHHHHHhhcCCeeEEEEEec
Confidence 000000112348999999 76666 8999999999999999998653
Q ss_pred -----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 590 -----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 590 -----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.....
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 579999999999999999999999999999999999876543
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=217.76 Aligned_cols=184 Identities=24% Similarity=0.415 Sum_probs=149.0
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
-..|+|.||||.+...+|..+|+.||.|..|.|+....++.. |||||+|....+|..||+ +|+..|.|++|.|.|+-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 578999999999999999999999999999999987775544 999999999999999998 999999999999988754
Q ss_pred hhhhhcccc----------------c-----cC---------------------------------------CCCCCCC-
Q 006608 327 EKNLVQSNS----------------S-----IA---------------------------------------GASGGGT- 345 (639)
Q Consensus 327 ~~~~~~~~~----------------~-----~~---------------------------------------~~~~~~~- 345 (639)
+........ . .. ..+.+..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 332111000 0 00 0000000
Q ss_pred ----------CCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHc-
Q 006608 346 ----------GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN- 413 (639)
Q Consensus 346 ----------~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l- 413 (639)
........+|||.|||++++++.|.+.|.+||+|..+.|+.+ .|+.++|.|||.|.+...|.+||.+-
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 001122379999999999999999999999999999999998 69999999999999999999999765
Q ss_pred ----CC-ceecCeEEEEEeeccCC
Q 006608 414 ----GQ-LEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 414 ----~g-~~i~g~~i~v~~~~~~~ 432 (639)
.| +.|.|+.|.|..+....
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 33 78899999999987665
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=6.2e-24 Score=185.12 Aligned_cols=168 Identities=29% Similarity=0.459 Sum_probs=149.3
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
...+||||||+..++++-|.++|-+.|+|+++.|++|..+...+|||||+|.+.|+|+-|++ |+...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999998 99999999999997654
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE-EEeccC-CCCCcceEEEEEecCH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLD-ETGHCKGFGFVQFARL 403 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~-v~i~~~-~~~~~~g~afVef~~~ 403 (639)
..+. ....+..|||+||.+.+++..|...|+.||.|.. ..++.+ .+|.++||+||.|.+.
T Consensus 88 ~~~~------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 88 AHQK------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred cccc------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 1100 0122368999999999999999999999998854 466666 5789999999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 404 EDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
+.+.+|+..+||..+..++|.|.|+..+-
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 99999999999999999999999987665
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.2e-23 Score=189.00 Aligned_cols=186 Identities=27% Similarity=0.446 Sum_probs=153.6
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC--ceeeec
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVK 322 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g--~~l~v~ 322 (639)
-....|||.+||..+|..+|.++|.+||.|..-+|+.|..||.++|.|||.|....+|+.||. |||..-.| .+|.|+
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 344679999999999999999999999999999999999999999999999999999999997 99998876 688888
Q ss_pred cchhhhhhhccc----------cccC----------------------------------CCCCCCCCCCCCCCceEEEc
Q 006608 323 PSEAEKNLVQSN----------SSIA----------------------------------GASGGGTGPYSGGARRLYVG 358 (639)
Q Consensus 323 ~~~~~~~~~~~~----------~~~~----------------------------------~~~~~~~~~~~~~~~~l~v~ 358 (639)
++..+....... .... +..+..-.......++|||.
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 765322100000 0000 00001112223447899999
Q ss_pred CCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 359 NLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 359 nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
||.++++|.-|+++|.+||.|..|+++++ .+.+.+||+||.+.+.++|..||..|||..++++.|.|.|-..+
T Consensus 285 NLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999 57899999999999999999999999999999999999996543
No 32
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.89 E-value=4e-22 Score=194.02 Aligned_cols=321 Identities=18% Similarity=0.227 Sum_probs=204.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH---hcCCccCCceeeec
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA---LSGQPLLGQPVMVK 322 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~---~~~~~~~g~~l~v~ 322 (639)
.+++.|.++|||++++|++|..++.+||.|.++.++..++ -|||+|.+.+.|...+. --...+.|++|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678899999999999999999999999999999987654 79999999999988553 22346788999998
Q ss_pred cchhhhhhhccccc----------------cC-CCCC----CCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE
Q 006608 323 PSEAEKNLVQSNSS----------------IA-GASG----GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL 381 (639)
Q Consensus 323 ~~~~~~~~~~~~~~----------------~~-~~~~----~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~ 381 (639)
++............ .. ..+. .+......+--.++|.|+-..++.+-|.++|++||.|..
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 76533321111110 00 0000 011111222345778999999999999999999999988
Q ss_pred EEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec-C-eEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhh
Q 006608 382 VQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV-G-RAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARS 459 (639)
Q Consensus 382 v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~-g-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (639)
|.......+. -|+|+|.+++.|+.|..+|+|..|. | +.|.|.|+.-..............+...+ ++.+...
T Consensus 180 IiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~---LP~gd~~ 253 (492)
T KOG1190|consen 180 IITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPD---LPVGDGQ 253 (492)
T ss_pred EEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCC---CCCCccc
Confidence 7555432221 3999999999999999999998775 3 46777777654433222222222222222 1111000
Q ss_pred HHHHHHHhhhcCCCcccCCCCC-CCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 006608 460 RALLMQKLDRSGSATTIAGSAV-TPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFD 538 (639)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (639)
.. ...+ .+..++ .+..+..... .+..+..+.. ..... .
T Consensus 254 p~--l~~~--------~~aa~~~~~~~~g~p~a--------ip~~~~~a~~------------------a~~~~-----~ 292 (492)
T KOG1190|consen 254 PS--LDQL--------MAAAFGSVPAVHGAPLA--------IPSGAAGANA------------------ADGKI-----E 292 (492)
T ss_pred cc--cchh--------hhccccccccccCCccc--------CCccchhhcc------------------ccccc-----c
Confidence 00 0000 000000 0000000000 0000000000 00000 0
Q ss_pred CCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCC
Q 006608 539 TIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG 618 (639)
Q Consensus 539 ~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g 618 (639)
... .+.+|.|.|| .++..| .+-|+.+|+.||.|.+|+|..+.+..|+|+|.+.+.|+-|++.|+|..+-|
T Consensus 293 ~~~-~n~vllvsnl-n~~~VT--------~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~g 362 (492)
T KOG1190|consen 293 SPS-ANVVLLVSNL-NEEAVT--------PDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYG 362 (492)
T ss_pred cCC-CceEEEEecC-chhccc--------hhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecC
Confidence 000 2568999999 233333 689999999999999999988878899999999999999999999999999
Q ss_pred eEEEEEEcCch
Q 006608 619 KMITATFMVPQ 629 (639)
Q Consensus 619 ~~i~v~~~~~~ 629 (639)
|.|+|.|-.-.
T Consensus 363 k~lrvt~SKH~ 373 (492)
T KOG1190|consen 363 KKLRVTLSKHT 373 (492)
T ss_pred ceEEEeeccCc
Confidence 99999995543
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=9e-22 Score=193.94 Aligned_cols=170 Identities=26% Similarity=0.396 Sum_probs=146.7
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCC-eeEEEEeecC-CCCCcccEEEEEEcccccHHHHHH--hcC-CccCCcee
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGK-VRDVRLIMDR-NSRRSKGVGYVEFYDVMSVPMAIA--LSG-QPLLGQPV 319 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~~~i~~d~-~~~~~~g~afV~f~~~~~a~~al~--~~~-~~~~g~~l 319 (639)
+...++|||||||.+.++++|.+.|++.++ |++|.|...+ +..+++|||||+|.+...|..|-. +++ ++|.|+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 457789999999999999999999999985 7788887765 446799999999999999988874 444 67899999
Q ss_pred eeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEE
Q 006608 320 MVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQ 399 (639)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVe 399 (639)
.|.|+.+........ ...-+.|||.||+..+|++.|+++|..||.|..|+.+++ ||||.
T Consensus 241 tVdWAep~~e~ded~--------------ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVH 299 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDT--------------MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVH 299 (506)
T ss_pred eeeccCcccCCChhh--------------hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEe
Confidence 999987655433222 122478999999999999999999999999999999977 99999
Q ss_pred ecCHHHHHHHHHHcCCceecCeEEEEEeeccCCccc
Q 006608 400 FARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 435 (639)
Q Consensus 400 f~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~ 435 (639)
|.+-++|.+||+.+||..|+|..|.|.++++.....
T Consensus 300 f~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 300 FAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred ecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 999999999999999999999999999999876543
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=4e-22 Score=213.45 Aligned_cols=165 Identities=27% Similarity=0.374 Sum_probs=136.2
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCC-eeEEEEe-ecCCCCCcccEEEEEEcccccHHHHHH-hc--CCccCCceeee
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGK-VRDVRLI-MDRNSRRSKGVGYVEFYDVMSVPMAIA-LS--GQPLLGQPVMV 321 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~~~i~-~d~~~~~~~g~afV~f~~~~~a~~al~-~~--~~~~~g~~l~v 321 (639)
..++|||+|||+++|+++|.+.|.+++. ++.+.++ .....+.++|||||+|.+.++|..|+. |+ ...+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999864 4444433 333456789999999999999999995 54 34678999999
Q ss_pred ccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccC--CCeEEEEeccCCCCCcceEEEEE
Q 006608 322 KPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPF--GTVELVQLPLDETGHCKGFGFVQ 399 (639)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~--G~i~~v~i~~~~~~~~~g~afVe 399 (639)
.++.+...... ......++|||+||+..+++++|+++|+.| |.|..|.+++ +||||+
T Consensus 217 dwA~p~~~~d~--------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVe 275 (578)
T TIGR01648 217 DWAEPEEEVDE--------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVH 275 (578)
T ss_pred Eeecccccccc--------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEE
Confidence 88765432111 111235789999999999999999999999 9999998764 499999
Q ss_pred ecCHHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 400 FARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 400 f~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
|.+.++|.+||+.||+..|+|+.|.|.|+.+..
T Consensus 276 F~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 276 FEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 999999999999999999999999999997654
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.6e-22 Score=198.14 Aligned_cols=166 Identities=28% Similarity=0.464 Sum_probs=141.6
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCc-eecC--eEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQL-EIVG--RAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~-~i~g--~~i~v 425 (639)
...-+|||+.||..++|.+|+++|++||.|.+|-|++| .++.++|+|||.|.+.++|.+|+.+|++. .|-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44678999999999999999999999999999999999 59999999999999999999999988765 4544 57888
Q ss_pred EeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccccccccc
Q 006608 426 SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVS 505 (639)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (639)
.|+.....+.
T Consensus 112 k~Ad~E~er~---------------------------------------------------------------------- 121 (510)
T KOG0144|consen 112 KYADGERERI---------------------------------------------------------------------- 121 (510)
T ss_pred cccchhhhcc----------------------------------------------------------------------
Confidence 8876544210
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEE
Q 006608 506 TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 585 (639)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~ 585 (639)
.....|||+-| +...+ +.+|+++|++||.|+.|.
T Consensus 122 ------------------------------------~~e~KLFvg~l--sK~~t--------e~evr~iFs~fG~Ied~~ 155 (510)
T KOG0144|consen 122 ------------------------------------VEERKLFVGML--SKQCT--------ENEVREIFSRFGHIEDCY 155 (510)
T ss_pred ------------------------------------ccchhhhhhhc--ccccc--------HHHHHHHHHhhCccchhh
Confidence 12348999999 55555 899999999999999999
Q ss_pred EecC----CCccEEEEecchHHHHHHHHHhcCcc-cCCe--EEEEEEcCchhh
Q 006608 586 VEKD----SAGFVYLRFENTQSAFAAQRALHGRW-FAGK--MITATFMVPQTY 631 (639)
Q Consensus 586 v~~~----~~g~afV~F~s~e~A~~A~~~lng~~-~~g~--~i~v~~~~~~~~ 631 (639)
|.++ ++|||||+|.+.+-|..|+++|||.. +.|+ +|.|.||+++.-
T Consensus 156 ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 156 ILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred heecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 8654 78999999999999999999999986 7766 899999987653
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=1e-21 Score=171.26 Aligned_cols=163 Identities=25% Similarity=0.425 Sum_probs=138.9
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
..+|||+||+..++++.|+++|-+.|+|..+.|+++ -++..+|||||+|.+.++|.-|++.||...|.|++|.|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 578999999999999999999999999999999999 5777899999999999999999999999999999999998762
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
......
T Consensus 89 ~~~nl~-------------------------------------------------------------------------- 94 (203)
T KOG0131|consen 89 HQKNLD-------------------------------------------------------------------------- 94 (203)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 221000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEE-EE---
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHI-FV--- 586 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v-~v--- 586 (639)
-+-.|||+||. .+.. +.-|.+.|+.||.+... .+
T Consensus 95 --------------------------------vganlfvgNLd--~~vD--------e~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 95 --------------------------------VGANLFVGNLD--PEVD--------EKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred --------------------------------ccccccccccC--cchh--------HHHHHHHHHhccccccCCccccc
Confidence 11289999993 2333 78899999999998762 32
Q ss_pred e--cCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchh
Q 006608 587 E--KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 630 (639)
Q Consensus 587 ~--~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~ 630 (639)
+ .+++||+||.|++.+.+.+|+..|||..+++++|.|+|+.-+.
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 2 3578999999999999999999999999999999999986543
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=182.18 Aligned_cols=149 Identities=29% Similarity=0.435 Sum_probs=137.5
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~ 327 (639)
-.|||||||..+++.+|+.+|++||.|+.|.|+++ ||||...+...|..|+. ||+..|.|..|.|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999954 99999999999999997 9999999999999876432
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHH
Q 006608 328 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDAR 407 (639)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~ 407 (639)
...+.+|+|+||.+.++.++|+..|++||+|.++.|+++ |+||.|.-.++|.
T Consensus 75 ---------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~ 126 (346)
T KOG0109|consen 75 ---------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAV 126 (346)
T ss_pred ---------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchH
Confidence 144789999999999999999999999999999999976 9999999999999
Q ss_pred HHHHHcCCceecCeEEEEEeeccCCc
Q 006608 408 NALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 408 ~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
.|+..|++.+|.|+.++|+.+.....
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred HHHhcccccccccceeeeeeeccccc
Confidence 99999999999999999999876643
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.83 E-value=2.4e-18 Score=165.70 Aligned_cols=324 Identities=15% Similarity=0.109 Sum_probs=212.7
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH---hcCCccCCceeeecc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA---LSGQPLLGQPVMVKP 323 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~---~~~~~~~g~~l~v~~ 323 (639)
++-.|.|.+|-..++|.+|.+.++.||+|..+.++. .+..|.|+|.+.+.|+.|+. -+...+.|++-.+++
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 455799999999999999999999999999888764 34589999999999999984 567788999988888
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEc--CCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEec
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVG--NLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFA 401 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~--nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~ 401 (639)
+..+....... ....+...|++. |--..+|.+-|..++.+.|.|..|.|.+. +|. .|+|||.
T Consensus 104 Stsq~i~R~g~------------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFd 167 (494)
T KOG1456|consen 104 STSQCIERPGD------------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFD 167 (494)
T ss_pred chhhhhccCCC------------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeec
Confidence 75443322211 112334555554 44567899999999999999999998876 443 5999999
Q ss_pred CHHHHHHHHHHcCCceec-C-eEEEEEeeccCCcccCCCCCCCCCCCCCCC-CCcccchhhHHHHHHHhhhcCCCcccCC
Q 006608 402 RLEDARNALNLNGQLEIV-G-RAIKVSAVTDQSGLQDLGANTTGDFDDDEG-GGLSLNARSRALLMQKLDRSGSATTIAG 478 (639)
Q Consensus 402 ~~~~A~~A~~~l~g~~i~-g-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (639)
+.+.|++|...|||.-|+ | +.|+|.|+++...+........+.+.-.+. +....+...-. ...+.......+.
T Consensus 168 sv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~----r~~~p~~~~~~ps 243 (494)
T KOG1456|consen 168 SVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYD----RQRQPAPLGYHPS 243 (494)
T ss_pred hhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCc----cccCCCccCCChh
Confidence 999999999999998775 4 579999998766543333322222222111 00000000000 0000000000000
Q ss_pred CCCCCcccCCCCCCCCcccccccccccccCCCCCCC-CCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCC
Q 006608 479 SAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQG-TVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKN 557 (639)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~ 557 (639)
.++. +...+.......++.+++..+ .+...+ .....| ....+.+++.|.+|.-...
T Consensus 244 s~~G-----------~h~~y~sg~~~~p~~~~P~r~~~~~~~~----~g~a~p--------~g~~~g~VmMVyGLdh~k~ 300 (494)
T KOG1456|consen 244 SRGG-----------GHSGYYSGDRHGPPHPPPSRYRDGYRDG----RGYASP--------GGGAPGCVMMVYGLDHGKM 300 (494)
T ss_pred hcCC-----------CCCCCcccccCCCCCCCCCCCccccccC----CCCCCC--------CCCCCCcEEEEEecccccc
Confidence 1100 001111111122222222221 111100 001111 2245788999999932222
Q ss_pred CCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 558 ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 558 ~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
. .+-|+.+|-.||+|..|++++-..|.|+|++.+..+-++|+..||+..+-|.+|.|.+...
T Consensus 301 N---------~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 301 N---------CDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred c---------hhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 1 4889999999999999999998899999999999999999999999999999999987554
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1.9e-20 Score=174.75 Aligned_cols=147 Identities=25% Similarity=0.422 Sum_probs=133.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
.+|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||...+...|..||..|||..|.|..|.|.-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999999999999999999999999999976 99999999999999999999999999999999876553
Q ss_pred cccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCC
Q 006608 433 GLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLV 512 (639)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (639)
.
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCc
Q 006608 513 QGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAG 592 (639)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g 592 (639)
.+.+|+|.||. .+.+ ..+|+..|.+||.|+.+.|.+ +
T Consensus 77 ------------------------------~stkl~vgNis--~tct--------n~ElRa~fe~ygpviecdivk---d 113 (346)
T KOG0109|consen 77 ------------------------------ASTKLHVGNIS--PTCT--------NQELRAKFEKYGPVIECDIVK---D 113 (346)
T ss_pred ------------------------------CccccccCCCC--cccc--------CHHHhhhhcccCCceeeeeec---c
Confidence 44589999994 4444 689999999999999999965 6
Q ss_pred cEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 593 FVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 593 ~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
++||.|+-.++|..|+..|+|+.|.|+.++|.+.+-
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 999999999999999999999999999999998653
No 40
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.83 E-value=3.7e-19 Score=170.37 Aligned_cols=212 Identities=24% Similarity=0.370 Sum_probs=160.9
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeE--------EEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--------LVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 421 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~--------~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~ 421 (639)
.....|||.|||.++|.+++.++|.+||.|. .|.|..+..|..+|-|++.|...+++.-|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456799999999999999999999999874 57888888899999999999999999999999999999999
Q ss_pred EEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccccc
Q 006608 422 AIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAA 501 (639)
Q Consensus 422 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (639)
.|.|..|..........+... -...+....+.+++........
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~----------k~k~~~~kk~~k~q~k~~dw~p--------------------------- 254 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKE----------KGKCKDKKKLKKQQQKLLDWRP--------------------------- 254 (382)
T ss_pred EEEEehhhhhhccCcCccccc----------ccccccHHHHHHHHHhhcccCC---------------------------
Confidence 999999886654222211110 0001112222222222111100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCC-chhhHhhHHHHHHHHhhhcCc
Q 006608 502 SAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNET-YEEFDMDIKEDVEGECSKFGK 580 (639)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~-~~~~~~~~~~dl~~~f~~~G~ 580 (639)
.- .-+......++|+|+|||+|.... +++...+|.+||.+.|.+||.
T Consensus 255 -----------------------------d~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~ 302 (382)
T KOG1548|consen 255 -----------------------------DR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQ 302 (382)
T ss_pred -----------------------------Cc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 00 001112356699999999998644 457889999999999999999
Q ss_pred EEEEEE-ecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchh
Q 006608 581 LKHIFV-EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 630 (639)
Q Consensus 581 V~~v~v-~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~ 630 (639)
|.+|.| .+.+.|.+-|.|.+.++|..|++.|+|+.|+|+.|..+.-...+
T Consensus 303 v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 303 VRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred cceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 999988 56788999999999999999999999999999999998755443
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=3.9e-19 Score=163.71 Aligned_cols=271 Identities=23% Similarity=0.320 Sum_probs=162.1
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCc-eecC--eEEEEEe
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL-EIVG--RAIKVSA 427 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~-~i~g--~~i~v~~ 427 (639)
..++|||+-|...-.|++++.+|.+||.|.+|.+.....|.++|++||+|.+..+|+.||..|+|. .+-| ..|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 368999999999999999999999999999999999999999999999999999999999999985 3444 5799999
Q ss_pred eccCCcccCCC---------CC--CCCCCCCCC------------------CCCccc---chhhHHHHHHHhhhcCCCcc
Q 006608 428 VTDQSGLQDLG---------AN--TTGDFDDDE------------------GGGLSL---NARSRALLMQKLDRSGSATT 475 (639)
Q Consensus 428 ~~~~~~~~~~~---------~~--~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~ 475 (639)
+....++.... .. ....+.... +..+.. ......+.+..+...+...+
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 98766531110 00 111111110 000111 11111122222221111100
Q ss_pred ----cCCCCCCCcccCCCCCCCCccc-ccc----------cccccccCC-------CCCC---------------CCCCC
Q 006608 476 ----IAGSAVTPAVNSTALPLPTAPL-LGA----------ASAVSTLVP-------PLVQ---------------GTVPT 518 (639)
Q Consensus 476 ----~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~-------~~~~---------------~~~~~ 518 (639)
..+....+......++....+. ... .++.....+ .... +....
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0011111111111111111100 000 000000000 0000 00000
Q ss_pred CC--CCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEe-----cCCC
Q 006608 519 HP--GQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE-----KDSA 591 (639)
Q Consensus 519 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~-----~~~~ 591 (639)
+. .........++...+.....++..|+|||..| |-+.. ..+|..+|-.||.|++.+|- ..++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL--PQEFg--------DaEliQmF~PFGhivSaKVFvDRATNQSK 327 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL--PQEFG--------DAELIQMFLPFGHIVSAKVFVDRATNQSK 327 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC--chhhc--------cHHHHHHhccccceeeeeeeehhcccccc
Confidence 00 00011122223333333446889999999999 76666 47899999999999998762 2378
Q ss_pred ccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 592 GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 592 g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
.|+||.|+|+.+|+.||.+|||..|+=+.|+|.+--++.-
T Consensus 328 CFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 328 CFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred ceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999999999998766553
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=7.8e-20 Score=190.56 Aligned_cols=174 Identities=26% Similarity=0.469 Sum_probs=148.5
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS---RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~---~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+|||.||++.+|.++|...|...|.|..+.|.+.+.. -.+.|||||+|.+.++|+.|+. |+|+.|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988876542 2377999999999999999997 9999999999999988
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCH
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~ 403 (639)
...+... .+..-+.......|+|.|||+.++..+|+++|..||.|..|.|++. ..+.++|||||+|.++
T Consensus 596 ~~k~~~~----------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 596 ENKPAST----------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred cCccccc----------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 6111100 0012222334689999999999999999999999999999999988 5666799999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 404 EDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
.+|.+|+.+|.+..|+|+.|.+.|+....
T Consensus 666 ~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999999988665
No 43
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.80 E-value=1.6e-17 Score=166.71 Aligned_cols=172 Identities=24% Similarity=0.299 Sum_probs=135.8
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
....|.+.+|||.+|+++|.+||+.++ |.++.+. ..+|+..|-|||+|.+.+++++||+.+...+..+-|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 446788999999999999999999985 5664444 4568999999999999999999999999999999999976654
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE-EEeccCCCCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLDETGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~-v~i~~~~~~~~~g~afVef~~~~~ 405 (639)
............ . ...+..+|-|.+||+.|++++|.++|+..-.|.. |.|+.+..+.+.|-|||+|.+.+.
T Consensus 86 ~e~d~~~~~~g~------~--s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 86 AEADWVMRPGGP------N--SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccccccCCCC------C--CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 333221111110 0 1144678999999999999999999998766644 677888888899999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEeecc
Q 006608 406 ARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
|++||.... ..|+.+-|.|-.+.-
T Consensus 158 ae~Al~rhr-e~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 158 AEIALGRHR-ENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHHHHHHH-HhhccceEEeehhHH
Confidence 999998543 568888888876643
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=3.2e-19 Score=176.14 Aligned_cols=179 Identities=23% Similarity=0.405 Sum_probs=156.6
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
+.++||||+|+|.++++.|++.|.+||.|.+|.+++|+.+++++||+||+|.+.+.+.++|....+.|.|+.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999999888999999999877654
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~ 405 (639)
......... .....+|||++||..++++++++.|++||.|..+.++.+ .+...+||+||.|.+.+.
T Consensus 85 r~~~~~~~~-------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 85 REDQTKVGR-------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred ccccccccc-------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 332221111 124679999999999999999999999999999988888 688899999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEeeccCCcccCCCC
Q 006608 406 ARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGA 439 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~ 439 (639)
+.+++. +.-+.|+|++|.|..+.++..+.....
T Consensus 152 Vdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~~~ 184 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNGKKVEVKRAIPKEVMQSTKS 184 (311)
T ss_pred cceecc-cceeeecCceeeEeeccchhhcccccc
Confidence 999886 555789999999999998887665543
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=1.4e-17 Score=162.46 Aligned_cols=288 Identities=18% Similarity=0.248 Sum_probs=199.0
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccE-EEEEEcccccHHHHHH-hcCCccCC--ceeeeccc
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGV-GYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVKPS 324 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~-afV~f~~~~~a~~al~-~~~~~~~g--~~l~v~~~ 324 (639)
-.++|+++-+.++-+-|..+|+.||.|..|.-... +.|| |.|+|.+.+.|+.|-. |+|..|.. ..|+|.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 45789999999999999999999999998876633 3455 8999999999999985 99988743 45666544
Q ss_pred hhhhhhhc---------cccccC-----------------------C-----CCC-----CCCCCCCCC--CceEEEcCC
Q 006608 325 EAEKNLVQ---------SNSSIA-----------------------G-----ASG-----GGTGPYSGG--ARRLYVGNL 360 (639)
Q Consensus 325 ~~~~~~~~---------~~~~~~-----------------------~-----~~~-----~~~~~~~~~--~~~l~v~nl 360 (639)
.-....+. ...... + .++ ...+....+ ...|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 31110000 000000 0 000 000111111 478888888
Q ss_pred C-CcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCC
Q 006608 361 H-FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGA 439 (639)
Q Consensus 361 p-~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~ 439 (639)
- ..+|.+.|..+|.-||.|..|+|..++. -.|+|+|.+...|.-|++.|+|..|.|+.|+|.+++....+.....
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~eg 381 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREG 381 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCC
Confidence 5 5689999999999999999999988732 2699999999999999999999999999999999876553222111
Q ss_pred CCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCC
Q 006608 440 NTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTH 519 (639)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (639)
....++.-+. + ..+-..
T Consensus 382 q~d~glT~dy-------------------------------~--~spLhr------------------------------ 398 (492)
T KOG1190|consen 382 QEDQGLTKDY-------------------------------G--NSPLHR------------------------------ 398 (492)
T ss_pred CccccccccC-------------------------------C--CCchhh------------------------------
Confidence 0000000000 0 000000
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEE-EEEecCCCccEEEEe
Q 006608 520 PGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVEKDSAGFVYLRF 598 (639)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~-v~v~~~~~g~afV~F 598 (639)
..+|+. ..+.+..+|+.+|.+.|+ |...+ +++|+.+|..-|.++. .++-...+..|++++
T Consensus 399 -------fkkpgs--KN~~ni~PpsatlHlsni--p~svs--------ee~lk~~f~~~g~~vkafkff~kd~kmal~q~ 459 (492)
T KOG1190|consen 399 -------FKKPGS--KNYQNIFPPSATLHLSNI--PPSVS--------EEDLKNLFQEPGGQVKAFKFFQKDRKMALPQL 459 (492)
T ss_pred -------ccCccc--ccccccCCchhheeeccC--Ccccc--------hhHHHHhhhcCCceEEeeeecCCCcceeeccc
Confidence 001111 112334567889999999 55555 8999999999887655 455454678999999
Q ss_pred cchHHHHHHHHHhcCcccCCe-EEEEEEcC
Q 006608 599 ENTQSAFAAQRALHGRWFAGK-MITATFMV 627 (639)
Q Consensus 599 ~s~e~A~~A~~~lng~~~~g~-~i~v~~~~ 627 (639)
+++|+|..|+..||...+++. .|+|+|-.
T Consensus 460 ~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 460 ESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CChhHhhhhccccccccCCCCceEEEEeec
Confidence 999999999999999999866 99999854
No 46
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.2e-18 Score=176.83 Aligned_cols=152 Identities=26% Similarity=0.414 Sum_probs=135.9
Q ss_pred eEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
.|||+ +.+++.+|.++|+++|+|..|++..+. + +.|||||.|.++.+|.+||..||...|.|++|.|.|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 58888 889999999999999999999999998 5 999999999999999999999999999999999999643320
Q ss_pred ccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCC
Q 006608 434 LQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQ 513 (639)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (639)
T Consensus 78 -------------------------------------------------------------------------------- 77 (369)
T KOG0123|consen 78 -------------------------------------------------------------------------------- 77 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC---C
Q 006608 514 GTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---S 590 (639)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~---~ 590 (639)
.|||+|| +..++ ..+|.++|+.||+|++|+|..+ +
T Consensus 78 --------------------------------~~~i~nl--~~~~~--------~~~~~d~f~~~g~ilS~kv~~~~~g~ 115 (369)
T KOG0123|consen 78 --------------------------------LVFIKNL--DESID--------NKSLYDTFSEFGNILSCKVATDENGS 115 (369)
T ss_pred --------------------------------eeeecCC--CcccC--------cHHHHHHHHhhcCeeEEEEEEcCCCc
Confidence 2999999 65555 6899999999999999999543 6
Q ss_pred CccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcc
Q 006608 591 AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 591 ~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~ 633 (639)
+|+ ||+|++.++|.+|+..|||..+.|+.|.|..+..+....
T Consensus 116 kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 116 KGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 788 999999999999999999999999999999988766543
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.7e-18 Score=159.48 Aligned_cols=185 Identities=24% Similarity=0.394 Sum_probs=147.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCc-cCC--ceeeec
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQP-LLG--QPVMVK 322 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~-~~g--~~l~v~ 322 (639)
+.++||||.|...-.|+|++.+|..||.|..|.+...+. |.+||||||.|.+.-+|..||. |||.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 668999999999999999999999999999999998876 7899999999999999999996 88754 444 566777
Q ss_pred cchhhhhhhc---------------------------------------cc--c--------------------------
Q 006608 323 PSEAEKNLVQ---------------------------------------SN--S-------------------------- 335 (639)
Q Consensus 323 ~~~~~~~~~~---------------------------------------~~--~-------------------------- 335 (639)
+++..+.... .. .
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 6543320000 00 0
Q ss_pred -----ccC-------------------CCCC-------------------------------------------------
Q 006608 336 -----SIA-------------------GASG------------------------------------------------- 342 (639)
Q Consensus 336 -----~~~-------------------~~~~------------------------------------------------- 342 (639)
... +..+
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 000 0000
Q ss_pred ----------C---------CCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecC
Q 006608 343 ----------G---------GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFAR 402 (639)
Q Consensus 343 ----------~---------~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~ 402 (639)
. .........+.|||..||......+|.++|-+||.|...++..+ .|+.+++|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0 00001223589999999999999999999999999999998888 699999999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 403 LEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 403 ~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
+.+|+.||..|||+.|+-+.|+|..-.++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999998866554
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.1e-17 Score=160.56 Aligned_cols=173 Identities=24% Similarity=0.417 Sum_probs=141.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.+.|||+.|.+.+.|+.|+..|.+||+|..|.|..+ -+++++|||||+|.-++.|+-|++.|||..++|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 578999999999999999999999999999999988 5999999999999999999999999999999999999884221
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
.. . ++..-.+.+.-+
T Consensus 193 mp----------------------Q-AQpiID~vqeeA------------------------------------------ 207 (544)
T KOG0124|consen 193 MP----------------------Q-AQPIIDMVQEEA------------------------------------------ 207 (544)
T ss_pred Cc----------------------c-cchHHHHHHHHH------------------------------------------
Confidence 11 0 111111111110
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~- 589 (639)
..-..|||..+ -..++ ++||+..|+-||.|++|.+-..
T Consensus 208 -------------------------------k~fnRiYVaSv--HpDLS--------e~DiKSVFEAFG~I~~C~LAr~p 246 (544)
T KOG0124|consen 208 -------------------------------KKFNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARAP 246 (544)
T ss_pred -------------------------------HhhheEEeeec--CCCcc--------HHHHHHHHHhhcceeeEEeeccC
Confidence 01227889888 44555 7999999999999999999443
Q ss_pred ----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchh
Q 006608 590 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 630 (639)
Q Consensus 590 ----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~ 630 (639)
.+||+||+|.+.+.-..|+..||-.-++|.-|+|--+....
T Consensus 247 t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 247 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred CCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 57999999999999999999999999999999997765443
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=3.5e-16 Score=142.91 Aligned_cols=207 Identities=22% Similarity=0.326 Sum_probs=146.0
Q ss_pred CCceEEEcCCCCcCCHHHHHH----HhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 351 GARRLYVGNLHFNMTEDQLRQ----VFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~----~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
+..+|||.||+..+..++|+. +|+.||.|..|...+. ...+|-|||.|.+.+.|..|+.+|+|+.|.|+++.|.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 345999999999999998888 9999999999988764 5568999999999999999999999999999999999
Q ss_pred eeccCCcccCCCCCCCCCCCCCCC-CCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccccccccc
Q 006608 427 AVTDQSGLQDLGANTTGDFDDDEG-GGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVS 505 (639)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (639)
|+..+......... .+-..+. .... . +... ..+...... +..
T Consensus 86 yA~s~sdii~~~~~---~~v~~~~k~~~~--------~---~~~~----------~~~~~~ng~-----------~~~-- 128 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPG---TFVEKEKKINGE--------I---LARI----------KQPLDTNGH-----------FYN-- 128 (221)
T ss_pred cccCccchhhccCc---eeccccCccccc--------c---cccc----------CCccccccc-----------ccc--
Confidence 99988753222110 0000000 0000 0 0000 000000000 000
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEE
Q 006608 506 TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 585 (639)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~ 585 (639)
+.....+.|. ......+..+||+.|| |.+++ .+-+..+|..|.....|.
T Consensus 129 ----------------~~~~~~p~p~-----~~~~~ppn~ilf~~ni--P~es~--------~e~l~~lf~qf~g~keir 177 (221)
T KOG4206|consen 129 ----------------MNRMNLPPPF-----LAQMAPPNNILFLTNI--PSESE--------SEMLSDLFEQFPGFKEIR 177 (221)
T ss_pred ----------------cccccCCCCc-----cccCCCCceEEEEecC--Ccchh--------HHHHHHHHhhCcccceeE
Confidence 0000000000 0222457779999999 76665 788999999999999999
Q ss_pred EecCCCccEEEEecchHHHHHHHHHhcCcccC-CeEEEEEEcC
Q 006608 586 VEKDSAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMV 627 (639)
Q Consensus 586 v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~-g~~i~v~~~~ 627 (639)
+...-.+.|||+|.+.-.|..|...|+|..+- ..++.|.|+.
T Consensus 178 ~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 178 LIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred eccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 87877899999999999999999999999987 8899998874
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.70 E-value=1e-14 Score=140.96 Aligned_cols=295 Identities=19% Similarity=0.194 Sum_probs=199.1
Q ss_pred ccccceeeccc--cccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC--ceeee
Q 006608 247 DQRTVFAYQIC--LKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMV 321 (639)
Q Consensus 247 ~~~~l~v~nLp--~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g--~~l~v 321 (639)
+...|.+.=|. +.||.+-|..+....|+|..|.|++. .---|.|+|.+.+.|++|.+ |||..|.. ..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 44455555444 45999999999999999999999864 12269999999999999997 99988743 68888
Q ss_pred ccchhhhhhhcccccc-----------------------------------CCC--------------------------
Q 006608 322 KPSEAEKNLVQSNSSI-----------------------------------AGA-------------------------- 340 (639)
Q Consensus 322 ~~~~~~~~~~~~~~~~-----------------------------------~~~-------------------------- 340 (639)
.++.+....+..+... .+.
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 8776554221111000 000
Q ss_pred --CCCCCCCCCCCCceEEEcCCCCc-CCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCce
Q 006608 341 --SGGGTGPYSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLE 417 (639)
Q Consensus 341 --~~~~~~~~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~ 417 (639)
.+........+...++|.+|... ++.+.|.++|..||.|..|.+++.+.| .|+||+.+....+.|+..||+..
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g----tamVemgd~~aver~v~hLnn~~ 349 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG----TAMVEMGDAYAVERAVTHLNNIP 349 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc----eeEEEcCcHHHHHHHHHHhccCc
Confidence 00001122345688999999765 688999999999999999999988654 79999999999999999999999
Q ss_pred ecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccc
Q 006608 418 IVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPL 497 (639)
Q Consensus 418 i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (639)
+.|..|.|.+++....... .+..+++.. ..-..+....+..
T Consensus 350 lfG~kl~v~~SkQ~~v~~~----~pflLpDgS-----------------------------------pSfKdys~SkNnR 390 (494)
T KOG1456|consen 350 LFGGKLNVCVSKQNFVSPV----QPFLLPDGS-----------------------------------PSFKDYSGSKNNR 390 (494)
T ss_pred cccceEEEeeccccccccC----CceecCCCC-----------------------------------cchhhcccccccc
Confidence 9999999998765542111 011110000 0000111111111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhh
Q 006608 498 LGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSK 577 (639)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~ 577 (639)
+..+..++ -+-...|+++|...|. |-.+| ++.|.++|..
T Consensus 391 Fssp~qAs-------------------------------KNrIq~Ps~vLHffNa--P~~vt--------Ee~l~~i~ne 429 (494)
T KOG1456|consen 391 FSSPEQAS-------------------------------KNRIQPPSNVLHFFNA--PLGVT--------EEQLIGICNE 429 (494)
T ss_pred cCChhHhh-------------------------------cccccCCcceeEEecC--CCccC--------HHHHHHHhhh
Confidence 11000000 1112458889999999 77777 8899999987
Q ss_pred cCcE-EEEEE-e-cC-CCccEEEEecchHHHHHHHHHhcCcccCCe------EEEEEEcCchh
Q 006608 578 FGKL-KHIFV-E-KD-SAGFVYLRFENTQSAFAAQRALHGRWFAGK------MITATFMVPQT 630 (639)
Q Consensus 578 ~G~V-~~v~v-~-~~-~~g~afV~F~s~e~A~~A~~~lng~~~~g~------~i~v~~~~~~~ 630 (639)
.+.. ++|+| + +. -...+.++|++.++|..||..||...+.+. +|++.|.+..-
T Consensus 430 k~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 430 KDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSKH 492 (494)
T ss_pred cCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccccc
Confidence 7653 45555 1 11 234679999999999999999999998753 67777776543
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.1e-16 Score=136.31 Aligned_cols=173 Identities=20% Similarity=0.299 Sum_probs=133.4
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++|||||||.+|-+.+|.++|-+||.|..|.|..-+ ...+||||+|.++.+|+.||. .+|..+.|..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 456899999999999999999999999999999986433 357899999999999999997 9999999999999987
Q ss_pred hhhhhhhccccccC-CC-----C-CCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEE
Q 006608 325 EAEKNLVQSNSSIA-GA-----S-GGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGF 397 (639)
Q Consensus 325 ~~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~af 397 (639)
..-.........-. +. . .....+.......|+|.+||+..+.++|+....+.|.|....+.++ |.+.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~Gv 154 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGV 154 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------ccee
Confidence 64331111111000 00 0 0111233344568999999999999999999999999988888776 4789
Q ss_pred EEecCHHHHHHHHHHcCCceec--CeEEEEEe
Q 006608 398 VQFARLEDARNALNLNGQLEIV--GRAIKVSA 427 (639)
Q Consensus 398 Vef~~~~~A~~A~~~l~g~~i~--g~~i~v~~ 427 (639)
|+|...++.+-|+..|....+. |-...|..
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 9999999999999888765553 44444443
No 52
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=6e-16 Score=149.81 Aligned_cols=297 Identities=21% Similarity=0.217 Sum_probs=200.7
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
+...|...+|||..+..+|..||.-.....-...++.-.-|...|.|.|.|.+.+.-..|++.+.+.+.++.|.|-.+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 44456788999999999999999876544444444444447788999999999999999999999999999999966655
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccC----CCeEEEEeccCCCCCcceEEEEEecC
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPF----GTVELVQLPLDETGHCKGFGFVQFAR 402 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~----G~i~~v~i~~~~~~~~~g~afVef~~ 402 (639)
........... .....-......-.|-+.+||+++++.+|.++|.+. |....|.++....|...|-|||.|..
T Consensus 139 e~f~~iagg~s---~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 139 EEFLKIAGGTS---NEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC 215 (508)
T ss_pred hhheEecCCcc---ccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC
Confidence 44433322111 111111122345678889999999999999999743 34567777777889999999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCC
Q 006608 403 LEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 482 (639)
Q Consensus 403 ~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (639)
+++|+.||.+.. ..|+.+-|.+-.++. ++..+-+..... ....++.+.
T Consensus 216 ee~aq~aL~khr-q~iGqRYIElFRSTa------------------------------aEvqqvlnr~~s-~pLi~~~~s 263 (508)
T KOG1365|consen 216 EEDAQFALRKHR-QNIGQRYIELFRSTA------------------------------AEVQQVLNREVS-EPLIPGLTS 263 (508)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHhH------------------------------HHHHHHHHhhcc-ccccCCCCC
Confidence 999999997553 334444454433221 112222211110 000011000
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchh
Q 006608 483 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEE 562 (639)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~ 562 (639)
+..+.. +.... +......||.+.+| |++++
T Consensus 264 p~~p~~------------------------------------p~~~~---------p~~~~kdcvRLRGL--Py~At--- 293 (508)
T KOG1365|consen 264 PLLPGG------------------------------------PARLV---------PPTRSKDCVRLRGL--PYEAT--- 293 (508)
T ss_pred CCCCCC------------------------------------ccccC---------CCCCCCCeeEecCC--Chhhh---
Confidence 000000 00000 11224669999999 88777
Q ss_pred hHhhHHHHHHHHhhhcCcEEE---EEEe----cCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcc
Q 006608 563 FDMDIKEDVEGECSKFGKLKH---IFVE----KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 563 ~~~~~~~dl~~~f~~~G~V~~---v~v~----~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~ 633 (639)
.+||.++|..|-.-+. |++. ..+.|.|||+|.+.|.|..|..+-+.+..+++-|.|--+.-++++.
T Consensus 294 -----vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 294 -----VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred -----HHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 8999999999976332 4442 2356899999999999999999999988889999998888888773
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=6.4e-16 Score=159.98 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=148.5
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
....++|++||..+++..+.+++..||.+....++.+..+|.++||||.+|.++.-+..|++ |||+.+.+..|.|+.+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45779999999999999999999999999999999999999999999999999999999998 99999999999998776
Q ss_pred hhhhhhccccc-----cCCCCCCCCCCCCCCCceEEEcCCCCc--C-CH-------HHHHHHhccCCCeEEEEeccC-CC
Q 006608 326 AEKNLVQSNSS-----IAGASGGGTGPYSGGARRLYVGNLHFN--M-TE-------DQLRQVFEPFGTVELVQLPLD-ET 389 (639)
Q Consensus 326 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~v~nlp~~--~-~e-------~~l~~~f~~~G~i~~v~i~~~-~~ 389 (639)
........... ..+...........++.+|++.|+-.. + .+ ++|+..|.+||.|..|.|+.. ..
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 54443333222 111111222445567788888887321 1 11 566677889999999999887 43
Q ss_pred C---CcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 390 G---HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 390 ~---~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
+ ...|.+||+|.+.++++.|++.|+|..|+++.|.+.|....
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 2 34789999999999999999999999999999999886543
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.68 E-value=1.3e-15 Score=139.15 Aligned_cols=176 Identities=18% Similarity=0.344 Sum_probs=142.3
Q ss_pred ccccceeeccccccCHhHHHH----HHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 247 DQRTVFAYQICLKADERDVYE----FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~----~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
+..||||.||+..+..++|+. +|++||.|.+|.... |...+|-|||.|.+.+.|..|+. |+|+.+.|++|+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999888 999999999999874 45689999999999999999995 9999999999999
Q ss_pred ccchhhhhhhcccccc---------------------C-CC-----CCCCC----CCCCCCCceEEEcCCCCcCCHHHHH
Q 006608 322 KPSEAEKNLVQSNSSI---------------------A-GA-----SGGGT----GPYSGGARRLYVGNLHFNMTEDQLR 370 (639)
Q Consensus 322 ~~~~~~~~~~~~~~~~---------------------~-~~-----~~~~~----~~~~~~~~~l~v~nlp~~~~e~~l~ 370 (639)
+|+..+.......... . +. ..... .....+..+|++.|||..++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 9987544332221100 0 00 00000 2235678899999999999999999
Q ss_pred HHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec-CeEEEEEeec
Q 006608 371 QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVT 429 (639)
Q Consensus 371 ~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~-g~~i~v~~~~ 429 (639)
.+|+.|.....|.++... .++|||+|.+...|..|.+.+.|..|- ..++.|.++.
T Consensus 165 ~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999988652 458999999999999999999998886 7788887753
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.63 E-value=1e-14 Score=131.54 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=134.6
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC--CCCCcceEEEEEecCHHHHHHHHHHcCCceec---CeEEEEE
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD--ETGHCKGFGFVQFARLEDARNALNLNGQLEIV---GRAIKVS 426 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~--~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~---g~~i~v~ 426 (639)
-++|||.+||.++...+|+.+|..|-..+...|... .....+-+|||.|.+...|..|+.+|||+.|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999876666655444 22334679999999999999999999999997 7899999
Q ss_pred eeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccc
Q 006608 427 AVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVST 506 (639)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (639)
+++............+.+ .. ..+........+......+-......+... ..+.....+..+.........++
T Consensus 114 lAKSNtK~kr~k~sgtP~-~s---~al~~~~~~~~qr~sa~~qhd~~l~~p~~l---~~~~~a~al~~~~~t~~~~l~a~ 186 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPG-SS---PALVIDNRNKEQRKSADDQHDEGLSDPDEL---QEPGNADALKENDTTKSEALSAP 186 (284)
T ss_pred ehhcCcccccCCCCCCCC-CC---ccccccccChhhcccchhhccccccCcccc---CCccccccCCCccccchhhhhhh
Confidence 998877654432211111 00 011111101000001111100000000000 00000000000000000000000
Q ss_pred cCCCCCCCCCCCCCCCCCccccCCCCCCC-CCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEE
Q 006608 507 LVPPLVQGTVPTHPGQLGTALQVPTASVP-IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 585 (639)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~ 585 (639)
+. ..+.... ..... ........+.+|||.||. .+.+ +++|+.+|+.|..+..++
T Consensus 187 ----~~-----~~P~a~a------~l~ks~q~~~~~~acstlfianl~--~~~~--------ed~l~~~~~~~~gf~~l~ 241 (284)
T KOG1457|consen 187 ----DS-----KAPSANA------HLEKSSQGGSGARACSTLFIANLG--PNCT--------EDELKQLLSRYPGFHILK 241 (284)
T ss_pred ----hh-----cCCcccc------hhhhhhcccccchhhhhHhhhccC--CCCC--------HHHHHHHHHhCCCceEEE
Confidence 00 0000000 00000 011123356799999994 4444 899999999999988888
Q ss_pred E-ecCCCccEEEEecchHHHHHHHHHhcCccc
Q 006608 586 V-EKDSAGFVYLRFENTQSAFAAQRALHGRWF 616 (639)
Q Consensus 586 v-~~~~~g~afV~F~s~e~A~~A~~~lng~~~ 616 (639)
| .+++...|||+|++.+.|..|+..|+|..+
T Consensus 242 ~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 242 IRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred EecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 8 455677889999999999999999999776
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.7e-14 Score=123.49 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=135.9
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...+.|||+|||..+-+.+|..+|.+||.|..|.|....- ...||||+|.++-+|..||..-+|..++|+.|.|.|+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 3468999999999999999999999999999998865422 24599999999999999999999999999999999976
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
..-....... ...++ +.+ | .+.....
T Consensus 82 ggr~s~~~~G-------~y~gg---------------------------grg-----------------G-gg~gg~r-- 107 (241)
T KOG0105|consen 82 GGRSSSDRRG-------SYSGG---------------------------GRG-----------------G-GGGGGRR-- 107 (241)
T ss_pred CCCccccccc-------ccCCC---------------------------CCC-----------------C-CCCCccc--
Confidence 4431100000 00000 000 0 0000000
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~ 589 (639)
.++.--..-.|+|.+| |...+ ++||++++.+-|.|....+.++
T Consensus 108 ---------------------------gppsrrSe~RVvVsGL--p~SgS--------WQDLKDHmReaGdvCfadv~rD 150 (241)
T KOG0105|consen 108 ---------------------------GPPSRRSEYRVVVSGL--PPSGS--------WQDLKDHMREAGDVCFADVQRD 150 (241)
T ss_pred ---------------------------CCcccccceeEEEecC--CCCCc--------hHHHHHHHHhhCCeeeeeeecc
Confidence 0000112237899999 65555 8999999999999999988776
Q ss_pred CCccEEEEecchHHHHHHHHHhcCcccC--CeEEEEEEcCchhh
Q 006608 590 SAGFVYLRFENTQSAFAAQRALHGRWFA--GKMITATFMVPQTY 631 (639)
Q Consensus 590 ~~g~afV~F~s~e~A~~A~~~lng~~~~--g~~i~v~~~~~~~~ 631 (639)
|.+.|+|...|+..-|+..|....|. |-+..+.+...+..
T Consensus 151 --g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 151 --GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred --cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 48899999999999999999988874 77777777666544
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.59 E-value=4.9e-14 Score=135.56 Aligned_cols=182 Identities=20% Similarity=0.248 Sum_probs=141.1
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCce
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVR--------DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP 318 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~--------~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~ 318 (639)
...|||.|||.++|.+++.++|++||.|. .|.|..+.. |.-+|=|.+.|...+++..|+. |++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 34599999999999999999999999876 478888877 8999999999999999999998 9999999999
Q ss_pred eeeccchhhhh------------------hhccccccCCCC-CCCCCCCCCCCceEEEcCCCCc----CC-------HHH
Q 006608 319 VMVKPSEAEKN------------------LVQSNSSIAGAS-GGGTGPYSGGARRLYVGNLHFN----MT-------EDQ 368 (639)
Q Consensus 319 l~v~~~~~~~~------------------~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nlp~~----~~-------e~~ 368 (639)
|.|+.+.-+.. .......+..-. ...........++|.|.||... .+ .++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99976542221 000111111101 1112233455688999999653 22 367
Q ss_pred HHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 369 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 369 l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
|.+.+++||.|..|.|.-. ++.|.+.|.|.+.+.|..||+.|+|.+|+|++|.+........
T Consensus 293 l~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 7788999999999988754 3467899999999999999999999999999999998766553
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=7e-15 Score=131.32 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=77.6
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++|||+|||+++|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|++||+ |++..|.|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345789999999999999999999999999999999999999999999999999999999996 9999999999999987
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
....
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 6543
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.2e-15 Score=136.59 Aligned_cols=162 Identities=31% Similarity=0.447 Sum_probs=129.1
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~ 327 (639)
..||||+||+.+.+.+|..||..||.|.+|.|. .||+||+|.+..+|..|+- +++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999999886 4699999999999999995 9999999988888777643
Q ss_pred hhhhccccccCCCC-CCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHH
Q 006608 328 KNLVQSNSSIAGAS-GGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 406 (639)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A 406 (639)
.............. .............|+|.+++..+.+++|...|.++|.+....+. .+++||+|.+.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhh
Confidence 32220000000000 01112234556789999999999999999999999998544442 45899999999999
Q ss_pred HHHHHHcCCceecCeEEEE
Q 006608 407 RNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 407 ~~A~~~l~g~~i~g~~i~v 425 (639)
..|+..|++..+.++.|.+
T Consensus 147 ~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhcchhccchhhcCceeee
Confidence 9999999999999999999
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=4.8e-14 Score=125.93 Aligned_cols=84 Identities=32% Similarity=0.563 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|++..|+|+.|.|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 355779999999999999999999999999999999988 5889999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.52 E-value=4.1e-14 Score=140.02 Aligned_cols=171 Identities=25% Similarity=0.459 Sum_probs=143.2
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
..++|||++|.+.++++.|++.|..||+|..+.+.++ .++.++||+||+|.+++....+|..-. +.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-cccCCccccceecc
Confidence 4689999999999999999999999999999999999 689999999999999999998887443 67899999988876
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
..........
T Consensus 84 ~r~~~~~~~~---------------------------------------------------------------------- 93 (311)
T KOG4205|consen 84 SREDQTKVGR---------------------------------------------------------------------- 93 (311)
T ss_pred Cccccccccc----------------------------------------------------------------------
Confidence 6553211110
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec-
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK- 588 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~- 588 (639)
...+..|||.+| |..++ ++++++.|.+||.|..+.++.
T Consensus 94 -------------------------------~~~tkkiFvGG~--~~~~~--------e~~~r~yfe~~g~v~~~~~~~d 132 (311)
T KOG4205|consen 94 -------------------------------HLRTKKIFVGGL--PPDTT--------EEDFKDYFEQFGKVADVVIMYD 132 (311)
T ss_pred -------------------------------ccceeEEEecCc--CCCCc--------hHHHhhhhhccceeEeeEEeec
Confidence 115669999999 66666 899999999999888776643
Q ss_pred ----CCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhccc
Q 006608 589 ----DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAK 634 (639)
Q Consensus 589 ----~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~ 634 (639)
..+|++||.|.+.+...+++. ..-..|+|+.|.|--|.+......
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 367999999999999999987 588899999999999998877653
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.51 E-value=1.3e-12 Score=128.92 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=141.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhc-cCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFE-PFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.-.+.+||.|||+++.+++|+.+|. +.|+|..|.|+.+..|+++|+|.|||++++.+++|++.||.+.+.|++|.|.-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3345699999999999999999996 689999999999999999999999999999999999999999999999999876
Q ss_pred ccCCcccCCCCCCCCCCCCC-CCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCC---CCC-CCccccccccc
Q 006608 429 TDQSGLQDLGANTTGDFDDD-EGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTA---LPL-PTAPLLGAASA 503 (639)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~ 503 (639)
.+....+.... ...... -.+++...-. ...+. .....++...-..+..+ ..- .+...+.
T Consensus 122 ~d~q~~~~~~~---~r~g~~~f~~~~~~q~G-----~~~l~----~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~---- 185 (608)
T KOG4212|consen 122 HDEQRDQYGRI---VRDGGGGFGGGGGVQGG-----NGGLN----GGGGGGGDRDRGFSRRDDDRLSRRNNTNTMS---- 185 (608)
T ss_pred Cchhhhhhhhe---eeccCcccccCcceecc-----ccccc----ccCCCCccccCCCCcccccccccccCccccc----
Confidence 55432110000 000000 0000000000 00000 00000000000000000 000 0000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEE
Q 006608 504 VSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH 583 (639)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~ 583 (639)
.......+++ .... ...+..+...-.++....+||.|| ...+- ...|.+.|.--|.|+.
T Consensus 186 --~~~~~~~~~~---lfgl------~~~Flr~~h~f~pPl~~k~fvanl--~~~vg--------~~kL~qvfgmAGkv~~ 244 (608)
T KOG4212|consen 186 --NDYNNSSNYN---LFGL------SASFLRSLHIFSPPLHNKVFVANL--DYKVG--------NKKLKQVFGMAGKVQS 244 (608)
T ss_pred --cccccchhhh---cccc------hhhhhhhccCCCCCccceeeeecc--ccccc--------hHHHHHHhccceeeee
Confidence 0000000000 0000 000000000112334558899999 44444 6889999999999998
Q ss_pred EEE----ecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEE
Q 006608 584 IFV----EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 625 (639)
Q Consensus 584 v~v----~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~ 625 (639)
|.+ ..+++|+|.|+|..+-+|.+||..|++.-+..++.++.+
T Consensus 245 vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 245 VDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred eceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 765 335789999999999999999999999888888877776
No 63
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=6.1e-13 Score=120.17 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=120.7
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeec-CCCCCcccEEEEEEcccccHHHHHH-hcCCccC---Cceeee
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMD-RNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL---GQPVMV 321 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d-~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~---g~~l~v 321 (639)
.-+||||.+||.++...+|..+|..|--.+.+.|... +...-.+-+|||+|.+...|.+||. |||..|+ +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4699999999999999999999999876666665442 2222355799999999999999996 9999885 577777
Q ss_pred ccchhhhhhhcccccc------C----------------------------CCC--------------------------
Q 006608 322 KPSEAEKNLVQSNSSI------A----------------------------GAS-------------------------- 341 (639)
Q Consensus 322 ~~~~~~~~~~~~~~~~------~----------------------------~~~-------------------------- 341 (639)
..+............. . ...
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 6554222111000000 0 000
Q ss_pred -------CCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC
Q 006608 342 -------GGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 414 (639)
Q Consensus 342 -------~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~ 414 (639)
..........+.+|||.||...++|++|+.+|..|-....++|-.. .| -..|||+|..++.|..||..|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHhh
Confidence 0000112233678999999999999999999999977666665433 23 3479999999999999999998
Q ss_pred Ccee
Q 006608 415 QLEI 418 (639)
Q Consensus 415 g~~i 418 (639)
|..|
T Consensus 270 g~~~ 273 (284)
T KOG1457|consen 270 GNLL 273 (284)
T ss_pred ccee
Confidence 8765
No 64
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.3e-13 Score=126.20 Aligned_cols=167 Identities=20% Similarity=0.355 Sum_probs=125.4
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
..+||++||..+.+.+|..+|..||.|..|.|. .||+||+|.+.-+|..|+-.|++..|+|-.+.|.++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 468999999999999999999999999999886 4589999999999999999999999999888888876443
Q ss_pred cccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCC
Q 006608 433 GLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLV 512 (639)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (639)
... |.+..+ ...+.+.
T Consensus 75 ~~~---------------------------------------------g~~~~g------------~r~~~~~------- 90 (216)
T KOG0106|consen 75 RGR---------------------------------------------GRPRGG------------DRRSDSR------- 90 (216)
T ss_pred ccc---------------------------------------------CCCCCC------------Cccchhh-------
Confidence 110 000000 0000000
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCc
Q 006608 513 QGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAG 592 (639)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g 592 (639)
. +..-....+.|+|.|+ ..... +.+|.+.|.++|.+....+ ..+
T Consensus 91 -------------~----------~~~p~~s~~r~~~~~~--~~r~~--------~qdl~d~~~~~g~~~~~~~---~~~ 134 (216)
T KOG0106|consen 91 -------------R----------YRPPSRTHFRLIVRNL--SLRVS--------WQDLKDHFRPAGEVTYVDA---RRN 134 (216)
T ss_pred -------------c----------cCCcccccceeeeccc--hhhhh--------HHHHhhhhcccCCCchhhh---hcc
Confidence 0 0000113447788888 32221 6999999999999966555 457
Q ss_pred cEEEEecchHHHHHHHHHhcCcccCCeEEEEEEc
Q 006608 593 FVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 626 (639)
Q Consensus 593 ~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~ 626 (639)
++||+|++.++|.+|+..|+|..+.|+.|.|.+.
T Consensus 135 ~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 135 FAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 8999999999999999999999999999999543
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=126.83 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=74.5
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
-.+||||||+|.+..+.|+.+|++||.|+.+.|+.|++||+++|||||+|++.+.|.+|++--...|+|+...|+.+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 4689999999999999999999999999999999999999999999999999999999999888899999999987643
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=3.8e-13 Score=105.18 Aligned_cols=69 Identities=25% Similarity=0.508 Sum_probs=65.5
Q ss_pred ceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceee
Q 006608 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 320 (639)
Q Consensus 251 l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~ 320 (639)
|||+|||+++|+++|.++|.+||.|..+.++.+ .++..+|||||+|.+.++|.+|++ ++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999997 999999998874
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=9.8e-13 Score=102.83 Aligned_cols=70 Identities=41% Similarity=0.713 Sum_probs=66.8
Q ss_pred EEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 355 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 355 l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
|||+|||..+++++|+++|..||.|..+.+..+..+..+|+|||+|.+.++|.+|++.|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999998877888899999999999999999999999999999885
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.40 E-value=7.9e-12 Score=126.18 Aligned_cols=175 Identities=19% Similarity=0.253 Sum_probs=130.8
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
....|.+.+||+.+|+++|+++|+.++ |..+.+.. .+|+..|-|||+|.+.+++.+||+ ++-..+..+-|.|--+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 356788999999999999999999995 66655544 368888999999999999999998 445677788888876543
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
.......
T Consensus 86 ~e~d~~~------------------------------------------------------------------------- 92 (510)
T KOG4211|consen 86 AEADWVM------------------------------------------------------------------------- 92 (510)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 3310000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEE-EEEec-
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVEK- 588 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~-v~v~~- 588 (639)
.+.. ........+|.|.+| |+.++ ++||.++|+-.-.|.. |.++.
T Consensus 93 ------------------~~~g-----~~s~~~d~vVRLRGL--Pfsct--------e~dI~~FFaGL~Iv~~gi~l~~d 139 (510)
T KOG4211|consen 93 ------------------RPGG-----PNSSANDGVVRLRGL--PFSCT--------EEDIVEFFAGLEIVPDGILLPMD 139 (510)
T ss_pred ------------------cCCC-----CCCCCCCceEEecCC--CccCc--------HHHHHHHhcCCcccccceeeecc
Confidence 0000 000012338999999 88888 8999999998877666 32322
Q ss_pred ---CCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcccC
Q 006608 589 ---DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKF 635 (639)
Q Consensus 589 ---~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~~ 635 (639)
.+.|-|||+|++.+.|++|+.. |...|+-+-|.|--+.-.++..+.
T Consensus 140 ~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 140 QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhc
Confidence 2568999999999999999985 888899998888887777776654
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=131.25 Aligned_cols=140 Identities=31% Similarity=0.502 Sum_probs=112.5
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
..+|||+|||+.+|+++|.++|..||.|..+.|..++.++.++|||||+|.+.++|..|+. +++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999997 889999999999988643
Q ss_pred -hh-hhhcc---ccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC
Q 006608 327 -EK-NLVQS---NSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 387 (639)
Q Consensus 327 -~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~ 387 (639)
.. ..... .....................+++.+++..+....+..+|..+|.+..+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 11 11110 000000111122233455788999999999999999999999999977777655
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.3e-14 Score=123.04 Aligned_cols=78 Identities=27% Similarity=0.488 Sum_probs=74.2
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
.++..|||||||+.+||.||.-+|++||.|++|.|++|+.||.++||||+.|.+......|+. |||..|.|+.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 356689999999999999999999999999999999999999999999999999999999997 999999999999954
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.35 E-value=1.6e-12 Score=123.98 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=70.9
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..||.|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 47899999999999999999999999999999998864 57999999999999999999999999999999988653
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.6e-12 Score=107.15 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+++|||+||.+.++|++|.++|.++|.|..|.|-.+ .+-.+.|||||+|.+.++|..|+..++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 44789999999999999999999999999999998877 46667999999999999999999999999999999999985
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
.--.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 5433
No 73
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=1.2e-11 Score=120.43 Aligned_cols=181 Identities=22% Similarity=0.226 Sum_probs=131.9
Q ss_pred ccceeeccccccCHhHHHHHHhhc----CCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 249 RTVFAYQICLKADERDVYEFFSRA----GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~----G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
-.|.+.+||+++|+.++.+||.+- |.++.|-++..++ |+..|-|||.|...++|+.||..|...++.+-|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356788999999999999999743 2344555555444 88999999999999999999998888887777777443
Q ss_pred hhhhhhhcccc-----ccCC-CCC------CCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCC-e--EEEEeccCCC
Q 006608 325 EAEKNLVQSNS-----SIAG-ASG------GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGT-V--ELVQLPLDET 389 (639)
Q Consensus 325 ~~~~~~~~~~~-----~~~~-~~~------~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-i--~~v~i~~~~~ 389 (639)
.........+. ...+ .+. ..-.+......+|-+.+||+.++.++|..+|..|.. | ..|.|+.+..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 32221111110 0000 000 011122334678999999999999999999998863 2 3367777778
Q ss_pred CCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 390 GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 390 ~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
|...|-|||+|.+.+.|..|....++....++-|.|-.+..
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 89999999999999999999998887777788888877643
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=5e-12 Score=98.79 Aligned_cols=70 Identities=43% Similarity=0.716 Sum_probs=64.5
Q ss_pred EEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 355 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 355 l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
|+|+|||+.+++++|.++|..||.|..+.+.....+..+|+|||+|.+.++|..|+..++|..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999986688899999999999999999999999999999884
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=1.8e-12 Score=101.37 Aligned_cols=69 Identities=32% Similarity=0.550 Sum_probs=62.8
Q ss_pred ceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceee
Q 006608 251 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 320 (639)
Q Consensus 251 l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~ 320 (639)
|||+|||+.+++++|.++|..||.|..+.++.++. +..+|+|||+|.+.++|.+|++ +++..+.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 8999999999999999999998 666899998874
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.5e-12 Score=118.28 Aligned_cols=81 Identities=28% Similarity=0.308 Sum_probs=77.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
+..+|.|.||+.+++|.+|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||. |+|.-+..--|.|+++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999997 99999999999999886
Q ss_pred hh
Q 006608 326 AE 327 (639)
Q Consensus 326 ~~ 327 (639)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 53
No 77
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=7.4e-12 Score=92.92 Aligned_cols=56 Identities=30% Similarity=0.541 Sum_probs=51.7
Q ss_pred HHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEc
Q 006608 571 VEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 626 (639)
Q Consensus 571 l~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~ 626 (639)
|.++|++||.|..|.+.....++|||+|.+.++|..|++.|||..|+|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997766799999999999999999999999999999999985
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=9.8e-12 Score=118.96 Aligned_cols=84 Identities=25% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec---CCCccEEEEecchHHHHHHHHHhcCcccCC
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK---DSAGFVYLRFENTQSAFAAQRALHGRWFAG 618 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~---~~~g~afV~F~s~e~A~~A~~~lng~~~~g 618 (639)
...+.|+|.|| |+... +-||+.+|.+||.|..|.|+. .+|||+||+|+++++|.+|.++|||..+.|
T Consensus 94 ~~pkRLhVSNI--PFrFR--------dpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 94 DTPKRLHVSNI--PFRFR--------DPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred CCCceeEeecC--Ccccc--------CccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 34568999999 87766 689999999999999998854 489999999999999999999999999999
Q ss_pred eEEEEEEcCchhhcccC
Q 006608 619 KMITATFMVPQTYEAKF 635 (639)
Q Consensus 619 ~~i~v~~~~~~~~~~~~ 635 (639)
++|.|..|+...++++.
T Consensus 164 RkIEVn~ATarV~n~K~ 180 (376)
T KOG0125|consen 164 RKIEVNNATARVHNKKK 180 (376)
T ss_pred eEEEEeccchhhccCCc
Confidence 99999999998777653
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.31 E-value=2.7e-12 Score=114.74 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=76.3
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
....|.|-||.+-++.++|+.+|++||.|-+|.|..|+.|+.++|||||.|....+|+.||+ |+|..|+|+.|.|+.+.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 44679999999999999999999999999999999999999999999999999999999997 99999999999998775
Q ss_pred hh
Q 006608 326 AE 327 (639)
Q Consensus 326 ~~ 327 (639)
..
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.31 E-value=8.5e-12 Score=111.60 Aligned_cols=88 Identities=34% Similarity=0.521 Sum_probs=81.0
Q ss_pred CCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 346 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 346 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
.+.......|.|-||.+-++.++|..+|++||.|-.|.|+.+ -|..++|||||.|....+|+.|+.+|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344456789999999999999999999999999999999999 5999999999999999999999999999999999999
Q ss_pred EEeeccCCc
Q 006608 425 VSAVTDQSG 433 (639)
Q Consensus 425 v~~~~~~~~ 433 (639)
|++|.....
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999986654
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4e-12 Score=104.86 Aligned_cols=80 Identities=26% Similarity=0.483 Sum_probs=75.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
.+.+++||||||++-++|+.|.++|+.+|.|..|.|-.|+++...=|||||+|.+.++|..||. ++++.|..++|.|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3577899999999999999999999999999999999999998899999999999999999998 999999999999976
Q ss_pred c
Q 006608 324 S 324 (639)
Q Consensus 324 ~ 324 (639)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 82
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.30 E-value=7.7e-11 Score=122.86 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=63.6
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRD-VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~-~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
+......|||..||..+++.++..+|...-.|++ |.|...+ ++.-.+.|||.|...+++..|+. .+.+.+..+.|.|
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 3445578999999999999999999998888888 5555444 47889999999999999988887 5666666677777
Q ss_pred cc
Q 006608 322 KP 323 (639)
Q Consensus 322 ~~ 323 (639)
..
T Consensus 509 ~s 510 (944)
T KOG4307|consen 509 DS 510 (944)
T ss_pred ec
Confidence 53
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=2.7e-12 Score=106.67 Aligned_cols=88 Identities=27% Similarity=0.408 Sum_probs=81.5
Q ss_pred CCCCCcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCc
Q 006608 239 EPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 317 (639)
Q Consensus 239 ~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~ 317 (639)
.+.++.+...+.|||.++...+||++|.+.|..||+|++|.|..|..||..+|||+|+|.+.++|++||. +||..|.|+
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 3455566788999999999999999999999999999999999999999999999999999999999996 999999999
Q ss_pred eeeeccchh
Q 006608 318 PVMVKPSEA 326 (639)
Q Consensus 318 ~l~v~~~~~ 326 (639)
.|.|.|+-.
T Consensus 143 ~v~VDw~Fv 151 (170)
T KOG0130|consen 143 NVSVDWCFV 151 (170)
T ss_pred ceeEEEEEe
Confidence 999988743
No 84
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=8.3e-12 Score=118.03 Aligned_cols=93 Identities=17% Similarity=0.315 Sum_probs=82.2
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+-+||||+.|+.+++|..|+..|..||+|+.|.|+.++.||.++|||||+|.+.-+...|.+ .+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 466999999999999999999999999999999999999999999999999999999999996 9999999999999775
Q ss_pred hhhhhhhccccccC
Q 006608 325 EAEKNLVQSNSSIA 338 (639)
Q Consensus 325 ~~~~~~~~~~~~~~ 338 (639)
.......|..--+.
T Consensus 179 RgRTvkgW~PRRLG 192 (335)
T KOG0113|consen 179 RGRTVKGWLPRRLG 192 (335)
T ss_pred cccccccccccccc
Confidence 55444445444443
No 85
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=8.3e-12 Score=109.04 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=69.7
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEE
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 623 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v 623 (639)
.+.|||.|| +..++ ..+|..+|.+||.|..|-|..++.|||||+|+++-+|..|+..|+|+.|+|..|.|
T Consensus 10 ~~kVYVGnL--~~~a~--------k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNL--GSRAT--------KRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccC--CCCcc--------hHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 568999999 55555 89999999999999999998899999999999999999999999999999999999
Q ss_pred EEcCch
Q 006608 624 TFMVPQ 629 (639)
Q Consensus 624 ~~~~~~ 629 (639)
++.+-.
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 997643
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=6.9e-12 Score=117.45 Aligned_cols=77 Identities=30% Similarity=0.455 Sum_probs=70.8
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
...+|||+||++.+|+++|++||+.||.|.+|.|+.+. ...|||||+|.+.++|..||.|+|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 34789999999999999999999999999999999884 456899999999999999999999999999999977543
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=95.96 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=71.6
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEE--ecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV--EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v--~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
-++.|||.|| |+..| .+++.++|.+||.|..|.| .+.-+|.|||-|+++.+|.+|+..|+|..+.++-
T Consensus 17 vnriLyirNL--p~~IT--------seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 17 VNRILYIRNL--PFKIT--------SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred hheeEEEecC--Ccccc--------HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 4569999999 88888 8999999999999999998 4556899999999999999999999999999999
Q ss_pred EEEEEcCchhh
Q 006608 621 ITATFMVPQTY 631 (639)
Q Consensus 621 i~v~~~~~~~~ 631 (639)
|.|-|..+...
T Consensus 87 l~vlyyq~~~~ 97 (124)
T KOG0114|consen 87 LVVLYYQPEDA 97 (124)
T ss_pred EEEEecCHHHH
Confidence 99999876653
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=115.79 Aligned_cols=84 Identities=35% Similarity=0.521 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....+.|+|.|||+..-+.||+.+|++||.|.+|.|+.+.-| +|||+||.|.++++|.+|-++|||..|.|+.|.|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344689999999999999999999999999999999988665 6999999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 87753
No 89
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=9.3e-12 Score=103.52 Aligned_cols=83 Identities=24% Similarity=0.477 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
...+.|||.++...+++++|.+.|..||+|..|.|..+ .+|..+|||+|+|.+.++|++|+..|||..|.|.+|.|.||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 44689999999999999999999999999999999999 79999999999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
-.+-
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7554
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=1.6e-11 Score=123.09 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=69.9
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEccc--ccHHHHHH-hcCCccCCceeeec
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDV--MSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~--~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
....+||||||++.+|+++|..+|..||.|..|.|+ +.+| +|||||+|... .++.+||. |+|..|.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345789999999999999999999999999999999 5566 99999999988 67899996 99999999999998
Q ss_pred cchh
Q 006608 323 PSEA 326 (639)
Q Consensus 323 ~~~~ 326 (639)
.+.+
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 7754
No 91
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.4e-11 Score=111.82 Aligned_cols=82 Identities=33% Similarity=0.464 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....+|-|.||+.++++.+|.++|.+||.|..|.|.++ .||.++|||||.|.+.++|.+||..|||.-++.-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 34678999999999999999999999999999999999 69999999999999999999999999999999999999998
Q ss_pred ccC
Q 006608 429 TDQ 431 (639)
Q Consensus 429 ~~~ 431 (639)
.+.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 92
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.24 E-value=3.8e-11 Score=114.59 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=71.5
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999988742 46899999999999999995 9999999999999998755
Q ss_pred C
Q 006608 432 S 432 (639)
Q Consensus 432 ~ 432 (639)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 4
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.4e-11 Score=95.57 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=71.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...+.|||.|||+.+|.+++.++|..||.|..|+|-..++ .+|.|||.|.+..+|.+|+. |+|..+.++.+.|-+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3457899999999999999999999999999999986655 68999999999999999997 9999999999999776
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
.+..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 5544
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.4e-12 Score=113.67 Aligned_cols=85 Identities=24% Similarity=0.450 Sum_probs=79.6
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++||||+|...+|+.-|...|.+||.|.+|+|+.|..+++++|||||+|...|+|.+||. ||+..|.|+.|.|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 355899999999999999999999999999999999999999999999999999999999997 9999999999999998
Q ss_pred hhhhhh
Q 006608 325 EAEKNL 330 (639)
Q Consensus 325 ~~~~~~ 330 (639)
.|.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 765543
No 95
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.6e-11 Score=105.97 Aligned_cols=78 Identities=29% Similarity=0.512 Sum_probs=72.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
.++|||+||+..+++.+|..+|..||+|..|+|-..+ -|||||||.++-+|..|+..|+|..|.|..|.|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5799999999999999999999999999999998753 469999999999999999999999999999999998766
Q ss_pred Cc
Q 006608 432 SG 433 (639)
Q Consensus 432 ~~ 433 (639)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 54
No 96
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2.9e-10 Score=116.89 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=114.1
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
.-..++|+|-|||..|++++|..+|..||.|..|+... ...|..||+|.++-+|+.|++ |++..+.|+.|++..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 44668999999999999999999999999999976653 467899999999999999996 999999999998543
Q ss_pred chhhhhhhccccccC---CCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEe
Q 006608 324 SEAEKNLVQSNSSIA---GASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 400 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef 400 (639)
........+...... +.......+...+...++. .|++......+...+.-+|.+.. ... +.-.-.-|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~----~~~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RET----PLLNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccc----cchhhhhhhhh
Confidence 222111111111000 0000001111111233333 38888877666666777776654 221 11122568888
Q ss_pred cCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 401 ARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 401 ~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.+..++..++-.+ |..+.+....+++...
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceEEecCC
Confidence 8888885555533 7777777777777654
No 97
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=7.8e-11 Score=111.53 Aligned_cols=82 Identities=28% Similarity=0.556 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+-+||||.-|+..++|..|+..|+.||+|..|.|+.+ -+|.++|||||+|...-+...|.+..+|+.|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 67899999999999999999999999999999999999 69999999999999999999999999999999999999985
Q ss_pred ccC
Q 006608 429 TDQ 431 (639)
Q Consensus 429 ~~~ 431 (639)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 98
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=6e-11 Score=125.54 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=71.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
....++|||||+|+.++++.+|..+|+.||.|..|.++ ..+|||||.+....+|.+||. |....+.++.|+|.
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 35678999999999999999999999999999999997 468899999999999999996 99999999999999
Q ss_pred cchhh
Q 006608 323 PSEAE 327 (639)
Q Consensus 323 ~~~~~ 327 (639)
|+...
T Consensus 491 Wa~g~ 495 (894)
T KOG0132|consen 491 WAVGK 495 (894)
T ss_pred eeccC
Confidence 87543
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=1e-10 Score=91.42 Aligned_cols=71 Identities=34% Similarity=0.528 Sum_probs=65.7
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
+|||+|||..++.++|.++|.+||.|..+.++.+. +.++|+|||+|.+.++|..|+. +++..+.|..|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 6789999999999999999997 89899999988763
No 100
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=5.1e-12 Score=110.77 Aligned_cols=82 Identities=28% Similarity=0.541 Sum_probs=77.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
+.-|||+|||+.+||.+|..+|+.||+|..|-|+++ .||.++||||+.|.+.-+..-|+..|||+.|.|+.|.|..+..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 456999999999999999999999999999999999 7999999999999999999999999999999999999998876
Q ss_pred CCc
Q 006608 431 QSG 433 (639)
Q Consensus 431 ~~~ 433 (639)
...
T Consensus 115 Yk~ 117 (219)
T KOG0126|consen 115 YKK 117 (219)
T ss_pred ccC
Confidence 653
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=1.9e-10 Score=89.75 Aligned_cols=72 Identities=40% Similarity=0.751 Sum_probs=66.6
Q ss_pred eEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
+|+|.|||..++.++|.++|..||.|..+.+..+. +.+.|+|||+|.+.+.|..|+..++|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888776 6678999999999999999999999999999998863
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=3.1e-10 Score=106.45 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=71.7
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
..+|+|+||++.+++++|+++|+.||.|..|.|+.+ +...++|||+|.+++.|..|+ .|+|..|.++.|.|......
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 579999999999999999999999999999999988 344679999999999999999 59999999999999987765
Q ss_pred Cc
Q 006608 432 SG 433 (639)
Q Consensus 432 ~~ 433 (639)
..
T Consensus 82 ~~ 83 (243)
T PLN03121 82 ED 83 (243)
T ss_pred cc
Confidence 53
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.3e-10 Score=90.36 Aligned_cols=70 Identities=34% Similarity=0.579 Sum_probs=65.5
Q ss_pred eeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 253 AYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 253 v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
|+|||..+++++|..+|.+||.|..+.+..++.++.++|||||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988888999999999999999999997 88899999988773
No 104
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.1e-10 Score=107.29 Aligned_cols=81 Identities=30% Similarity=0.474 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||++|++.+..+.|++.|+.||.|++..++.+ .+|+++||+||.|.+.++|..|++-.| -.|+|+...+.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 345689999999999999999999999999999999999 699999999999999999999998665 679999888877
Q ss_pred ecc
Q 006608 428 VTD 430 (639)
Q Consensus 428 ~~~ 430 (639)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 654
No 105
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.11 E-value=4.6e-11 Score=123.83 Aligned_cols=79 Identities=30% Similarity=0.496 Sum_probs=75.8
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~ 327 (639)
+.|||||||+.+++++|..+|...|.|.+++++.|+.||..+||||++|.+.++|..|++ |+|..+.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999997 9999999999999876543
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.2e-11 Score=106.52 Aligned_cols=84 Identities=39% Similarity=0.670 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
...++|||++|...+++.-|...|-+||.|..|+|+.+ .+++.+||+||+|...++|.+||..||+..|.|+.|.|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.+...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87654
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6.9e-10 Score=113.24 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=113.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCC--Cccc---EEEEEEcccccHHHHHH-hcC--C--cc-
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSR--RSKG---VGYVEFYDVMSVPMAIA-LSG--Q--PL- 314 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~--~~~g---~afV~f~~~~~a~~al~-~~~--~--~~- 314 (639)
.-+++||||+||++|+|+.|...|..||.+.--+-.+....+ ..+| |+|+.|.+...+...|. ... . .|
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 456899999999999999999999999988755543221111 2566 99999999999988874 111 1 11
Q ss_pred ------CCceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhc-cCCCeEEEEeccC
Q 006608 315 ------LGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFE-PFGTVELVQLPLD 387 (639)
Q Consensus 315 ------~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~-~~G~i~~v~i~~~ 387 (639)
..+.|.|.+. ......-.-. ......+.+||||++||-.++.++|..+|+ -||.|..+-|-.|
T Consensus 337 vss~~~k~k~VQIrPW--------~laDs~fv~d--~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPW--------VLADSDFVLD--HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred EecCcccccceeEEee--------Eeccchhhhc--cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 1122222211 1110000000 112236689999999999999999999999 7999999999988
Q ss_pred -CCCCcceEEEEEecCHHHHHHHHHH
Q 006608 388 -ETGHCKGFGFVQFARLEDARNALNL 412 (639)
Q Consensus 388 -~~~~~~g~afVef~~~~~A~~A~~~ 412 (639)
+...++|.|-|.|.+..+-.+||.+
T Consensus 407 ~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 407 PKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCCCCCcceeeecccHHHHHHHhh
Confidence 6888999999999999999999974
No 108
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.6e-10 Score=114.54 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCH--HHHHHHHHHcCCceecCeEEEEEee
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL--EDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~--~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....|||+||++.+++++|..+|..||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..+.|+.|+|..+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 357899999999999999999999999999999994 466 99999999987 7899999999999999999999999
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
.+..
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 8765
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.09 E-value=6.8e-10 Score=87.14 Aligned_cols=74 Identities=42% Similarity=0.671 Sum_probs=68.6
Q ss_pred eEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
+|+|.|||..+++++|.++|..+|.|..+.+.....+...|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999876556789999999999999999999999999999999864
No 110
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=5.2e-11 Score=107.59 Aligned_cols=144 Identities=30% Similarity=0.414 Sum_probs=122.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...+||||+||...++|+-|.++|.+.|+|..|.|..++. +..+ ||||.|.+.-.+.-|++ +||..+.+..+.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3568999999999999999999999999999999988776 4455 99999999999999998 9999999999988542
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcC----CCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEe
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGN----LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 400 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef 400 (639)
-++ |...++++.+...|...|++..+.+..+..|..+.++|+.+
T Consensus 85 --------------------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 85 --------------------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTY 132 (267)
T ss_pred --------------------------------cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhh
Confidence 222 55678999999999999999999999887788888999999
Q ss_pred cCHHHHHHHHHHcCCceecCeEE
Q 006608 401 ARLEDARNALNLNGQLEIVGRAI 423 (639)
Q Consensus 401 ~~~~~A~~A~~~l~g~~i~g~~i 423 (639)
....+...++....++.+.-+++
T Consensus 133 qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 133 QRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred hhhhcCcHHhhhhcccCcCCCCc
Confidence 99888888888777665444443
No 111
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.07 E-value=1.4e-09 Score=110.21 Aligned_cols=79 Identities=39% Similarity=0.698 Sum_probs=75.6
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
..+|||+|||..+++++|.++|..||.|..|.+..+ .++.++|||||+|.+.++|..|+..++|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999999999998 5899999999999999999999999999999999999999764
No 112
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=5.5e-10 Score=86.83 Aligned_cols=70 Identities=47% Similarity=0.739 Sum_probs=64.6
Q ss_pred EcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 357 VGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 357 v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
|+|||..+++++|+++|..||.|..+.+..+. ++.++|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998874 67889999999999999999999999999999998873
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.06 E-value=4.6e-10 Score=116.47 Aligned_cols=80 Identities=34% Similarity=0.571 Sum_probs=76.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
..|||+|||+.+++++|..+|...|.|..++++.| .+|.++||||++|.+.+.|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999 79999999999999999999999999999999999999998755
Q ss_pred C
Q 006608 432 S 432 (639)
Q Consensus 432 ~ 432 (639)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.04 E-value=4e-09 Score=110.37 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=121.1
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
+.+-+.++++.+.+.++.++|... .|..+.|..+. .+...|.++|+|.....+++|++.-+ ..+-.+.|.|..+.+.
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~-~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNP-SDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCc-hhhhhcceeecCCCcc
Confidence 345567888899999999998754 34444444442 23336789999999999999987433 4455666666554322
Q ss_pred CcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCC
Q 006608 432 SGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPL 511 (639)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (639)
.-..... .....+ +.........+..+ +.++.
T Consensus 390 ~~~~a~~-------------------------------------~~~~~~-~~~~~~~hg~p~~~----pr~~~------ 421 (944)
T KOG4307|consen 390 GRNGAPP-------------------------------------FQAGVP-PPVIQNNHGRPIAP----PRAMV------ 421 (944)
T ss_pred ccccCcc-------------------------------------ccccCC-CCcccccCCCCCCC----ccccc------
Confidence 2100000 000000 00000000000000 00000
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEE-EEEec--
Q 006608 512 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVEK-- 588 (639)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~-v~v~~-- 588 (639)
. ..+....| ...+-+|||..| |.+++ +.++.++|..--.|+. |.|-.
T Consensus 422 -------~---~gq~vp~P----------~~ag~~lyv~~l--P~~t~--------~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 422 -------R---PGQNVPFP----------GGAGGALYVFQL--PVMTP--------IVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred -------C---CCCCCCCC----------CCccceEEeccC--Ccccc--------ccchhhhhhhhhhhhheeEeccCC
Confidence 0 00001111 235669999999 88777 7899999998877776 55522
Q ss_pred -C-CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 589 -D-SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 589 -~-~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
+ -.+.|||.|..++++..|+..-+-..++-+.|.|.-+.++.|
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 1 357899999999999999998888888999999999888776
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=1.2e-09 Score=80.96 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=50.9
Q ss_pred HHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 369 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 369 l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
|.++|++||.|..|.+.... .++|||+|.+.++|..|+..|||..|+|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998763 479999999999999999999999999999999985
No 116
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.02 E-value=1.1e-09 Score=85.85 Aligned_cols=72 Identities=38% Similarity=0.632 Sum_probs=66.4
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
+|+|+|||+.+++++|.++|..+|.|..+.+..+..+ ...|+|||+|.+.++|..|+. +++..+.|..|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987765 678999999999999999997 89988999998875
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=4.3e-11 Score=128.28 Aligned_cols=238 Identities=17% Similarity=0.173 Sum_probs=184.1
Q ss_pred cccceeeccccccCHh-HHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADER-DVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~-~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
....++.++.+..... .....|..+|.|+.|.+.....--....++++.+.....++.|....+..+.++.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 3456677777765555 578889999999999998733322333389999999999999999999999998888876655
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~ 405 (639)
......... .........++||.||+..+.+.+|...|.++|.+..+++... ..+..+|+|||+|..+++
T Consensus 651 ~~~~~~~kv---------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 651 EEKEENFKV---------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred hhhhhccCc---------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 442111100 0001122467999999999999999999999999988877733 577789999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcc
Q 006608 406 ARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAV 485 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (639)
+.+|+....+..++ +
T Consensus 722 ~~aaV~f~d~~~~g-----------K------------------------------------------------------ 736 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFG-----------K------------------------------------------------------ 736 (881)
T ss_pred hhhhhhhhhhhhhh-----------h------------------------------------------------------
Confidence 99999877654332 0
Q ss_pred cCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHh
Q 006608 486 NSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDM 565 (639)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~ 565 (639)
..|+|.|. |+..|
T Consensus 737 -----------------------------------------------------------~~v~i~g~--pf~gt------ 749 (881)
T KOG0128|consen 737 -----------------------------------------------------------ISVAISGP--PFQGT------ 749 (881)
T ss_pred -----------------------------------------------------------hhhheeCC--CCCCc------
Confidence 15778888 77776
Q ss_pred hHHHHHHHHhhhcCcEEEEEEec----CCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 566 DIKEDVEGECSKFGKLKHIFVEK----DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 566 ~~~~dl~~~f~~~G~V~~v~v~~----~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
.+.+..+|.++|+++.+.++. .++|.|||.|.+..+|.+++..+.+..+.-+.+.|..-++
T Consensus 750 --~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 750 --KEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred --hHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 799999999999999987632 3679999999999999999999999999888888877444
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=98.93 E-value=2.4e-09 Score=83.27 Aligned_cols=60 Identities=25% Similarity=0.386 Sum_probs=54.6
Q ss_pred HhHHHHHHh----hcCCeeEEE-EeecCCC--CCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 262 ERDVYEFFS----RAGKVRDVR-LIMDRNS--RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 262 e~~l~~~f~----~~G~i~~~~-i~~d~~~--~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
+++|.++|. .||.|..|. |+.++.+ +.++|||||+|.+.++|.+|+. |+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999996 7777776 8999999999999999999997 9999999999876
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=4.2e-09 Score=81.88 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=52.2
Q ss_pred HHHHHHHhc----cCCCeEEEE-eccC-CC--CCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 366 EDQLRQVFE----PFGTVELVQ-LPLD-ET--GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 366 e~~l~~~f~----~~G~i~~v~-i~~~-~~--~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
+++|.++|. +||.|..|. |+.+ .+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888887 999999885 4444 34 889999999999999999999999999999999976
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.1e-09 Score=118.03 Aligned_cols=161 Identities=19% Similarity=0.279 Sum_probs=134.5
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++||+|||+..+++.+|+..|..+|.|..|.|-.-.. +...-||||.|.+..++-.|.. +.+..|....+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4668999999999999999999999999999999866532 4566799999999999999885 8887776666655443
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHH
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLE 404 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~ 404 (639)
.+ ....++.+++++|..++....|..+|..||.|..|.+-.. .-|+||.|.+..
T Consensus 449 ~~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~ 502 (975)
T KOG0112|consen 449 QP---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPP 502 (975)
T ss_pred cc---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCc
Confidence 21 2345789999999999999999999999999998877543 349999999999
Q ss_pred HHHHHHHHcCCceecC--eEEEEEeeccCCc
Q 006608 405 DARNALNLNGQLEIVG--RAIKVSAVTDQSG 433 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g--~~i~v~~~~~~~~ 433 (639)
.|+.|+..|-|..|+| +.|.|.|+.+...
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 9999999999999986 5688999876544
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.89 E-value=3.4e-09 Score=105.21 Aligned_cols=178 Identities=28% Similarity=0.330 Sum_probs=141.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCC-ccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQ-PLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~-~~~g~~l~v~~~ 324 (639)
....++|++++.+++.+.++..++..+|.+..+.+........++|+++|.|...+.+..||++.+. .+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3568999999999999999999999999999998888888889999999999999999999998775 555555544322
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCce-EEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecC
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARR-LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFAR 402 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~ 402 (639)
..-.. ...+.. ......+..+ ++|++|++.++.++|+..|..+|.|..+.++.. .++...||+||.|.+
T Consensus 166 ~~~~~-~~~n~~--------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 166 TRRGL-RPKNKL--------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred ccccc-cccchh--------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 21110 000000 0011122334 459999999999999999999999999999988 699999999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 403 LEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 403 ~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
...+..++.. +...+++.++.|.+..+...
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred chhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 9999999987 77889999999999876654
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.87 E-value=1.4e-08 Score=108.04 Aligned_cols=76 Identities=29% Similarity=0.549 Sum_probs=71.4
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
++||||++|+..+++.+|..+|+.||.|..|.++.. +|+|||.+..-.+|.+|+++|.+..+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 689999999999999999999999999999999865 889999999999999999999999999999999998755
Q ss_pred C
Q 006608 432 S 432 (639)
Q Consensus 432 ~ 432 (639)
-
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 3
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=3.9e-10 Score=121.14 Aligned_cols=150 Identities=23% Similarity=0.320 Sum_probs=131.6
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
+...++||.||+..+.+.+|...|..+|.+..++|..-.+.+..+|+|||+|...+++.+|+++....+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 56678999999999999999999999999988888766677899999999999999999999866555544
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLED 405 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~ 405 (639)
...|+|.|+|+..|.+.++.+|.++|.+..+.++....|+++|.+||.|.+..+
T Consensus 736 --------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 736 --------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred --------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 135889999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEeecc
Q 006608 406 ARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
|..++....+..+.-..+.|..+.+
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhcccchhhhhhhcCccccccCC
Confidence 9999988877777766677766554
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.83 E-value=4.6e-09 Score=102.99 Aligned_cols=211 Identities=15% Similarity=0.125 Sum_probs=126.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC----CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD----ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~----~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..|.|.||.+.++.++++.||...|.|..+.|+.. ........|||.|.+...+..|.. |.+++|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 38999999999999999999999999999988764 233446789999999999887766 5557777777777654
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006608 429 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 508 (639)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (639)
...... ... ++..++..+ ..++. +++.++.++.
T Consensus 87 ~~~~~p------------------------~r~-af~~l~~~n---avprl-----l~pdg~Lp~~-------------- 119 (479)
T KOG4676|consen 87 GDEVIP------------------------DRF-AFVELADQN---AVPRL-----LPPDGVLPGD-------------- 119 (479)
T ss_pred CCCCCc------------------------cHH-HHHhcCccc---ccccc-----cCCCCccCCC--------------
Confidence 433311 000 111121111 11111 0000000000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCCC--CCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEE
Q 006608 509 PPLVQGTVPTHPGQLGTALQVPTASVPIFDT--IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV 586 (639)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v 586 (639)
.++ +.-+...+++..++...+.+.. +..-..+|+|.+| +.. | +..++.++|..+|.|.+..+
T Consensus 120 ---~~l---t~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl--~~~-----~---~l~e~~e~f~r~Gev~ya~~ 183 (479)
T KOG4676|consen 120 ---RPL---TKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSL--ISA-----A---ILPESGESFERKGEVSYAHT 183 (479)
T ss_pred ---Ccc---ccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcc--hhh-----h---cchhhhhhhhhcchhhhhhh
Confidence 000 0011111222222111111111 1222378999999 332 2 27899999999999999877
Q ss_pred -ecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 587 -EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 587 -~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
-+.-..+|.|+|........|+. ++|..|.-....+....|
T Consensus 184 ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 184 ASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 23334567799999888888887 689988855544444433
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8e-09 Score=99.95 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=80.9
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
-..+|..+|||..|.+-++.++|.-+|+.||.|..|.++.+ .+|.+..||||+|.+.+++.+|+-+|++..|+.+.|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34577899999999999999999999999999999999999 79999999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.|+.....
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99876553
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=8.8e-09 Score=97.21 Aligned_cols=88 Identities=27% Similarity=0.597 Sum_probs=74.7
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec-C-----CCccEEEEecchHHHHHHHHHhcCc
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-D-----SAGFVYLRFENTQSAFAAQRALHGR 614 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~-~-----~~g~afV~F~s~e~A~~A~~~lng~ 614 (639)
..++++|.+.|++.+.+.. .+|+.++.++|++||.|..|.|-- + ..--.||+|+.+++|.+|+--|||+
T Consensus 278 ~~ptkvlllrnmVg~gevd-----~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR 352 (378)
T KOG1996|consen 278 KCPTKVLLLRNMVGAGEVD-----EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR 352 (378)
T ss_pred hcchHHHHhhhhcCccccc-----HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc
Confidence 5678899999998876543 456899999999999999887621 1 1245799999999999999999999
Q ss_pred ccCCeEEEEEEcCchhhcc
Q 006608 615 WFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 615 ~~~g~~i~v~~~~~~~~~~ 633 (639)
.|+|++|...|++++.|..
T Consensus 353 yFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 353 YFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred eecceeeeheeccHHhhhh
Confidence 9999999999999999875
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.70 E-value=5.1e-08 Score=88.25 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccC-CCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPF-GTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
......++|..+|..+.+.+|..+|.+| |.|..+.+-++ .||.++|||||+|.+.+.|.-|-+.||+..|.|+.|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 67788888777 799999999999999999999999999999999999999
Q ss_pred eeccC
Q 006608 427 AVTDQ 431 (639)
Q Consensus 427 ~~~~~ 431 (639)
+..+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98765
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.5e-08 Score=96.53 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=78.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHH-HhcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al-~~~~~~~~g~~l~v~~ 323 (639)
..+.+.|||--|.+.+|.++|.-+|+.||+|..|.||.|..||.+..||||+|.+.+++++|. .|++..|..+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 345688999999999999999999999999999999999999999999999999999999998 6999999999999988
Q ss_pred chhhhhh
Q 006608 324 SEAEKNL 330 (639)
Q Consensus 324 ~~~~~~~ 330 (639)
+..-...
T Consensus 316 SQSVsk~ 322 (479)
T KOG0415|consen 316 SQSVSKV 322 (479)
T ss_pred hhhhhhh
Confidence 7654443
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.3e-08 Score=110.13 Aligned_cols=159 Identities=19% Similarity=0.310 Sum_probs=127.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
..+.+||++||+..+++.+|...|..+|.|..|.|-....+....|+||.|.+...+..|+..+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 44789999999999999999999999999999988766444445699999999999999998888876665544444422
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
.+
T Consensus 450 ~k------------------------------------------------------------------------------ 451 (975)
T KOG0112|consen 450 PK------------------------------------------------------------------------------ 451 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~ 589 (639)
..+++-|++++|..-.. ..-|..+|..||.|..|.+. .
T Consensus 452 -------------------------------st~ttr~~sgglg~w~p----------~~~l~r~fd~fGpir~Idy~-h 489 (975)
T KOG0112|consen 452 -------------------------------STPTTRLQSGGLGPWSP----------VSRLNREFDRFGPIRIIDYR-H 489 (975)
T ss_pred -------------------------------cccceeeccCCCCCCCh----------HHHHHHHhhccCcceeeecc-c
Confidence 12455788888832211 57899999999999999884 4
Q ss_pred CCccEEEEecchHHHHHHHHHhcCcccCC--eEEEEEEcCc
Q 006608 590 SAGFVYLRFENTQSAFAAQRALHGRWFAG--KMITATFMVP 628 (639)
Q Consensus 590 ~~g~afV~F~s~e~A~~A~~~lng~~~~g--~~i~v~~~~~ 628 (639)
+.-+|||.|+++..|+.|+..|-|..|+| +.|.|.||.+
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 67899999999999999999999999985 6899999765
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.63 E-value=4.7e-08 Score=88.48 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=72.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhc-CCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRA-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~-G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...-++|..||..+.+.+|..+|.+| |.|..+++.+++.||.++|||||+|.+.+-|.-|.+ ||+..|.|+-|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44678999999999999999999988 788899999999999999999999999999999997 9999999999998764
Q ss_pred h
Q 006608 325 E 325 (639)
Q Consensus 325 ~ 325 (639)
.
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 3
No 131
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=4.8e-08 Score=88.72 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....++|||.||-..|+++.|.++|-..|+|..|.|+....+..+ ||||.|.+...+.-|++++||..+.+..+.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 355789999999999999999999999999999999998877777 9999999999999999999999999999998875
Q ss_pred ccC
Q 006608 429 TDQ 431 (639)
Q Consensus 429 ~~~ 431 (639)
.-.
T Consensus 85 ~G~ 87 (267)
T KOG4454|consen 85 CGN 87 (267)
T ss_pred cCC
Confidence 533
No 132
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=1.3e-07 Score=91.91 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=68.2
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH--hcCCccCCceeeecc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA--LSGQPLLGQPVMVKP 323 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~--~~~~~~~g~~l~v~~ 323 (639)
....+|||++|-..+++.+|+++|-+||.|..|.+.. .+|+|||+|.+.+.|+.|++ ++...|.|..|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 4458999999999999999999999999999999974 46699999999999999995 888899999999998
Q ss_pred chh
Q 006608 324 SEA 326 (639)
Q Consensus 324 ~~~ 326 (639)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 765
No 133
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.2e-06 Score=88.04 Aligned_cols=179 Identities=20% Similarity=0.275 Sum_probs=112.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC--C--CCCcce---EEEEEecCHHHHHHHHHHcCCceecCeE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD--E--TGHCKG---FGFVQFARLEDARNALNLNGQLEIVGRA 422 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~--~--~~~~~g---~afVef~~~~~A~~A~~~l~g~~i~g~~ 422 (639)
.-+++|||++||+.++|+.|...|..||.+. |.++.. . .-.++| |+|+.|..+..+..-|.++.- +...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 4478999999999999999999999999863 344421 1 223466 999999999888877765532 3333
Q ss_pred EEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccc
Q 006608 423 IKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAAS 502 (639)
Q Consensus 423 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (639)
+.+............ .-.+..+.+.+ .++
T Consensus 333 ~yf~vss~~~k~k~V-QIrPW~laDs~------------fv~-------------------------------------- 361 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEV-QIRPWVLADSD------------FVL-------------------------------------- 361 (520)
T ss_pred eEEEEecCcccccce-eEEeeEeccch------------hhh--------------------------------------
Confidence 333222222110000 00000000000 000
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhh-hcCcE
Q 006608 503 AVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS-KFGKL 581 (639)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~-~~G~V 581 (639)
. ....-.+.+||||++| |-.++ -++|-.+|+ -||.|
T Consensus 362 --------------------------d-------~sq~lDprrTVFVGgv--prpl~--------A~eLA~imd~lyGgV 398 (520)
T KOG0129|consen 362 --------------------------D-------HNQPIDPRRTVFVGGL--PRPLT--------AEELAMIMEDLFGGV 398 (520)
T ss_pred --------------------------c-------cCcccCccceEEecCC--CCcch--------HHHHHHHHHHhcCce
Confidence 0 0011237789999999 55555 789999999 79999
Q ss_pred EEEEEecC-----CCccEEEEecchHHHHHHHHH----hcCcccCCeEEEEEEcC
Q 006608 582 KHIFVEKD-----SAGFVYLRFENTQSAFAAQRA----LHGRWFAGKMITATFMV 627 (639)
Q Consensus 582 ~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~----lng~~~~g~~i~v~~~~ 627 (639)
..+-|+.+ ++|.|=|+|.+.++=.+||.+ |+...|. +.|.|..+.
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPYv 452 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPYV 452 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeeccee
Confidence 99988554 689999999999999999875 2233332 355555443
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=6.1e-07 Score=87.39 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=71.9
Q ss_pred CCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHH-HcCCceecCeE
Q 006608 344 GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRA 422 (639)
Q Consensus 344 ~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~-~l~g~~i~g~~ 422 (639)
...+......+|||++|-..+++.+|.+.|.+||+|..|.+... +++|||+|.+-+.|+.|.. .++.+.|+|..
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34445566789999999999999999999999999999998865 6699999999999999985 56778899999
Q ss_pred EEEEeecc
Q 006608 423 IKVSAVTD 430 (639)
Q Consensus 423 i~v~~~~~ 430 (639)
|.|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999877
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.45 E-value=5.2e-07 Score=86.22 Aligned_cols=83 Identities=25% Similarity=0.488 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
....|+|.|||..|+.++|+++|..||.+..+.+..+..|.+.|.|-|.|...++|..|++.++|+.++|..+.+..+..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCc
Q 006608 431 QSG 433 (639)
Q Consensus 431 ~~~ 433 (639)
...
T Consensus 162 ~~~ 164 (243)
T KOG0533|consen 162 PSQ 164 (243)
T ss_pred ccc
Confidence 653
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.44 E-value=3.4e-07 Score=93.96 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=74.4
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
....+.|||.+|...+-..+|+.+|++||.|+..+++.+..+...+.||||++.+..+|.+||. |+.+.|.|+-|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3456889999999999999999999999999999999998887789999999999999999997 999999999999975
Q ss_pred ch
Q 006608 324 SE 325 (639)
Q Consensus 324 ~~ 325 (639)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 54
No 137
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.43 E-value=8.9e-08 Score=89.72 Aligned_cols=70 Identities=29% Similarity=0.513 Sum_probs=61.4
Q ss_pred hHhhHHHHHHHHhh-hcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhc
Q 006608 563 FDMDIKEDVEGECS-KFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 632 (639)
Q Consensus 563 ~~~~~~~dl~~~f~-~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~ 632 (639)
.+.++.+||+.+|+ +||.|+.++|..+ -.|-+||+|...++|++|++.|||..|+|++|++.|.+.-.|.
T Consensus 77 ~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 77 HEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 45567799999999 9999999988554 3689999999999999999999999999999999998876554
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.41 E-value=3.2e-08 Score=98.01 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=125.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCe-EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCc-eecCeEEEEEeecc
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL-EIVGRAIKVSAVTD 430 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i-~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~-~i~g~~i~v~~~~~ 430 (639)
..||++||.+.++..+|..+|...-.- ..-.|++ .||+||.+.+...|.+|++.++|. .+.|..+.|.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 368999999999999999999865211 1112222 579999999999999999999885 57788888877554
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
+..
T Consensus 76 kkq----------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 76 KKQ----------------------------------------------------------------------------- 78 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 431
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEe-cC
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE-KD 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~-~~ 589 (639)
.++.+.|.|+ |..+. ++-|..++..||.|..|... .+
T Consensus 79 --------------------------------rsrk~Qirni--ppql~--------wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 79 --------------------------------RSRKIQIRNI--PPQLQ--------WEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred --------------------------------HhhhhhHhcC--CHHHH--------HHHHHHHHhccCCHhHhhhhccc
Confidence 2235668888 65544 68888999999999998762 22
Q ss_pred -CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcccCCC
Q 006608 590 -SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPD 637 (639)
Q Consensus 590 -~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~~~~ 637 (639)
..-..-|+|.+.+.++.|+..|+|..|....++|.|++.+.-.++.|.
T Consensus 117 ~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~q~~p~ 165 (584)
T KOG2193|consen 117 SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNAQHQPG 165 (584)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhhccCcc
Confidence 234457899999999999999999999999999999999988877663
No 139
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.40 E-value=1.8e-07 Score=92.01 Aligned_cols=167 Identities=20% Similarity=0.224 Sum_probs=117.6
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCC---CCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN---SRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~---~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
..|.|.||.+.+|.++|+.+|...|.|..+.|+.... .....-.|||.|.+...+..|..|.++++-+..|.|-+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4799999999999999999999999999999987432 2335568999999999999999999999999888885432
Q ss_pred hhhh-----hh--ccccccC------CCCCC--------------CCCCC----------CCCCceEEEcCCCCcCCHHH
Q 006608 326 AEKN-----LV--QSNSSIA------GASGG--------------GTGPY----------SGGARRLYVGNLHFNMTEDQ 368 (639)
Q Consensus 326 ~~~~-----~~--~~~~~~~------~~~~~--------------~~~~~----------~~~~~~l~v~nlp~~~~e~~ 368 (639)
.... +. ..+.... +...+ ...+. ....++|+|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 1110 00 0000000 00000 00000 01136789999999999999
Q ss_pred HHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 369 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 369 l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
+.+.|..+|.|....+-.. ...-+|.|+|....+...|+. ++|..+.
T Consensus 168 ~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999876665443 223478899999988888887 4455554
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.39 E-value=1.1e-06 Score=90.38 Aligned_cols=85 Identities=22% Similarity=0.405 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....+.|||.+|...+-..+|+++|++||.|+..+++.+ .+.-.++|+||.+.+..+|.+||..|+...|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345688999999999999999999999999999998887 4444689999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
++....
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 876553
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.37 E-value=3.2e-07 Score=85.44 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=122.1
Q ss_pred ccceeeccccccCHhH-H--HHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 249 RTVFAYQICLKADERD-V--YEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~-l--~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
-.++++++-..+..+- | ...|..+-.+....+..+.. +...+++|+.|.....-.++-. -++..+.-.+|++...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4456666666655554 3 56666665566666665544 5688999999987666665553 4455555555555322
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCH
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~ 403 (639)
.. |...+.. .-......||-+.|...++.+.|...|.+|-.-....++++ .+|+++||+||.|.++
T Consensus 176 ts-----wedPsl~--------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~p 242 (290)
T KOG0226|consen 176 TS-----WEDPSLA--------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDP 242 (290)
T ss_pred cc-----cCCcccc--------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCH
Confidence 11 1111100 01133468999999999999999999999988888888888 6999999999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 404 EDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
.++..|+..|+|..++.++|.+.....+.
T Consensus 243 ad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 243 ADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999999887766554
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=5.8e-07 Score=93.04 Aligned_cols=72 Identities=29% Similarity=0.438 Sum_probs=65.3
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
..++.+|+|.|||..|++++|..+|+.||+|..|+.-.. ..|++||+|.++-+|+.|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 356789999999999999999999999999998776543 467999999999999999999999999999988
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.32 E-value=1.1e-06 Score=83.97 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=71.2
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
-+.+|+|.|||..++.++|+++|..||.+..+.|.+++. |.+.|.|-|.|...++|..||+ +++..+.|..|++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 446899999999999999999999999999999999987 8899999999999999999997 9999999999888643
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.31 E-value=7.1e-07 Score=88.79 Aligned_cols=175 Identities=18% Similarity=0.157 Sum_probs=129.6
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|++++...+.+.++..++..+|.+....+... ....++|+++|.|...+.+..||.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4678999999999999999999999998877766664 577789999999999999999998555445556555544422
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
....+ ..
T Consensus 167 ~~~~~---~~---------------------------------------------------------------------- 173 (285)
T KOG4210|consen 167 RRGLR---PK---------------------------------------------------------------------- 173 (285)
T ss_pred ccccc---cc----------------------------------------------------------------------
Confidence 11100 00
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~ 589 (639)
.+.. .-........++|.|| ++.++ .++|..+|..+|.|..+.++..
T Consensus 174 -------------------n~~~----~~~~~~s~~~~~~~~~--~f~~~--------~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 174 -------------------NKLS----RLSSGPSDTIFFVGEL--DFSLT--------RDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred -------------------chhc----ccccCccccceeeccc--ccccc--------hHHHhhhccCcCcceeeccCCC
Confidence 0000 0000112224459999 76666 7889999999999999999543
Q ss_pred -----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhc
Q 006608 590 -----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 632 (639)
Q Consensus 590 -----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~ 632 (639)
++|++||+|.+...+..|+.. +...+.+.++.|.+-.+....
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 579999999999999999987 888999999999997776544
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.31 E-value=5.2e-07 Score=86.66 Aligned_cols=83 Identities=23% Similarity=0.305 Sum_probs=77.2
Q ss_pred CcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 243 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 243 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
....+...+||+|+.+.+|-++|...|+.||.|..+.|.+|..+|..+|||||+|.+.+.+..++.|++..|.|..+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cch
Q 006608 323 PSE 325 (639)
Q Consensus 323 ~~~ 325 (639)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 643
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.30 E-value=1.3e-06 Score=90.47 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=68.7
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
.....+|||+|||++++..+|.++|..||.|+...|....-.+....||||+|.+..+++.||..+...|+++.|.|+..
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 34455699999999999999999999999999888876543344449999999999999999998899999999999643
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.28 E-value=5.4e-06 Score=64.03 Aligned_cols=74 Identities=27% Similarity=0.388 Sum_probs=51.8
Q ss_pred ceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcC-cEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEE
Q 006608 545 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 623 (639)
Q Consensus 545 ~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G-~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v 623 (639)
..|+|.|| |.... -..+..-|+.++..+| .|..|. .+.|+|.|.+.+.|.+|++.|+|..+.|..|.|
T Consensus 3 s~L~V~NL--P~~~d----~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNL--PTNKD----PSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES----TTS-----HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecC--CCCCC----HHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 37999999 54322 3345789999999986 577663 478999999999999999999999999999999
Q ss_pred EEcCch
Q 006608 624 TFMVPQ 629 (639)
Q Consensus 624 ~~~~~~ 629 (639)
+|.+..
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 998543
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.25 E-value=5.4e-06 Score=67.67 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=67.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHhcc--CCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceec----CeEEEE
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEP--FGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIV----GRAIKV 425 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~--~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~----g~~i~v 425 (639)
++|+|.|||...+.++|.+++.. .|....+.|+.+ .++...|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988875 367788899988 67778999999999999999999999998775 567888
Q ss_pred Eeec
Q 006608 426 SAVT 429 (639)
Q Consensus 426 ~~~~ 429 (639)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.20 E-value=5.8e-06 Score=67.49 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=65.0
Q ss_pred ccceeeccccccCHhHHHHHHhhc--CCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC----ceeee
Q 006608 249 RTVFAYQICLKADERDVYEFFSRA--GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG----QPVMV 321 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~--G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g----~~l~v 321 (639)
+||+|.|||...|.++|.+++... |...-+-++.|..++.+.|||||-|.+++.|....+ ++|..|.. +...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998853 667778899999999999999999999999999996 99988853 34444
Q ss_pred ccch
Q 006608 322 KPSE 325 (639)
Q Consensus 322 ~~~~ 325 (639)
.++.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 4543
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.17 E-value=1.6e-05 Score=84.30 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC----CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE----TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~----~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i 423 (639)
....++.|||+||++.++++.|...|..||+|..|+|+... ......++||-|.+-.+|..|+..|+|+.+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 34567899999999999999999999999999998886552 33446799999999999999999999999999999
Q ss_pred EEEeeccCC
Q 006608 424 KVSAVTDQS 432 (639)
Q Consensus 424 ~v~~~~~~~ 432 (639)
++-|+....
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999976544
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=5.8e-06 Score=69.29 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=52.6
Q ss_pred ceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCc-----ccCCe
Q 006608 545 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR-----WFAGK 619 (639)
Q Consensus 545 ~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~-----~~~g~ 619 (639)
.+|+|.++..+ ++ .++|+++|+.||.|..|.+.. +...|||.|.+++.|+.|+.++.-. .+.+.
T Consensus 2 ~il~~~g~~~~--~~--------re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~ 70 (105)
T PF08777_consen 2 CILKFSGLGEP--TS--------REDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGK 70 (105)
T ss_dssp -EEEEEE--SS------------HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSS
T ss_pred eEEEEecCCCC--cC--------HHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCc
Confidence 47889998444 33 799999999999999999844 5678999999999999999988754 68899
Q ss_pred EEEEEEcCchhhcccC
Q 006608 620 MITATFMVPQTYEAKF 635 (639)
Q Consensus 620 ~i~v~~~~~~~~~~~~ 635 (639)
.++++....+.-..+|
T Consensus 71 ~~~~~vLeGeeE~~Yw 86 (105)
T PF08777_consen 71 EVTLEVLEGEEEEEYW 86 (105)
T ss_dssp SEEEE---HHHHHHHH
T ss_pred eEEEEECCCHHHHHHH
Confidence 9999998877665554
No 152
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.09 E-value=3.7e-06 Score=78.54 Aligned_cols=161 Identities=15% Similarity=0.199 Sum_probs=110.3
Q ss_pred eEEEcCCCCcCCHHH-H--HHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 354 RLYVGNLHFNMTEDQ-L--RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~-l--~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.+++.++-..+..+- | ...|.-+-.+....++.+..+...+++|+.|.....-.++...-++..++-.+|.+.-.+.
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 345555544444333 2 5667767666677777776666788999999887777777666666666666655443332
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
......
T Consensus 178 wedPsl-------------------------------------------------------------------------- 183 (290)
T KOG0226|consen 178 WEDPSL-------------------------------------------------------------------------- 183 (290)
T ss_pred cCCccc--------------------------------------------------------------------------
Confidence 221000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~- 589 (639)
..-...--.||.+.| -.+.+ .+.|-..|.+|-.....++.++
T Consensus 184 ---------------------------~ew~~~DfRIfcgdl--gNevn--------d~vl~raf~Kfpsf~~akviRdk 226 (290)
T KOG0226|consen 184 ---------------------------AEWDEDDFRIFCGDL--GNEVN--------DDVLARAFKKFPSFQKAKVIRDK 226 (290)
T ss_pred ---------------------------ccCccccceeecccc--ccccc--------HHHHHHHHHhccchhhccccccc
Confidence 000112227888888 44444 5888999999988887777554
Q ss_pred ----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEE
Q 006608 590 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 625 (639)
Q Consensus 590 ----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~ 625 (639)
++|++||.|.++.++..|+..|+|+.++.++|++.-
T Consensus 227 RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 679999999999999999999999999999998753
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.06 E-value=6.5e-06 Score=79.17 Aligned_cols=81 Identities=33% Similarity=0.494 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.....+||+|+.+.++.+.|...|+.||.|..|.|+.+ ..++++||+||+|.+.+.+..|+. |+|..|.|..|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 45678999999999999999999999999999999988 466799999999999999999999 9999999999999987
Q ss_pred ccC
Q 006608 429 TDQ 431 (639)
Q Consensus 429 ~~~ 431 (639)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 655
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.01 E-value=7.2e-07 Score=88.60 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=124.2
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCC-ccCCceeeeccchh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ-PLLGQPVMVKPSEA 326 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~-~~~g~~l~v~~~~~ 326 (639)
..+||+||.+.++..+|..+|...-.-.+-.+++ -.|||||.+.+...|.+|++ ++|. .+.|..+.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998653222222222 35799999999999999997 6664 57899999877654
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 406 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A 406 (639)
++.. ++.+-|.|+|+....+.|-.++..||.+..|......+. .-..-|.|.+.+.+
T Consensus 76 kkqr---------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQR---------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQH 132 (584)
T ss_pred HHHH---------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHH
Confidence 4332 356889999999999999999999999988866544222 22355788999999
Q ss_pred HHHHHHcCCceecCeEEEEEeeccCCcc
Q 006608 407 RNALNLNGQLEIVGRAIKVSAVTDQSGL 434 (639)
Q Consensus 407 ~~A~~~l~g~~i~g~~i~v~~~~~~~~~ 434 (639)
..||..|+|..+....+.|.|..+....
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchhhhh
Confidence 9999999999999999999998776543
No 155
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.89 E-value=4.2e-05 Score=81.27 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=70.3
Q ss_pred CCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC--------CCccEEEEecchHHHHHH
Q 006608 536 IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--------SAGFVYLRFENTQSAFAA 607 (639)
Q Consensus 536 ~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~--------~~g~afV~F~s~e~A~~A 607 (639)
.+....+.+++|||.|| +..++ +..|...|..||.|.+|+|+-+ ..-|+||-|-+-.+|++|
T Consensus 166 sfDdgDP~TTNlyv~Nl--npsv~--------E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era 235 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNL--NPSVD--------ENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERA 235 (877)
T ss_pred cCCCCCCcccceeeecC--Ccccc--------HHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHH
Confidence 35555678899999999 55555 8999999999999999988432 467999999999999999
Q ss_pred HHHhcCcccCCeEEEEEEc
Q 006608 608 QRALHGRWFAGKMITATFM 626 (639)
Q Consensus 608 ~~~lng~~~~g~~i~v~~~ 626 (639)
++.|+|.+|.+..+++-|.
T Consensus 236 ~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 236 LKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred HHHhcceeeeeeeeeeccc
Confidence 9999999999999999986
No 156
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.88 E-value=1.9e-05 Score=82.01 Aligned_cols=79 Identities=29% Similarity=0.472 Sum_probs=66.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
..|||.|||.+++..+|.++|..||.|....|.... .+...+||||+|.+...+..||++- -+.|+++.|.|.--...
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 449999999999999999999999999888776542 3333489999999999999999866 67899999999875544
Q ss_pred C
Q 006608 432 S 432 (639)
Q Consensus 432 ~ 432 (639)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.85 E-value=0.0001 Score=71.90 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=66.5
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCC--CeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G--~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+|||+||-+++|.++|.+.+...| .+..++++.+ ..|+++|||+|...+.....+.|+.|....|.|+.-.|..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 46899999999999999999999887 3466677766 58999999999999999999999999999999876555544
Q ss_pred c
Q 006608 429 T 429 (639)
Q Consensus 429 ~ 429 (639)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.76 E-value=2.5e-05 Score=77.14 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=74.5
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVR--------DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 316 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~--------~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g 316 (639)
...-+|||.+||..+++.+|.++|.++|.|. .|+|.+++.|+..||-|.|.|.+...|++|+. +++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3556899999999999999999999999885 58889999999999999999999999999998 99999999
Q ss_pred ceeeeccchhhh
Q 006608 317 QPVMVKPSEAEK 328 (639)
Q Consensus 317 ~~l~v~~~~~~~ 328 (639)
..|+|-.+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999997665433
No 159
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.73 E-value=0.00014 Score=56.29 Aligned_cols=70 Identities=30% Similarity=0.332 Sum_probs=47.8
Q ss_pred ceEEEcCCCCcCCHHH----HHHHhccCC-CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 353 RRLYVGNLHFNMTEDQ----LRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~----l~~~f~~~G-~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..|+|.|||...+... |++++..+| .|..|. .+.|+|.|.+++.|..|++.|+|..+.|..|.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4699999999887755 456677886 565552 24699999999999999999999999999999999
Q ss_pred eccC
Q 006608 428 VTDQ 431 (639)
Q Consensus 428 ~~~~ 431 (639)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7543
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.72 E-value=5.2e-05 Score=79.03 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhh-hcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCccc--
Q 006608 540 IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS-KFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF-- 616 (639)
Q Consensus 540 ~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~-~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~-- 616 (639)
-...+.+|+|.||+-|++ ...|+.++. .+|.|+.+ ++..-+.-|||.|.++++|...+.+|||..+
T Consensus 440 R~~~SnvlhI~nLvRPFT----------lgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFT----------LGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccch----------HHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 356788999999999987 789999999 56666666 5444566799999999999999999999985
Q ss_pred -CCeEEEEEEcCchhhccc
Q 006608 617 -AGKMITATFMVPQTYEAK 634 (639)
Q Consensus 617 -~g~~i~v~~~~~~~~~~~ 634 (639)
+++.|.|.|+....+..|
T Consensus 509 sNPK~L~adf~~~deld~h 527 (718)
T KOG2416|consen 509 SNPKHLIADFVRADELDKH 527 (718)
T ss_pred CCCceeEeeecchhHHHHH
Confidence 799999999999888754
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.55 E-value=0.0002 Score=58.91 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=52.2
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEE------------EecCCCccEEEEecchHHHHHHHHHh
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF------------VEKDSAGFVYLRFENTQSAFAAQRAL 611 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~------------v~~~~~g~afV~F~s~e~A~~A~~~l 611 (639)
...|.|.++ |... ...|..+|+.||.|+... -...+..+..|+|+++.+|++||. .
T Consensus 6 ~~wVtVFGf--p~~~---------~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~ 73 (100)
T PF05172_consen 6 ETWVTVFGF--PPSA---------SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-K 73 (100)
T ss_dssp CCEEEEE-----GGG---------HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-T
T ss_pred CeEEEEEcc--CHHH---------HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-h
Confidence 446888888 5432 589999999999998775 123356799999999999999998 5
Q ss_pred cCcccCCeEEE-EEEcC
Q 006608 612 HGRWFAGKMIT-ATFMV 627 (639)
Q Consensus 612 ng~~~~g~~i~-v~~~~ 627 (639)
||..|+|..|. |-|++
T Consensus 74 NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp TTEEETTCEEEEEEE-H
T ss_pred CCeEEcCcEEEEEEEcH
Confidence 99999987554 66663
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.53 E-value=9.4e-05 Score=74.36 Aligned_cols=67 Identities=22% Similarity=0.388 Sum_probs=55.3
Q ss_pred CCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC------------------CCccEEEEe
Q 006608 537 FDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD------------------SAGFVYLRF 598 (639)
Q Consensus 537 ~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~------------------~~g~afV~F 598 (639)
+....-++++|++.|| |..-. .+.|.++|+.||.|..|.|+++ .+-||+|+|
T Consensus 224 ~~~eel~srtivaenL--P~Dh~--------~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEy 293 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENL--PLDHS--------YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEY 293 (484)
T ss_pred ccccccccceEEEecC--CcchH--------HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhh
Confidence 4444568899999999 54322 6999999999999999999665 146999999
Q ss_pred cchHHHHHHHHHhcC
Q 006608 599 ENTQSAFAAQRALHG 613 (639)
Q Consensus 599 ~s~e~A~~A~~~lng 613 (639)
++.+.|.+|.+.|+-
T Consensus 294 e~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 294 EEVEAARKARELLNP 308 (484)
T ss_pred hhhHHHHHHHHhhch
Confidence 999999999998853
No 163
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.47 E-value=0.00023 Score=59.67 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=44.1
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC-----CceecCeEEEEEe
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG-----QLEIVGRAIKVSA 427 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~-----g~~i~g~~i~v~~ 427 (639)
..|.|.+++..++.++|+++|..||.|..|.+....+ .|||.|.+++.|..|+..+. ++.|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 4688999999999999999999999999999987633 69999999999999997543 3456666666555
Q ss_pred e
Q 006608 428 V 428 (639)
Q Consensus 428 ~ 428 (639)
.
T Consensus 77 L 77 (105)
T PF08777_consen 77 L 77 (105)
T ss_dssp -
T ss_pred C
Confidence 3
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.47 E-value=0.001 Score=58.05 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=50.7
Q ss_pred hhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhc
Q 006608 565 MDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 632 (639)
Q Consensus 565 ~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~ 632 (639)
.++..+|.+.|..||.|+-+++.. +..+|+|.+-+.|.+|+. |+|..++|++|+|.+-++.-..
T Consensus 47 d~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 47 DNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-------
T ss_pred HHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHHH
Confidence 345789999999999999988865 479999999999999998 8999999999999997765443
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00041 Score=72.11 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=66.3
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCcccC-
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFA- 617 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~- 617 (639)
-..+|+|.|++.-. +.-..-|..-|..+|+++|.|+.+.++.. .+|++|++|+++.+|+.|++.|||+.|.
T Consensus 57 ~D~vVvv~g~PvV~----~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVG----PARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccC----hhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 44599999993322 22233456889999999999999999643 5799999999999999999999999985
Q ss_pred CeEEEEEEcCch
Q 006608 618 GKMITATFMVPQ 629 (639)
Q Consensus 618 g~~i~v~~~~~~ 629 (639)
+++..|..++.-
T Consensus 133 nHtf~v~~f~d~ 144 (698)
T KOG2314|consen 133 NHTFFVRLFKDF 144 (698)
T ss_pred cceEEeehhhhH
Confidence 788888876643
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.39 E-value=0.00038 Score=50.28 Aligned_cols=52 Identities=23% Similarity=0.538 Sum_probs=42.5
Q ss_pred ceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHH
Q 006608 545 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQ 608 (639)
Q Consensus 545 ~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~ 608 (639)
+.|.|.+. +.. ..+.|..+|..||.|..+.++ ...-++||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf--~~~---------~~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF--PPD---------LAEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE--Cch---------HHHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 36778888 332 257888899999999999996 34668999999999999985
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.35 E-value=0.00026 Score=70.12 Aligned_cols=85 Identities=22% Similarity=0.322 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeE--------EEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--------LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~--------~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
.....+|||.+||..+++++|.++|.++|.|. .|.|.++ .|+..+|-|.|.|.+...|+.|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34457899999999999999999999999773 4556666 69999999999999999999999999999999
Q ss_pred CeEEEEEeeccCCc
Q 006608 420 GRAIKVSAVTDQSG 433 (639)
Q Consensus 420 g~~i~v~~~~~~~~ 433 (639)
+.+|+|.++.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999876663
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.0026 Score=60.14 Aligned_cols=100 Identities=29% Similarity=0.397 Sum_probs=80.1
Q ss_pred HHHHH-HhcCCccCCceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE
Q 006608 303 VPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL 381 (639)
Q Consensus 303 a~~al-~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~ 381 (639)
|..|- +|++....|+.+.|.++. ...|+|.||...+.-+.+.+.|..||+|..
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~--------------------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~ 60 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM--------------------------HAELYVVNLMQGASNDLLEQAFRRFGPIER 60 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec--------------------------cceEEEEecchhhhhHHHHHhhhhcCccch
Confidence 34444 489999999999998852 267999999999999999999999999988
Q ss_pred EEeccCCCCCcceEEEEEecCHHHHHHHHHHcC--Cc--eecCeEEEEEee
Q 006608 382 VQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QL--EIVGRAIKVSAV 428 (639)
Q Consensus 382 v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~--g~--~i~g~~i~v~~~ 428 (639)
..++.+..+...+-++|+|.+...|.+|+..+. |+ ...+.++.|..+
T Consensus 61 av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 61 AVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred heeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 777777777788899999999999999998763 22 334555555544
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.17 E-value=0.00086 Score=64.16 Aligned_cols=78 Identities=22% Similarity=0.177 Sum_probs=59.7
Q ss_pred CceEEEcCCC--CcC---CHHHHHHHhccCCCeEEEEeccCCCC--CcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 352 ARRLYVGNLH--FNM---TEDQLRQVFEPFGTVELVQLPLDETG--HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 352 ~~~l~v~nlp--~~~---~e~~l~~~f~~~G~i~~v~i~~~~~~--~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
++.|++.|+- -.+ -++++++.+++||.|..|.|...+.. .-.--.||+|...++|.+|+..|||..|+|+.|.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 4556666663 223 34688999999999988877665311 1123589999999999999999999999999999
Q ss_pred EEeec
Q 006608 425 VSAVT 429 (639)
Q Consensus 425 v~~~~ 429 (639)
..|-.
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 98854
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.10 E-value=0.0002 Score=67.65 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=55.4
Q ss_pred HHHHHHhc-cCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 367 DQLRQVFE-PFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 367 ~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
++|...|+ +||+|..+.+-.+-..+..|.+||.|...++|++|++.||+.+|.|++|.+.++.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 45555555 99999988776654445689999999999999999999999999999999999765443
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.09 E-value=0.0012 Score=64.30 Aligned_cols=82 Identities=21% Similarity=0.388 Sum_probs=58.9
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCC------Cc-c-EEEEecchHHHHHHHHHhcCcc
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDS------AG-F-VYLRFENTQSAFAAQRALHGRW 615 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~------~g-~-afV~F~s~e~A~~A~~~lng~~ 615 (639)
..-+||-+| +...-+++..--| -=.++|..||.|..|.|.+.. .+ . +||+|.+.++|..||++++|..
T Consensus 114 KNLvYVigi--~pkva~Ee~~~vL--k~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 114 KNLVYVIGI--PPKVADEEVAPVL--KRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred cceeEEecC--CCCCCcccccccc--cchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 346778788 3333332221111 124789999999999985431 12 2 4999999999999999999999
Q ss_pred cCCeEEEEEEcCch
Q 006608 616 FAGKMITATFMVPQ 629 (639)
Q Consensus 616 ~~g~~i~v~~~~~~ 629 (639)
++|+.|++.|-+.+
T Consensus 190 ~DGr~lkatYGTTK 203 (480)
T COG5175 190 LDGRVLKATYGTTK 203 (480)
T ss_pred ccCceEeeecCchH
Confidence 99999999996654
No 172
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.07 E-value=0.00059 Score=66.66 Aligned_cols=77 Identities=16% Similarity=0.281 Sum_probs=66.5
Q ss_pred cccccceeeccccccCHhHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G--~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
.....+|||||-|.+|.+||.+.+...| .+.++++..+...|.++|||+|...+....++.|+ |-...|.|+.-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3445699999999999999999999877 67888888888889999999999999999999998 77788888766554
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0014 Score=68.35 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=65.4
Q ss_pred CceEEEcCCCCcC------CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec-CeEEE
Q 006608 352 ARRLYVGNLHFNM------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIK 424 (639)
Q Consensus 352 ~~~l~v~nlp~~~------~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~-g~~i~ 424 (639)
..+|+|.|+|.-- -..-|..+|+++|+|..+.++.+..|..+||.|++|.+..+|..|++.|||..|+ .+...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4688999998531 2245678899999999999998876679999999999999999999999999887 45677
Q ss_pred EEeeccC
Q 006608 425 VSAVTDQ 431 (639)
Q Consensus 425 v~~~~~~ 431 (639)
|...++-
T Consensus 138 v~~f~d~ 144 (698)
T KOG2314|consen 138 VRLFKDF 144 (698)
T ss_pred eehhhhH
Confidence 7665543
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.95 E-value=0.0017 Score=63.29 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCcCCHHHH------HHHhccCCCeEEEEeccC-CCCCc-ce--EEEEEecCHHHHHHHHHHcCCceec
Q 006608 350 GGARRLYVGNLHFNMTEDQL------RQVFEPFGTVELVQLPLD-ETGHC-KG--FGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l------~~~f~~~G~i~~v~i~~~-~~~~~-~g--~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
....-+||.+|++.+..+++ .++|.+||.|..|.+.+. ....+ .+ -+||.|.+.++|..||...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 33456899999988766552 378999999999998876 22111 22 3599999999999999999999999
Q ss_pred CeEEEEEeeccCCc
Q 006608 420 GRAIKVSAVTDQSG 433 (639)
Q Consensus 420 g~~i~v~~~~~~~~ 433 (639)
|+.|+..|...+..
T Consensus 192 Gr~lkatYGTTKYC 205 (480)
T COG5175 192 GRVLKATYGTTKYC 205 (480)
T ss_pred CceEeeecCchHHH
Confidence 99999999887643
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.92 E-value=0.00085 Score=70.32 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=64.9
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhc-cCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCcee---cCeEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFE-PFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI---VGRAI 423 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~-~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i---~g~~i 423 (639)
....+..|+|.||--.+|.-+|+.++. ..|.|..++|-+- +..|||.|.+.++|.+...+|||+.+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 346678999999999999999999999 5666666644333 44799999999999999999999876 57889
Q ss_pred EEEeeccC
Q 006608 424 KVSAVTDQ 431 (639)
Q Consensus 424 ~v~~~~~~ 431 (639)
.|.|+...
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 99997643
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.84 E-value=0.0067 Score=50.02 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=52.6
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEE-eccC-------CCCCcceEEEEEecCHHHHHHHHHHcCCceecCe-E
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQ-LPLD-------ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-A 422 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~-i~~~-------~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~-~ 422 (639)
..-|.|-++|.. ....|.+.|+.||.|.... +... +......+..|.|.++.+|.+||. .||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 356888899887 6777999999999997775 1111 001124589999999999999998 788999885 5
Q ss_pred EEEEeecc
Q 006608 423 IKVSAVTD 430 (639)
Q Consensus 423 i~v~~~~~ 430 (639)
|-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 66777743
No 177
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.80 E-value=0.0019 Score=46.68 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=42.0
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHH
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI 307 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al 307 (639)
+.|-|.|.++...+ .|..+|..||.|.++.+.. ..-+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46788899877664 4555888999999988863 3448999999999999986
No 178
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=96.68 E-value=0.00092 Score=51.58 Aligned_cols=26 Identities=62% Similarity=0.897 Sum_probs=0.0
Q ss_pred CCCCCCCcccchhhHHHHHHHhhhcC
Q 006608 446 DDDEGGGLSLNARSRALLMQKLDRSG 471 (639)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (639)
++.+.+|+.+++..+..+|++++...
T Consensus 4 dd~d~~G~~l~a~sR~~LM~KLA~~~ 29 (73)
T PF15519_consen 4 DDDDRGGVNLNATSRAALMAKLARGD 29 (73)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 35667899999999999999998754
No 179
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.64 E-value=0.0013 Score=62.13 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=60.2
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-C--------CCc----ceEEEEEecCHHHHHHHHHHcCCcee
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-T--------GHC----KGFGFVQFARLEDARNALNLNGQLEI 418 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~--------~~~----~g~afVef~~~~~A~~A~~~l~g~~i 418 (639)
+.+|||++||+.+...-|+++|..||.|-.|.|.... + |.. -.-|+|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 5689999999999999999999999999999886542 2 111 12389999999999999999999999
Q ss_pred cCeE
Q 006608 419 VGRA 422 (639)
Q Consensus 419 ~g~~ 422 (639)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.51 E-value=0.0012 Score=62.20 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=61.1
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCC--------CCcccE----EEEEEcccccHHHHHH-hcCCc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS--------RRSKGV----GYVEFYDVMSVPMAIA-LSGQP 313 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~--------~~~~g~----afV~f~~~~~a~~al~-~~~~~ 313 (639)
..-.|||++||+.+...-|+++|++||.|-.|.|.....+ |.+.++ |+|+|.+...|..+.. ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999999876655 333333 7899999999998886 99999
Q ss_pred cCCcee
Q 006608 314 LLGQPV 319 (639)
Q Consensus 314 ~~g~~l 319 (639)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 988643
No 181
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.07 E-value=0.0051 Score=62.27 Aligned_cols=67 Identities=21% Similarity=0.357 Sum_probs=56.6
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC---C---CCC--------cceEEEEEecCHHHHHHHHHHcCC
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD---E---TGH--------CKGFGFVQFARLEDARNALNLNGQ 415 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~---~---~~~--------~~g~afVef~~~~~A~~A~~~l~g 415 (639)
.++++|.+.|||.+-..+.|.++|..+|.|..|.|.+. + .+. .+-+|||+|...+.|.+|.++|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999999999999999999999998765 1 111 145799999999999999998865
Q ss_pred c
Q 006608 416 L 416 (639)
Q Consensus 416 ~ 416 (639)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.024 Score=49.72 Aligned_cols=57 Identities=32% Similarity=0.428 Sum_probs=46.5
Q ss_pred HHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 367 DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 367 ~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
.+|.+.|..||.+.-|+++.+ ..+|.|.+-..|.+|+. ++|..++|+.|.|..-.+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 477888999999988888754 58999999999999998 8899999999999986543
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.59 E-value=0.058 Score=46.48 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=46.3
Q ss_pred HHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEc
Q 006608 569 EDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 626 (639)
Q Consensus 569 ~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~ 626 (639)
..|...++.||.|.+|.+.. +..|.|.|.+..+|-+|+.+++. ..-|..+.++|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 56667789999999999864 56899999999999999999877 566778888873
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.54 E-value=0.069 Score=41.75 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=40.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ 415 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g 415 (639)
.+.+| .+|......||.++|.+||.|.--.|. + .-|||...+.+.|..|+..+..
T Consensus 10 HVFhl-tFPkeWK~~DI~qlFspfG~I~VsWi~-d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHL-TFPKEWKTSDIYQLFSPFGQIYVSWIN-D------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEE-E--TT--HHHHHHHCCCCCCEEEEEEC-T------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEE-eCchHhhhhhHHHHhccCCcEEEEEEc-C------CcEEEEeecHHHHHHHHHHhcc
Confidence 44555 599999999999999999998544443 2 2699999999999999987753
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.45 E-value=0.019 Score=58.99 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=53.1
Q ss_pred HHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 568 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
..+|..+|.+||.|..|.|.-. .--|.|+|.+..+|-.|.. .++..|+|+.|+|-|.++
T Consensus 387 ~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 387 IADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred HhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 7999999999999999998443 5569999999999988887 699999999999999877
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=0.1 Score=50.69 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=53.5
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEE-
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 622 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~- 622 (639)
..-|-|.++ |... -.-|..+|++||.|+..... ..--+.+|.|.+.-+|++||.+ ||++|+|.++.
T Consensus 197 D~WVTVfGF--ppg~---------~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGF--PPGQ---------VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIG 263 (350)
T ss_pred cceEEEecc--Cccc---------hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEe
Confidence 345667777 3221 47889999999999887765 3335889999999999999995 99999988653
Q ss_pred EEEcC
Q 006608 623 ATFMV 627 (639)
Q Consensus 623 v~~~~ 627 (639)
|.-++
T Consensus 264 VkpCt 268 (350)
T KOG4285|consen 264 VKPCT 268 (350)
T ss_pred eeecC
Confidence 44433
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.06 E-value=0.053 Score=50.34 Aligned_cols=60 Identities=28% Similarity=0.315 Sum_probs=47.1
Q ss_pred HHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhc--CcccCCeEEEEEEcCc
Q 006608 568 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH--GRWFAGKMITATFMVP 628 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~ln--g~~~~g~~i~v~~~~~ 628 (639)
...|.++|..|+.+..+.+.+ +-+-+.|.|.+.+.|+.|...|+ +..|.|..|+|-|+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 689999999999998887755 45678999999999999999999 9999999999999843
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.43 E-value=0.65 Score=39.18 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=56.4
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC---eEEEEEe
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG---RAIKVSA 427 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g---~~i~v~~ 427 (639)
+..+.+...|..++.++|..+.+.+- .|..++|+++... .+-.++++|.+...|......+||..|+. ..++|-|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 44555656666677777877776664 5678899888442 36689999999999999999999998763 4455555
Q ss_pred ec
Q 006608 428 VT 429 (639)
Q Consensus 428 ~~ 429 (639)
..
T Consensus 92 V~ 93 (110)
T PF07576_consen 92 VK 93 (110)
T ss_pred EE
Confidence 44
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.26 E-value=0.072 Score=57.38 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=57.3
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
++..++||+|+..-. . .+-++-+...+|.|.++.... |+|+.|..+..+..|+..++-..++|..+
T Consensus 38 ~~~~~vfv~~~~~~~--s--------~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLV--S--------QEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCceeEecchhhhh--h--------HHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 456689999993322 2 577778888999999998755 89999999999999999999999988877
Q ss_pred EEEE
Q 006608 622 TATF 625 (639)
Q Consensus 622 ~v~~ 625 (639)
.+-.
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 6543
No 190
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.95 E-value=0.0049 Score=65.94 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=100.9
Q ss_pred ccccCCCCCCcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCC
Q 006608 234 KKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 312 (639)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~ 312 (639)
...+..+...+-.+.-+|||+||...+..+-++.++..+|-|..+.... |||..|..+..+..|+. ++..
T Consensus 26 ~~~p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 26 YVVPIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTEL 96 (668)
T ss_pred cccCCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhccc
Confidence 3344555566667778999999999999999999999999988776653 99999999999999996 8888
Q ss_pred ccCCceeeeccchhhhhhhccccccCCCCCCCCCCCC--CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCC
Q 006608 313 PLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYS--GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETG 390 (639)
Q Consensus 313 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~ 390 (639)
.++|..+.++.-...-.......... ........ ...+.++|.++|....+......|.-.+.+.....+.....
T Consensus 97 ~~~~~kl~~~~d~q~~~n~~k~~~~~---~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~d~ 173 (668)
T KOG2253|consen 97 NIDDQKLIENVDEQTIENADKEKSIA---NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEADD 173 (668)
T ss_pred CCCcchhhccchhhhhcCccccccch---hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHHHH
Confidence 88888887765311110000000000 00000111 11456778888877777777666665544433333333222
Q ss_pred CcceEEEEEecCHHHHHHH
Q 006608 391 HCKGFGFVQFARLEDARNA 409 (639)
Q Consensus 391 ~~~g~afVef~~~~~A~~A 409 (639)
+..-++|-+|.+......+
T Consensus 174 h~~e~~~~~~~s~~~~~~~ 192 (668)
T KOG2253|consen 174 HCLELEKTETESNSALSKE 192 (668)
T ss_pred HHHHHHHhhcccccccCcc
Confidence 2233444444444433333
No 191
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.77 E-value=0.16 Score=48.33 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=50.8
Q ss_pred eEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEE--ecC--CCccEEEEecchHHHHHHHHHhcCcc----cC
Q 006608 546 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV--EKD--SAGFVYLRFENTQSAFAAQRALHGRW----FA 617 (639)
Q Consensus 546 ~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v--~~~--~~g~afV~F~s~e~A~~A~~~lng~~----~~ 617 (639)
.|+|.|| ..-+. .+.+...|+.||.|....+ +.. +.+-++|.|...-.|.+|+...+-.- ..
T Consensus 33 ~l~V~nl--~~~~s--------ndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~ 102 (275)
T KOG0115|consen 33 ELYVVNL--MQGAS--------NDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTG 102 (275)
T ss_pred eEEEEec--chhhh--------hHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCC
Confidence 7999999 33333 6889999999999987444 222 45777999999999999999875333 34
Q ss_pred CeEEEEEE
Q 006608 618 GKMITATF 625 (639)
Q Consensus 618 g~~i~v~~ 625 (639)
+.++.|..
T Consensus 103 ~~p~~VeP 110 (275)
T KOG0115|consen 103 GRPVGVEP 110 (275)
T ss_pred CCccCCCh
Confidence 55555544
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=0.24 Score=48.24 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=57.2
Q ss_pred eEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe-EEEEEeeccCC
Q 006608 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-AIKVSAVTDQS 432 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~-~i~v~~~~~~~ 432 (639)
=|.|.++|+ -....|..+|++||.|.......+ | .+.+|.|.+..+|.+||. .+|..|+|. .|=|..|.++.
T Consensus 199 WVTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~~n--g---NwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 199 WVTVFGFPP-GQVSIVLNLFSRCGEVVKHVTPSN--G---NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eEEEeccCc-cchhHHHHHHHhhCeeeeeecCCC--C---ceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHH
Confidence 355666665 456789999999999988877633 2 389999999999999998 677888875 46778877776
Q ss_pred cc
Q 006608 433 GL 434 (639)
Q Consensus 433 ~~ 434 (639)
..
T Consensus 272 vi 273 (350)
T KOG4285|consen 272 VI 273 (350)
T ss_pred Hh
Confidence 43
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.65 E-value=0.29 Score=36.31 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=44.1
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccC---CCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHc
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPF---GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 413 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~---G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l 413 (639)
..|.|.++. .++.++|+.+|..| .....|.++.+. -|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 579999985 58889999999998 234678888763 4899999999999999765
No 194
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.91 E-value=3.4 Score=40.56 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=62.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC--------CCCcceEEEEEecCHHHHHHHH----HHcCC--ce
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--------TGHCKGFGFVQFARLEDARNAL----NLNGQ--LE 417 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~--------~~~~~g~afVef~~~~~A~~A~----~~l~g--~~ 417 (639)
++.|.+.|+...++-..+...|.+||+|+.|.++.+. .......+++.|-+.+.+.... +.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999998764 2233467899999988766553 33322 24
Q ss_pred ecCeEEEEEeeccCC
Q 006608 418 IVGRAIKVSAVTDQS 432 (639)
Q Consensus 418 i~g~~i~v~~~~~~~ 432 (639)
+....|.|.|+.-..
T Consensus 95 L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 95 LKSESLTLSFVSLNY 109 (309)
T ss_pred cCCcceeEEEEEEec
Confidence 667888888877543
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.57 E-value=0.48 Score=35.19 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=41.2
Q ss_pred ceEEecccCCCCCCCchhhHhhHHHHHHHHhhhc---CcEEEEEEecCCCccEEEEecchHHHHHHHHHh
Q 006608 545 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF---GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRAL 611 (639)
Q Consensus 545 ~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~---G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~l 611 (639)
..|+|.++ . +++ .+||+.+|..| .....|..+.+ ..|=|-|.+.+.|.+||.+|
T Consensus 6 eavhirGv--d-~ls--------T~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV--D-ELS--------TDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC--C-CCC--------HHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 47899998 2 233 58999999999 12446776554 36899999999999999875
No 196
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.45 E-value=0.51 Score=50.22 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCCCceEEEcCCCCc-CCHHHHHHHhccC----CCeEEEEeccCCC-----------CC---------------------
Q 006608 349 SGGARRLYVGNLHFN-MTEDQLRQVFEPF----GTVELVQLPLDET-----------GH--------------------- 391 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~-~~e~~l~~~f~~~----G~i~~v~i~~~~~-----------~~--------------------- 391 (639)
...++.|-|.||.|. +...+|.-+|..| |.|..|.|..... |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456889999999986 6888999888754 5888888754321 11
Q ss_pred ----------------cceEEEEEecCHHHHHHHHHHcCCceec--CeEEEEEeeccCCc
Q 006608 392 ----------------CKGFGFVQFARLEDARNALNLNGQLEIV--GRAIKVSAVTDQSG 433 (639)
Q Consensus 392 ----------------~~g~afVef~~~~~A~~A~~~l~g~~i~--g~~i~v~~~~~~~~ 433 (639)
...||.|+|.+++.|.+....|.|+.|. +..|-+.|+.+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCc
Confidence 1258999999999999999999999997 56777888776654
No 197
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=92.44 E-value=0.21 Score=52.75 Aligned_cols=8 Identities=38% Similarity=1.003 Sum_probs=3.1
Q ss_pred HHHhccCC
Q 006608 370 RQVFEPFG 377 (639)
Q Consensus 370 ~~~f~~~G 377 (639)
.+++.+||
T Consensus 521 RevLKKyG 528 (752)
T KOG0670|consen 521 REVLKKYG 528 (752)
T ss_pred HHHHHHhC
Confidence 33333443
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.20 E-value=0.59 Score=40.52 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=54.5
Q ss_pred CCCCceEEEcCCCCcC----CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 349 SGGARRLYVGNLHFNM----TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~----~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
.++..+|.|.=|..++ +...|...++.||+|..|.+.- +.-|.|.|.+..+|-+|+.+++. ...|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3556778886555544 3455667788999999998753 33699999999999999998875 46677777
Q ss_pred EEee
Q 006608 425 VSAV 428 (639)
Q Consensus 425 v~~~ 428 (639)
..|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 7764
No 199
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.08 E-value=0.45 Score=52.79 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCccc--CCeEEEEEEcCchhhcc
Q 006608 568 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF--AGKMITATFMVPQTYEA 633 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~--~g~~i~v~~~~~~~~~~ 633 (639)
-.-|..+|++||.|.++...++ ---|.|+|.+++.|..|+.+|+|+.+ -|-+.+|.|+....|..
T Consensus 312 SssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred HHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 5789999999999999876443 23589999999999999999999984 58899999998776643
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.07 E-value=0.29 Score=45.30 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=50.7
Q ss_pred CceEEEcCCCCcCCHHHHHHHhcc-CCCe---EEEE--eccCCCC-CcceEEEEEecCHHHHHHHHHHcCCceecC----
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEP-FGTV---ELVQ--LPLDETG-HCKGFGFVQFARLEDARNALNLNGQLEIVG---- 420 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~-~G~i---~~v~--i~~~~~~-~~~g~afVef~~~~~A~~A~~~l~g~~i~g---- 420 (639)
..+|.|++||+.++++++.+.+.+ ++.. ..+. ....... ..-.-|||.|.+.+++...+..++|..|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999998887 6655 2332 1111111 123469999999999999999999987742
Q ss_pred -eEEEEEeecc
Q 006608 421 -RAIKVSAVTD 430 (639)
Q Consensus 421 -~~i~v~~~~~ 430 (639)
....|.++..
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3455666554
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.97 E-value=0.29 Score=51.65 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=52.5
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhh--cCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCc--ccCC
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSK--FGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR--WFAG 618 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~--~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~--~~~g 618 (639)
..|+|+|.-| |+++- +++|+.+|+. +-.+++|.+-.+. -=||+|++.++|+.|.+.|... .|-|
T Consensus 174 kRcIvilREI--pettp--------~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 174 KRCIVILREI--PETTP--------IEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred ceeEEEEeec--CCCCh--------HHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 4557778888 65544 8999999985 7889999884432 3599999999999999987643 3667
Q ss_pred eEEEEE
Q 006608 619 KMITAT 624 (639)
Q Consensus 619 ~~i~v~ 624 (639)
+.|...
T Consensus 242 KpImAR 247 (684)
T KOG2591|consen 242 KPIMAR 247 (684)
T ss_pred cchhhh
Confidence 766543
No 202
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.93 E-value=1.3 Score=37.34 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=44.0
Q ss_pred HHHHHHHhhhcC-cEEEEEEecCCCc---cEEEEecchHHHHHHHHHhcCcccC---CeEEEEEEcC
Q 006608 568 KEDVEGECSKFG-KLKHIFVEKDSAG---FVYLRFENTQSAFAAQRALHGRWFA---GKMITATFMV 627 (639)
Q Consensus 568 ~~dl~~~f~~~G-~V~~v~v~~~~~g---~afV~F~s~e~A~~A~~~lng~~~~---g~~i~v~~~~ 627 (639)
.++|..+.+.+- .|..++|.+++.. -+.|+|.+.+.|..-...+||+.|+ ..+-+|-|+.
T Consensus 27 ~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~ 93 (110)
T PF07576_consen 27 SDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVK 93 (110)
T ss_pred HHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEE
Confidence 466666666654 4667888776554 5699999999999999999999975 4445555543
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.72 E-value=0.44 Score=44.27 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=46.2
Q ss_pred CCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC--CceecCeEEEEEeecc
Q 006608 364 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKVSAVTD 430 (639)
Q Consensus 364 ~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~--g~~i~g~~i~v~~~~~ 430 (639)
-..+.|.++|..|+.+..+.+++. -+-+.|.|.+.+.|..|...|+ +..|.|..|.|.|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 355789999999999888877754 3468999999999999999999 9999999999999843
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.31 E-value=0.12 Score=41.37 Aligned_cols=72 Identities=19% Similarity=0.135 Sum_probs=46.0
Q ss_pred EEEEEcccccHHHHHHhc--CCccCCceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHH
Q 006608 293 GYVEFYDVMSVPMAIALS--GQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR 370 (639)
Q Consensus 293 afV~f~~~~~a~~al~~~--~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~ 370 (639)
|+|+|....-|+..+.+. ...+.+..+.|............-.. ......++|.|.|||..+.+++|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv----------~~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQV----------FSGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEE----------EEcccCCEEEEeCCCCCCChhhhe
Confidence 689999999999999744 44556666655432211111000000 012446899999999999999998
Q ss_pred HHhc
Q 006608 371 QVFE 374 (639)
Q Consensus 371 ~~f~ 374 (639)
+.++
T Consensus 71 D~Le 74 (88)
T PF07292_consen 71 DKLE 74 (88)
T ss_pred eeEE
Confidence 7754
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.14 E-value=0.18 Score=46.72 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=43.6
Q ss_pred ccccceeeccccccCHhHHHHHHhh-cCCe---eEEEEeecCC-CC-CcccEEEEEEcccccHHHHHH-hcCCccC
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSR-AGKV---RDVRLIMDRN-SR-RSKGVGYVEFYDVMSVPMAIA-LSGQPLL 315 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~-~G~i---~~~~i~~d~~-~~-~~~g~afV~f~~~~~a~~al~-~~~~~~~ 315 (639)
....|.|++||+++|++++.+.+.. ++.. ..+.-..... .. ..-.-|||.|.+.+++...+. ++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4468999999999999999987776 5544 2332112211 11 133469999999999999886 8886653
No 206
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.02 E-value=0.42 Score=50.44 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhcc--CCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCC--ceecCeEEEEE
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEP--FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ--LEIVGRAIKVS 426 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~--~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g--~~i~g~~i~v~ 426 (639)
..+.|+|..||..+-+++|+.||.. +-.++.|.+-.+.. =||.|.+..+|+.|++.|.. ..|.|++|.+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3577889999999999999999985 56778887765422 49999999999999976643 36778887665
Q ss_pred e
Q 006608 427 A 427 (639)
Q Consensus 427 ~ 427 (639)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 4
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.92 E-value=0.14 Score=53.01 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=63.9
Q ss_pred ccccccceeeccccc-cCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLK-ADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~-~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
..+.+.|-+.-.|+. -|.++|...|.+||.|.+|++-.. .-.|.|+|.+.-+|-.|...++..|+++.|+|-|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 456677777778887 467889999999999999998543 3479999999999999999999999999999977
Q ss_pred chh
Q 006608 324 SEA 326 (639)
Q Consensus 324 ~~~ 326 (639)
..+
T Consensus 443 hnp 445 (526)
T KOG2135|consen 443 HNP 445 (526)
T ss_pred ecC
Confidence 543
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.73 E-value=0.69 Score=47.78 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=62.7
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC---eEEEEEe
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG---RAIKVSA 427 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g---~~i~v~~ 427 (639)
+..|+|-.+|..++..||..++..+- .|..|+|+++..+ .+-.++|.|.+.++|....+.+||..|+. -.++|-|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 67899999999999999999998875 6789999997433 24578999999999999999999998764 3444444
Q ss_pred ec
Q 006608 428 VT 429 (639)
Q Consensus 428 ~~ 429 (639)
+.
T Consensus 153 V~ 154 (493)
T KOG0804|consen 153 VD 154 (493)
T ss_pred EE
Confidence 44
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.98 E-value=1.3 Score=33.53 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=42.7
Q ss_pred HHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEE
Q 006608 568 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 623 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v 623 (639)
.+||+..+.+|+...-+ ... .| -||-|.+..+|++|....+|+.+.+..|.+
T Consensus 14 v~d~K~~Lr~y~~~~I~-~d~--tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRLRKYRWDRIR-DDR--TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHHhcCCcceEE-ecC--CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 68999999999765433 322 23 599999999999999999999999998876
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.72 E-value=1.6 Score=45.25 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=58.3
Q ss_pred cccceeeccccccCHhHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 316 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g 316 (639)
...|+|-.+|..+|-.||..|+..+- .|.+|+|++|.. .++-.+.|.|.+..+|..+.+ +||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998776 689999999654 355568999999999999996 99988864
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.10 E-value=0.16 Score=50.49 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=64.2
Q ss_pred CceEEEcCCCCcCCHHHHH---HHhccCCCeEEEEeccCCC--C--CcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 352 ARRLYVGNLHFNMTEDQLR---QVFEPFGTVELVQLPLDET--G--HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~---~~f~~~G~i~~v~i~~~~~--~--~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
..-+||.+|+..+..+.+. +.|..||.|..|.+..+.. . ....-+||.|...++|..||...+|+.+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888888777555554 4688899999998887641 1 1123489999999999999999999999999999
Q ss_pred EEeeccCCc
Q 006608 425 VSAVTDQSG 433 (639)
Q Consensus 425 v~~~~~~~~ 433 (639)
+.+...+..
T Consensus 157 a~~gttkyc 165 (327)
T KOG2068|consen 157 ASLGTTKYC 165 (327)
T ss_pred HhhCCCcch
Confidence 998877665
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.04 E-value=1.6 Score=48.79 Aligned_cols=75 Identities=23% Similarity=0.257 Sum_probs=61.7
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCcee--cCeEEEEEeecc
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI--VGRAIKVSAVTD 430 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i--~g~~i~v~~~~~ 430 (639)
.+..+.|.+..++-.-|..+|.+||.|..++...+ -..|.|+|.+.+.|..|+.+|+|..+ .|-+.+|.++..
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34555566667777889999999999999998877 33799999999999999999999865 478899998875
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 44
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.73 E-value=5.9 Score=38.97 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=99.3
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCC-------CCCcccEEEEEEcccccHHHHH----H-hc--CC
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN-------SRRSKGVGYVEFYDVMSVPMAI----A-LS--GQ 312 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~-------~~~~~g~afV~f~~~~~a~~al----~-~~--~~ 312 (639)
..+.|.+.|+...++--.+...|..||+|+.|.++.+.. .........+-|-+.+.|...- + +. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 446799999999998888889999999999999998661 1123456889999888876543 2 22 23
Q ss_pred ccCCceeeeccchh--------hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHH-H---HhccCC---
Q 006608 313 PLLGQPVMVKPSEA--------EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR-Q---VFEPFG--- 377 (639)
Q Consensus 313 ~~~g~~l~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~-~---~f~~~G--- 377 (639)
.+....|.+.+..- +....+..... ...-...-.....++.|+|. +...+..+++. + ++..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~-~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYL-VASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHH-hhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCce
Confidence 45555565544321 00001110000 00001111223456777774 44455444333 2 222223
Q ss_pred -CeEEEEeccC-C--CCCcceEEEEEecCHHHHHHHHHHcC
Q 006608 378 -TVELVQLPLD-E--TGHCKGFGFVQFARLEDARNALNLNG 414 (639)
Q Consensus 378 -~i~~v~i~~~-~--~~~~~g~afVef~~~~~A~~A~~~l~ 414 (639)
.|+.|.|+.. . ...++.||.+.|-++..|...+..+.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 4577877765 2 33457899999999999999987554
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.71 E-value=1.6 Score=33.00 Aligned_cols=55 Identities=11% Similarity=0.226 Sum_probs=44.8
Q ss_pred cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 363 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 363 ~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
.++.++|+..+.+|+-. .|..+.+| -||.|.+..+|.+++...+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999743 34445555 499999999999999999999888877654
No 215
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.10 E-value=1.9 Score=33.99 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=39.0
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 308 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~ 308 (639)
-||-=..|......||.++|+.||.|.--+|- -.-|||.....+.|..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi~--------dTSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIN--------DTSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEEC--------TTEEEEEECCCHHHHHHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEEc--------CCcEEEEeecHHHHHHHHH
Confidence 35544599999999999999999998866662 3379999999999999986
No 216
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.86 E-value=0.31 Score=48.56 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=59.2
Q ss_pred ccccceeeccccccCHhHHH---HHHhhcCCeeEEEEeecCC--CCC-cccEEEEEEcccccHHHHHH-hcCCccCCcee
Q 006608 247 DQRTVFAYQICLKADERDVY---EFFSRAGKVRDVRLIMDRN--SRR-SKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 319 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~---~~f~~~G~i~~~~i~~d~~--~~~-~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l 319 (639)
..+-+||-+|+..+-.+.+. +.|.+||.|..|.+..+.. .+. .---+||+|...++|..||. .+|+.+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 44678999999886555443 4688999999999888762 111 11238999999999999997 99999999997
Q ss_pred eeccc
Q 006608 320 MVKPS 324 (639)
Q Consensus 320 ~v~~~ 324 (639)
+..+.
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 77543
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.53 E-value=2.8 Score=32.52 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=36.6
Q ss_pred CcCCHHHHHHHhccCC-----CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 362 FNMTEDQLRQVFEPFG-----TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 362 ~~~~e~~l~~~f~~~G-----~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..++..+|..++...+ .|-.|.|... |+||+-... .|..++..|++..+.|+.|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578888888888764 4567777755 899998775 678899999999999999999864
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.78 E-value=6 Score=42.48 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhc----CcEEEEEEecC--------------C-----------
Q 006608 540 IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF----GKLKHIFVEKD--------------S----------- 590 (639)
Q Consensus 540 ~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~----G~V~~v~v~~~--------------~----------- 590 (639)
.+..|+.|-|.|| .+.... ..||+-+|..| |.|.+|.|... +
T Consensus 170 ~~~~T~RLAVvNM--DWd~v~-------AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~ 240 (650)
T KOG2318|consen 170 LGEETKRLAVVNM--DWDRVK-------AKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEY 240 (650)
T ss_pred cccccceeeEecc--cccccc-------HHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccC
Confidence 4678899999999 544332 57777777765 68999988321 0
Q ss_pred ---------------------------CccEEEEecchHHHHHHHHHhcCcccC--CeEEEEEEcCchh
Q 006608 591 ---------------------------AGFVYLRFENTQSAFAAQRALHGRWFA--GKMITATFMVPQT 630 (639)
Q Consensus 591 ---------------------------~g~afV~F~s~e~A~~A~~~lng~~~~--g~~i~v~~~~~~~ 630 (639)
-=||.|+|.+++.|.......+|..|. +..|-+.|+|...
T Consensus 241 ~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 241 KESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred cccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 127899999999999999999999997 5566677776543
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.04 E-value=3.2 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCc-----EEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEc
Q 006608 568 KEDVEGECSKFGK-----LKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 626 (639)
Q Consensus 568 ~~dl~~~f~~~G~-----V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~ 626 (639)
..+|..++...+. |-.|.|.. .++||+-.. +.|..++..|++..++|+.|.|+.|
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4667777766654 45677743 478888654 5788899999999999999999875
No 220
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=76.42 E-value=6.5 Score=31.70 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCchhhHhhHHHHHHHHhhhcCcEEE-----EEE-ec--CCCccEEEEecchHHHHHHH
Q 006608 558 ETYEEFDMDIKEDVEGECSKFGKLKH-----IFV-EK--DSAGFVYLRFENTQSAFAAQ 608 (639)
Q Consensus 558 ~~~~~~~~~~~~dl~~~f~~~G~V~~-----v~v-~~--~~~g~afV~F~s~e~A~~A~ 608 (639)
.+|+++|++...-+...|++||.=-- +.. .. ++...+.|+|.+.+.|..+.
T Consensus 12 v~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 12 VRDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred ecCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 45789999999999999999985211 221 11 23456899999999987664
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=72.85 E-value=3.6 Score=36.99 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=79.0
Q ss_pred cceeecccc--ccCHhHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 250 TVFAYQICL--KADERDVYEFFSR-AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 250 ~l~v~nLp~--~~te~~l~~~f~~-~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
...||.+.. .++-..|...+.. ++....+.+.. ...++..+.|.+.+++..++......+.|..|.++.-.+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEecccccccccchhhhhhcc
Confidence 355555532 3566677776664 34433444432 245799999999999999999888888888888865543
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCc-CCHHHHHHHhccCCCeEEEEeccC
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLD 387 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~i~~v~i~~~ 387 (639)
......... ....-=|.|.|||.. .+++-|..+.+.+|.+..+.....
T Consensus 92 ~~~~~~~~~-------------~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVKF-------------EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccce-------------eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 221111100 011223667899977 588899999999999998877654
No 222
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=68.72 E-value=3.2 Score=46.22 Aligned_cols=6 Identities=17% Similarity=-0.008 Sum_probs=3.0
Q ss_pred EEeccc
Q 006608 547 LLLKNM 552 (639)
Q Consensus 547 l~V~Nl 552 (639)
++..||
T Consensus 904 ~~d~nl 909 (1194)
T KOG4246|consen 904 ASDDNL 909 (1194)
T ss_pred cccccc
Confidence 445555
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.59 E-value=5.4 Score=36.31 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=54.5
Q ss_pred ceEEEcCCCCcCC-----HHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe-EEEEE
Q 006608 353 RRLYVGNLHFNMT-----EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-AIKVS 426 (639)
Q Consensus 353 ~~l~v~nlp~~~~-----e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~-~i~v~ 426 (639)
..+.+.+++..+. ......+|..|.+....++++. .+...|.|.+++.|..|..++++..|.|. .++..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 4466666765442 2344566777766666666643 56788999999999999999999999998 77777
Q ss_pred eeccCC
Q 006608 427 AVTDQS 432 (639)
Q Consensus 427 ~~~~~~ 432 (639)
++....
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 776554
No 224
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.87 E-value=7.5 Score=35.39 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=46.5
Q ss_pred HHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCe-EEEEEEcCch
Q 006608 568 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK-MITATFMVPQ 629 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~-~i~v~~~~~~ 629 (639)
......+|..|..+.-+.+.+ +.+.+-|-|.+++.|..|...+++..|.|+ .+++-|+.+-
T Consensus 29 k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 29 KALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 355566666666665555533 567889999999999999999999999999 7777666543
No 225
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=62.67 E-value=28 Score=35.72 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=31.4
Q ss_pred eEEEEEecCHHHHHHHHHHcCCceec--CeEEEEEeeccCC
Q 006608 394 GFGFVQFARLEDARNALNLNGQLEIV--GRAIKVSAVTDQS 432 (639)
Q Consensus 394 g~afVef~~~~~A~~A~~~l~g~~i~--g~~i~v~~~~~~~ 432 (639)
.||.|+|.+...+......+.|..+. +..+-+.|+.+..
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~ 299 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSL 299 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCc
Confidence 47899999999999999999998876 4567777766544
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.71 E-value=22 Score=26.39 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=19.0
Q ss_pred hHHHHHHHHhhhcCcEEEEEE
Q 006608 566 DIKEDVEGECSKFGKLKHIFV 586 (639)
Q Consensus 566 ~~~~dl~~~f~~~G~V~~v~v 586 (639)
.|..+|+++|+..|.|.-+.+
T Consensus 6 ~i~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 6 EITAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHHHhcCcEEEEEE
Confidence 468999999999999998888
No 227
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.85 E-value=11 Score=38.88 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=3.9
Q ss_pred cCHhHHHHH
Q 006608 260 ADERDVYEF 268 (639)
Q Consensus 260 ~te~~l~~~ 268 (639)
++++++..-
T Consensus 361 LSe~E~~ar 369 (450)
T KOG3869|consen 361 LSEAERAAR 369 (450)
T ss_pred ccHHHHHHH
Confidence 344444333
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=56.69 E-value=26 Score=34.18 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=36.6
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCe-EEEEeccCCCCCcceEEEEEecCH
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARL 403 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i-~~v~i~~~~~~~~~g~afVef~~~ 403 (639)
..-|+|+||+.++-..+|+..+.+.|.+ ..|.+. | +.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCc
Confidence 4569999999999999999999988755 444442 2 256899999764
No 229
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=54.83 E-value=86 Score=23.27 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcC-cEEEEEEecC-CCccEEEEecchHHHHHHHHHhcCc
Q 006608 568 KEDVEGECSKFG-KLKHIFVEKD-SAGFVYLRFENTQSAFAAQRALHGR 614 (639)
Q Consensus 568 ~~dl~~~f~~~G-~V~~v~v~~~-~~g~afV~F~s~e~A~~A~~~lng~ 614 (639)
..+|.++|.+.| +|.++.+... .++..-|.+.+.+.|.++++. +|.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCC
Confidence 688889998887 4888876322 245555666666677777664 444
No 230
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.34 E-value=21 Score=36.64 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=46.1
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCe-EEEEeccCCCCCcceEEEEEecCHHHHHHHHHH
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALNL 412 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i-~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~ 412 (639)
-..+|-|.++|.....+||..+|+.|+.- -.|.|+.+ ..||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 45789999999999999999999999754 45555543 2699999999999999875
No 231
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.57 E-value=3.9 Score=43.53 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=56.5
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i 423 (639)
...+.|+|.|+++.++..+|..+|..+-.+..+.+-.. .......+.+|.|.--.....|+.+||++.+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 34678999999999999999999999877777766554 233345679999987777777888888876654443
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=41.77 E-value=33 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=32.6
Q ss_pred ccceeeccccc---------cCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEccc-ccHHHHHHhc
Q 006608 249 RTVFAYQICLK---------ADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDV-MSVPMAIALS 310 (639)
Q Consensus 249 ~~l~v~nLp~~---------~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~-~~a~~al~~~ 310 (639)
-+++|-|++.. ++.+.|.+.|..|.++. +..+.+.. .+.|++.|.|..- ..-..|+.|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHHH
Confidence 35777787654 35678999999998875 55556554 4889999999754 3445565443
No 233
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=39.79 E-value=1.1e+02 Score=31.61 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=30.7
Q ss_pred cEEEEecchHHHHHHHHHhcCcccCC--eEEEEEEcCch
Q 006608 593 FVYLRFENTQSAFAAQRALHGRWFAG--KMITATFMVPQ 629 (639)
Q Consensus 593 ~afV~F~s~e~A~~A~~~lng~~~~g--~~i~v~~~~~~ 629 (639)
+|.|+|.+++.+.....+.+|..|.. ..+-+.|++..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 68999999999999999999999874 46667776643
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.76 E-value=40 Score=34.74 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=49.3
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCC-eEEEEeccCCCC---CcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLPLDETG---HCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~-i~~v~i~~~~~~---~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
-..|.|.+||+.+++++|.+...++-. +....+.....+ .-.+.+||.|.++++........+|++|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 467899999999999999998888653 233333322111 12467999999999988887888887664
No 235
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.43 E-value=40 Score=26.81 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=31.2
Q ss_pred cEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 580 KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 580 ~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
.|.++..+...+|+.|||=.+..+...|+..+-+..... ...++.+++
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~----~~~vp~~E~ 80 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRGSR----PGLVPIEEM 80 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC----CEEB-GGGT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceeecc----ceeECHHHH
Confidence 577888888899999999999999999888766644322 344554444
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=39.36 E-value=28 Score=29.76 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=27.2
Q ss_pred eEEecccCCCCCCCchh-hHhhHHHHHHHHhhhcCcEEEEEE--ecCCCccEEEEecchHHH
Q 006608 546 CLLLKNMFDPKNETYEE-FDMDIKEDVEGECSKFGKLKHIFV--EKDSAGFVYLRFENTQSA 604 (639)
Q Consensus 546 ~l~V~Nl~~p~~~~~~~-~~~~~~~dl~~~f~~~G~V~~v~v--~~~~~g~afV~F~s~e~A 604 (639)
+++|-|+ +.+..++. +...-.+.|.+.|..|..+....+ .....|+++|+|..--..
T Consensus 10 mgIi~N~--~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNI--PTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE------EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcC--ccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 7788888 44332221 122224788888888987654333 333468999999985433
No 237
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=39.07 E-value=59 Score=29.27 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCc-EEEEEEecCCCccEEEEecchHHHHHHHHHhcCcc
Q 006608 568 KEDVEGECSKFGK-LKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW 615 (639)
Q Consensus 568 ~~dl~~~f~~~G~-V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~ 615 (639)
...|...+...|. |..|.++..-+||.||+....+++..++..+.|..
T Consensus 22 ~~~L~~~~~~~~~~i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 22 ALMLAMRAKKENLPIYAILAPPELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred HHHHHHHHHhCCCcEEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 4555555543332 77888888889999999998888888888776643
No 238
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=36.28 E-value=66 Score=26.73 Aligned_cols=56 Identities=13% Similarity=0.155 Sum_probs=41.3
Q ss_pred CCCchhhHhhHHHHHHHHhhhcCcEEEEEEe----cCC----------------CccEEEEecchHHHHHHHHHhc
Q 006608 557 NETYEEFDMDIKEDVEGECSKFGKLKHIFVE----KDS----------------AGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 557 ~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~----~~~----------------~g~afV~F~s~e~A~~A~~~ln 612 (639)
...+.+.|..+-+..-.+|..||.+..+..- ..+ .=+.+|.|-+.+...+|.+++-
T Consensus 11 P~~nk~aY~~~A~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m 86 (103)
T PF07237_consen 11 PTANKDAYRAMAEKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMM 86 (103)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhh
Confidence 3446789999999999999999998776541 111 1377999999999988887754
No 239
>PF14268 YoaP: YoaP-like
Probab=34.47 E-value=24 Score=24.21 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=32.2
Q ss_pred EEEEecchHHHHHHHHHhcCcc--cCCeEEEEEEcCchhhc
Q 006608 594 VYLRFENTQSAFAAQRALHGRW--FAGKMITATFMVPQTYE 632 (639)
Q Consensus 594 afV~F~s~e~A~~A~~~lng~~--~~g~~i~v~~~~~~~~~ 632 (639)
-+|..++.|+|+.|=.-++... ++|+-|+++..+++.|.
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils~~kf~ 43 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILSEKKFE 43 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeeccChhhhc
Confidence 4788999999998887777654 78999999998887764
No 240
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.93 E-value=38 Score=30.91 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=45.1
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS-RRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~-~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
.+++|.. +.+..-++|.++.+ |.+..|.+-.-.+. ...+|-.||+|.+.++|.++++.+.....-..|...
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKRS 182 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHHH
Confidence 3566666 32333334444444 77877776543221 257899999999999999999766666555555543
No 241
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=33.83 E-value=25 Score=33.56 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=8.3
Q ss_pred cceEEEEEecCHH
Q 006608 392 CKGFGFVQFARLE 404 (639)
Q Consensus 392 ~~g~afVef~~~~ 404 (639)
++..|.|+|-..+
T Consensus 215 SKQHaviQyR~v~ 227 (293)
T KOG1882|consen 215 SKQHAVIQYRLVE 227 (293)
T ss_pred cccceeeeeeecc
Confidence 4556777776654
No 242
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.85 E-value=61 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.5
Q ss_pred ccEEEEecchHHHHHHHHHhcCccc
Q 006608 592 GFVYLRFENTQSAFAAQRALHGRWF 616 (639)
Q Consensus 592 g~afV~F~s~e~A~~A~~~lng~~~ 616 (639)
...+|.|.|..+|.+|-..|...-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999999887655
No 243
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=29.79 E-value=1.1e+02 Score=23.24 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=42.2
Q ss_pred hHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 263 RDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 263 ~~l~~~f~~~G-~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
.+|.+.|...| ++..|.-+....++.....=||+.....+... -++=..|+|+.|.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecC
Confidence 46888899999 78888888887766666667777766544333 24445677888888654
No 244
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.42 E-value=46 Score=31.83 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=28.6
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEE
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV 586 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v 586 (639)
.....+||+-|+ |...+ ++.|..+.+..|.|..+.+
T Consensus 37 ~~eKd~lfl~Nv--p~~~t--------ee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNV--PLLST--------EEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecc--ccccc--------HHHHHHHHHHhhhhhheec
Confidence 346679999999 65555 8899999999998877665
No 245
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=28.18 E-value=21 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCcEEEE-EEecCCCccEEEEecchHHHHHHHHHhc
Q 006608 569 EDVEGECSKFGKLKHI-FVEKDSAGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 569 ~dl~~~f~~~G~V~~v-~v~~~~~g~afV~F~s~e~A~~A~~~ln 612 (639)
++|.+.|..++.+..+ ++ .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 5777777776665543 33 48999999999998887764
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.00 E-value=1.6e+02 Score=29.01 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=37.8
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccH
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSV 303 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a 303 (639)
..-|+|+|||.++.-.||+..+.+.|-+- ..|.. ..+.|-||+.|.+...+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCccCC
Confidence 35699999999999999999999877432 22222 23678899999876544
No 247
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=27.55 E-value=77 Score=24.14 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHHHHhccCC-CeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 367 DQLRQVFEPFG-TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 367 ~~l~~~f~~~G-~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+|.+.|..+| .+..|.-+.. .+..+...-||+.....+... .|+=..|+|+.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888899988 5667766655 345566788888876644333 233346788889888654
No 248
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.35 E-value=55 Score=31.84 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=35.2
Q ss_pred cccccceeeccccc------------cCHhHHHHHHhhcCCeeEEEEee-cC----CCCCcccEEEEEE
Q 006608 246 RDQRTVFAYQICLK------------ADERDVYEFFSRAGKVRDVRLIM-DR----NSRRSKGVGYVEF 297 (639)
Q Consensus 246 ~~~~~l~v~nLp~~------------~te~~l~~~f~~~G~i~~~~i~~-d~----~~~~~~g~afV~f 297 (639)
.-+-||++.+||-. -+++-|...|..||.|..|.|+. |+ .+|...|..|-.|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeecc
Confidence 34568999998853 34677999999999999988754 33 3455444444333
No 249
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.88 E-value=82 Score=28.84 Aligned_cols=56 Identities=23% Similarity=0.133 Sum_probs=40.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCC--CcceEEEEEecCHHHHHHHHHH
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETG--HCKGFGFVQFARLEDARNALNL 412 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~--~~~g~afVef~~~~~A~~A~~~ 412 (639)
+++|.. +.....++|.++.. |.+..|.+-....+ ..+|-.||.|.+.++|.+++..
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455554 44455566666666 78888888766433 5689999999999999887753
No 250
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.77 E-value=94 Score=32.12 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=45.2
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCC-eeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcC
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGK-VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSG 311 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~ 311 (639)
-.+.|-|.++|.....+||...|..|+. -.+|.-+-| -.||..|.+..-|..||.+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhccC
Confidence 5578999999999888899999999863 333433322 279999999999999998743
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.40 E-value=20 Score=38.52 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=50.1
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHH-HhcCCccC
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLL 315 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al-~~~~~~~~ 315 (639)
..+.|++.|++++++-++|..++..+--+..+.+..+..-....-+++|+|...-....|+ +|++..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4578999999999999999999998876666666544333345567899998666665555 36665553
No 252
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=25.43 E-value=1.2e+02 Score=23.11 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=41.4
Q ss_pred HHHHHHhccCC-CeEEEEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 367 DQLRQVFEPFG-TVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 367 ~~l~~~f~~~G-~i~~v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
++|.+.|...| .|..|.-+... +.......||++....+...++ +=..|++..|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCC
Confidence 57888888888 66777666553 6666778999998776544443 2245778888888754
No 253
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.38 E-value=36 Score=32.47 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.3
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEec
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP 385 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~ 385 (639)
..+||+.|+|..++++.|..+...+|.+..+.+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 5789999999999999999999999977665543
No 254
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=24.97 E-value=2.9e+02 Score=20.49 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=31.7
Q ss_pred hhhHhhHHHHHHHHhhhcCcEEEE-----E-Eec--CCCccEEEEecchHHHHHHH
Q 006608 561 EEFDMDIKEDVEGECSKFGKLKHI-----F-VEK--DSAGFVYLRFENTQSAFAAQ 608 (639)
Q Consensus 561 ~~~~~~~~~dl~~~f~~~G~V~~v-----~-v~~--~~~g~afV~F~s~e~A~~A~ 608 (639)
+++|.+...-+..++.+||.-.-+ . +.. .....+.|+|-+.+.|....
T Consensus 1 p~~~~~Y~~~~~~~l~~~GG~~l~~~~~~~~leG~~~~~~~viieFPs~~aa~~~~ 56 (65)
T PF07045_consen 1 PEAYQEYREAVPPILEKYGGRVLARGGEPEVLEGDWDPDRVVIIEFPSMEAAKAWY 56 (65)
T ss_dssp -HHHHHHHHHHHHHHHHTT-EEEEECEEEEEEEST-SSSEEEEEEESSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEECCceeEEecCCCCCeEEEEECCCHHHHHHHH
Confidence 356667788889999999853221 1 122 23467899999999887654
No 255
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=24.89 E-value=1.7e+02 Score=22.27 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=43.2
Q ss_pred hHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 263 RDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 263 ~~l~~~f~~~G-~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
++|.+.|...| .|..|.-+..+.++...-.-||++....+...+ ++=..|++..|.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecC
Confidence 57888888888 788888888776666777888888776653333 3444667778888654
No 256
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=22.97 E-value=55 Score=31.83 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=35.6
Q ss_pred HHHHHHHhhhcCcEEEEEEec--------CC-------Cc---------cEEEEecchHHHHHHHHHhcCccc
Q 006608 568 KEDVEGECSKFGKLKHIFVEK--------DS-------AG---------FVYLRFENTQSAFAAQRALHGRWF 616 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~--------~~-------~g---------~afV~F~s~e~A~~A~~~lng~~~ 616 (639)
+.-|...|..||.|..|.|+. ++ .| -|||+|.....-..|+.+|.|..+
T Consensus 175 e~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 175 EDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 578999999999999988732 11 12 246777777777778888887763
No 257
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.63 E-value=1.9e+02 Score=22.92 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=24.0
Q ss_pred CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCc
Q 006608 378 TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL 416 (639)
Q Consensus 378 ~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~ 416 (639)
.|.++..+.+ .+||.|||-.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4555555433 5789999999999999999877654
No 258
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.80 E-value=3.3e+02 Score=20.98 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCcEEEEEEecCC-CccEEEEecchHHHHHHHHHhc
Q 006608 568 KEDVEGECSKFGKLKHIFVEKDS-AGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 568 ~~dl~~~f~~~G~V~~v~v~~~~-~g~afV~F~s~e~A~~A~~~ln 612 (639)
..+|.+.+..+| +....+...+ =+++|+-|.+.+.|.++++.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 477888888999 6666665543 3566888879999999988774
No 259
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=20.26 E-value=1.5e+02 Score=22.19 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=25.3
Q ss_pred HHHHHHHhhh--cCcEEEEEEecCCCccE-EEEecch
Q 006608 568 KEDVEGECSK--FGKLKHIFVEKDSAGFV-YLRFENT 601 (639)
Q Consensus 568 ~~dl~~~f~~--~G~V~~v~v~~~~~g~a-fV~F~s~ 601 (639)
..+|.+.+.+ .|.|+..++. ++.|.+ +|+|.+-
T Consensus 17 ~~~l~~~l~~~~~g~I~~fKmt-DG~giG~vv~~~ng 52 (64)
T PF11061_consen 17 PKELVDKLGKNPIGTIKGFKMT-DGSGIGVVVEFSNG 52 (64)
T ss_pred cHHHHHHhccCCcEEEEEEEEe-cCCcEEEEEEecCC
Confidence 4778888888 9999999984 456755 7888763
Done!