Query 006608
Match_columns 639
No_of_seqs 400 out of 3194
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-40 1.1E-44 335.6 25.7 247 244-629 37-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.1E-39 3.8E-44 330.4 26.6 239 247-631 21-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 9.2E-31 3.2E-35 252.6 17.8 171 244-432 11-182 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 4.5E-30 1.5E-34 244.7 19.2 177 244-434 9-186 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 2.3E-29 8E-34 232.8 18.2 163 249-429 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 3.9E-29 1.3E-33 231.9 17.7 163 247-428 2-168 (168)
7 2cjk_A Nuclear polyadenylated 100.0 1.8E-29 6E-34 234.0 14.9 164 247-431 2-166 (167)
8 2qfj_A FBP-interacting repress 100.0 2.2E-29 7.5E-34 243.8 16.0 180 246-433 26-207 (216)
9 1fxl_A Paraneoplastic encephal 100.0 6E-29 2E-33 230.3 17.8 162 248-428 2-167 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 1E-28 3.5E-33 230.7 17.6 165 247-429 2-175 (175)
11 4f02_A Polyadenylate-binding p 100.0 2.4E-28 8.2E-33 235.7 18.9 166 350-630 13-182 (213)
12 3pgw_A U1-A; protein-RNA compl 100.0 4.4E-27 1.5E-31 237.5 29.0 263 349-627 6-281 (282)
13 3md3_A Nuclear and cytoplasmic 100.0 1.9E-27 6.4E-32 220.0 19.9 161 353-628 1-166 (166)
14 1fje_B Nucleolin RBD12, protei 100.0 1.4E-28 4.7E-33 229.9 10.8 166 244-431 9-174 (175)
15 2yh0_A Splicing factor U2AF 65 100.0 1.8E-27 6.1E-32 227.1 18.4 180 247-432 3-195 (198)
16 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-27 1.5E-31 218.1 19.4 159 351-626 2-168 (168)
17 2g4b_A Splicing factor U2AF 65 100.0 1.3E-27 4.4E-32 222.6 16.0 157 247-428 3-171 (172)
18 1fxl_A Paraneoplastic encephal 99.9 7.6E-27 2.6E-31 216.1 20.1 158 352-626 2-167 (167)
19 2qfj_A FBP-interacting repress 99.9 1.1E-26 3.8E-31 224.7 20.6 179 352-636 28-212 (216)
20 3smz_A Protein raver-1, ribonu 99.9 6.7E-27 2.3E-31 236.4 19.3 170 247-432 94-265 (284)
21 1l3k_A Heterogeneous nuclear r 99.9 1.7E-26 5.7E-31 219.9 19.6 170 350-632 11-186 (196)
22 3tyt_A Heterogeneous nuclear r 99.9 5.8E-27 2E-31 223.5 16.2 176 247-428 3-204 (205)
23 2adc_A Polypyrimidine tract-bi 99.9 4.7E-26 1.6E-30 222.2 21.5 194 350-629 32-228 (229)
24 2adc_A Polypyrimidine tract-bi 99.9 1.7E-26 6E-31 225.2 17.5 179 244-431 30-228 (229)
25 3pgw_A U1-A; protein-RNA compl 99.9 5E-26 1.7E-30 229.7 20.3 178 245-429 6-281 (282)
26 2ghp_A U4/U6 snRNA-associated 99.9 1.7E-26 5.9E-31 234.3 16.8 171 247-431 116-291 (292)
27 1qm9_A Polypyrimidine tract-bi 99.9 6.7E-26 2.3E-30 216.1 18.7 192 352-629 3-197 (198)
28 3nmr_A Cugbp ELAV-like family 99.9 6.9E-26 2.4E-30 211.4 17.6 160 352-627 3-175 (175)
29 1qm9_A Polypyrimidine tract-bi 99.9 3.1E-26 1.1E-30 218.5 15.1 175 248-431 3-197 (198)
30 1fje_B Nucleolin RBD12, protei 99.9 2.2E-26 7.7E-31 214.9 12.7 165 349-629 10-174 (175)
31 2cjk_A Nuclear polyadenylated 99.9 2.9E-26 9.8E-31 212.4 13.1 158 352-629 3-166 (167)
32 3sde_A Paraspeckle component 1 99.9 9.3E-26 3.2E-30 224.6 17.5 157 245-432 19-180 (261)
33 3tyt_A Heterogeneous nuclear r 99.9 5.1E-25 1.7E-29 210.0 20.7 192 351-626 3-204 (205)
34 2yh0_A Splicing factor U2AF 65 99.9 5.9E-25 2E-29 209.6 20.4 177 351-630 3-195 (198)
35 2g4b_A Splicing factor U2AF 65 99.9 3.4E-25 1.2E-29 206.1 18.3 154 351-627 3-172 (172)
36 3sde_A Paraspeckle component 1 99.9 6.6E-24 2.3E-28 211.2 18.5 153 350-630 20-180 (261)
37 3s6e_A RNA-binding protein 39; 99.8 3.4E-21 1.1E-25 163.7 9.9 97 542-638 5-102 (114)
38 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-19 5.3E-24 165.2 15.2 149 277-433 2-152 (158)
39 3v4m_A Splicing factor U2AF 65 99.8 8.2E-20 2.8E-24 153.5 10.8 94 541-634 2-102 (105)
40 4f25_A Polyadenylate-binding p 99.8 4.7E-19 1.6E-23 152.4 7.1 108 248-368 5-113 (115)
41 2i2y_A Fusion protein consists 99.8 2.5E-18 8.6E-23 155.5 11.0 137 391-629 11-148 (150)
42 2i2y_A Fusion protein consists 99.7 4.5E-18 1.5E-22 153.9 10.3 137 287-431 10-148 (150)
43 2kn4_A Immunoglobulin G-bindin 99.7 2.5E-17 8.4E-22 150.5 13.1 78 543-630 69-151 (158)
44 4fxv_A ELAV-like protein 1; RN 99.7 7.2E-18 2.4E-22 140.4 8.2 80 247-326 18-98 (99)
45 3pgw_S U1-70K; protein-RNA com 99.7 1.9E-17 6.6E-22 175.2 9.2 167 264-432 8-183 (437)
46 3ue2_A Poly(U)-binding-splicin 99.7 3.1E-17 1E-21 140.3 8.5 87 543-634 19-114 (118)
47 4fxv_A ELAV-like protein 1; RN 99.7 9.2E-17 3.1E-21 133.7 10.9 79 352-430 19-98 (99)
48 2pe8_A Splicing factor 45; RRM 99.7 7.4E-17 2.5E-21 135.3 10.0 89 541-634 5-99 (105)
49 3s8s_A Histone-lysine N-methyl 99.7 6.8E-17 2.3E-21 137.1 8.5 83 246-328 4-87 (110)
50 2lxi_A RNA-binding protein 10; 99.7 1.4E-17 4.7E-22 136.5 3.6 80 248-327 1-83 (91)
51 2dgs_A DAZ-associated protein 99.7 2E-16 6.7E-21 132.1 9.1 84 245-328 7-90 (99)
52 3p5t_L Cleavage and polyadenyl 99.7 9.4E-17 3.2E-21 131.4 6.5 81 249-329 2-85 (90)
53 2lkz_A RNA-binding protein 5; 99.7 8.1E-17 2.8E-21 132.4 6.0 81 245-325 6-93 (95)
54 1s79_A Lupus LA protein; RRM, 99.6 2E-16 7E-21 132.4 8.2 82 245-327 8-89 (103)
55 3s7r_A Heterogeneous nuclear r 99.6 2.3E-16 7.8E-21 128.3 8.3 81 244-324 7-87 (87)
56 2wbr_A GW182, gawky, LD47780P; 99.6 4E-16 1.4E-20 123.0 9.2 82 543-635 6-87 (89)
57 2cq4_A RNA binding motif prote 99.6 3.5E-16 1.2E-20 134.3 9.8 88 244-331 21-108 (114)
58 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.2E-16 7.5E-21 128.4 8.0 81 246-326 4-85 (87)
59 2lxi_A RNA-binding protein 10; 99.6 1.9E-16 6.3E-21 129.7 7.3 82 352-433 1-85 (91)
60 3s8s_A Histone-lysine N-methyl 99.6 8.5E-16 2.9E-20 130.4 11.6 83 350-432 4-87 (110)
61 1whw_A Hypothetical protein ri 99.6 3.1E-16 1.1E-20 130.9 8.3 85 245-329 5-90 (99)
62 2dnm_A SRP46 splicing factor; 99.6 4E-16 1.4E-20 131.2 8.9 83 245-327 10-93 (103)
63 3ns6_A Eukaryotic translation 99.6 1.8E-16 6.1E-21 132.4 6.7 84 246-329 4-95 (100)
64 2lkz_A RNA-binding protein 5; 99.6 4.1E-16 1.4E-20 128.1 8.7 82 349-430 6-94 (95)
65 2dit_A HIV TAT specific factor 99.6 5.3E-16 1.8E-20 132.5 9.6 94 541-634 12-107 (112)
66 1p27_B RNA-binding protein 8A; 99.6 4.1E-16 1.4E-20 132.0 8.6 84 244-327 19-103 (106)
67 2e5h_A Zinc finger CCHC-type a 99.6 2E-15 6.8E-20 124.7 12.4 85 345-429 9-94 (94)
68 2dnz_A Probable RNA-binding pr 99.6 4.9E-16 1.7E-20 128.6 8.5 82 246-327 3-85 (95)
69 2do4_A Squamous cell carcinoma 99.6 2.5E-15 8.7E-20 125.6 12.9 85 348-432 13-97 (100)
70 2dgo_A Cytotoxic granule-assoc 99.6 5.6E-15 1.9E-19 126.9 15.3 88 347-434 10-98 (115)
71 3lqv_A PRE-mRNA branch site pr 99.6 4.1E-16 1.4E-20 134.1 8.1 104 245-378 5-109 (115)
72 2dgo_A Cytotoxic granule-assoc 99.6 1.1E-15 3.8E-20 131.3 10.8 86 245-330 12-98 (115)
73 2mss_A Protein (musashi1); RNA 99.6 2.7E-16 9.2E-21 123.9 6.3 75 250-324 1-75 (75)
74 2dh8_A DAZ-associated protein 99.6 7.8E-16 2.7E-20 130.0 9.6 84 245-328 13-96 (105)
75 2la6_A RNA-binding protein FUS 99.6 6.9E-16 2.4E-20 128.8 9.0 83 242-324 7-98 (99)
76 2x1f_A MRNA 3'-END-processing 99.6 5E-16 1.7E-20 128.8 8.0 83 247-329 1-84 (96)
77 3md1_A Nuclear and cytoplasmic 99.6 4.7E-16 1.6E-20 125.2 7.7 78 249-326 2-80 (83)
78 2lea_A Serine/arginine-rich sp 99.6 3.6E-16 1.2E-20 138.1 7.6 122 292-433 6-129 (135)
79 2cqc_A Arginine/serine-rich sp 99.6 8.2E-16 2.8E-20 127.3 9.2 81 245-325 12-93 (95)
80 2jrs_A RNA-binding protein 39; 99.6 6.8E-16 2.3E-20 130.8 8.8 84 243-326 21-105 (108)
81 1x5u_A Splicing factor 3B subu 99.6 6.2E-16 2.1E-20 130.6 8.5 84 245-328 12-96 (105)
82 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.6E-16 1.6E-20 125.9 7.4 79 246-324 5-84 (85)
83 1whw_A Hypothetical protein ri 99.6 3.6E-15 1.2E-19 124.4 12.8 85 350-434 6-91 (99)
84 3ucg_A Polyadenylate-binding p 99.6 5.3E-16 1.8E-20 126.7 7.6 80 247-326 5-84 (89)
85 2cqc_A Arginine/serine-rich sp 99.6 2.9E-15 9.8E-20 124.0 12.1 84 347-430 10-94 (95)
86 2cpz_A CUG triplet repeat RNA- 99.6 7.7E-16 2.6E-20 132.3 8.8 84 245-328 22-106 (115)
87 2cq0_A Eukaryotic translation 99.6 3.8E-15 1.3E-19 125.2 12.8 85 349-433 12-97 (103)
88 2dng_A Eukaryotic translation 99.6 6.8E-16 2.3E-20 129.8 8.2 83 244-327 11-93 (103)
89 2kxn_B Transformer-2 protein h 99.6 1.1E-15 3.7E-20 133.8 9.7 83 245-327 43-126 (129)
90 1oo0_B CG8781-PA, drosophila Y 99.6 6.2E-16 2.1E-20 131.8 7.9 85 243-327 21-106 (110)
91 2do0_A HnRNP M, heterogeneous 99.6 9.4E-15 3.2E-19 125.3 15.4 86 348-433 11-96 (114)
92 2do4_A Squamous cell carcinoma 99.6 9.7E-16 3.3E-20 128.1 8.9 83 244-327 13-96 (100)
93 1x4h_A RNA-binding protein 28; 99.6 9.9E-16 3.4E-20 130.8 9.1 83 245-327 12-101 (111)
94 1wi8_A EIF-4B, eukaryotic tran 99.6 6E-16 2.1E-20 130.4 7.5 84 244-328 11-95 (104)
95 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.5E-15 8.5E-20 122.1 10.8 82 350-431 4-86 (87)
96 2div_A TRNA selenocysteine ass 99.6 6.7E-16 2.3E-20 128.9 7.5 83 244-326 5-93 (99)
97 2dgs_A DAZ-associated protein 99.6 4.1E-15 1.4E-19 124.0 12.3 84 349-433 7-91 (99)
98 2cpf_A RNA binding motif prote 99.6 6.1E-16 2.1E-20 128.8 7.2 83 246-328 3-89 (98)
99 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 125.4 11.7 85 349-433 9-94 (102)
100 1x5s_A Cold-inducible RNA-bind 99.6 7.8E-16 2.7E-20 129.2 7.9 83 245-327 9-92 (102)
101 3r27_A HnRNP L, heterogeneous 99.6 2.2E-15 7.6E-20 123.6 10.3 78 541-629 18-97 (100)
102 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.1E-15 7.1E-20 122.0 10.1 80 350-429 5-85 (85)
103 3md1_A Nuclear and cytoplasmic 99.6 3.2E-15 1.1E-19 120.2 11.2 81 352-432 1-82 (83)
104 2cph_A RNA binding motif prote 99.6 1.2E-15 4.2E-20 129.3 9.1 85 244-328 11-98 (107)
105 2cqd_A RNA-binding region cont 99.6 9.9E-15 3.4E-19 125.6 14.9 87 346-433 11-98 (116)
106 2dnm_A SRP46 splicing factor; 99.6 2.5E-15 8.4E-20 126.4 10.7 87 347-433 8-95 (103)
107 2x1f_A MRNA 3'-END-processing 99.6 3.5E-15 1.2E-19 123.7 11.4 83 351-433 1-84 (96)
108 1p1t_A Cleavage stimulation fa 99.6 5E-16 1.7E-20 130.9 6.4 86 245-330 5-91 (104)
109 2e5h_A Zinc finger CCHC-type a 99.6 1.2E-15 4.1E-20 126.0 8.5 80 245-324 13-93 (94)
110 1x5u_A Splicing factor 3B subu 99.6 4.8E-15 1.6E-19 125.1 12.4 86 348-433 11-97 (105)
111 2dgp_A Bruno-like 4, RNA bindi 99.6 1E-15 3.5E-20 129.5 8.3 85 244-328 9-97 (106)
112 2d9p_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 124.9 12.0 85 349-434 12-96 (103)
113 2cq0_A Eukaryotic translation 99.6 7.5E-16 2.5E-20 129.6 7.3 83 245-327 12-95 (103)
114 2cqd_A RNA-binding region cont 99.6 2.4E-15 8.3E-20 129.4 10.5 83 244-327 13-96 (116)
115 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.8E-16 2E-20 130.0 6.4 84 245-328 9-93 (102)
116 1rk8_A CG8781-PA, CG8781-PA pr 99.6 2.6E-15 8.9E-20 137.8 11.3 139 295-433 11-154 (165)
117 2ywk_A Putative RNA-binding pr 99.6 2.5E-15 8.5E-20 124.4 10.1 82 348-429 12-93 (95)
118 1x5t_A Splicing factor 3B subu 99.6 5.4E-16 1.8E-20 128.7 6.1 81 247-327 4-86 (96)
119 2hvz_A Splicing factor, argini 99.6 7.8E-16 2.7E-20 129.0 7.1 100 249-362 1-101 (101)
120 4f25_A Polyadenylate-binding p 99.6 2.1E-15 7.2E-20 129.4 10.0 81 352-433 5-85 (115)
121 2dnh_A Bruno-like 5, RNA bindi 99.6 6.4E-15 2.2E-19 124.3 12.7 85 350-434 13-100 (105)
122 1x5s_A Cold-inducible RNA-bind 99.6 3.4E-15 1.1E-19 125.3 10.6 86 348-433 8-94 (102)
123 2dnz_A Probable RNA-binding pr 99.6 4.6E-15 1.6E-19 122.7 11.3 84 350-433 3-87 (95)
124 2dhg_A TRNA selenocysteine ass 99.6 2.4E-15 8.3E-20 126.7 9.7 82 246-328 7-91 (104)
125 2cq3_A RNA-binding protein 9; 99.6 1.2E-14 4.2E-19 122.1 14.0 86 347-433 10-95 (103)
126 2cq1_A PTB-like protein L; RRM 99.6 5.3E-15 1.8E-19 122.9 11.5 85 541-636 12-98 (101)
127 2dnh_A Bruno-like 5, RNA bindi 99.6 2.1E-15 7E-20 127.4 9.2 82 246-328 13-98 (105)
128 2ywk_A Putative RNA-binding pr 99.6 2E-15 6.9E-20 124.9 8.9 80 245-325 13-93 (95)
129 1iqt_A AUF1, heterogeneous nuc 99.6 6.4E-16 2.2E-20 121.8 5.5 75 250-324 1-75 (75)
130 3ex7_B RNA-binding protein 8A; 99.6 1.1E-15 3.9E-20 133.6 7.7 86 243-328 17-103 (126)
131 3ulh_A THO complex subunit 4; 99.6 5.2E-15 1.8E-19 125.4 11.5 82 348-429 25-106 (107)
132 2dnn_A RNA-binding protein 12; 99.6 1.6E-15 5.3E-20 128.1 8.1 82 245-328 13-94 (109)
133 2d9p_A Polyadenylate-binding p 99.6 2.1E-15 7E-20 126.9 8.8 82 245-328 12-94 (103)
134 1x4h_A RNA-binding protein 28; 99.6 1.1E-14 3.8E-19 124.2 13.4 85 349-433 12-103 (111)
135 2cpy_A RNA-binding protein 12; 99.6 1E-15 3.6E-20 131.1 6.9 85 245-330 12-97 (114)
136 3n9u_C Cleavage and polyadenyl 99.6 1.4E-15 4.8E-20 137.5 8.1 82 247-328 54-138 (156)
137 1sjq_A Polypyrimidine tract-bi 99.6 2.3E-15 7.8E-20 124.9 8.5 81 541-632 13-95 (105)
138 2cpz_A CUG triplet repeat RNA- 99.6 8.3E-15 2.8E-19 125.8 12.4 84 350-433 23-107 (115)
139 2cph_A RNA binding motif prote 99.6 9.3E-15 3.2E-19 123.8 12.5 86 348-433 11-99 (107)
140 2fy1_A RNA-binding motif prote 99.6 3E-15 1E-19 128.6 9.5 82 246-328 5-87 (116)
141 1wel_A RNA-binding protein 12; 99.6 8.9E-16 3.1E-20 133.8 6.2 84 245-328 22-105 (124)
142 1x4e_A RNA binding motif, sing 99.6 6.4E-16 2.2E-20 125.0 4.7 79 246-324 3-82 (85)
143 1x5t_A Splicing factor 3B subu 99.6 4.7E-15 1.6E-19 122.9 10.1 84 350-433 3-88 (96)
144 2rs2_A Musashi-1, RNA-binding 99.6 1.4E-15 4.7E-20 129.2 7.0 83 244-326 21-103 (109)
145 2cqg_A TDP-43, TAR DNA-binding 99.6 3.7E-15 1.3E-19 125.3 9.6 83 245-328 12-94 (103)
146 1wez_A HnRNP H', FTP-3, hetero 99.6 1.2E-15 4E-20 127.7 6.4 79 245-325 12-90 (102)
147 1wg5_A Heterogeneous nuclear r 99.6 2E-15 7E-20 127.0 7.8 80 246-326 13-93 (104)
148 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.7E-14 5.9E-19 121.2 13.5 85 348-433 11-95 (103)
149 2wbr_A GW182, gawky, LD47780P; 99.6 4.5E-15 1.5E-19 117.1 9.1 74 351-429 6-79 (89)
150 3r27_A HnRNP L, heterogeneous 99.6 5.2E-15 1.8E-19 121.4 9.9 79 349-432 18-98 (100)
151 1p27_B RNA-binding protein 8A; 99.6 5.5E-15 1.9E-19 125.0 10.4 84 349-432 20-104 (106)
152 1x4b_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 130.2 7.5 83 245-327 24-106 (116)
153 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.6E-16 2.6E-20 128.7 5.0 82 244-326 15-97 (100)
154 1oo0_B CG8781-PA, drosophila Y 99.6 8.6E-15 2.9E-19 124.7 11.6 84 349-432 23-107 (110)
155 4a8x_A RNA-binding protein wit 99.6 1.1E-15 3.9E-20 124.5 5.8 80 247-326 3-84 (88)
156 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.7E-15 5.8E-20 120.0 6.6 75 249-324 1-76 (77)
157 2cpe_A RNA-binding protein EWS 99.6 2.1E-15 7.1E-20 129.2 7.7 84 245-328 12-104 (113)
158 2fy1_A RNA-binding motif prote 99.6 8.2E-15 2.8E-19 125.8 11.3 84 350-433 5-88 (116)
159 3ulh_A THO complex subunit 4; 99.6 2.8E-15 9.5E-20 127.0 8.2 79 245-324 26-105 (107)
160 1u6f_A Tcubp1, RNA-binding pro 99.6 4.4E-15 1.5E-19 132.3 9.9 84 245-328 39-123 (139)
161 2cpf_A RNA binding motif prote 99.6 6.9E-15 2.4E-19 122.4 10.5 84 350-433 3-90 (98)
162 2dng_A Eukaryotic translation 99.6 1.8E-14 6.2E-19 121.0 13.1 84 348-433 11-95 (103)
163 2ki2_A SS-DNA binding protein 99.6 1.1E-15 3.8E-20 125.0 5.4 79 249-328 2-81 (90)
164 2la6_A RNA-binding protein FUS 99.6 8.2E-15 2.8E-19 122.2 10.8 82 348-429 9-99 (99)
165 2m2b_A RNA-binding protein 10; 99.6 2E-15 6.8E-20 132.9 7.3 82 245-327 20-108 (131)
166 2jrs_A RNA-binding protein 39; 99.6 8.8E-15 3E-19 123.9 10.8 84 349-432 23-107 (108)
167 2cq3_A RNA-binding protein 9; 99.6 5.2E-15 1.8E-19 124.4 9.3 83 244-328 11-94 (103)
168 2do0_A HnRNP M, heterogeneous 99.6 8.4E-15 2.9E-19 125.6 10.7 82 244-326 11-93 (114)
169 2dgw_A Probable RNA-binding pr 99.6 1.7E-14 5.7E-19 118.2 12.0 82 349-432 7-88 (91)
170 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.2E-15 1.8E-19 124.4 9.1 83 244-328 11-94 (103)
171 2db1_A Heterogeneous nuclear r 99.6 2.3E-15 7.7E-20 129.8 6.9 84 245-329 14-100 (118)
172 2dgv_A HnRNP M, heterogeneous 99.6 3.9E-15 1.3E-19 122.3 8.1 81 244-326 4-85 (92)
173 3ns6_A Eukaryotic translation 99.6 2.4E-15 8.3E-20 125.5 6.9 81 351-431 5-93 (100)
174 1sjq_A Polypyrimidine tract-bi 99.6 5.8E-15 2E-19 122.4 9.0 79 350-433 14-94 (105)
175 1wi8_A EIF-4B, eukaryotic tran 99.6 2.2E-14 7.7E-19 120.7 12.9 83 349-433 12-96 (104)
176 2dis_A Unnamed protein product 99.6 4.5E-15 1.5E-19 126.2 8.6 85 245-329 5-94 (109)
177 1s79_A Lupus LA protein; RRM, 99.6 3.7E-15 1.3E-19 124.7 7.8 82 350-432 9-90 (103)
178 2dhg_A TRNA selenocysteine ass 99.6 8.4E-15 2.9E-19 123.3 10.1 85 350-434 7-93 (104)
179 3p5t_L Cleavage and polyadenyl 99.6 1.4E-15 5E-20 124.3 5.2 81 353-433 2-85 (90)
180 2dgx_A KIAA0430 protein; RRM d 99.6 1.6E-14 5.6E-19 119.5 11.6 81 350-432 7-91 (96)
181 2cpe_A RNA-binding protein EWS 99.6 1.8E-14 6E-19 123.4 12.2 86 348-433 11-105 (113)
182 1wex_A Hypothetical protein (r 99.6 1.6E-14 5.4E-19 120.8 11.5 81 348-433 11-93 (104)
183 2dgp_A Bruno-like 4, RNA bindi 99.6 1E-14 3.5E-19 123.3 10.6 86 348-433 9-98 (106)
184 1jmt_A Splicing factor U2AF 35 99.6 6.2E-15 2.1E-19 123.5 9.0 84 544-627 1-104 (104)
185 2jwn_A Embryonic polyadenylate 99.6 2.6E-15 8.8E-20 130.9 6.9 81 246-326 34-114 (124)
186 2lmi_A GRSF-1, G-rich sequence 99.6 1.9E-15 6.5E-20 127.9 5.8 84 245-329 8-94 (107)
187 2cqp_A RNA-binding protein 12; 99.6 6.7E-15 2.3E-19 122.5 9.0 84 349-432 12-96 (98)
188 2ek1_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 125.5 5.1 79 247-325 14-93 (95)
189 2div_A TRNA selenocysteine ass 99.6 7.1E-15 2.4E-19 122.6 9.1 83 350-432 7-95 (99)
190 2cq1_A PTB-like protein L; RRM 99.6 3.4E-14 1.2E-18 118.0 13.0 81 348-433 11-93 (101)
191 2khc_A Testis-specific RNP-typ 99.6 1.7E-14 5.9E-19 124.5 11.6 82 348-429 36-118 (118)
192 2cqp_A RNA-binding protein 12; 99.6 2E-15 6.8E-20 125.7 5.5 80 246-325 13-93 (98)
193 4a8x_A RNA-binding protein wit 99.6 1E-14 3.5E-19 118.7 9.6 82 351-432 3-86 (88)
194 2dgw_A Probable RNA-binding pr 99.6 3.9E-15 1.3E-19 122.1 7.1 80 245-326 7-86 (91)
195 2nlw_A Eukaryotic translation 99.6 5.1E-15 1.7E-19 124.8 8.0 80 244-325 11-98 (105)
196 1wg5_A Heterogeneous nuclear r 99.6 2E-14 6.9E-19 120.9 11.7 85 347-432 10-95 (104)
197 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.3E-15 1.5E-19 136.3 8.2 85 244-328 68-153 (165)
198 2kxn_B Transformer-2 protein h 99.6 7.5E-15 2.6E-19 128.4 9.3 85 348-432 42-127 (129)
199 2dh8_A DAZ-associated protein 99.6 1.1E-14 3.8E-19 122.8 10.0 87 346-433 10-97 (105)
200 2khc_A Testis-specific RNP-typ 99.6 3.4E-14 1.2E-18 122.6 13.3 76 541-626 37-117 (118)
201 2dgv_A HnRNP M, heterogeneous 99.6 1.2E-14 4.2E-19 119.3 10.0 82 350-432 6-87 (92)
202 1wex_A Hypothetical protein (r 99.6 1.1E-14 3.6E-19 121.9 9.7 81 541-632 12-94 (104)
203 1x4d_A Matrin 3; structural ge 99.6 9.3E-15 3.2E-19 121.3 9.1 78 542-630 13-93 (102)
204 2ad9_A Polypyrimidine tract-bi 99.6 8.8E-15 3E-19 124.6 9.2 82 541-633 28-111 (119)
205 2hgm_A HNRPF protein, heteroge 99.6 5.1E-15 1.8E-19 127.8 7.7 80 246-327 40-121 (126)
206 2dgx_A KIAA0430 protein; RRM d 99.6 4.6E-15 1.6E-19 122.9 7.1 78 246-326 7-89 (96)
207 2xs2_A Deleted in azoospermia- 99.6 5.3E-15 1.8E-19 124.1 7.5 82 244-327 5-86 (102)
208 1x4a_A Splicing factor, argini 99.6 4.6E-14 1.6E-18 119.9 13.4 84 348-433 18-101 (109)
209 3ex7_B RNA-binding protein 8A; 99.6 1.3E-14 4.3E-19 126.9 10.2 85 349-433 19-104 (126)
210 2kt5_A RNA and export factor-b 99.6 3.6E-14 1.2E-18 123.6 12.9 86 348-433 31-116 (124)
211 1x4d_A Matrin 3; structural ge 99.5 1.6E-14 5.4E-19 119.9 9.9 78 350-432 13-93 (102)
212 2hgl_A HNRPF protein, heteroge 99.5 2.9E-15 9.9E-20 131.6 5.7 83 246-329 42-127 (136)
213 2fc9_A NCL protein; structure 99.5 4.4E-14 1.5E-18 118.2 12.7 83 348-433 11-93 (101)
214 1h2v_Z 20 kDa nuclear CAP bind 99.5 6.9E-15 2.4E-19 133.8 8.4 84 245-328 36-120 (156)
215 2krb_A Eukaryotic translation 99.5 4.1E-15 1.4E-19 118.9 6.1 71 249-321 2-80 (81)
216 1x4f_A Matrin 3; structural ge 99.5 1.1E-14 3.8E-19 122.5 8.9 85 541-636 22-109 (112)
217 3s7r_A Heterogeneous nuclear r 99.5 2.6E-14 8.9E-19 116.0 10.8 78 350-428 9-87 (87)
218 2lea_A Serine/arginine-rich sp 99.5 3.7E-15 1.3E-19 131.6 6.1 84 244-327 43-127 (135)
219 1x4c_A Splicing factor, argini 99.5 4.6E-14 1.6E-18 119.6 12.6 80 348-433 11-95 (108)
220 2ad9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.3E-19 122.6 10.1 79 350-433 29-109 (119)
221 2ek1_A RNA-binding protein 12; 99.5 5.4E-15 1.9E-19 122.3 6.7 80 350-429 13-93 (95)
222 3ucg_A Polyadenylate-binding p 99.5 2E-14 6.7E-19 117.3 9.8 80 352-432 6-86 (89)
223 2cpy_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 123.5 9.8 83 349-432 12-95 (114)
224 2cqg_A TDP-43, TAR DNA-binding 99.5 6.7E-14 2.3E-18 117.5 13.3 86 347-434 10-96 (103)
225 2cpi_A CCR4-NOT transcription 99.5 6.3E-15 2.2E-19 125.6 7.0 83 246-328 13-102 (111)
226 2db1_A Heterogeneous nuclear r 99.5 1.8E-14 6.2E-19 124.1 9.8 81 349-430 14-97 (118)
227 2cpi_A CCR4-NOT transcription 99.5 2.6E-14 9E-19 121.7 10.6 84 349-432 12-102 (111)
228 1wez_A HnRNP H', FTP-3, hetero 99.5 1.7E-14 5.8E-19 120.6 9.2 83 348-432 11-93 (102)
229 1whx_A Hypothetical protein ri 99.5 1.5E-14 5.3E-19 123.0 9.1 81 543-634 9-89 (111)
230 1x5o_A RNA binding motif, sing 99.5 1.9E-14 6.4E-19 123.4 9.5 80 245-325 22-110 (114)
231 3n9u_C Cleavage and polyadenyl 99.5 2.3E-14 8E-19 129.5 10.5 82 351-432 54-138 (156)
232 2err_A Ataxin-2-binding protei 99.5 9.1E-15 3.1E-19 124.1 7.3 81 244-326 25-106 (109)
233 3q2s_C Cleavage and polyadenyl 99.5 1.1E-14 3.6E-19 140.8 8.7 82 247-328 67-151 (229)
234 2dgu_A Heterogeneous nuclear r 99.5 9E-14 3.1E-18 116.7 13.3 79 349-434 8-86 (103)
235 1why_A Hypothetical protein ri 99.5 2.7E-14 9.1E-19 118.6 9.9 77 542-629 15-93 (97)
236 2nlw_A Eukaryotic translation 99.5 2.5E-14 8.5E-19 120.5 9.8 82 350-432 13-101 (105)
237 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 5.5E-14 1.9E-18 125.3 12.6 82 347-428 58-140 (140)
238 2err_A Ataxin-2-binding protei 99.5 2.2E-14 7.7E-19 121.7 9.5 82 349-431 26-107 (109)
239 1h2v_Z 20 kDa nuclear CAP bind 99.5 5E-14 1.7E-18 128.0 12.2 84 350-433 37-121 (156)
240 1u6f_A Tcubp1, RNA-binding pro 99.5 5.3E-14 1.8E-18 125.2 12.0 86 348-433 38-124 (139)
241 2m2b_A RNA-binding protein 10; 99.5 1.7E-14 5.9E-19 126.8 8.7 85 348-433 19-110 (131)
242 2a3j_A U1 small nuclear ribonu 99.5 1.4E-14 4.7E-19 125.8 7.9 82 245-329 26-112 (127)
243 1p1t_A Cleavage stimulation fa 99.5 7.7E-15 2.6E-19 123.6 6.1 82 351-432 7-89 (104)
244 2jvr_A Nucleolar protein 3; RN 99.5 2.6E-14 9E-19 120.7 9.1 79 542-630 26-106 (111)
245 2xnq_A Nuclear polyadenylated 99.5 4.8E-14 1.7E-18 116.8 10.6 76 541-629 19-95 (97)
246 1why_A Hypothetical protein ri 99.5 6E-14 2.1E-18 116.4 11.2 79 349-432 14-94 (97)
247 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.9E-14 6.4E-19 128.4 8.7 81 244-324 59-140 (140)
248 1fj7_A Nucleolin RBD1, protein 99.5 2.2E-15 7.4E-20 126.2 2.3 80 246-326 15-94 (101)
249 2dnn_A RNA-binding protein 12; 99.5 4.1E-14 1.4E-18 119.3 10.1 78 351-430 15-92 (109)
250 2dha_A FLJ20171 protein; RRM d 99.5 5.6E-15 1.9E-19 127.3 4.9 81 247-328 22-106 (123)
251 2mss_A Protein (musashi1); RNA 99.5 1.2E-14 4.2E-19 114.3 6.5 74 354-428 1-75 (75)
252 2rs2_A Musashi-1, RNA-binding 99.5 6.2E-14 2.1E-18 118.9 10.9 82 350-432 23-105 (109)
253 2a3j_A U1 small nuclear ribonu 99.5 3.7E-14 1.3E-18 123.1 9.7 82 350-433 27-112 (127)
254 1x4c_A Splicing factor, argini 99.5 5.7E-14 2E-18 119.0 10.7 76 543-630 14-94 (108)
255 1x4a_A Splicing factor, argini 99.5 8.3E-14 2.8E-18 118.3 11.7 79 542-630 20-100 (109)
256 2dnq_A RNA-binding protein 4B; 99.5 6.9E-14 2.4E-18 114.3 10.8 79 542-633 6-84 (90)
257 2cq4_A RNA binding motif prote 99.5 2.8E-14 9.6E-19 122.3 8.8 81 351-432 24-105 (114)
258 1x5o_A RNA binding motif, sing 99.5 7.3E-14 2.5E-18 119.7 11.3 83 349-431 22-112 (114)
259 2ytc_A PRE-mRNA-splicing facto 99.5 6.5E-14 2.2E-18 113.1 10.3 77 348-429 8-85 (85)
260 1x4g_A Nucleolysin TIAR; struc 99.5 5.8E-14 2E-18 119.2 10.5 83 541-634 22-104 (109)
261 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.6E-14 5.5E-19 120.6 6.9 81 349-431 16-98 (100)
262 2kt5_A RNA and export factor-b 99.5 2.1E-13 7.1E-18 118.7 14.2 85 541-635 32-120 (124)
263 2hgn_A Heterogeneous nuclear r 99.5 4.2E-15 1.4E-19 131.0 3.3 80 245-326 43-122 (139)
264 2krb_A Eukaryotic translation 99.5 1.3E-14 4.6E-19 115.9 5.8 72 353-425 2-80 (81)
265 2j8a_A Histone-lysine N-methyl 99.5 2.3E-14 8E-19 120.6 7.4 76 249-324 3-93 (136)
266 2dis_A Unnamed protein product 99.5 5.9E-14 2E-18 119.2 10.1 84 350-433 6-94 (109)
267 2dnq_A RNA-binding protein 4B; 99.5 8.7E-14 3E-18 113.7 10.7 77 350-433 6-82 (90)
268 2cpj_A Non-POU domain-containi 99.5 5.5E-14 1.9E-18 117.1 9.7 80 349-433 12-91 (99)
269 2jvo_A Nucleolar protein 3; nu 99.5 4.4E-14 1.5E-18 119.5 9.2 77 541-630 28-104 (108)
270 2hgl_A HNRPF protein, heteroge 99.5 3.3E-14 1.1E-18 124.9 8.6 82 348-430 40-124 (136)
271 2dgt_A RNA-binding protein 30; 99.5 1.5E-13 5.2E-18 112.7 12.2 78 349-433 7-84 (92)
272 2cq2_A Hypothetical protein LO 99.5 4.7E-14 1.6E-18 118.7 9.2 77 541-628 22-105 (114)
273 1x4e_A RNA binding motif, sing 99.5 8.7E-15 3E-19 118.3 4.5 79 350-428 3-82 (85)
274 2cpj_A Non-POU domain-containi 99.5 7.5E-14 2.6E-18 116.3 10.1 79 542-631 13-91 (99)
275 2dgu_A Heterogeneous nuclear r 99.5 8.3E-14 2.9E-18 116.9 10.4 77 542-631 9-85 (103)
276 1x4b_A Heterogeneous nuclear r 99.5 7.3E-14 2.5E-18 120.1 10.3 82 351-433 26-108 (116)
277 2cpx_A Hypothetical protein FL 99.5 7.3E-15 2.5E-19 126.2 3.8 84 245-328 22-106 (115)
278 2hgn_A Heterogeneous nuclear r 99.5 9.9E-15 3.4E-19 128.6 4.7 81 350-432 44-124 (139)
279 3zzy_A Polypyrimidine tract-bi 99.5 9.3E-14 3.2E-18 119.7 10.1 81 546-636 30-113 (130)
280 1nu4_A U1A RNA binding domain; 99.5 4.2E-14 1.4E-18 117.4 7.8 81 350-432 6-90 (97)
281 2jvr_A Nucleolar protein 3; RN 99.5 7E-14 2.4E-18 118.1 9.1 80 350-432 26-106 (111)
282 3lqv_A PRE-mRNA branch site pr 99.5 1.3E-13 4.3E-18 118.4 10.8 80 543-632 7-88 (115)
283 2dnp_A RNA-binding protein 14; 99.5 1.8E-13 6.2E-18 111.7 11.2 77 350-433 7-83 (90)
284 2la4_A Nuclear and cytoplasmic 99.5 2.3E-14 7.8E-19 120.0 5.9 76 542-628 25-100 (101)
285 1wf1_A RNA-binding protein RAL 99.5 1.8E-13 6.1E-18 116.4 11.6 77 543-632 26-103 (110)
286 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.1E-14 7.2E-19 113.6 5.4 75 353-428 1-76 (77)
287 2ki2_A SS-DNA binding protein 99.5 1.2E-14 4.2E-19 118.8 4.1 80 353-433 2-82 (90)
288 2ytc_A PRE-mRNA-splicing facto 99.5 8.9E-14 3E-18 112.3 9.1 75 542-627 10-85 (85)
289 2fc8_A NCL protein; structure 99.5 3.7E-14 1.3E-18 118.9 7.0 81 244-327 11-92 (102)
290 2lcw_A RNA-binding protein FUS 99.2 2.7E-15 9.2E-20 129.1 0.0 85 246-330 5-98 (116)
291 2fc9_A NCL protein; structure 99.5 2.9E-14 9.9E-19 119.3 6.3 79 245-327 12-91 (101)
292 2cpd_A Apobec-1 stimulating pr 99.5 2.6E-13 8.9E-18 113.0 12.1 78 542-632 13-92 (99)
293 2f3j_A RNA and export factor b 99.5 4.8E-14 1.6E-18 130.4 8.3 82 245-327 85-167 (177)
294 3pgw_S U1-70K; protein-RNA com 99.5 5.8E-14 2E-18 148.5 10.1 87 246-332 100-187 (437)
295 2jvo_A Nucleolar protein 3; nu 99.5 1E-13 3.5E-18 117.2 9.6 77 349-432 28-104 (108)
296 2jwn_A Embryonic polyadenylate 99.5 1.1E-13 3.8E-18 120.5 10.1 80 352-432 36-116 (124)
297 1x4g_A Nucleolysin TIAR; struc 99.5 1.6E-13 5.5E-18 116.5 10.7 79 350-433 23-101 (109)
298 1x4f_A Matrin 3; structural ge 99.5 1.5E-13 5.3E-18 115.5 10.4 80 349-433 22-104 (112)
299 1nu4_A U1A RNA binding domain; 99.5 8.8E-14 3E-18 115.4 8.9 79 542-630 6-90 (97)
300 2dgt_A RNA-binding protein 30; 99.5 1.6E-13 5.6E-18 112.5 10.4 78 541-631 7-84 (92)
301 2e5g_A U6 snRNA-specific termi 99.5 7E-14 2.4E-18 115.2 8.1 77 246-327 6-82 (94)
302 2diu_A KIAA0430 protein; struc 99.5 1.2E-13 4E-18 109.9 8.8 77 543-630 7-85 (96)
303 2hvz_A Splicing factor, argini 99.5 5.4E-14 1.8E-18 117.6 7.2 77 545-631 1-77 (101)
304 2dnp_A RNA-binding protein 14; 99.5 1.5E-13 5.1E-18 112.3 9.7 76 542-630 7-82 (90)
305 2diu_A KIAA0430 protein; struc 99.5 1.9E-13 6.5E-18 108.7 9.8 76 350-434 6-87 (96)
306 2f3j_A RNA and export factor b 99.5 1.1E-13 3.8E-18 128.0 9.9 84 350-433 86-169 (177)
307 2fc8_A NCL protein; structure 99.5 3.1E-13 1.1E-17 113.2 11.8 83 348-433 11-94 (102)
308 1whx_A Hypothetical protein ri 99.5 7.4E-14 2.5E-18 118.8 8.0 77 351-432 9-85 (111)
309 2xnq_A Nuclear polyadenylated 99.5 2.5E-13 8.6E-18 112.4 10.9 76 349-431 19-95 (97)
310 2lmi_A GRSF-1, G-rich sequence 99.5 4E-14 1.4E-18 119.7 6.2 80 350-430 9-91 (107)
311 2e5j_A Methenyltetrahydrofolat 99.5 1.3E-13 4.6E-18 114.3 9.1 80 349-432 16-95 (97)
312 2e5j_A Methenyltetrahydrofolat 99.5 1.9E-13 6.6E-18 113.3 10.0 77 542-629 17-94 (97)
313 2kvi_A Nuclear polyadenylated 99.5 7.6E-14 2.6E-18 115.5 7.5 76 542-630 8-84 (96)
314 1wel_A RNA-binding protein 12; 99.5 8.6E-14 2.9E-18 121.1 8.1 83 349-432 22-105 (124)
315 1x5p_A Negative elongation fac 99.5 3.9E-13 1.3E-17 111.4 11.7 82 542-636 13-94 (97)
316 1fjc_A Nucleolin RBD2, protein 99.5 1.2E-13 4.2E-18 114.3 8.1 79 350-432 14-92 (96)
317 2cq2_A Hypothetical protein LO 99.5 2.9E-13 1E-17 113.9 10.4 78 350-432 23-107 (114)
318 2la4_A Nuclear and cytoplasmic 99.5 1.4E-13 4.7E-18 115.2 8.2 75 351-430 26-100 (101)
319 2dha_A FLJ20171 protein; RRM d 99.4 8.3E-14 2.8E-18 120.0 6.7 80 350-430 21-104 (123)
320 2cpd_A Apobec-1 stimulating pr 99.4 1.2E-12 4.2E-17 108.9 13.5 79 348-433 11-91 (99)
321 3beg_B Splicing factor, argini 99.4 9.7E-14 3.3E-18 118.9 6.9 69 246-321 14-83 (115)
322 1iqt_A AUF1, heterogeneous nuc 99.4 4.6E-14 1.6E-18 111.0 4.4 74 354-428 1-75 (75)
323 2e5i_A Heterogeneous nuclear r 99.4 1.1E-12 3.8E-17 112.6 13.2 79 546-635 27-108 (124)
324 3q2s_C Cleavage and polyadenyl 99.4 1.2E-13 4E-18 133.5 7.9 81 351-431 67-150 (229)
325 2hgm_A HNRPF protein, heteroge 99.4 1.5E-13 5.1E-18 118.6 7.7 80 349-430 39-120 (126)
326 2cpx_A Hypothetical protein FL 99.4 3.4E-13 1.2E-17 115.7 9.9 81 350-433 23-107 (115)
327 1x5p_A Negative elongation fac 99.4 1.4E-12 4.9E-17 108.0 13.3 78 349-433 12-89 (97)
328 2e44_A Insulin-like growth fac 99.4 1.7E-13 5.9E-18 113.4 7.6 78 246-327 13-92 (96)
329 1fjc_A Nucleolin RBD2, protein 99.4 2.2E-13 7.5E-18 112.8 8.1 79 541-629 13-91 (96)
330 2cqh_A IGF-II mRNA-binding pro 99.4 2.4E-13 8.1E-18 111.8 8.2 78 350-433 6-85 (93)
331 1wf1_A RNA-binding protein RAL 99.4 5.5E-13 1.9E-17 113.3 10.7 76 350-432 25-101 (110)
332 1wg1_A KIAA1579 protein, homol 99.4 2.5E-13 8.4E-18 110.4 8.0 79 543-633 4-82 (88)
333 2cqh_A IGF-II mRNA-binding pro 99.4 1.9E-13 6.5E-18 112.4 7.4 79 542-632 6-86 (93)
334 2kvi_A Nuclear polyadenylated 99.4 2.2E-13 7.7E-18 112.6 7.8 77 350-433 8-85 (96)
335 2hzc_A Splicing factor U2AF 65 99.4 1.9E-13 6.5E-18 110.8 7.2 73 245-323 3-86 (87)
336 3zzy_A Polypyrimidine tract-bi 99.4 7.7E-13 2.6E-17 114.0 11.1 78 352-433 28-108 (130)
337 2dnl_A Cytoplasmic polyadenyla 99.4 1.4E-13 4.8E-18 117.8 6.5 76 245-323 5-84 (114)
338 2xs2_A Deleted in azoospermia- 99.4 1.6E-13 5.6E-18 114.9 6.7 82 350-433 7-88 (102)
339 1sjr_A Polypyrimidine tract-bi 99.4 4.7E-13 1.6E-17 119.8 10.0 78 545-632 47-127 (164)
340 1fj7_A Nucleolin RBD1, protein 99.4 5.4E-14 1.9E-18 117.6 3.7 81 350-432 15-96 (101)
341 2e44_A Insulin-like growth fac 99.4 5.2E-13 1.8E-17 110.5 9.4 81 349-432 12-93 (96)
342 2e5g_A U6 snRNA-specific termi 99.4 1.1E-12 3.9E-17 107.9 10.8 78 350-432 6-83 (94)
343 3egn_A RNA-binding protein 40; 99.4 4.7E-14 1.6E-18 126.2 2.5 82 245-326 42-129 (143)
344 2e5i_A Heterogeneous nuclear r 99.4 2.3E-12 7.7E-17 110.7 12.8 76 353-433 26-104 (124)
345 2pe8_A Splicing factor 45; RRM 99.4 1.1E-12 3.7E-17 109.8 10.6 81 350-430 6-93 (105)
346 3egn_A RNA-binding protein 40; 99.4 1.7E-13 5.6E-18 122.6 5.9 81 350-432 43-131 (143)
347 3beg_B Splicing factor, argini 99.4 3.4E-13 1.2E-17 115.5 7.6 74 543-628 15-93 (115)
348 2j8a_A Histone-lysine N-methyl 99.4 4.2E-13 1.4E-17 113.1 7.8 78 353-430 3-95 (136)
349 1wg1_A KIAA1579 protein, homol 99.4 6.7E-13 2.3E-17 107.8 8.9 76 351-432 4-79 (88)
350 1sjr_A Polypyrimidine tract-bi 99.4 1.1E-12 3.7E-17 117.5 10.3 79 351-432 45-125 (164)
351 2lcw_A RNA-binding protein FUS 99.1 3.1E-14 1.1E-18 122.4 0.0 84 350-433 5-97 (116)
352 3d2w_A TAR DNA-binding protein 99.4 1.2E-12 4.1E-17 106.4 9.3 75 542-630 9-85 (89)
353 2bz2_A Negative elongation fac 99.4 8E-13 2.7E-17 114.0 8.4 79 542-633 37-115 (121)
354 2dnl_A Cytoplasmic polyadenyla 99.4 3.8E-12 1.3E-16 108.8 11.2 77 350-429 6-86 (114)
355 2hzc_A Splicing factor U2AF 65 99.4 1.8E-12 6.2E-17 105.0 8.6 72 350-427 4-86 (87)
356 2voo_A Lupus LA protein; RNA-b 99.4 8.2E-13 2.8E-17 124.0 7.4 80 246-326 107-186 (193)
357 3d2w_A TAR DNA-binding protein 99.4 3.2E-12 1.1E-16 103.8 9.9 76 349-432 8-85 (89)
358 3v4m_A Splicing factor U2AF 65 99.3 4.6E-12 1.6E-16 106.0 10.0 82 350-431 3-97 (105)
359 1wf0_A TDP-43, TAR DNA-binding 99.3 1.2E-12 4.2E-17 106.3 5.9 82 543-636 4-85 (88)
360 2voo_A Lupus LA protein; RNA-b 99.3 4.7E-12 1.6E-16 118.8 10.5 80 352-432 109-188 (193)
361 1wf0_A TDP-43, TAR DNA-binding 99.3 2.8E-12 9.7E-17 104.1 7.3 78 350-433 3-80 (88)
362 2bz2_A Negative elongation fac 99.3 4.9E-12 1.7E-16 109.1 8.7 77 350-433 37-113 (121)
363 2dit_A HIV TAT specific factor 99.3 1.5E-11 5.1E-16 104.7 11.4 82 348-432 11-103 (112)
364 3u1l_A PRE-mRNA-splicing facto 99.3 4.1E-12 1.4E-16 121.8 8.3 87 541-630 131-230 (240)
365 3ue2_A Poly(U)-binding-splicin 99.3 1E-11 3.5E-16 105.9 9.3 80 351-430 19-108 (118)
366 3u1l_A PRE-mRNA-splicing facto 99.2 9.3E-12 3.2E-16 119.3 8.2 79 349-432 131-230 (240)
367 1jmt_A Splicing factor U2AF 35 99.2 5.4E-12 1.8E-16 105.5 5.3 72 357-428 20-103 (104)
368 3tht_A Alkylated DNA repair pr 99.2 2E-11 6.8E-16 123.5 9.4 82 539-629 13-99 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 6E-11 2.1E-15 97.8 10.1 84 544-637 10-98 (100)
370 3s6e_A RNA-binding protein 39; 99.2 6.8E-11 2.3E-15 100.1 10.3 79 350-431 5-93 (114)
371 3dxb_A Thioredoxin N-terminall 99.2 4.8E-11 1.6E-15 115.1 9.2 88 542-634 122-218 (222)
372 2dnr_A Synaptojanin-1; RRM dom 99.1 4.8E-10 1.6E-14 88.4 8.8 82 541-629 4-86 (91)
373 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.1E-09 3.8E-14 90.2 10.9 75 352-432 10-91 (100)
374 3tht_A Alkylated DNA repair pr 99.0 6.1E-10 2.1E-14 112.6 10.5 76 349-429 15-97 (345)
375 1owx_A Lupus LA protein, SS-B, 98.9 2.1E-09 7.3E-14 90.8 8.3 83 542-635 16-102 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 2.8E-09 9.7E-14 84.3 7.1 81 541-627 12-93 (95)
377 1owx_A Lupus LA protein, SS-B, 98.8 1.7E-08 5.6E-13 85.3 10.2 78 348-430 14-95 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.7 3.7E-08 1.3E-12 77.7 8.7 74 350-431 5-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.5 2.9E-07 1E-11 88.3 9.9 79 352-430 124-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.4 3.5E-07 1.2E-11 72.4 6.3 71 350-428 13-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.4 9.3E-07 3.2E-11 71.2 8.6 75 543-628 20-99 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.3 2.8E-06 9.5E-11 68.4 8.3 73 352-429 21-98 (117)
383 1wey_A Calcipressin 1; structu 97.8 6.9E-05 2.3E-09 60.4 7.4 81 544-630 5-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.8 8.2E-05 2.8E-09 59.6 7.7 88 247-365 7-99 (104)
385 1wey_A Calcipressin 1; structu 97.4 0.00033 1.1E-08 56.4 7.2 73 352-429 5-82 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.3 0.0008 2.7E-08 55.8 8.2 72 543-627 23-95 (119)
387 3p3d_A Nucleoporin 53; structu 97.1 0.00034 1.2E-08 58.8 4.0 78 544-633 7-103 (132)
388 1whv_A Poly(A)-specific ribonu 97.0 0.0031 1.1E-07 49.8 8.5 56 350-413 14-69 (100)
389 2dhx_A Poly (ADP-ribose) polym 97.0 0.015 5.2E-07 46.5 12.5 74 351-432 7-85 (104)
390 1uw4_A UPF3X; nonsense mediate 96.8 0.005 1.7E-07 48.7 8.1 67 353-419 2-71 (91)
391 1wwh_A Nucleoporin 35, nucleop 96.7 0.0074 2.5E-07 50.1 8.9 74 352-432 24-98 (119)
392 1uw4_A UPF3X; nonsense mediate 96.6 0.0062 2.1E-07 48.2 7.5 67 249-315 2-71 (91)
393 1whv_A Poly(A)-specific ribonu 96.6 0.0062 2.1E-07 48.1 7.1 56 543-612 15-70 (100)
394 3ctr_A Poly(A)-specific ribonu 96.4 0.0063 2.2E-07 48.3 5.9 60 544-617 6-66 (101)
395 3ctr_A Poly(A)-specific ribonu 96.2 0.0048 1.6E-07 48.9 4.7 54 353-414 7-60 (101)
396 2l08_A Regulator of nonsense t 95.7 0.033 1.1E-06 44.3 7.4 79 351-429 8-94 (97)
397 3p3d_A Nucleoporin 53; structu 95.2 0.029 9.8E-07 47.2 5.6 76 352-429 7-97 (132)
398 2l08_A Regulator of nonsense t 93.7 0.12 4E-06 41.1 5.8 74 544-627 9-94 (97)
399 3pq1_A Poly(A) RNA polymerase; 93.2 0.04 1.4E-06 57.5 3.1 64 246-315 51-114 (464)
400 3pq1_A Poly(A) RNA polymerase; 89.8 0.14 4.7E-06 53.5 2.6 55 352-411 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 74.8 7.9 0.00027 41.1 8.6 55 352-414 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 70.9 10 0.00035 40.2 8.4 57 543-613 439-495 (507)
403 2fiu_A Conserved hypothetical 52.1 39 0.0013 26.7 6.7 60 546-609 6-72 (99)
404 3lo3_A Uncharacterized conserv 51.6 51 0.0018 25.7 7.2 53 557-609 12-71 (94)
405 4eyt_A Telomerase associated p 39.6 1.2E+02 0.0042 23.0 9.4 56 351-413 11-66 (129)
406 3hhl_A RPA0582; alpha-beta-bar 38.8 83 0.0028 26.7 7.0 53 557-609 44-106 (143)
407 2okq_A Hypothetical protein YB 36.7 39 0.0013 28.3 4.4 76 548-623 27-132 (141)
408 2g0c_A ATP-dependent RNA helic 32.7 17 0.00057 27.0 1.5 55 569-627 16-75 (76)
409 3lpe_A Putative transcription 30.5 1.1E+02 0.0037 23.7 5.9 46 569-614 27-73 (92)
410 4eyt_A Telomerase associated p 29.6 1.8E+02 0.0063 22.0 8.1 57 543-612 11-67 (129)
411 4e8u_A Putative uncharacterize 28.9 38 0.0013 29.7 3.3 87 546-633 14-118 (172)
412 4e8u_A Putative uncharacterize 23.7 91 0.0031 27.3 4.7 58 249-309 13-82 (172)
413 2g0c_A ATP-dependent RNA helic 23.5 1.8E+02 0.0062 21.1 5.9 57 259-324 12-74 (76)
414 3h7h_B Transcription elongatio 22.5 56 0.0019 26.2 2.9 52 580-633 40-91 (106)
415 2f06_A Conserved hypothetical 21.8 1.9E+02 0.0064 24.1 6.5 48 568-616 86-135 (144)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.3e-40 Score=335.61 Aligned_cols=247 Identities=16% Similarity=0.258 Sum_probs=209.5
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
.....++|||+|||+++|+++|.++|..||.|..|.|+.+..+ ++|||||+|.+.++|.+||++++..+.|+.|.|.+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 3457789999999999999999999999999999999998754 58999999999999999999999999999999976
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccCCCCCcceEEEEEecC
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFAR 402 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afVef~~ 402 (639)
+ ...+|||+|||..+++++|.++|..|| .|..|.|+.+..+.++|||||+|.+
T Consensus 115 ~--------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~ 168 (292)
T 2ghp_A 115 L--------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTS 168 (292)
T ss_dssp C--------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSS
T ss_pred C--------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECC
Confidence 4 257999999999999999999999999 9999999988778889999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCC
Q 006608 403 LEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 482 (639)
Q Consensus 403 ~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (639)
.++|.+|+..|+|..|.|+.|.|.++.+.......
T Consensus 169 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------------------------------- 203 (292)
T 2ghp_A 169 KEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------------------------------- 203 (292)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCC---------------------------------------------------
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc---------------------------------------------
Confidence 99999999999999999999999997644311000
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCC-CCch
Q 006608 483 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKN-ETYE 561 (639)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~-~~~~ 561 (639)
.....+..+|||.|| |.. ++
T Consensus 204 -------------------------------------------------------~~~~~~~~~l~v~nl--p~~~~t-- 224 (292)
T 2ghp_A 204 -------------------------------------------------------DSATLEGREIMIRNL--STELLD-- 224 (292)
T ss_dssp ----------------------------------------------------------CCTTTEEEEEEE--CTTTCC--
T ss_pred -------------------------------------------------------cccCCCCceEEEECC--CcccCC--
Confidence 000124569999999 766 66
Q ss_pred hhHhhHHHHHHHHhhhcCcEEEEEEecC------CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 562 EFDMDIKEDVEGECSKFGKLKHIFVEKD------SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 562 ~~~~~~~~dl~~~f~~~G~V~~v~v~~~------~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
.++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|.+|+ .|||..|+|+.|.|.|+.++
T Consensus 225 ------~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 225 ------ENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ------HHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ------HHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 8999999999999999998543 4699999999999999999 99999999999999999865
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.1e-39 Score=330.36 Aligned_cols=239 Identities=20% Similarity=0.271 Sum_probs=212.9
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
+.++|||+|||+++|+++|.++|..|| |..|.+ +.++|||||+|.+.++|.+||. +++..+.|+.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~- 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ- 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-
Confidence 568999999999999999999999999 999888 4678999999999999999996 9999999999999763
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 404 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~ 404 (639)
....+|||+|||..+++++|.++|..||.|..|.++.+ .+|.++|||||+|.+.+
T Consensus 93 ------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 93 ------------------------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp ------------------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ------------------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH
Confidence 22478999999999999999999999999999999887 58999999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCc
Q 006608 405 DARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPA 484 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (639)
+|.+|+..|+|..|+|+.|.|.++......
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-------------------------------------------------- 178 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAGQLT-------------------------------------------------- 178 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGGGCC--------------------------------------------------
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCCCC--------------------------------------------------
Confidence 999999999999999999999997543210
Q ss_pred ccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCC-Cchhh
Q 006608 485 VNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE-TYEEF 563 (639)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~-~~~~~ 563 (639)
....+..+|||.|| |..+ +
T Consensus 179 ------------------------------------------------------~~~~~~~~l~v~nl--p~~~~~---- 198 (284)
T 3smz_A 179 ------------------------------------------------------PALLHSRCLCVDRL--PPGFND---- 198 (284)
T ss_dssp ------------------------------------------------------TTTTSCSEEEEECC--CTTCCC----
T ss_pred ------------------------------------------------------cccCCccEEEEecC--CcccCC----
Confidence 00124569999999 7663 5
Q ss_pred HhhHHHHHHHHhhhcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhh
Q 006608 564 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 631 (639)
Q Consensus 564 ~~~~~~dl~~~f~~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~ 631 (639)
+++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.+...
T Consensus 199 ----~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 199 ----VDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ----HHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred ----HHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 8999999999999999998654 468999999999999999999999999999999999987654
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=9.2e-31 Score=252.61 Aligned_cols=171 Identities=25% Similarity=0.419 Sum_probs=150.9
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
+..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||. +++..+.|+.|.+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34566899999999999999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred cchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecC
Q 006608 323 PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFAR 402 (639)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~ 402 (639)
++........ ....+|||+|||..+++++|+++|.+||.|..|.|+.+. +.++|||||+|.+
T Consensus 91 ~~~~~~~~~~-----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~ 152 (213)
T 4f02_A 91 WSQRDPSLRK-----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFET 152 (213)
T ss_dssp ECCCCTHHHH-----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESS
T ss_pred cccccccccc-----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCC
Confidence 7654332221 124689999999999999999999999999999998874 3479999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 403 LEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 403 ~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
.++|.+||..|||..|+|+.|.|.++..+.
T Consensus 153 ~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 153 QEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 999999999999999999999999986543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.5e-30 Score=244.71 Aligned_cols=177 Identities=20% Similarity=0.397 Sum_probs=151.9
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
.....++|||+|||+++|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||++++..+.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecC
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFAR 402 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~ 402 (639)
+......... ....+..+|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+
T Consensus 89 ~~~~~~~~~~-------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 89 AVSREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp CCC------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred ccCccccccc-------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 6543222111 11234689999999999999999999999999999999988 588999999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEeeccCCcc
Q 006608 403 LEDARNALNLNGQLEIVGRAIKVSAVTDQSGL 434 (639)
Q Consensus 403 ~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~~ 434 (639)
.++|.+|+.. +|..|+|+.|.|.++.++...
T Consensus 156 ~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred HHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999986 789999999999999877643
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-29 Score=232.84 Aligned_cols=163 Identities=22% Similarity=0.464 Sum_probs=148.7
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHH-HhcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al-~~~~~~~~g~~l~v~~~~~~ 327 (639)
++|||+|||+++|+++|.++|++||.|..|.|+.++. +.++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999976 679999999999999999999 59999999999999876432
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHH
Q 006608 328 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDA 406 (639)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A 406 (639)
.. ....+..+|||+|||..+++++|+++|++||.|..+.++.+ .+|.++|+|||+|.+.++|
T Consensus 80 ~~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 80 QQ-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 21 12245789999999999999999999999999999999988 6889999999999999999
Q ss_pred HHHHHHcCCceecCeEEEEEeec
Q 006608 407 RNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 407 ~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+|+..|||..|+|+.|.|.|+.
T Consensus 143 ~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 143 QNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999975
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=3.9e-29 Score=231.92 Aligned_cols=163 Identities=24% Similarity=0.412 Sum_probs=150.6
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999997 99999999999998875
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLE 404 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~ 404 (639)
+... .....+|+|+|||..+++++|+++|++||.|..+.++.+. ++.++|+|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 3221 1346899999999999999999999999999999999884 8889999999999999
Q ss_pred HHHHHHHHcCCceecC--eEEEEEee
Q 006608 405 DARNALNLNGQLEIVG--RAIKVSAV 428 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g--~~i~v~~~ 428 (639)
+|.+|+..|+|..|.| ++|.|.|+
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999988 99999885
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=1.8e-29 Score=234.05 Aligned_cols=164 Identities=23% Similarity=0.446 Sum_probs=149.9
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +..+.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999983 6789999999987654
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~ 405 (639)
.... .+..+|||+|||..+++++|.++|++||.|..|.++.+ .+|.++|||||+|.+.++
T Consensus 81 ~~~~-------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 81 RDEQ-------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp HHHH-------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred hhhc-------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 4322 12468999999999999999999999999999999988 589999999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEeeccC
Q 006608 406 ARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
|.+|++ ++|..|+|+.|.|.++.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999998 8999999999999998764
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=2.2e-29 Score=243.85 Aligned_cols=180 Identities=19% Similarity=0.392 Sum_probs=153.6
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++|||+|||+++|+++|+++|..||.|..|.|+.+..+|.++|||||+|.+.++|.+||+ +++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 356899999999999999999999999999999999999999999999999999999999997 9999999999999765
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCH
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 403 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~ 403 (639)
............. ........+|||+|||..+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.
T Consensus 106 ~~~~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 106 SNIGQAQPIIDQL--------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp SCCGGGHHHHHHH--------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCccccchhhhhh--------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 4332111000000 001134689999999999999999999999999999999988 5889999999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 404 EDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
++|.+|+..|||..|+|+.|.|.|+.....
T Consensus 178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999999999999987754
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=6e-29 Score=230.34 Aligned_cols=162 Identities=23% Similarity=0.398 Sum_probs=148.6
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
.++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999999899999999999999999999997 999999999999987753
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 405 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~ 405 (639)
... .....+|+|+|||..+++++|+++|++||.|..+.++.+ .+|.++|+|||+|.+.++
T Consensus 82 ~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 82 SSA-------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp CCG-------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Ccc-------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 221 123578999999999999999999999999999999888 488899999999999999
Q ss_pred HHHHHHHcCCceecCeE--EEEEee
Q 006608 406 ARNALNLNGQLEIVGRA--IKVSAV 428 (639)
Q Consensus 406 A~~A~~~l~g~~i~g~~--i~v~~~ 428 (639)
|.+|+..|||..|.|+. |.|.||
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999964 888875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1e-28 Score=230.70 Aligned_cols=165 Identities=27% Similarity=0.458 Sum_probs=146.5
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCC--CcccEEEEEEcccccHHHHHH-hcCCccC---Cceee
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSR--RSKGVGYVEFYDVMSVPMAIA-LSGQPLL---GQPVM 320 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~--~~~g~afV~f~~~~~a~~al~-~~~~~~~---g~~l~ 320 (639)
+.++|||+|||+++|+++|+++|.+||.|..|.|+.+..++ .++|||||+|.+.++|.+||+ +++..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999887 899999999999999999996 9998775 56777
Q ss_pred eccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEe
Q 006608 321 VKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 400 (639)
Q Consensus 321 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef 400 (639)
+.++...... .....+|||+|||..+++++|+++|++||.|..|.|+.+.+|.++|||||+|
T Consensus 82 ~~~~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKNN------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCCS------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Eccccccccc------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 7665432211 1236789999999999999999999999999999999988899999999999
Q ss_pred cCHHHHHHHHHHcCCceec---CeEEEEEeec
Q 006608 401 ARLEDARNALNLNGQLEIV---GRAIKVSAVT 429 (639)
Q Consensus 401 ~~~~~A~~A~~~l~g~~i~---g~~i~v~~~~ 429 (639)
.+.++|.+|+..|||..+. |++|.|.|+.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999998776 4999999973
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=2.4e-28 Score=235.68 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=145.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..+++..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45789999999999999999999999999999999988 58999999999999999999999999999999999999886
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006608 429 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 508 (639)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (639)
.......
T Consensus 93 ~~~~~~~------------------------------------------------------------------------- 99 (213)
T 4f02_A 93 QRDPSLR------------------------------------------------------------------------- 99 (213)
T ss_dssp CCCTHHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 5433100
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec
Q 006608 509 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 588 (639)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~ 588 (639)
.....+|||.|| |..++ +++|.++|+.||.|..|.|+.
T Consensus 100 --------------------------------~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 100 --------------------------------KSGVGNIFIKNL--DKSID--------NKALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp --------------------------------HHCTTEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEE
T ss_pred --------------------------------ccccccceECCc--ccccH--------HHHHHHHHhhcCCeEEEEeec
Confidence 002238999999 77777 899999999999999999854
Q ss_pred C---CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchh
Q 006608 589 D---SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 630 (639)
Q Consensus 589 ~---~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~ 630 (639)
+ ++|+|||+|.+.++|++|++.|||..|+|+.|.|.|+.+..
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 3 57999999999999999999999999999999999998653
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=4.4e-27 Score=237.49 Aligned_cols=263 Identities=17% Similarity=0.279 Sum_probs=154.7
Q ss_pred CCCCceEEEcCCCCcCCHHHHH----HHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
..+.++|||+|||..+++++|+ ++|..||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3568999999999999999966 8999999999999886 577899999999999999999999999999999999
Q ss_pred EEeeccCCcccCCCCCCCCCCCCCCCC--CcccchhhHHHHHHHhhhcCCCcccCCCCCCCcc--cCCCCCCCCcccccc
Q 006608 425 VSAVTDQSGLQDLGANTTGDFDDDEGG--GLSLNARSRALLMQKLDRSGSATTIAGSAVTPAV--NSTALPLPTAPLLGA 500 (639)
Q Consensus 425 v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 500 (639)
|.|+........... ..+...... .............................+.... +............|.
T Consensus 84 v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMK---GTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEeccCcchhhhhc---CCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999976543111110 000000000 0000000000000000000000000000000000 000000000000000
Q ss_pred cccc--cccCCCCCCCCCCCCCCCCCccccCCCCCCC--CCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhh
Q 006608 501 ASAV--STLVPPLVQGTVPTHPGQLGTALQVPTASVP--IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS 576 (639)
Q Consensus 501 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~ 576 (639)
.+.+ +.+.+++........+.........+ ..++ .......++++|||.|| |..++ +++|+++|+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~F~ 229 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMP-GQMPPAQPLSENPPNHILFLTNL--PEETN--------ELMLSMLFN 229 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCc-cccCccCCccCCCCCCEEEEeCC--CCcCC--------HHHHHHHHH
Confidence 0000 00000000000000000000000000 0111 11123557889999999 66666 899999999
Q ss_pred hcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccC-CeEEEEEEcC
Q 006608 577 KFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMV 627 (639)
Q Consensus 577 ~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~-g~~i~v~~~~ 627 (639)
+||.|..|.|....+|+|||+|.+.++|.+|+..|||..|. |+.|.|+|+.
T Consensus 230 ~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 230 QFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred hcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999998777799999999999999999999999999 9999999975
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.9e-27 Score=219.98 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=142.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
++|||+|||..+++++|+++|++||.|..|.|+.+..+.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999998878899999999999999999999999999999999999975332
Q ss_pred cccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCC
Q 006608 433 GLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLV 512 (639)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (639)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (166)
T 3md3_A 81 QS------------------------------------------------------------------------------ 82 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC---
Q 006608 513 QGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--- 589 (639)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~--- 589 (639)
...++.+|+|.|| |..++ .++|.++|+.||.|..+.+..+
T Consensus 83 ---------------------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~ 125 (166)
T 3md3_A 83 ---------------------------SSDDTFNLFVGDL--NVNVD--------DETLRNAFKDFPSYLSGHVMWDMQT 125 (166)
T ss_dssp ---------------------------CCTTCEEEEEESC--CTTCC--------HHHHHHHHTTSTTEEEEEEEECTTT
T ss_pred ---------------------------CCCCCceEEECCC--CCCCC--------HHHHHHHHhccCCeeEEEEEecCCC
Confidence 0124569999999 77766 8999999999999999998643
Q ss_pred --CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCc
Q 006608 590 --SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 628 (639)
Q Consensus 590 --~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~ 628 (639)
++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.+
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 368999999999999999999999999999999999863
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=1.4e-28 Score=229.94 Aligned_cols=166 Identities=23% Similarity=0.379 Sum_probs=145.3
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
...+.++|||+|||+.+|+++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+||+|++..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 3456789999999999999999999999998766 445555678899999999999999999999999999999999988
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCH
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 403 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~ 403 (639)
+...... ...+..+|||+|||..+++++|+++|.+||.|..+ ..++.++|||||+|.+.
T Consensus 88 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 88 PKGRDSK-----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp CCCSSCS-----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSH
T ss_pred CCCcccc-----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCH
Confidence 7543211 12346899999999999999999999999988766 55678899999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 404 EDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 404 ~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999998765
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.8e-27 Score=227.05 Aligned_cols=180 Identities=20% Similarity=0.366 Sum_probs=149.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccC
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRA----G-------KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLL 315 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~ 315 (639)
..++|||+|||+.+|+++|.++|..| | .|..+.+ +.++|||||+|.+.++|.+||.|++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 56899999999999999999999999 5 5666655 45789999999999999999999999999
Q ss_pred Cceeeeccchhhhhhhcccccc-CCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcc
Q 006608 316 GQPVMVKPSEAEKNLVQSNSSI-AGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCK 393 (639)
Q Consensus 316 g~~l~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~ 393 (639)
|+.|.|.++............. .............+..+|||+|||..+++++|+++|.+||.|..|.++.+ .+|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 9999998876543221111100 00111112223356799999999999999999999999999999999988 489999
Q ss_pred eEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 394 GFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 394 g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999987664
No 16
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=4.3e-27 Score=218.12 Aligned_cols=159 Identities=21% Similarity=0.400 Sum_probs=142.3
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
+.++|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3689999999999999999999999999999999988 588899999999999999999999999999999999999975
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
....
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3321
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~ 589 (639)
..+..+|+|.|| |..++ +++|.++|++||.|..+.++.+
T Consensus 86 -------------------------------~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~ 124 (168)
T 1b7f_A 86 -------------------------------SIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGSIVQKNILRD 124 (168)
T ss_dssp -------------------------------TTTTCEEEEESC--CTTCC--------HHHHHHHHTSSSCEEEEEEEEC
T ss_pred -------------------------------cCCCCCEEEeCC--CCCCC--------HHHHHHhhhcCCcEEEEEEEEc
Confidence 013459999999 66666 8999999999999999998654
Q ss_pred C-----CccEEEEecchHHHHHHHHHhcCcccCC--eEEEEEEc
Q 006608 590 S-----AGFVYLRFENTQSAFAAQRALHGRWFAG--KMITATFM 626 (639)
Q Consensus 590 ~-----~g~afV~F~s~e~A~~A~~~lng~~~~g--~~i~v~~~ 626 (639)
. +|+|||+|.+.++|.+|+..|||..|.| ++|.|.||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 3 5899999999999999999999999988 99999986
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.3e-27 Score=222.61 Aligned_cols=157 Identities=22% Similarity=0.436 Sum_probs=142.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccC
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRA----G-------KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLL 315 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~ 315 (639)
+.++|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.+.++|.+||++++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 56899999999999999999999999 6 67777764 4689999999999999999999999999
Q ss_pred CceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcce
Q 006608 316 GQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKG 394 (639)
Q Consensus 316 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g 394 (639)
|+.|.|.++.... ......+|||+|||..+++++|+++|++||.|..|.++.+ .+|.++|
T Consensus 77 g~~i~v~~~~~~~-------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ-------------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp TEECEEECCSSCC-------------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred CceeeecCCcccC-------------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999998753221 1123688999999999999999999999999999999998 5899999
Q ss_pred EEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 395 FGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 395 ~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999999999999999999999999999999986
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=7.6e-27 Score=216.12 Aligned_cols=158 Identities=30% Similarity=0.486 Sum_probs=141.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|..||.|..|.++.+. +|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999884 899999999999999999999999999999999999999753
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 321
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~- 589 (639)
.....+|+|.|| |..++ .++|.++|++||.|..+.+..+
T Consensus 85 ------------------------------~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 85 ------------------------------SIRDANLYVSGL--PKTMT--------QKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp ------------------------------GGTTCEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECT
T ss_pred ------------------------------cCCCCcEEECCC--CCcCC--------HHHHHHHHHhcCCEeEEEEEecC
Confidence 012348999999 66666 8999999999999999998654
Q ss_pred ----CCccEEEEecchHHHHHHHHHhcCcccCCeE--EEEEEc
Q 006608 590 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKM--ITATFM 626 (639)
Q Consensus 590 ----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~--i~v~~~ 626 (639)
++|+|||+|.+.++|.+|++.|||..|.|+. |.|.||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 3689999999999999999999999999964 999886
No 19
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.1e-26 Score=224.75 Aligned_cols=179 Identities=24% Similarity=0.429 Sum_probs=148.4
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 579999999999999999999999999999999988 4888999999999999999999999999999999999987654
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
.... .........
T Consensus 108 ~~~~--------------------------~~~~~~~~~----------------------------------------- 120 (216)
T 2qfj_A 108 IGQA--------------------------QPIIDQLAE----------------------------------------- 120 (216)
T ss_dssp CGGG--------------------------HHHHHHHHH-----------------------------------------
T ss_pred cccc--------------------------chhhhhhhc-----------------------------------------
Confidence 3310 000000000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~- 589 (639)
......+|||.|| |..++ +++|+++|++||.|..|.|..+
T Consensus 121 -----------------------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~ 161 (216)
T 2qfj_A 121 -----------------------------EARAFNRIYVASV--HQDLS--------DDDIKSVFEAFGKIKSATLARDP 161 (216)
T ss_dssp -----------------------------HHTTSCEEEEECC--CTTCC--------HHHHHHHHTTSSCEEEEEEEECT
T ss_pred -----------------------------ccCCCcEEEEeCC--CCcCC--------HHHHHHHHhccCCeeEEEEEecC
Confidence 0114459999999 76666 8999999999999999998654
Q ss_pred ----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcccCC
Q 006608 590 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 636 (639)
Q Consensus 590 ----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~~~~ 636 (639)
++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.+.......|
T Consensus 162 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~~p 212 (216)
T 2qfj_A 162 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTP 212 (216)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTSCC
T ss_pred CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCCCC
Confidence 36899999999999999999999999999999999998876655443
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=6.7e-27 Score=236.36 Aligned_cols=170 Identities=21% Similarity=0.260 Sum_probs=155.9
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
...+|||+|||+.+|+++|.++|..||.|..+.|+.+..+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999995 99999999999999876
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcC-CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHH
Q 006608 326 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM-TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLE 404 (639)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~ 404 (639)
+..... ......+|||+|||..+ ++++|+++|+.||.|..|.|+.+.+|.++|+|||+|.+.+
T Consensus 174 ~~~~~~----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 174 AGQLTP----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp GGGCCT----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred CCCCCc----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 543211 12446899999999995 9999999999999999999999888999999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEeeccCC
Q 006608 405 DARNALNLNGQLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 405 ~A~~A~~~l~g~~i~g~~i~v~~~~~~~ 432 (639)
+|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999999999999999999999997765
No 21
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1.7e-26 Score=219.95 Aligned_cols=170 Identities=21% Similarity=0.396 Sum_probs=141.2
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
...++|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 45789999999999999999999999999999999988 5788999999999999999999986 889999999999997
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006608 429 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 508 (639)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (639)
........
T Consensus 90 ~~~~~~~~------------------------------------------------------------------------ 97 (196)
T 1l3k_A 90 VSREDSQR------------------------------------------------------------------------ 97 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCcccccc------------------------------------------------------------------------
Confidence 54431000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec
Q 006608 509 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 588 (639)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~ 588 (639)
+ ....+..+|||.|| |..++ +++|.++|+.||.|..|.|+.
T Consensus 98 ---------------------~--------~~~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~ 138 (196)
T 1l3k_A 98 ---------------------P--------GAHLTVKKIFVGGI--KEDTE--------EHHLRDYFEQYGKIEVIEIMT 138 (196)
T ss_dssp ----------------------------------CCSEEEEECC--TTTCC--------HHHHHHHHTTTSCEEEEEEEE
T ss_pred ---------------------c--------ccCCCcceEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEee
Confidence 0 00113459999999 77777 899999999999999998865
Q ss_pred C-----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhc
Q 006608 589 D-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 632 (639)
Q Consensus 589 ~-----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~ 632 (639)
+ ++|+|||+|.+.++|.+|+.. +|..|+|+.|.|.|+.+....
T Consensus 139 ~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 4 368999999999999999986 899999999999999877644
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=5.8e-27 Score=223.45 Aligned_cols=176 Identities=17% Similarity=0.247 Sum_probs=141.0
Q ss_pred ccccceeeccc-cccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 247 DQRTVFAYQIC-LKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp-~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
+.++|||+||| +.+|+++|+++|.+||.|..|.|+.+ .+|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 79999999999999999999999864 47999999999999999997 9999999999999987
Q ss_pred hhhhhhhccccccC----------CC-CCC-------CCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCe--EEEEe
Q 006608 325 EAEKNLVQSNSSIA----------GA-SGG-------GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTV--ELVQL 384 (639)
Q Consensus 325 ~~~~~~~~~~~~~~----------~~-~~~-------~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i--~~v~i 384 (639)
.............. .. ... .......+..+|||+|||+.+++++|+++|++||.| ..|.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 54322110000000 00 000 000112457899999999999999999999999998 89988
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe----EEEEEee
Q 006608 385 PLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR----AIKVSAV 428 (639)
Q Consensus 385 ~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~----~i~v~~~ 428 (639)
+.+. +..+|+|||+|.+.++|.+||..|||..|.|. ++.|.++
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 44569999999999999999999999999876 5666664
No 23
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=4.7e-26 Score=222.17 Aligned_cols=194 Identities=21% Similarity=0.265 Sum_probs=147.9
Q ss_pred CCCceEEEcCCCC-cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||. .+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 5578999999999 99999999999999999999999874 679999999999999999999999999999999998
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006608 429 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 508 (639)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (639)
........... ... ... . ..+.. .....+..
T Consensus 108 ~~~~~~~~~~~-------~~~-~~~-------------~----------~~~~~--~~~~~~~~---------------- 138 (229)
T 2adc_A 108 KHQNVQLPREG-------QED-QGL-------------T----------KDYGN--SPLHRFKK---------------- 138 (229)
T ss_dssp SCCCCCCCCSS-------SST-TTT-------------E----------EECTT--CSSCCCCS----------------
T ss_pred cCccccCcccc-------ccc-ccc-------------c----------ccccc--CcccccCC----------------
Confidence 76542111000 000 000 0 00000 00000000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcC-cEEEEEEe
Q 006608 509 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVE 587 (639)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G-~V~~v~v~ 587 (639)
+ ..........++.+|||.|| |..++ +++|+++|+.|| .|..|.|.
T Consensus 139 ---------------------~--~~~~~~~~~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 139 ---------------------P--GSKNFQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp ---------------------T--TSGGGTTCCCSCSEEEEECC--CTTCC--------HHHHHHHHHTTSCCEEEEEEC
T ss_pred ---------------------c--cccccccCCCCCCEEEEeCC--CccCC--------HHHHHHHHHHcCCCeeEEEEE
Confidence 0 00001112346789999999 76666 899999999999 99999996
Q ss_pred cCCCccEEEEecchHHHHHHHHHhcCcccC-CeEEEEEEcCch
Q 006608 588 KDSAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMVPQ 629 (639)
Q Consensus 588 ~~~~g~afV~F~s~e~A~~A~~~lng~~~~-g~~i~v~~~~~~ 629 (639)
...+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+.
T Consensus 186 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 667899999999999999999999999999 999999998764
No 24
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.7e-26 Score=225.25 Aligned_cols=179 Identities=16% Similarity=0.266 Sum_probs=145.9
Q ss_pred cccccccceeecccc-ccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 244 PERDQRTVFAYQICL-KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
+..+.++|||+|||+ .+|+++|+++|..||.|..|.|+.++ +|||||+|.+.++|.+||+ |++..|.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999999764 7899999999999999997 9999999999999
Q ss_pred ccchhhhhhhccccc----------------cCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEe
Q 006608 322 KPSEAEKNLVQSNSS----------------IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQL 384 (639)
Q Consensus 322 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i 384 (639)
.++............ ..............+..+|||+|||..+++++|+++|.+|| .|..|.|
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 887643211100000 00000000011234578999999999999999999999999 9999999
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec-CeEEEEEeeccC
Q 006608 385 PLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVTDQ 431 (639)
Q Consensus 385 ~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~-g~~i~v~~~~~~ 431 (639)
+.. .+|+|||+|.+.++|.+|+..|+|..|+ |+.|.|.|+...
T Consensus 185 ~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 653 2679999999999999999999999999 999999998754
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=5e-26 Score=229.71 Aligned_cols=178 Identities=20% Similarity=0.316 Sum_probs=145.0
Q ss_pred ccccccceeeccccccCHhHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCcee
Q 006608 245 ERDQRTVFAYQICLKADERDVY----EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 319 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l 319 (639)
..+.++|||+|||+++|+++|+ ++|..||.|..|.|+. ++.++|||||+|.+.++|.+||+ |+|..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999966 8999999999999886 57899999999999999999995 99999999999
Q ss_pred eeccchhhhhhhcccc---------------------------------cc-CCCC------------------------
Q 006608 320 MVKPSEAEKNLVQSNS---------------------------------SI-AGAS------------------------ 341 (639)
Q Consensus 320 ~v~~~~~~~~~~~~~~---------------------------------~~-~~~~------------------------ 341 (639)
.|.++........... .. ....
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9987754331000000 00 0000
Q ss_pred --------------C--------------------CCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC
Q 006608 342 --------------G--------------------GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 387 (639)
Q Consensus 342 --------------~--------------------~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~ 387 (639)
. ........+.++|||+|||..+++++|+++|.+||.|..|.|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 0 000012335688999999999999999999999999999999865
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHcCCceec-CeEEEEEeec
Q 006608 388 ETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVT 429 (639)
Q Consensus 388 ~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~-g~~i~v~~~~ 429 (639)
. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 243 ~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3 479999999999999999999999999 9999999975
No 26
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.7e-26 Score=234.31 Aligned_cols=171 Identities=19% Similarity=0.306 Sum_probs=145.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
..++|||+|||+.+|+++|.++|..|| .|..|.|+.+.. |.++|||||+|.+.++|.+||. |++..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998877 7899999999999999999998 9999999999999887
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCc-CCHHHHHHHhccCCCeEEEEeccCCC--CCcceEEEEEec
Q 006608 325 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDET--GHCKGFGFVQFA 401 (639)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~i~~v~i~~~~~--~~~~g~afVef~ 401 (639)
.+....... .....+..+|||+|||.. +++++|+++|.+||.|..|.|+.+.. |.++|||||+|.
T Consensus 195 ~~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 195 NPLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CCC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 654332211 112345789999999999 99999999999999999999999865 999999999999
Q ss_pred CHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 402 RLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 402 ~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
+.++|.+|+ .|||..|+|+.|.|.|+..+
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999 99999999999999998765
No 27
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=6.7e-26 Score=216.14 Aligned_cols=192 Identities=20% Similarity=0.254 Sum_probs=146.7
Q ss_pred CceEEEcCCCC-cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~-~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||. .+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57999999999 99999999999999999999998864 67999999999999999999999999999999999876
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
......... ... ......++.... ..+.
T Consensus 79 ~~~~~~~~~-------~~~------------------------~~~~~~~~~~~~--~r~~------------------- 106 (198)
T 1qm9_A 79 QNVQLPREG-------QED------------------------QGLTKDYGNSPL--HRFK------------------- 106 (198)
T ss_dssp CSCCCSSSS-------SSS------------------------SSCEEESSCCCT--TSSS-------------------
T ss_pred CCcCCCCcC-------Ccc------------------------ccccccccCCch--hhcc-------------------
Confidence 542111000 000 000000000000 0000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcC-cEEEEEEecC
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVEKD 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G-~V~~v~v~~~ 589 (639)
.+. .........++.+|+|.|| |..++ +++|+++|++|| .|..|.|...
T Consensus 107 ------------------~~~--~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 107 ------------------KPG--SKNFQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp ------------------SCC--CCCCSCCCCCCCEEEECCC--CTTCC--------HHHHHHHHHHTTSCCCEEEESST
T ss_pred ------------------Ccc--ccccccCCCCccEEEEeCC--CCCCC--------HHHHHHHHHHcCCCceEEEEEeC
Confidence 000 0001122346789999999 66666 899999999999 9999999776
Q ss_pred CCccEEEEecchHHHHHHHHHhcCcccC-CeEEEEEEcCch
Q 006608 590 SAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMVPQ 629 (639)
Q Consensus 590 ~~g~afV~F~s~e~A~~A~~~lng~~~~-g~~i~v~~~~~~ 629 (639)
.+|+|||+|.+.++|.+|+..|||..|+ |++|.|.|+.+.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 7999999999999999999999999999 999999998764
No 28
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=6.9e-26 Score=211.41 Aligned_cols=160 Identities=23% Similarity=0.361 Sum_probs=136.3
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CC--CcceEEEEEecCHHHHHHHHHHcCCceec---CeEEEE
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TG--HCKGFGFVQFARLEDARNALNLNGQLEIV---GRAIKV 425 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~--~~~g~afVef~~~~~A~~A~~~l~g~~i~---g~~i~v 425 (639)
.++|||+|||..+++++|+++|.+||.|..|.|+.+. ++ .++|||||+|.+.++|.+|+..|+|..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5799999999999999999999999999999999885 43 78999999999999999999999998765 566666
Q ss_pred EeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccccccccc
Q 006608 426 SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVS 505 (639)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (639)
.++.....
T Consensus 83 ~~~~~~~~------------------------------------------------------------------------ 90 (175)
T 3nmr_A 83 KPADSEKN------------------------------------------------------------------------ 90 (175)
T ss_dssp EECGGGCC------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 66443220
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEE
Q 006608 506 TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 585 (639)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~ 585 (639)
......+|||.|| |..++ +++|+++|++||.|..|.
T Consensus 91 ----------------------------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~ 126 (175)
T 3nmr_A 91 ----------------------------------NAVEDRKLFIGMI--SKKCT--------ENDIRVMFSSFGQIEECR 126 (175)
T ss_dssp ----------------------------------SCGGGSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEE
T ss_pred ----------------------------------ccCCCCeEEEcCC--CCcCC--------HHHHHHHHHhCCCEEEEE
Confidence 0113458999999 77666 899999999999999999
Q ss_pred EecC----CCccEEEEecchHHHHHHHHHhcCcccC---CeEEEEEEcC
Q 006608 586 VEKD----SAGFVYLRFENTQSAFAAQRALHGRWFA---GKMITATFMV 627 (639)
Q Consensus 586 v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~~---g~~i~v~~~~ 627 (639)
++.+ ++|+|||+|.+.++|.+|++.|||..+. |++|.|.||.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 127 ILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 8655 3689999999999999999999998776 4999999984
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=3.1e-26 Score=218.47 Aligned_cols=175 Identities=16% Similarity=0.273 Sum_probs=143.8
Q ss_pred cccceeecccc-ccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 248 QRTVFAYQICL-KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 248 ~~~l~v~nLp~-~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
.++|||+|||+ .+|+++|+++|..||.|..|.|+.++ +|||||+|.+.++|.+||. |++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999998764 7899999999999999997 99999999999998775
Q ss_pred hhhhhhccccc----------------cCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccCC
Q 006608 326 AEKNLVQSNSS----------------IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDE 388 (639)
Q Consensus 326 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~~ 388 (639)
........... ..............+..+|||+|||..+++++|+++|.+|| .|..|.|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 43211100000 00000000111235589999999999999999999999999 9999999664
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHcCCceec-CeEEEEEeeccC
Q 006608 389 TGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVTDQ 431 (639)
Q Consensus 389 ~~~~~g~afVef~~~~~A~~A~~~l~g~~i~-g~~i~v~~~~~~ 431 (639)
.+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.|+.+.
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2679999999999999999999999999 999999998754
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=2.2e-26 Score=214.86 Aligned_cols=165 Identities=21% Similarity=0.296 Sum_probs=139.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....++|||+|||..+++++|+++|..||.|..+.+....++.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 456799999999999999999999999998765333333577889999999999999999995 9999999999999997
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006608 429 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 508 (639)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (639)
......
T Consensus 89 ~~~~~~-------------------------------------------------------------------------- 94 (175)
T 1fje_B 89 KGRDSK-------------------------------------------------------------------------- 94 (175)
T ss_dssp CCSSCS--------------------------------------------------------------------------
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 543210
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec
Q 006608 509 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 588 (639)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~ 588 (639)
...+..+|||.|| |..++ +++|.++|+.||.|..+....
T Consensus 95 -------------------------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~g~v~~~~~~~ 133 (175)
T 1fje_B 95 -------------------------------KVRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDG 133 (175)
T ss_dssp -------------------------------TTGGGGEEEEESC--CSSCC--------HHHHHHHCTTCSEEEEECSSS
T ss_pred -------------------------------ccccCCEEEEeCC--CCCCC--------HHHHHHHHHhcCeEEEecCCC
Confidence 0114569999999 77776 899999999999998882234
Q ss_pred CCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 589 DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 589 ~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
.++|+|||+|.+.++|.+|+..|||..|+|+.|.|.|+.++
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 57899999999999999999999999999999999999764
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=2.9e-26 Score=212.36 Aligned_cols=158 Identities=20% Similarity=0.373 Sum_probs=138.9
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+.. +..|+|+.|.|.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 689999999999999999999999999999999998 5899999999999999999999984 5689999998887542
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006608 431 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 510 (639)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (639)
...
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (167)
T 2cjk_A 81 RDE----------------------------------------------------------------------------- 83 (167)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-
Q 006608 511 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 589 (639)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~- 589 (639)
..++.+|||.|| |..++ .++|.++|+.||.|..|.|..+
T Consensus 84 ------------------------------~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 84 ------------------------------QDKTGKIFVGGI--GPDVR--------PKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp ------------------------------HHHCEEEEEEEE--CTTCC--------HHHHHHHHHTTSCCSEEECCCSS
T ss_pred ------------------------------ccCCCeEEECCC--CCCCC--------HHHHHHHHHhCccEEEEEEEEcC
Confidence 002348999999 76766 8999999999999999998543
Q ss_pred ----CCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 590 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 590 ----~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
++|+|||+|.+.++|.+|++ |+|..|+|+.|.|.|+.++
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 46899999999999999998 8999999999999999875
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=9.3e-26 Score=224.58 Aligned_cols=157 Identities=26% Similarity=0.392 Sum_probs=142.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
....++|||+|||+++|+++|.++|..||.|..|.|. .++|||||+|.+.++|.+||. ++|..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 3466899999999999999999999999999999996 357999999999999999997 999999999999987
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCH
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 403 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~ 403 (639)
+. +..+|||+|||..+++++|.++|..||.|..|.|+.+.+|.++|||||+|.+.
T Consensus 93 a~-------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 93 AT-------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAK 147 (261)
T ss_dssp CC-------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSH
T ss_pred cc-------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCH
Confidence 63 25689999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHc-CCceec---CeEEEEEeeccCC
Q 006608 404 EDARNALNLN-GQLEIV---GRAIKVSAVTDQS 432 (639)
Q Consensus 404 ~~A~~A~~~l-~g~~i~---g~~i~v~~~~~~~ 432 (639)
++|.+|+..| ++..+. +++|.|.++....
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999 455554 8999999987553
No 33
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=5.1e-25 Score=210.00 Aligned_cols=192 Identities=18% Similarity=0.207 Sum_probs=138.1
Q ss_pred CCceEEEcCCC-CcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLH-FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp-~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
+.++|||+||| ..+++++|.++|++||.|..|.|+.+ .+|||||+|.+.++|..|++.|||..|.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 89999999999999999999999875 36899999999999999999999999999999999986
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
...... .. . ..... +... . ..+.......+..+..
T Consensus 79 ~~~~~p--~~--~--~~~~~-~~~~------------------------------~--~~~~~~~~~r~~~~~~------ 113 (205)
T 3tyt_A 79 QPAIMP--GQ--S--YGLED-GSCS------------------------------Y--KDFSESRNNRFSTPEQ------ 113 (205)
T ss_dssp CSCCCC--CS--C--CBCTT-SCBS------------------------------E--EECTTCTTCSCSSHHH------
T ss_pred CCccCC--Cc--c--ccccc-CCcc------------------------------c--cccCCCccccccCccc------
Confidence 543200 00 0 00000 0000 0 0000000000000000
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcE--EEEEEe
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKL--KHIFVE 587 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V--~~v~v~ 587 (639)
........++.+|||.|| |.+++ +++|+++|++||.| ..|.+.
T Consensus 114 -------------------------~~~~~~~~p~~~l~v~NL--p~~~t--------~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 114 -------------------------AAKNRIQHPSNVLHFFNA--PLEVT--------EENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp -------------------------HTTSCCCCCCSEEEEEEE--CTTCC--------HHHHHHHHHHHTCCCCSEEEEC
T ss_pred -------------------------ccccccCCCcceEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEE
Confidence 000011246779999999 77777 89999999999999 888885
Q ss_pred cC---CCccEEEEecchHHHHHHHHHhcCcccCCe----EEEEEEc
Q 006608 588 KD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK----MITATFM 626 (639)
Q Consensus 588 ~~---~~g~afV~F~s~e~A~~A~~~lng~~~~g~----~i~v~~~ 626 (639)
.. .+|+|||+|.+.++|.+|+..|||..|.|. ++.|-|+
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 43 358999999999999999999999999888 4555553
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=5.9e-25 Score=209.56 Aligned_cols=177 Identities=24% Similarity=0.410 Sum_probs=139.3
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccC----C-------CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPF----G-------TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~----G-------~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
..++|||+|||..+++++|+++|..| | .|..+.+.. ++|||||+|.+.++|.+|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 36899999999999999999999999 5 666666643 4889999999999999999 89999999
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccc
Q 006608 420 GRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLG 499 (639)
Q Consensus 420 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (639)
|+.|.|.++........... . + ...
T Consensus 77 g~~i~v~~~~~~~~~~~~~~-------------------------------~-----------~-----~~~-------- 101 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSE-------------------------------N-----------P-----SVY-------- 101 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSS-------------------------------C-----------S-----SCC--------
T ss_pred CceEEEeCCCCCCCCCCCcC-------------------------------C-----------C-----cCC--------
Confidence 99999998765432100000 0 0 000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcC
Q 006608 500 AASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG 579 (639)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G 579 (639)
.+.. .......+..+|||.|| |..++ .++|.++|++||
T Consensus 102 -----------------------------~~~~---~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G 139 (198)
T 2yh0_A 102 -----------------------------VPGV---VSTVVPDSAHKLFIGGL--PNYLN--------DDQVKELLTSFG 139 (198)
T ss_dssp -----------------------------CTTS---SCCCSSCCCCEEEEECC--CTTCC--------HHHHHHHHHTBS
T ss_pred -----------------------------CCCC---ccCCCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHHcC
Confidence 0000 00011235679999999 76666 899999999999
Q ss_pred cEEEEEEecCC-----CccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchh
Q 006608 580 KLKHIFVEKDS-----AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 630 (639)
Q Consensus 580 ~V~~v~v~~~~-----~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~ 630 (639)
.|..|.+..+. +|+|||+|.+.++|.+|++.|||..|+|+.|.|.|+.+..
T Consensus 140 ~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 140 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999986553 7899999999999999999999999999999999997753
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=3.4e-25 Score=206.12 Aligned_cols=154 Identities=26% Similarity=0.432 Sum_probs=134.4
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccC----C-------CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPF----G-------TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~----G-------~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
+.++|||+|||..+++++|+++|++| | .|..+.+... +|||||+|.+.++|.+|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 36899999999999999999999999 6 7777777543 789999999999999999 89999999
Q ss_pred CeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCccccc
Q 006608 420 GRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLG 499 (639)
Q Consensus 420 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (639)
|+.|.|.++.....
T Consensus 77 g~~i~v~~~~~~~~------------------------------------------------------------------ 90 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------------------------------------------------------ 90 (172)
T ss_dssp TEECEEECCSSCCC------------------------------------------------------------------
T ss_pred CceeeecCCcccCC------------------------------------------------------------------
Confidence 99999987543220
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcC
Q 006608 500 AASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG 579 (639)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G 579 (639)
.....+|+|.|| |..++ .++|.++|++||
T Consensus 91 -----------------------------------------~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G 119 (172)
T 2g4b_A 91 -----------------------------------------LPGAHKLFIGGL--PNYLN--------DDQVKELLTSFG 119 (172)
T ss_dssp -----------------------------------------CTTTTCEEEECC--CTTCC--------HHHHHHHHHTTS
T ss_pred -----------------------------------------CCCCCEEEEEcC--CCcCC--------HHHHHHHHHhcC
Confidence 002448999999 76666 899999999999
Q ss_pred cEEEEEEecCC-----CccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcC
Q 006608 580 KLKHIFVEKDS-----AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMV 627 (639)
Q Consensus 580 ~V~~v~v~~~~-----~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~ 627 (639)
.|..|.+..+. +|+|||+|.+.++|.+|++.|||..|+|+.|.|.||.
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999986553 6899999999999999999999999999999999974
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=6.6e-24 Score=211.19 Aligned_cols=153 Identities=24% Similarity=0.357 Sum_probs=135.9
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|||+|||..+++++|.++|..||.|..|.|..+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45689999999999999999999999999999999754 7899999999999999999999999999999999853
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhhcCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006608 430 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 509 (639)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (639)
.
T Consensus 95 ~------------------------------------------------------------------------------- 95 (261)
T 3sde_A 95 H------------------------------------------------------------------------------- 95 (261)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC
Q 006608 510 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 589 (639)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~ 589 (639)
..+|||.|| |..++ .++|.++|+.||.|..|.|+.+
T Consensus 96 ----------------------------------~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 96 ----------------------------------GAALTVKNL--SPVVS--------NELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ----------------------------------SSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEE
T ss_pred ----------------------------------CCcccccCC--CCCCC--------HHHHHHHHHhcCCeEEEEeeeC
Confidence 228999999 77666 8999999999999999988554
Q ss_pred ----CCccEEEEecchHHHHHHHHHhc-CcccC---CeEEEEEEcCchh
Q 006608 590 ----SAGFVYLRFENTQSAFAAQRALH-GRWFA---GKMITATFMVPQT 630 (639)
Q Consensus 590 ----~~g~afV~F~s~e~A~~A~~~ln-g~~~~---g~~i~v~~~~~~~ 630 (639)
++|+|||+|.+.++|.+|+..|| |..+. |++|.|.++....
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 46899999999999999999995 44544 9999999988654
No 37
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.84 E-value=3.4e-21 Score=163.72 Aligned_cols=97 Identities=47% Similarity=0.866 Sum_probs=92.9
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-CCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-SAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
.++++|+|.||++|.++.+++||.+|++||+++|++||.|..|.|+.+ ++|+|||+|.+.++|++|+..|||+.|+|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 478899999999999999999999999999999999999999999766 4899999999999999999999999999999
Q ss_pred EEEEEcCchhhcccCCCC
Q 006608 621 ITATFMVPQTYEAKFPDS 638 (639)
Q Consensus 621 i~v~~~~~~~~~~~~~~~ 638 (639)
|.|.|+++..|..+||++
T Consensus 85 i~v~~~~~~~y~~~fp~a 102 (114)
T 3s6e_A 85 ITAAYVPLPTYHNLFPDS 102 (114)
T ss_dssp CEEEEECHHHHHHHCGGG
T ss_pred EEEEEEcHHHHHHhCccc
Confidence 999999999999999986
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=1.5e-19 Score=165.22 Aligned_cols=149 Identities=23% Similarity=0.310 Sum_probs=112.5
Q ss_pred EEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceE
Q 006608 277 DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRL 355 (639)
Q Consensus 277 ~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 355 (639)
.+.|+.+.. .++|||||+|.+.++|++|++ +++.......+.+............ ..............+|
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG------SHHHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC------CCCSSCCCCCCBCCEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc------ccccccccCCCCCCEE
Confidence 466777765 589999999999999999995 5543332222222211110000000 0011112223457899
Q ss_pred EEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 356 YVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 356 ~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.....
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999999998 5899999999999999999999999999999999999999987653
No 39
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.81 E-value=8.2e-20 Score=153.50 Aligned_cols=94 Identities=32% Similarity=0.554 Sum_probs=88.4
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-------CCccEEEEecchHHHHHHHHHhcC
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-------SAGFVYLRFENTQSAFAAQRALHG 613 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-------~~g~afV~F~s~e~A~~A~~~lng 613 (639)
+.|+++|+|.||++|.++.++++|.++.+||+++|++||.|.+|.|+.+ ++|+|||+|+++++|++|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4588999999999999999999999999999999999999999999653 579999999999999999999999
Q ss_pred cccCCeEEEEEEcCchhhccc
Q 006608 614 RWFAGKMITATFMVPQTYEAK 634 (639)
Q Consensus 614 ~~~~g~~i~v~~~~~~~~~~~ 634 (639)
+.|+|++|.|.|+++..|.+.
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp CEETTEECEEEEECHHHHHTT
T ss_pred CEeCCCEEEEEEeCHHHHhhc
Confidence 999999999999999999764
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=4.7e-19 Score=152.35 Aligned_cols=108 Identities=23% Similarity=0.349 Sum_probs=72.6
Q ss_pred cccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
..+|||+|||+.+|+++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|.+||+ |++..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46799999999999999999999999999999999864 489999999999999999996 999999999999988754
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHH
Q 006608 327 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQ 368 (639)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~ 368 (639)
........ ........+|||+|||+.+|++.
T Consensus 83 ~~~~~~~~-----------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL-----------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC---------------------------------------
T ss_pred cccccccc-----------ccccCCCCceEeCCCCCCccccc
Confidence 33211111 11123356799999999988763
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=2.5e-18 Score=155.53 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=109.2
Q ss_pred CcceEEEEEecCHHHHHHHHHHc-CCceecCeEEEEEeeccCCcccCCCCCCCCCCCCCCCCCcccchhhHHHHHHHhhh
Q 006608 391 HCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 469 (639)
Q Consensus 391 ~~~g~afVef~~~~~A~~A~~~l-~g~~i~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (639)
..+|+++|+|.+.++|.+|+..+ ||..|+| .|.+.++...........
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~------------------------------ 59 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH------------------------------ 59 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS------------------------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc------------------------------
Confidence 45899999999999999999999 9999999 998887653321100000
Q ss_pred cCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCcceEEe
Q 006608 470 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLL 549 (639)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 549 (639)
. ...........+.++|||
T Consensus 60 -~------------------------------------------------------------~~~~~~~~~~~~~~~l~V 78 (150)
T 2i2y_A 60 -H------------------------------------------------------------HHHHMHRDSCPLDCKVYV 78 (150)
T ss_dssp -S------------------------------------------------------------CCCCSCSSSSTTSCEEEE
T ss_pred -c------------------------------------------------------------ccccccccCCCCCCEEEE
Confidence 0 000000011235679999
Q ss_pred cccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCch
Q 006608 550 KNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 629 (639)
Q Consensus 550 ~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~ 629 (639)
+|| |..++ +++|+++|+.||.|..|.|+.+++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.+.
T Consensus 79 ~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 79 GNL--GNNGN--------KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp ESC--CSCCS--------CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred eCC--CCCCC--------HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999 77766 79999999999999999998888999999999999999999999999999999999998764
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=4.5e-18 Score=153.89 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=112.0
Q ss_pred CCcccEEEEEEcccccHHHHHH-h-cCCccCCceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcC
Q 006608 287 RRSKGVGYVEFYDVMSVPMAIA-L-SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM 364 (639)
Q Consensus 287 ~~~~g~afV~f~~~~~a~~al~-~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 364 (639)
..-+|+++|+|.+.++|++|++ + ++..+.| .|.+.++........... ............+.++|||+|||+.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---HHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---SCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---cccccccccCCCCCCEEEEeCCCCCC
Confidence 4578999999999999999996 8 9999999 999987654222111100 01111223334567899999999999
Q ss_pred CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 365 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 365 ~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
++++|+++|..||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999876 5789999999999999999999999999999999998764
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=2.5e-17 Score=150.49 Aligned_cols=78 Identities=19% Similarity=0.422 Sum_probs=71.0
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-----CCccEEEEecchHHHHHHHHHhcCcccC
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFA 617 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~lng~~~~ 617 (639)
+..+|||.|| |..++ +++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|.+|+..|||..|+
T Consensus 69 ~~~~l~v~nl--~~~~~--------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 69 GMTSLKVDNL--TYRTS--------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp BCCEEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5669999999 77777 8999999999999999998654 5799999999999999999999999999
Q ss_pred CeEEEEEEcCchh
Q 006608 618 GKMITATFMVPQT 630 (639)
Q Consensus 618 g~~i~v~~~~~~~ 630 (639)
|+.|.|.|+.+..
T Consensus 139 g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 139 GRELRVQMARYGR 151 (158)
T ss_dssp SSEEEEEEECCSS
T ss_pred CeEEEEEECCCCC
Confidence 9999999998753
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=7.2e-18 Score=140.42 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=76.0
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999996 99999999999999875
Q ss_pred h
Q 006608 326 A 326 (639)
Q Consensus 326 ~ 326 (639)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 45
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.9e-17 Score=175.22 Aligned_cols=167 Identities=15% Similarity=0.313 Sum_probs=112.0
Q ss_pred HHHHHHhhcCCeeEEEEee----cC-CCCCcccEE--EEEEcccccHHHHHH-hcCCccCCceeeeccchhhhhhhcccc
Q 006608 264 DVYEFFSRAGKVRDVRLIM----DR-NSRRSKGVG--YVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNS 335 (639)
Q Consensus 264 ~l~~~f~~~G~i~~~~i~~----d~-~~~~~~g~a--fV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~~~~~ 335 (639)
.|..+|.++|+|..|..+. +. .+....|++ |+.|.....+..++. ++...+.+.....+............
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~- 86 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETEL- 86 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3789999999998874332 22 222334444 888887766655553 22222222111100000000000000
Q ss_pred ccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcC
Q 006608 336 SIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG 414 (639)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~ 414 (639)
.. ............+.++|||+|||+.|++++|.++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..||
T Consensus 87 ~~-~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 87 KM-WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred hh-cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 00 0001111122355789999999999999999999999999999999988 588999999999999999999999999
Q ss_pred CceecCeEEEEEeeccCC
Q 006608 415 QLEIVGRAIKVSAVTDQS 432 (639)
Q Consensus 415 g~~i~g~~i~v~~~~~~~ 432 (639)
|..|+|+.|.|.|+....
T Consensus 166 g~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 166 GKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCEECCEEEEEEEeCCCC
Confidence 999999999999998654
No 46
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.69 E-value=3.1e-17 Score=140.32 Aligned_cols=87 Identities=29% Similarity=0.615 Sum_probs=77.6
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC---------CCccEEEEecchHHHHHHHHHhcC
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---------SAGFVYLRFENTQSAFAAQRALHG 613 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~---------~~g~afV~F~s~e~A~~A~~~lng 613 (639)
++++|+|.||++|.++. .++++||+++|++||.|..|.|+.+ ++|+|||+|.++++|.+|+..|||
T Consensus 19 ps~vl~L~Nm~~~~el~-----ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEESCSCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 78899999998886543 4678999999999999999998553 248999999999999999999999
Q ss_pred cccCCeEEEEEEcCchhhccc
Q 006608 614 RWFAGKMITATFMVPQTYEAK 634 (639)
Q Consensus 614 ~~~~g~~i~v~~~~~~~~~~~ 634 (639)
+.|+|++|.|.|+++..|.+.
T Consensus 94 r~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp CEETTEECEEEEECHHHHHTT
T ss_pred CEECCcEEEEEEcChHhcccc
Confidence 999999999999999999763
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=133.69 Aligned_cols=79 Identities=38% Similarity=0.576 Sum_probs=75.3
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 468999999999999999999999999999999988 5899999999999999999999999999999999999999864
No 48
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=7.4e-17 Score=135.29 Aligned_cols=89 Identities=28% Similarity=0.534 Sum_probs=77.6
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC------CCccEEEEecchHHHHHHHHHhcCc
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD------SAGFVYLRFENTQSAFAAQRALHGR 614 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~------~~g~afV~F~s~e~A~~A~~~lng~ 614 (639)
..++++|+|.||++|.++. .+++++|+++|++||.|..|.|+.+ ++|+|||+|.+.++|++|++.|||+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~-----dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVD-----EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp GSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCChHHhh-----HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 3578899999999886553 2458999999999999999998642 5799999999999999999999999
Q ss_pred ccCCeEEEEEEcCchhhccc
Q 006608 615 WFAGKMITATFMVPQTYEAK 634 (639)
Q Consensus 615 ~~~g~~i~v~~~~~~~~~~~ 634 (639)
.|+|++|.|.|+++..|...
T Consensus 80 ~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 80 YFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp EETTEECEEEECCHHHHHTT
T ss_pred EECCcEEEEEEcCHHHhhhh
Confidence 99999999999999998764
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=6.8e-17 Score=137.14 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=77.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999999999999997 9999999999999887
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 5433
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=136.48 Aligned_cols=80 Identities=25% Similarity=0.381 Sum_probs=74.1
Q ss_pred cccceeeccccccCHhHHHHHHhhcC-CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-h-cCCccCCceeeeccc
Q 006608 248 QRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L-SGQPLLGQPVMVKPS 324 (639)
Q Consensus 248 ~~~l~v~nLp~~~te~~l~~~f~~~G-~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~-~~~~~~g~~l~v~~~ 324 (639)
+++|||+|||+++|+++|+++|++|| .|.+|.|++++.+|.++|||||+|.+.++|.+||+ + ++..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999997 5 456799999999988
Q ss_pred hhh
Q 006608 325 EAE 327 (639)
Q Consensus 325 ~~~ 327 (639)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 51
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=132.13 Aligned_cols=84 Identities=27% Similarity=0.484 Sum_probs=78.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||++++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 52
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=9.4e-17 Score=131.43 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=71.5
Q ss_pred ccceeeccccccCHhHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G--~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
.+|||+|||+++|+++|+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999996 99999999999999887
Q ss_pred hhhh
Q 006608 326 AEKN 329 (639)
Q Consensus 326 ~~~~ 329 (639)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=8.1e-17 Score=132.37 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=73.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCC--eeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCC----ccCCc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGK--VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ----PLLGQ 317 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~--i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~----~~~g~ 317 (639)
...-.+|||+|||+.+|+++|+++|++||. |.+|.|++|+.+|.++|||||+|.+.++|.+||+ |++. .|.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345579999999999999999999999995 6799999999999999999999999999999997 8886 48999
Q ss_pred eeeeccch
Q 006608 318 PVMVKPSE 325 (639)
Q Consensus 318 ~l~v~~~~ 325 (639)
+|.|.++.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99998874
No 54
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2e-16 Score=132.37 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=76.7
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
....++|||+|||+++|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34568999999999999999999999999999999999988 99999999999999999999999999999999999876
Q ss_pred hhh
Q 006608 325 EAE 327 (639)
Q Consensus 325 ~~~ 327 (639)
...
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 55
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=2.3e-16 Score=128.29 Aligned_cols=81 Identities=27% Similarity=0.478 Sum_probs=75.9
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||++++..|.|+.|.|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999889999999999975
Q ss_pred c
Q 006608 324 S 324 (639)
Q Consensus 324 ~ 324 (639)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 56
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=4e-16 Score=123.05 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=74.5
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 622 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~ 622 (639)
.+.-|+|+|| +..++ +++|+++|.+||.|..+++.. ++|||||+|.+.++|.+|++.|||+.|.|++|.
T Consensus 6 ~~~wL~VgNL--~~~~t--------e~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNL--TAQID--------GPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECC--CTTCC--------CHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCC--CccCC--------HHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 4568999999 77777 899999999999999999965 799999999999999999999999999999999
Q ss_pred EEEcCchhhcccC
Q 006608 623 ATFMVPQTYEAKF 635 (639)
Q Consensus 623 v~~~~~~~~~~~~ 635 (639)
|.+|++...+..+
T Consensus 75 V~~A~e~~~~~~~ 87 (89)
T 2wbr_A 75 AESPSENEVQSIM 87 (89)
T ss_dssp EECCCHHHHHHHH
T ss_pred EEECCHHHHHHHh
Confidence 9999987776554
No 57
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=134.26 Aligned_cols=88 Identities=59% Similarity=0.948 Sum_probs=81.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
.....++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||.|++..|.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhh
Q 006608 324 SEAEKNLV 331 (639)
Q Consensus 324 ~~~~~~~~ 331 (639)
+.+.....
T Consensus 101 a~~~~~~~ 108 (114)
T 2cq4_A 101 SQAEKNRL 108 (114)
T ss_dssp HHHHHHHH
T ss_pred cCCCccCC
Confidence 87665443
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=128.42 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=75.4
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999999887
Q ss_pred hh
Q 006608 325 EA 326 (639)
Q Consensus 325 ~~ 326 (639)
.+
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 59
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=129.72 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=75.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHc-CCceecCeEEEEEee
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIKVSAV 428 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l-~g~~i~g~~i~v~~~ 428 (639)
+.+|||+|||..+++++|+++|++|| .|..|.|+.+ .+|.++|||||+|.+.++|.+||+.| ++..|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999998 68999999999999999999999876 567899999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87653
No 60
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=130.36 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999998 57999999999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6443
No 61
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=130.90 Aligned_cols=85 Identities=24% Similarity=0.394 Sum_probs=78.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999995 999999999999998
Q ss_pred chhhhh
Q 006608 324 SEAEKN 329 (639)
Q Consensus 324 ~~~~~~ 329 (639)
+.+...
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 866544
No 62
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=131.24 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=78.1
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 7653
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.64 E-value=1.8e-16 Score=132.41 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=78.5
Q ss_pred cccccceeecccc------ccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC-c
Q 006608 246 RDQRTVFAYQICL------KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG-Q 317 (639)
Q Consensus 246 ~~~~~l~v~nLp~------~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g-~ 317 (639)
...++|||+|||+ .+++++|.++|.+||.|..|.|+.++.||.++|||||+|.+.++|.+||+ |+|..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999999999999999999999999996 99999999 9
Q ss_pred eeeeccchhhhh
Q 006608 318 PVMVKPSEAEKN 329 (639)
Q Consensus 318 ~l~v~~~~~~~~ 329 (639)
.|.|.++.+...
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999998876543
No 64
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=128.14 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCC--eEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCc----eecCe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGT--VELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQL----EIVGR 421 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~--i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~----~i~g~ 421 (639)
.....+|||+|||+.+++++|+++|++||. |..|.|+++ .+|.++|||||+|.+.++|.+|++.|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 578999998 58999999999999999999999999986 59999
Q ss_pred EEEEEeecc
Q 006608 422 AIKVSAVTD 430 (639)
Q Consensus 422 ~i~v~~~~~ 430 (639)
+|.|.|+..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 65
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=132.51 Aligned_cols=94 Identities=30% Similarity=0.505 Sum_probs=81.7
Q ss_pred CCCcceEEecccCCCCC-CCchhhHhhHHHHHHHHhhhcCcEEEEEEe-cCCCccEEEEecchHHHHHHHHHhcCcccCC
Q 006608 541 GVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAG 618 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~-~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~-~~~~g~afV~F~s~e~A~~A~~~lng~~~~g 618 (639)
..++++|+|.||+.+.+ ..+++||.+++++|+++|++||.|..|.|. ..++|+|||+|.+.++|++|+..|||..|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34788999999988775 346678999999999999999999999773 3478999999999999999999999999999
Q ss_pred eEEEEEEcCchhhccc
Q 006608 619 KMITATFMVPQTYEAK 634 (639)
Q Consensus 619 ~~i~v~~~~~~~~~~~ 634 (639)
++|.|.|+.+......
T Consensus 92 r~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 92 RQITAQAWDGTTDYQS 107 (112)
T ss_dssp EECEEEECCSCCCSSC
T ss_pred cEEEEEEeCCCCCccc
Confidence 9999999988654443
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=132.00 Aligned_cols=84 Identities=26% Similarity=0.413 Sum_probs=78.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+.+|+++|.++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |++..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999997 99999999999998
Q ss_pred cchhh
Q 006608 323 PSEAE 327 (639)
Q Consensus 323 ~~~~~ 327 (639)
++.+.
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 87543
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=124.67 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=78.0
Q ss_pred CCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEE
Q 006608 345 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423 (639)
Q Consensus 345 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i 423 (639)
......+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3344566789999999999999999999999999999999988 578899999999999999999999999999999999
Q ss_pred EEEeec
Q 006608 424 KVSAVT 429 (639)
Q Consensus 424 ~v~~~~ 429 (639)
.|.|++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999973
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=128.61 Aligned_cols=82 Identities=24% Similarity=0.430 Sum_probs=77.4
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.++++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999997 9999999999999887
Q ss_pred hhh
Q 006608 325 EAE 327 (639)
Q Consensus 325 ~~~ 327 (639)
.+.
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 69
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=125.57 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|..||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+.+..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87665
No 70
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=5.6e-15 Score=126.93 Aligned_cols=88 Identities=30% Similarity=0.495 Sum_probs=81.4
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
......++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34466899999999999999999999999999999999988 58999999999999999999999999999999999999
Q ss_pred EeeccCCcc
Q 006608 426 SAVTDQSGL 434 (639)
Q Consensus 426 ~~~~~~~~~ 434 (639)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999877643
No 71
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=4.1e-16 Score=134.12 Aligned_cols=104 Identities=21% Similarity=0.413 Sum_probs=92.1
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|.++|..||.|..|.|+.+ +.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999976 4569999999999999999997 999999999999998
Q ss_pred chhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHHHHhccCCC
Q 006608 324 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGT 378 (639)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~ 378 (639)
+.+.... .+++....+++|.++|++||.
T Consensus 82 a~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8654432 367778899999999999984
No 72
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=1.1e-15 Score=131.32 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=79.5
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred chhhhhh
Q 006608 324 SEAEKNL 330 (639)
Q Consensus 324 ~~~~~~~ 330 (639)
+......
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 8765443
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.7e-16 Score=123.92 Aligned_cols=75 Identities=24% Similarity=0.408 Sum_probs=72.2
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
+|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|++|+++++..+.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999764
No 74
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=129.96 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=78.5
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||..++..|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 44668999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
.+..
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6544
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.63 E-value=6.9e-16 Score=128.76 Aligned_cols=83 Identities=25% Similarity=0.426 Sum_probs=77.4
Q ss_pred CCcccccccceeeccccccCHhHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCC
Q 006608 242 VDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRD--------VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 312 (639)
Q Consensus 242 ~~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--------~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~ 312 (639)
..+....++|||+|||+++|+++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+.++|.+||+ |+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344556789999999999999999999999999999 9999999999999999999999999999997 9999
Q ss_pred ccCCceeeeccc
Q 006608 313 PLLGQPVMVKPS 324 (639)
Q Consensus 313 ~~~g~~l~v~~~ 324 (639)
.|.|+.|.|.++
T Consensus 87 ~~~g~~l~V~~A 98 (99)
T 2la6_A 87 EFSGNPIKVSFA 98 (99)
T ss_dssp BSSSSBCEEEEC
T ss_pred EeCCcEEEEEec
Confidence 999999999875
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=5e-16 Score=128.82 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=77.6
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
+.++|||+|||..+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999996 99999999999999886
Q ss_pred hhhh
Q 006608 326 AEKN 329 (639)
Q Consensus 326 ~~~~ 329 (639)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 5443
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=4.7e-16 Score=125.17 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=74.8
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~ 326 (639)
.+|||+|||+.+++++|+++|.+||.|..+.|+.++.+|.++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 589999999999999999999999999999999999999999999999999999999997 999999999999988754
No 78
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=3.6e-16 Score=138.10 Aligned_cols=122 Identities=28% Similarity=0.408 Sum_probs=80.3
Q ss_pred EEEEEEcccccHHHHHH-hcCCccCCceeeeccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHH
Q 006608 292 VGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR 370 (639)
Q Consensus 292 ~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~ 370 (639)
++|++|.+...+..||+ +++....|.... .+ +...+...+.++|||+|||..+++++|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~-~~-------------------~~~~~~~~~~~~l~V~nLp~~~te~~L~ 65 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM-SY-------------------GRPPPDVEGMTSLKVDNLTYRTSPDTLR 65 (135)
T ss_dssp -----------------------------C-CS-------------------CCSCSSGGGCCCEEEECCCSSCHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCC-Cc-------------------CCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 56777788888888886 777665543211 11 1112223456899999999999999999
Q ss_pred HHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 371 QVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 371 ~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.....
T Consensus 66 ~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 66 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999988 5888999999999999999999999999999999999999987653
No 79
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.2e-16 Score=127.28 Aligned_cols=81 Identities=30% Similarity=0.448 Sum_probs=76.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999999999997 999999999999988
Q ss_pred ch
Q 006608 324 SE 325 (639)
Q Consensus 324 ~~ 325 (639)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=6.8e-16 Score=130.76 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=78.5
Q ss_pred CcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 243 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 243 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ ++|..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred ccchh
Q 006608 322 KPSEA 326 (639)
Q Consensus 322 ~~~~~ 326 (639)
.++.+
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 88754
No 81
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.2e-16 Score=130.59 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=78.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4466899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 1x5u_A 92 ASAHN 96 (105)
T ss_dssp TTTTS
T ss_pred CCCCC
Confidence 76543
No 82
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=4.6e-16 Score=125.87 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=75.3
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 466899999999999999999999999999999999999999999999999999999999995 9999999999999875
No 83
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.6e-15 Score=124.38 Aligned_cols=85 Identities=31% Similarity=0.495 Sum_probs=79.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999984 8899999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 006608 429 TDQSGL 434 (639)
Q Consensus 429 ~~~~~~ 434 (639)
......
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 877643
No 84
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=5.3e-16 Score=126.73 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=76.4
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccchh
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 326 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~~ 326 (639)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+.+++..|.|+.|.|.++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988754
No 85
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-15 Score=123.97 Aligned_cols=84 Identities=31% Similarity=0.484 Sum_probs=77.8
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34466789999999999999999999999999999999988 57889999999999999999999999999999999999
Q ss_pred Eeecc
Q 006608 426 SAVTD 430 (639)
Q Consensus 426 ~~~~~ 430 (639)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99763
No 86
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=7.7e-16 Score=132.34 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=78.3
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+++|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999995 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 76543
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.8e-15 Score=125.25 Aligned_cols=85 Identities=28% Similarity=0.451 Sum_probs=79.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456799999999999999999999999999999999988 5889999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 88
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=6.8e-16 Score=129.84 Aligned_cols=83 Identities=27% Similarity=0.425 Sum_probs=77.6
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
+..+.++|||+|||+.+|+++|+++|.+|| |..|.|+.++.++.++|||||+|.+.++|.+||+|++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 345678999999999999999999999997 9999999999999999999999999999999999999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 7653
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=1.1e-15 Score=133.84 Aligned_cols=83 Identities=30% Similarity=0.433 Sum_probs=78.0
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7653
No 90
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=6.2e-16 Score=131.79 Aligned_cols=85 Identities=25% Similarity=0.360 Sum_probs=78.9
Q ss_pred CcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 243 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 243 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
....+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred ccchhh
Q 006608 322 KPSEAE 327 (639)
Q Consensus 322 ~~~~~~ 327 (639)
.++.+.
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 887543
No 91
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-15 Score=125.32 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|..||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34567899999999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 875543
No 92
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.7e-16 Score=128.13 Aligned_cols=83 Identities=20% Similarity=0.411 Sum_probs=76.8
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999995 99999999999998
Q ss_pred cchhh
Q 006608 323 PSEAE 327 (639)
Q Consensus 323 ~~~~~ 327 (639)
++.+.
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 87543
No 93
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.9e-16 Score=130.79 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=77.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hc------CCccCCc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LS------GQPLLGQ 317 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~------~~~~~g~ 317 (639)
..+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4467899999999999999999999999999999999999999999999999999999999997 88 9999999
Q ss_pred eeeeccchhh
Q 006608 318 PVMVKPSEAE 327 (639)
Q Consensus 318 ~l~v~~~~~~ 327 (639)
.|.|.++.+.
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999987654
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6e-16 Score=130.40 Aligned_cols=84 Identities=27% Similarity=0.426 Sum_probs=77.9
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCC-CCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS-RRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~-~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
+..+.++|||+|||+.+|+++|+++|..|| |..|.|+.++.+ +.++|||||+|.+.++|.+||.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVD 89 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEE
Confidence 345668999999999999999999999999 999999999988 999999999999999999999999999999999999
Q ss_pred cchhhh
Q 006608 323 PSEAEK 328 (639)
Q Consensus 323 ~~~~~~ 328 (639)
++.+..
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 876543
No 95
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=122.11 Aligned_cols=82 Identities=33% Similarity=0.544 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+..+|||+|||..+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34689999999999999999999999999999999988 58899999999999999999999999999999999999998
Q ss_pred ccC
Q 006608 429 TDQ 431 (639)
Q Consensus 429 ~~~ 431 (639)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-16 Score=128.88 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=77.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCee-EEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCce---
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVR-DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP--- 318 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~-~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~--- 318 (639)
...+.++|||+|||+++++++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|++||+ |++..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 99999999999999999999999999999998 9999999999
Q ss_pred -eeeccchh
Q 006608 319 -VMVKPSEA 326 (639)
Q Consensus 319 -l~v~~~~~ 326 (639)
|.|.++.+
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99887654
No 97
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=124.01 Aligned_cols=84 Identities=27% Similarity=0.534 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+. |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999988 578899999999999999999999 999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-16 Score=128.83 Aligned_cols=83 Identities=22% Similarity=0.374 Sum_probs=76.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCC---CCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN---SRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~---~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+.. ++.++|||||+|.+.++|.+||. |++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999887 66899999999999999999997 9999999999999
Q ss_pred ccchhhh
Q 006608 322 KPSEAEK 328 (639)
Q Consensus 322 ~~~~~~~ 328 (639)
.++....
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9876543
No 99
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=125.43 Aligned_cols=85 Identities=36% Similarity=0.596 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 356789999999999999999999999999999999988 6888999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987664
No 100
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.8e-16 Score=129.24 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=77.7
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+++|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999995 999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+...
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 7643
No 101
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=123.61 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=71.1
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcc--cCC
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW--FAG 618 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~--~~g 618 (639)
..|+++|||+|| |..++ +++|.++|++||.|..|.+++ .+|+|||+|++.++|.+|+..|||.. |.|
T Consensus 18 ~~ps~~l~V~NL--p~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 18 TPASPVVHIRGL--IDGVV--------EADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCCSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 457889999999 77777 899999999999999999865 68999999999999999999999986 789
Q ss_pred eEEEEEEcCch
Q 006608 619 KMITATFMVPQ 629 (639)
Q Consensus 619 ~~i~v~~~~~~ 629 (639)
++|.|+|+...
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999998764
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=2.1e-15 Score=121.97 Aligned_cols=80 Identities=39% Similarity=0.655 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999888 68889999999999999999999999999999999999987
Q ss_pred c
Q 006608 429 T 429 (639)
Q Consensus 429 ~ 429 (639)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 103
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=3.2e-15 Score=120.23 Aligned_cols=81 Identities=28% Similarity=0.567 Sum_probs=76.2
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
+.+|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 358999999999999999999999999999999988 6899999999999999999999999999999999999999876
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 104
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=129.25 Aligned_cols=85 Identities=22% Similarity=0.446 Sum_probs=78.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeec-CCCCCcccEEEEEEcccccHHHHHH-h-cCCccCCceee
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMD-RNSRRSKGVGYVEFYDVMSVPMAIA-L-SGQPLLGQPVM 320 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d-~~~~~~~g~afV~f~~~~~a~~al~-~-~~~~~~g~~l~ 320 (639)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|.+||. | ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 7889999999999999999999997 8 89999999999
Q ss_pred eccchhhh
Q 006608 321 VKPSEAEK 328 (639)
Q Consensus 321 v~~~~~~~ 328 (639)
|.++.+..
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99876543
No 105
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.9e-15 Score=125.57 Aligned_cols=87 Identities=29% Similarity=0.442 Sum_probs=79.5
Q ss_pred CCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 346 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 346 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
.....+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 344566899999999999999999999999999999999998 5789999999999999999999999998 89999999
Q ss_pred EEeeccCCc
Q 006608 425 VSAVTDQSG 433 (639)
Q Consensus 425 v~~~~~~~~ 433 (639)
|.++.....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 106
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=126.41 Aligned_cols=87 Identities=33% Similarity=0.504 Sum_probs=80.2
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
+...+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456799999999999999999999999999999999988 57889999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99986653
No 107
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=3.5e-15 Score=123.69 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
++++|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3679999999999999999999999999999999988 578999999999999999999999999999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7664
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5e-16 Score=130.94 Aligned_cols=86 Identities=33% Similarity=0.548 Sum_probs=79.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
....++|||+|||+.+++++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 4566899999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred chhhhhh
Q 006608 324 SEAEKNL 330 (639)
Q Consensus 324 ~~~~~~~ 330 (639)
+......
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 8765543
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=126.00 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=75.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3466899999999999999999999999999999999999999999999999999999999996 999999999999987
Q ss_pred c
Q 006608 324 S 324 (639)
Q Consensus 324 ~ 324 (639)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 5
No 110
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.8e-15 Score=125.10 Aligned_cols=86 Identities=29% Similarity=0.516 Sum_probs=80.2
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456789999999999999999999999999999999998 488999999999999999999999999999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++.....
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987664
No 111
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1e-15 Score=129.48 Aligned_cols=85 Identities=27% Similarity=0.461 Sum_probs=78.3
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCcc---CCcee
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPL---LGQPV 319 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~---~g~~l 319 (639)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 999887 88999
Q ss_pred eeccchhhh
Q 006608 320 MVKPSEAEK 328 (639)
Q Consensus 320 ~v~~~~~~~ 328 (639)
.|.++....
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999876543
No 112
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-15 Score=124.92 Aligned_cols=85 Identities=28% Similarity=0.486 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999988 8889999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 006608 429 TDQSGL 434 (639)
Q Consensus 429 ~~~~~~ 434 (639)
..+...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 877643
No 113
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.5e-16 Score=129.60 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=77.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+.+.
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 114
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.4e-15 Score=129.43 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=76.9
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|++||. +++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 777 8999999999
Q ss_pred cchhh
Q 006608 323 PSEAE 327 (639)
Q Consensus 323 ~~~~~ 327 (639)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 88654
No 115
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.8e-16 Score=130.03 Aligned_cols=84 Identities=18% Similarity=0.386 Sum_probs=78.3
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 116
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=2.6e-15 Score=137.85 Aligned_cols=139 Identities=21% Similarity=0.225 Sum_probs=79.3
Q ss_pred EEEcccccHHHHHH-hcCCccC--Cceeeeccchhhhhhhccccc-cCCCCCCCCCCCCCCCceEEEcCCCCcCCHHHHH
Q 006608 295 VEFYDVMSVPMAIA-LSGQPLL--GQPVMVKPSEAEKNLVQSNSS-IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR 370 (639)
Q Consensus 295 V~f~~~~~a~~al~-~~~~~~~--g~~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~ 370 (639)
.+|.+.++|..|+. +++.... |+.+................. ..............+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78888889988885 6665443 555544332111100000000 0000011122233557899999999999999999
Q ss_pred HHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccCCc
Q 006608 371 QVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 433 (639)
Q Consensus 371 ~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~~~ 433 (639)
++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.....
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999988 6899999999999999999999999999999999999999987654
No 117
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=124.35 Aligned_cols=82 Identities=32% Similarity=0.489 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567899999999999999999999999999999999987788999999999999999999999999999999999999
Q ss_pred ec
Q 006608 428 VT 429 (639)
Q Consensus 428 ~~ 429 (639)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 118
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.4e-16 Score=128.66 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=76.8
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDV-RLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~-~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
+.++|||+|||+.+|+++|.++|.+||.|..| .|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 999999999999999999999999999998 9999999999999987
Q ss_pred hhh
Q 006608 325 EAE 327 (639)
Q Consensus 325 ~~~ 327 (639)
.+.
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=7.8e-16 Score=128.98 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=81.9
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~ 327 (639)
++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|.+|++ |++..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999976 78999999999999999997 9999999999999987654
Q ss_pred hhhhccccccCCCCCCCCCCCCCCCceEEEcCCCC
Q 006608 328 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHF 362 (639)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 362 (639)
....... ..........+|||+||+.
T Consensus 76 ~~~~~~~---------~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFD---------RPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCC---------SCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCC---------CCCccccCCCceecCCCCC
Confidence 4221111 1111223467899999973
No 120
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=2.1e-15 Score=129.41 Aligned_cols=81 Identities=23% Similarity=0.435 Sum_probs=74.5
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
..+|||+|||..+++++|+++|..||.|..|.|+.+. +.++|||||+|.+.++|.+||..|+|..|.|+.|.|.++...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 5689999999999999999999999999999998874 347999999999999999999999999999999999998765
Q ss_pred Cc
Q 006608 432 SG 433 (639)
Q Consensus 432 ~~ 433 (639)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 121
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=6.4e-15 Score=124.31 Aligned_cols=85 Identities=24% Similarity=0.444 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC---eEEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG---RAIKVS 426 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g---~~i~v~ 426 (639)
.+.++|||+|||..+++++|+++|..||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|||..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999998889999999999999999999999999999988 999999
Q ss_pred eeccCCcc
Q 006608 427 AVTDQSGL 434 (639)
Q Consensus 427 ~~~~~~~~ 434 (639)
++......
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99877643
No 122
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=125.33 Aligned_cols=86 Identities=34% Similarity=0.616 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
...+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999988 578889999999999999999999999999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987764
No 123
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.6e-15 Score=122.69 Aligned_cols=84 Identities=46% Similarity=0.833 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999988 57889999999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87664
No 124
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=126.69 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=76.7
Q ss_pred cccccceeeccccccCHhHHHHHHhh-cCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCc-cCCceeeec
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSR-AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQP-LLGQPVMVK 322 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~-~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~-~~g~~l~v~ 322 (639)
.+.++|||+|||+++|+++|+++|.+ ||.|..|.|+.+. +|.++|||||+|.+.++|.+||. |++.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999999 9999999999999 89999999999999999999997 99999 999999999
Q ss_pred cchhhh
Q 006608 323 PSEAEK 328 (639)
Q Consensus 323 ~~~~~~ 328 (639)
++.+..
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 876543
No 125
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-14 Score=122.06 Aligned_cols=86 Identities=34% Similarity=0.517 Sum_probs=78.5
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
......++|||+|||..+++++|+++|..||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|+|..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34466799999999999999999999999999999999988544 79999999999999999999999999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9987664
No 126
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.3e-15 Score=122.92 Aligned_cols=85 Identities=19% Similarity=0.311 Sum_probs=74.5
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhc--CcccCC
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH--GRWFAG 618 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~ln--g~~~~g 618 (639)
..++++|||+|| |..++ +++|.++|++||.|..|.|+.. +|+|||+|++.++|++|++.|+ +..|.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 12 GAPSRVLHIRKL--PGEVT--------ETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457789999999 77777 8999999999999999988764 8999999999999999999875 678999
Q ss_pred eEEEEEEcCchhhcccCC
Q 006608 619 KMITATFMVPQTYEAKFP 636 (639)
Q Consensus 619 ~~i~v~~~~~~~~~~~~~ 636 (639)
++|.|.|+........-+
T Consensus 81 r~l~V~~a~~~~~~~~~~ 98 (101)
T 2cq1_A 81 QPIYIQYSNHKELKTSGP 98 (101)
T ss_dssp EECEEEECSCSSCCCCCC
T ss_pred cEEEEEEcCcccCcCCCC
Confidence 999999999877665433
No 127
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=2.1e-15 Score=127.38 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=75.9
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC---ceeee
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG---QPVMV 321 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g---~~l~v 321 (639)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++ +|.++|||||+|.+.++|.+||. |++..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 68999999999999999999996 99999998 99999
Q ss_pred ccchhhh
Q 006608 322 KPSEAEK 328 (639)
Q Consensus 322 ~~~~~~~ 328 (639)
.++....
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 8876543
No 128
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=124.88 Aligned_cols=80 Identities=36% Similarity=0.551 Sum_probs=75.2
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+++++|+++|.+||.|..|.|+.++. +.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44668999999999999999999999999999999999987 8999999999999999999997 999999999999987
Q ss_pred ch
Q 006608 324 SE 325 (639)
Q Consensus 324 ~~ 325 (639)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 129
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=6.4e-16 Score=121.76 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=71.8
Q ss_pred cceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 250 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 250 ~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
+|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||++++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999998753
No 130
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.1e-15 Score=133.63 Aligned_cols=86 Identities=26% Similarity=0.403 Sum_probs=79.5
Q ss_pred CcccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 243 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 243 ~~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred ccchhhh
Q 006608 322 KPSEAEK 328 (639)
Q Consensus 322 ~~~~~~~ 328 (639)
.++.+..
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9886544
No 131
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=5.2e-15 Score=125.37 Aligned_cols=82 Identities=27% Similarity=0.471 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ec
Q 006608 428 VT 429 (639)
Q Consensus 428 ~~ 429 (639)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=128.05 Aligned_cols=82 Identities=26% Similarity=0.328 Sum_probs=75.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
.....+|||+|||+++|+++|+++|..| .|..|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 899999999986 99999999999999999999999999999999999887
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
....
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 6544
No 133
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=126.88 Aligned_cols=82 Identities=20% Similarity=0.376 Sum_probs=76.2
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346789999999999999999999999999999999998 78999999999999999999997 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2d9p_A 90 AQRKE 94 (103)
T ss_dssp CSSCC
T ss_pred ecccc
Confidence 76543
No 134
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=124.20 Aligned_cols=85 Identities=29% Similarity=0.544 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcC------CceecCe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG------QLEIVGR 421 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~------g~~i~g~ 421 (639)
..+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 456789999999999999999999999999999999988 578899999999999999999999999 9999999
Q ss_pred EEEEEeeccCCc
Q 006608 422 AIKVSAVTDQSG 433 (639)
Q Consensus 422 ~i~v~~~~~~~~ 433 (639)
.|.|.++.....
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 135
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-15 Score=131.13 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=78.5
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCe-eEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKV-RDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i-~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|..||.| ..|.|+.++ +|.++|||||+|.+.++|.+||++++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3456899999999999999999999999999 899999998 89999999999999999999999999999999999998
Q ss_pred chhhhhh
Q 006608 324 SEAEKNL 330 (639)
Q Consensus 324 ~~~~~~~ 330 (639)
+......
T Consensus 91 a~~~~~~ 97 (114)
T 2cpy_A 91 VTLEDMR 97 (114)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 8766543
No 136
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=137.55 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=76.5
Q ss_pred ccccceeeccccccCHhHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G--~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..++|||+|||+++|+++|+++|..|| .|..|.|+.|+.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999997 899999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+.+..
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 86544
No 137
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=124.89 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=72.3
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcC--cccCC
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG--RWFAG 618 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng--~~~~g 618 (639)
..+..+|||+|| |..++ +++|+++|++||.|..|.|+.. +|||||+|++.++|++|++.|++ ..|.|
T Consensus 13 ~~~~~~LfV~nL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 13 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCEEEECSC--CTTSC--------HHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 456779999999 77777 8999999999999999999764 89999999999999999999874 78999
Q ss_pred eEEEEEEcCchhhc
Q 006608 619 KMITATFMVPQTYE 632 (639)
Q Consensus 619 ~~i~v~~~~~~~~~ 632 (639)
++|.|.|+......
T Consensus 82 r~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 82 QPIYIQFSNHKELK 95 (105)
T ss_dssp EECCBCCCSSSSCC
T ss_pred EEEEEEEcCCCCCC
Confidence 99999999876544
No 138
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=8.3e-15 Score=125.83 Aligned_cols=84 Identities=25% Similarity=0.396 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
...++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999988 48899999999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87664
No 139
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.3e-15 Score=123.79 Aligned_cols=86 Identities=28% Similarity=0.536 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC--CCCcceEEEEEecCHHHHHHHHHHc-CCceecCeEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TGHCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIK 424 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~--~~~~~g~afVef~~~~~A~~A~~~l-~g~~i~g~~i~ 424 (639)
...+.++|||+|||..+++++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..| |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34567899999999999999999999999999999999873 8889999999999999999999999 99999999999
Q ss_pred EEeeccCCc
Q 006608 425 VSAVTDQSG 433 (639)
Q Consensus 425 v~~~~~~~~ 433 (639)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 140
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=128.56 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=76.4
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++|||+|||+++|+++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|.+||+ |++..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 89999999999999999999997 9999999999999987
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.9e-16 Score=133.77 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=77.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
....++|||+|||+.+|+++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 44568999999999999999999999999999977888888999999999999999999999999999999999999988
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
....
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6654
No 142
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=6.4e-16 Score=125.03 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=74.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+|+. |+|..|.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999998754
No 143
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=122.93 Aligned_cols=84 Identities=26% Similarity=0.516 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEE-EeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELV-QLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v-~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
.+.++|||+|||..+++++|+++|.+||.|..| .|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 347899999999999999999999999999999 99988 7888999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=1.4e-15 Score=129.15 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=74.3
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
.....++|||+|||+.+|+++|+++|..||.|..|.|+.+..+|.++|||||+|.+.++|.+||...+..|.|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999998667999999999988
Q ss_pred chh
Q 006608 324 SEA 326 (639)
Q Consensus 324 ~~~ 326 (639)
+.+
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 145
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=125.29 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=76.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 4466899999999999999999999999999999999999999999999999999999999998 467899999999988
Q ss_pred hhhh
Q 006608 325 EAEK 328 (639)
Q Consensus 325 ~~~~ 328 (639)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6543
No 146
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=127.75 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=73.0
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
....++|||+|||+++|+++|+++|.+||. ..|.|+.++ ++.++|||||+|.+.++|.+||++++..|.|+.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 345689999999999999999999999995 499999998 899999999999999999999999999999999999765
Q ss_pred h
Q 006608 325 E 325 (639)
Q Consensus 325 ~ 325 (639)
.
T Consensus 90 ~ 90 (102)
T 1wez_A 90 S 90 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 147
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=127.00 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=74.1
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeE-EEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRD-VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~-~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
...++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45689999999999999999999999999997 888888 7899999999999999999999988999999999999876
Q ss_pred hh
Q 006608 325 EA 326 (639)
Q Consensus 325 ~~ 326 (639)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 148
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-14 Score=121.19 Aligned_cols=85 Identities=32% Similarity=0.454 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456799999999999999999999999999999999988433 689999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 149
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.5e-15 Score=117.06 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.-|||+||++.+++++|+++|.+||+|..+.++. ++|||||+|.+.++|.+|++.||+..|+|++|.|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999875 48999999999999999999999999999999999984
No 150
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=5.2e-15 Score=121.41 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCce--ecCeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLE--IVGRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~--i~g~~i~v~ 426 (639)
..++++|||+|||..+++++|.++|++||.|..|.|++. +|||||+|.+.++|.+|+..|++.. |.|++|.|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 356899999999999999999999999999999999864 7899999999999999999998764 789999999
Q ss_pred eeccCC
Q 006608 427 AVTDQS 432 (639)
Q Consensus 427 ~~~~~~ 432 (639)
|+..+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987653
No 151
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=124.98 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 355789999999999999999999999999999999988 5789999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+..+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87654
No 152
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=130.21 Aligned_cols=83 Identities=25% Similarity=0.435 Sum_probs=77.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
....++|||+|||+++|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||..++..|.|+.|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34568999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred hhh
Q 006608 325 EAE 327 (639)
Q Consensus 325 ~~~ 327 (639)
.+.
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 153
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=7.6e-16 Score=128.67 Aligned_cols=82 Identities=29% Similarity=0.440 Sum_probs=73.7
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecC-CCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~-~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
.....++|||+|||+++++++|+++|..|| |..|.|+.+. .+|.++|||||+|.+.++|.+||.|++..|.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345679999999999999999999999999 9999999998 68999999999999999999999999999999999998
Q ss_pred cchh
Q 006608 323 PSEA 326 (639)
Q Consensus 323 ~~~~ 326 (639)
++.+
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8754
No 154
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=8.6e-15 Score=124.66 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+.++|||+|||..+++++|+++|..||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 355789999999999999999999999999999999988 6889999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 87654
No 155
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=124.45 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=74.9
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCC-cccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRR-SKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~-~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+++|||+|||+++|+++|.++|.+||.|..|.|+.+..++. ++|||||+|.+.++|.+|+. |+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999988766 99999999999999999997 9999999999999887
Q ss_pred hh
Q 006608 325 EA 326 (639)
Q Consensus 325 ~~ 326 (639)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 156
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=119.98 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=71.1
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. ++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999998 66 9999999999764
No 157
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=129.20 Aligned_cols=84 Identities=18% Similarity=0.387 Sum_probs=78.1
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCee--------EEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccC
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVR--------DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL 315 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~--------~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~ 315 (639)
....++|||+|||+.+|+++|+++|.+||.|. .|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 69999999999999999999999999999997 9999999
Q ss_pred Cceeeeccchhhh
Q 006608 316 GQPVMVKPSEAEK 328 (639)
Q Consensus 316 g~~l~v~~~~~~~ 328 (639)
|+.|.|.++....
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999876543
No 158
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.58 E-value=8.2e-15 Score=125.82 Aligned_cols=84 Identities=31% Similarity=0.468 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|||+|||..+++++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44689999999999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 159
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=2.8e-15 Score=127.03 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=74.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+. +|.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999999999999 89999999999999999999997 999999999999987
Q ss_pred c
Q 006608 324 S 324 (639)
Q Consensus 324 ~ 324 (639)
+
T Consensus 105 a 105 (107)
T 3ulh_A 105 V 105 (107)
T ss_dssp E
T ss_pred e
Confidence 5
No 160
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=4.4e-15 Score=132.28 Aligned_cols=84 Identities=29% Similarity=0.463 Sum_probs=78.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
....++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4566899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+....
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76543
No 161
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.9e-15 Score=122.39 Aligned_cols=84 Identities=26% Similarity=0.481 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC----CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE----TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~----~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 456899999999999999999999999999999998773 4478999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987664
No 162
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.8e-14 Score=121.02 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
...+.++|||+|||..+++++|+++|..|| |..|.|+.+ .++.++|||||+|.+.++|.+|| .|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999988 57899999999999999999999 899999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 163
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=1.1e-15 Score=125.04 Aligned_cols=79 Identities=34% Similarity=0.603 Sum_probs=72.6
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccchhh
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 327 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~~~ 327 (639)
++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.+ |.+|+. |++..+.|+.|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 999997 9999999999999987654
Q ss_pred h
Q 006608 328 K 328 (639)
Q Consensus 328 ~ 328 (639)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 164
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.58 E-value=8.2e-15 Score=122.16 Aligned_cols=82 Identities=29% Similarity=0.391 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE--------EEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCcee
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL--------VQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI 418 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~--------v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i 418 (639)
...+..+|||+|||..+++++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 999988 6899999999999999999999999999999
Q ss_pred cCeEEEEEeec
Q 006608 419 VGRAIKVSAVT 429 (639)
Q Consensus 419 ~g~~i~v~~~~ 429 (639)
.|+.|.|.++.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 165
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=132.89 Aligned_cols=82 Identities=12% Similarity=0.282 Sum_probs=76.3
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeE--EEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCC----ccCCc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRD--VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ----PLLGQ 317 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~----~~~g~ 317 (639)
....++|||+|||+++|+++|+++|.+||.|.. |.|++++.+|.++|||||+|.+. +|.+||. |++. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346689999999999999999999999999966 99999999999999999999999 9999996 9999 99999
Q ss_pred eeeeccchhh
Q 006608 318 PVMVKPSEAE 327 (639)
Q Consensus 318 ~l~v~~~~~~ 327 (639)
.|.|.++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999988654
No 166
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=8.8e-15 Score=123.86 Aligned_cols=84 Identities=52% Similarity=0.911 Sum_probs=78.3
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+.++|||+|||..+++++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 355789999999999999999999999999999999988 6788999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 87654
No 167
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=124.37 Aligned_cols=83 Identities=24% Similarity=0.422 Sum_probs=75.5
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|.+||. |++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998875 389999999999999999997 99999999999999
Q ss_pred cchhhh
Q 006608 323 PSEAEK 328 (639)
Q Consensus 323 ~~~~~~ 328 (639)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 876543
No 168
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=125.61 Aligned_cols=82 Identities=32% Similarity=0.464 Sum_probs=76.0
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++. +.++|||||+|.+.++|.+||. |++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 344678999999999999999999999999999999999984 8999999999999999999997 99999999999998
Q ss_pred cchh
Q 006608 323 PSEA 326 (639)
Q Consensus 323 ~~~~ 326 (639)
++..
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 8754
No 169
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=118.24 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.....+|||+|||..+++++|+++|..| .|..|.|+.+.+|.++|||||+|.+.++|.+|+. |+|..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3557899999999999999999999999 9999999988889999999999999999999999 9999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7664
No 170
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.2e-15 Score=124.38 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=75.5
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|.+||. |++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999998654 68999999999999999997 99999999999999
Q ss_pred cchhhh
Q 006608 323 PSEAEK 328 (639)
Q Consensus 323 ~~~~~~ 328 (639)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 876543
No 171
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=2.3e-15 Score=129.75 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=77.5
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeee
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGK---VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 321 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v 321 (639)
....++|||+|||+++|+++|+++|..||. |..|.|+.+.. |.++|||||+|.+.++|.+||++++..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 345688999999999999999999999999 89999999988 99999999999999999999999999999999999
Q ss_pred ccchhhhh
Q 006608 322 KPSEAEKN 329 (639)
Q Consensus 322 ~~~~~~~~ 329 (639)
.++.....
T Consensus 93 ~~a~~~~~ 100 (118)
T 2db1_A 93 FKSHRTEM 100 (118)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 88866553
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=3.9e-15 Score=122.33 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=74.6
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
+..+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+|+. |++..|.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999984 68899999999999999999997 99999999999998
Q ss_pred cchh
Q 006608 323 PSEA 326 (639)
Q Consensus 323 ~~~~ 326 (639)
++.+
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 8754
No 173
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=2.4e-15 Score=125.50 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=76.2
Q ss_pred CCceEEEcCCCC------cCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecC-eE
Q 006608 351 GARRLYVGNLHF------NMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG-RA 422 (639)
Q Consensus 351 ~~~~l~v~nlp~------~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g-~~ 422 (639)
..++|||+|||. .+++++|.++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 9999999999999999999999988 579999999999999999999999999999999 99
Q ss_pred EEEEeeccC
Q 006608 423 IKVSAVTDQ 431 (639)
Q Consensus 423 i~v~~~~~~ 431 (639)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 174
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=122.44 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC--CceecCeEEEEEe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKVSA 427 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~--g~~i~g~~i~v~~ 427 (639)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+ +..|.|++|.|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 55789999999999999999999999999999999875 7899999999999999999775 4789999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+..+..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987653
No 175
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.2e-14 Score=120.70 Aligned_cols=83 Identities=23% Similarity=0.496 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-C-CCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-T-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~-~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
..+.++|||+|||..+++++|+++|..|| |..|.|+.+. + +.++|||||+|.+.++|.+|| .|++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35678999999999999999999999999 9999999884 4 889999999999999999999 999999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++.....
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987664
No 176
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=126.19 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=77.2
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCC-eeEEEEe-ecCCCCCcccEEEEEEcccccHHHHHH-hc--CCccCCcee
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGK-VRDVRLI-MDRNSRRSKGVGYVEFYDVMSVPMAIA-LS--GQPLLGQPV 319 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~-i~~~~i~-~d~~~~~~~g~afV~f~~~~~a~~al~-~~--~~~~~g~~l 319 (639)
+.+.++|||+|||+.+|+++|+++|..||. |..|.|+ .+..+|.++|||||+|.+.++|.+||. |+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346689999999999999999999999998 9999998 788889999999999999999999997 85 589999999
Q ss_pred eeccchhhhh
Q 006608 320 MVKPSEAEKN 329 (639)
Q Consensus 320 ~v~~~~~~~~ 329 (639)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9998876543
No 177
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.7e-15 Score=124.66 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|||+|||..+++++|.++|++||.|..|.|+.+..+.++|||||+|.+.++|.+|+. ++|..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34689999999999999999999999999999999998668999999999999999999999 89999999999999976
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
+..
T Consensus 88 ~~~ 90 (103)
T 1s79_A 88 DYF 90 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 178
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=123.34 Aligned_cols=85 Identities=24% Similarity=0.414 Sum_probs=79.3
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhcc-CCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCce-ecCeEEEEEe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEP-FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLE-IVGRAIKVSA 427 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~-~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~-i~g~~i~v~~ 427 (639)
.+..+|||+|||..+++++|+++|.. ||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|.. |+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 55789999999999999999999999 999999999988888999999999999999999999999999 9999999999
Q ss_pred eccCCcc
Q 006608 428 VTDQSGL 434 (639)
Q Consensus 428 ~~~~~~~ 434 (639)
+......
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 8766543
No 179
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.4e-15 Score=124.29 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=71.0
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCC--CeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G--~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+|||+|||..+++++|+++|++|| .|..|.|+.+ .+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999988 589999999999999999999999999999999999999988
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 180
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=119.53 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCcCCHHHHH----HHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
....+|||+|||..+++++|+ ++|.+||.|..|.|+.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 346799999999999999999 99999999999999988544 889999999999999999999999999999999
Q ss_pred EeeccCC
Q 006608 426 SAVTDQS 432 (639)
Q Consensus 426 ~~~~~~~ 432 (639)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 181
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=123.37 Aligned_cols=86 Identities=27% Similarity=0.386 Sum_probs=79.7
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeE--------EEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCcee
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--------LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI 418 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~--------~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i 418 (639)
.....++|||+|||..+++++|+++|..||.|. .|.|+.+ .++.++|||||+|.+.++|.+||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 6999988 6899999999999999999999999999999
Q ss_pred cCeEEEEEeeccCCc
Q 006608 419 VGRAIKVSAVTDQSG 433 (639)
Q Consensus 419 ~g~~i~v~~~~~~~~ 433 (639)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999887664
No 182
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-14 Score=120.80 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCC--ceecCeEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ--LEIVGRAIKV 425 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g--~~i~g~~i~v 425 (639)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3466799999999999999999999999999999998864 78999999999999999998764 4699999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.|+..+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987653
No 183
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=1e-14 Score=123.26 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCcee---cCeEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI---VGRAI 423 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i---~g~~i 423 (639)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999998 5788999999999999999999999999887 89999
Q ss_pred EEEeeccCCc
Q 006608 424 KVSAVTDQSG 433 (639)
Q Consensus 424 ~v~~~~~~~~ 433 (639)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 184
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=6.2e-15 Score=123.49 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=70.8
Q ss_pred cceEEecccC-CCCCCCc--------------hhhHhhHHHHHHHHh-hhcCcEEEEEEecC----CCccEEEEecchHH
Q 006608 544 SECLLLKNMF-DPKNETY--------------EEFDMDIKEDVEGEC-SKFGKLKHIFVEKD----SAGFVYLRFENTQS 603 (639)
Q Consensus 544 ~~~l~V~Nl~-~p~~~~~--------------~~~~~~~~~dl~~~f-~~~G~V~~v~v~~~----~~g~afV~F~s~e~ 603 (639)
++||+|.||+ .|...+. .+.|.++.+||+++| ++||.|..|.|+.+ ++|+|||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4699999998 5654332 134567889999999 99999999999765 47999999999999
Q ss_pred HHHHHHHhcCcccCCeEEEEEEcC
Q 006608 604 AFAAQRALHGRWFAGKMITATFMV 627 (639)
Q Consensus 604 A~~A~~~lng~~~~g~~i~v~~~~ 627 (639)
|++|+..|||+.|+|++|.|.|++
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999975
No 185
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=2.6e-15 Score=130.94 Aligned_cols=81 Identities=26% Similarity=0.467 Sum_probs=76.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
...++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||+|++..|.|+.|.|.++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred h
Q 006608 326 A 326 (639)
Q Consensus 326 ~ 326 (639)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 186
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=1.9e-15 Score=127.89 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=77.7
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeee
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGK---VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 321 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~---i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v 321 (639)
....++|||+|||+++|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|.+||.+++..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 446689999999999999999999999998 89999999988 99999999999999999999999999999999999
Q ss_pred ccchhhhh
Q 006608 322 KPSEAEKN 329 (639)
Q Consensus 322 ~~~~~~~~ 329 (639)
.++.+...
T Consensus 87 ~~a~~~~~ 94 (107)
T 2lmi_A 87 YEINNEDV 94 (107)
T ss_dssp EECCHHHH
T ss_pred EECCHHHH
Confidence 88876543
No 187
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=122.50 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||+|||..+++++|+++|..||.|..+.++.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 355789999999999999999999999999987766665 6888999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 188
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=1.6e-15 Score=125.50 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=74.4
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccch
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~~ 325 (639)
..++|||+|||+.+|+++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999999999999999999999999999997 99999999999998753
No 189
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=122.59 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeE-EEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeE----E
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA----I 423 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~-~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~----i 423 (639)
.+.++|||+|||..+++++|+++|.+||.|. .|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 9999988 58899999999999999999999999999999999 9
Q ss_pred EEEeeccCC
Q 006608 424 KVSAVTDQS 432 (639)
Q Consensus 424 ~v~~~~~~~ 432 (639)
.|.|+....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987554
No 190
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.4e-14 Score=118.02 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHc--CCceecCeEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN--GQLEIVGRAIKV 425 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l--~g~~i~g~~i~v 425 (639)
...++++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999998865 789999999999999999876 577899999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.|+.....
T Consensus 86 ~~a~~~~~ 93 (101)
T 2cq1_A 86 QYSNHKEL 93 (101)
T ss_dssp EECSCSSC
T ss_pred EEcCcccC
Confidence 99986653
No 191
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=1.7e-14 Score=124.48 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988 688899999999999999999999999999999999999
Q ss_pred eec
Q 006608 427 AVT 429 (639)
Q Consensus 427 ~~~ 429 (639)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 863
No 192
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2e-15 Score=125.70 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=75.3
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
...++|||+|||+.+|+++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|.+||. |++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456889999999999999999999999999999999999999999999999999999999995 9999999999999876
Q ss_pred h
Q 006608 325 E 325 (639)
Q Consensus 325 ~ 325 (639)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 193
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=118.73 Aligned_cols=82 Identities=26% Similarity=0.558 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC-CCC-cceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGH-CKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~-~~~-~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..++|||+|||..+++++|+++|.+||.|..|.|+.+. ++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999999999998873 333 7899999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7554
No 194
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.9e-15 Score=122.07 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=74.9
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
....++|||+|||+++|+++|+++|..| .|..|.|+.+ .+|.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 4466899999999999999999999999 9999999999 7799999999999999999999999999999999999887
Q ss_pred hh
Q 006608 325 EA 326 (639)
Q Consensus 325 ~~ 326 (639)
..
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 195
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=124.80 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=72.9
Q ss_pred cccccccceeecccccc------CHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC
Q 006608 244 PERDQRTVFAYQICLKA------DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 316 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~------te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g 316 (639)
.....++|||+|||+.+ |+++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+||. |+|..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34456899999999999 789999999999999999988 4678999999999999999999997 99999999
Q ss_pred c-eeeeccch
Q 006608 317 Q-PVMVKPSE 325 (639)
Q Consensus 317 ~-~l~v~~~~ 325 (639)
+ .|.|.++.
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 8 99998764
No 196
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=120.86 Aligned_cols=85 Identities=27% Similarity=0.356 Sum_probs=77.1
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE-EEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~-v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
+......+|||+|||+.+++++|+++|..||.|.. |.|+.+.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 33456789999999999999999999999999987 8888888999999999999999999999997 999999999999
Q ss_pred EeeccCC
Q 006608 426 SAVTDQS 432 (639)
Q Consensus 426 ~~~~~~~ 432 (639)
.++....
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9986544
No 197
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=4.3e-15 Score=136.34 Aligned_cols=85 Identities=25% Similarity=0.352 Sum_probs=78.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred cchhhh
Q 006608 323 PSEAEK 328 (639)
Q Consensus 323 ~~~~~~ 328 (639)
++....
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 876543
No 198
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=7.5e-15 Score=128.44 Aligned_cols=85 Identities=29% Similarity=0.458 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|.|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3466789999999999999999999999999999999988 578899999999999999999999999999999999999
Q ss_pred eeccCC
Q 006608 427 AVTDQS 432 (639)
Q Consensus 427 ~~~~~~ 432 (639)
|+..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987654
No 199
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=122.83 Aligned_cols=87 Identities=26% Similarity=0.427 Sum_probs=80.0
Q ss_pred CCCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 346 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 346 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
.......++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||.. ++..|.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 334566899999999999999999999999999999999998 6889999999999999999999998 99999999999
Q ss_pred EEeeccCCc
Q 006608 425 VSAVTDQSG 433 (639)
Q Consensus 425 v~~~~~~~~ 433 (639)
|.++..+..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999887664
No 200
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=3.4e-14 Score=122.61 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC-----CCccEEEEecchHHHHHHHHHhcCcc
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRW 615 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~-----~~g~afV~F~s~e~A~~A~~~lng~~ 615 (639)
..+.++|||.|| |..++ +++|+++|++||.|..|.|+.+ ++|+|||+|.+.++|++|++.|||..
T Consensus 37 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 37 GPEGCNLFIYHL--PQEFT--------DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCSEEEEEECS--CTTCC--------HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 456789999999 77777 8999999999999999999643 47999999999999999999999999
Q ss_pred cCCeEEEEEEc
Q 006608 616 FAGKMITATFM 626 (639)
Q Consensus 616 ~~g~~i~v~~~ 626 (639)
|+|+.|.|.|+
T Consensus 107 ~~g~~l~V~~a 117 (118)
T 2khc_A 107 VGTKRLKVQLK 117 (118)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEec
Confidence 99999999996
No 201
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=1.2e-14 Score=119.33 Aligned_cols=82 Identities=30% Similarity=0.510 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45789999999999999999999999999999999874 78889999999999999999999999999999999999987
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
...
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 665
No 202
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=121.89 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCc--ccCC
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR--WFAG 618 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~--~~~g 618 (639)
..++++|||.|| |..++ +++|+++|++||.|..|.|+. .+|+|||+|++.++|.+|++.|++. .|.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 12 VSVSPVVHVRGL--CESVV--------EADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCCSEEEEESC--CSSCC--------HHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 346789999999 77777 899999999999999999866 5899999999999999999999865 4999
Q ss_pred eEEEEEEcCchhhc
Q 006608 619 KMITATFMVPQTYE 632 (639)
Q Consensus 619 ~~i~v~~~~~~~~~ 632 (639)
++|.|.|+......
T Consensus 81 r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 QQAFFNYSTSKRIT 94 (104)
T ss_dssp SBCEEEECSSSSCC
T ss_pred EEEEEEEccCcccc
Confidence 99999999876544
No 203
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.3e-15 Score=121.26 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=69.7
Q ss_pred CCcceEEecccCCCC-CCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCc--ccCC
Q 006608 542 VPSECLLLKNMFDPK-NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR--WFAG 618 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~-~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~--~~~g 618 (639)
.++++|||.|| |. .++ +++|.++|++||.|..|.|+. .+|+|||+|++.++|..|++.|||. .|.|
T Consensus 13 ~p~~~l~V~nL--p~~~~t--------e~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 81 (102)
T 1x4d_A 13 ETRRVVHIMDF--QRGKNL--------RYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFG 81 (102)
T ss_dssp CCCCEEEEESC--CCSSSH--------HHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCEEEEeCC--CCCcCC--------HHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECC
Confidence 46789999999 77 766 899999999999999999965 4799999999999999999999975 4999
Q ss_pred eEEEEEEcCchh
Q 006608 619 KMITATFMVPQT 630 (639)
Q Consensus 619 ~~i~v~~~~~~~ 630 (639)
++|.|.|+....
T Consensus 82 r~l~V~~a~~~~ 93 (102)
T 1x4d_A 82 KPVRVHLSQKYK 93 (102)
T ss_dssp EECEEEEECCCT
T ss_pred cEEEEEECCCCC
Confidence 999999998643
No 204
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8.8e-15 Score=124.60 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcC--cccCC
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG--RWFAG 618 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng--~~~~g 618 (639)
..++++|||+|| |..++ +++|+++|++||.|+.|.|+.. +|+|||+|++.++|++|++.|++ ..|.|
T Consensus 28 ~~ps~~LfVgNL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 28 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457789999999 77777 8999999999999999999764 89999999999999999999985 68999
Q ss_pred eEEEEEEcCchhhcc
Q 006608 619 KMITATFMVPQTYEA 633 (639)
Q Consensus 619 ~~i~v~~~~~~~~~~ 633 (639)
++|.|.|+.......
T Consensus 97 r~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 97 QPIYIQFSNHKELKT 111 (119)
T ss_dssp BCCEEEECSSSSCCC
T ss_pred eEEEEEEccCCCCCc
Confidence 999999998776554
No 205
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=5.1e-15 Score=127.82 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=73.1
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCee--EEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVR--DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~--~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
....+|||+|||+.+|+++|+++|.+| .|. .|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456789999999999999999999999 566 899999988 9999999999999999999999888999999999987
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+...
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7544
No 206
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.6e-15 Score=122.88 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=72.7
Q ss_pred cccccceeeccccccCHhHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceee
Q 006608 246 RDQRTVFAYQICLKADERDVY----EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 320 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~ 320 (639)
...++|||+|||+.+++++|+ ++|.+||.|..|.|+.++.+ +|||||+|.+.++|.+||+ |||..|.|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356799999999999999999 99999999999999998875 8999999999999999997 999999999999
Q ss_pred eccchh
Q 006608 321 VKPSEA 326 (639)
Q Consensus 321 v~~~~~ 326 (639)
|.++.+
T Consensus 84 V~~a~~ 89 (96)
T 2dgx_A 84 VSLATG 89 (96)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 988754
No 207
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=5.3e-15 Score=124.11 Aligned_cols=82 Identities=32% Similarity=0.540 Sum_probs=76.1
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeecc
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 323 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~ 323 (639)
.....++|||+|||+.+|+++|.++|..||.|..|.|+.+. +|.++|||||+|.+.++|.+||. ++..|.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999 99999999999987
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 6543
No 208
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.6e-14 Score=119.89 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|..+ +.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999765 44689999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887653
No 209
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=1.3e-14 Score=126.92 Aligned_cols=85 Identities=25% Similarity=0.429 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345789999999999999999999999999999999988 5888999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 986653
No 210
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=3.6e-14 Score=123.59 Aligned_cols=86 Identities=26% Similarity=0.443 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|..||.|..|.|+.+.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34667899999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987664
No 211
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=119.86 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCC-cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCC--ceecCeEEEEE
Q 006608 350 GGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ--LEIVGRAIKVS 426 (639)
Q Consensus 350 ~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g--~~i~g~~i~v~ 426 (639)
.+.++|||+|||+ .+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4688999999999 9999999999999999999999875 57999999999999999998875 46999999999
Q ss_pred eeccCC
Q 006608 427 AVTDQS 432 (639)
Q Consensus 427 ~~~~~~ 432 (639)
|+....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998654
No 212
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=2.9e-15 Score=131.62 Aligned_cols=83 Identities=20% Similarity=0.188 Sum_probs=76.9
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCC---eeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGK---VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~---i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
...++|||+|||+++|+++|+++|.+||. |..|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45689999999999999999999999999 89999999988 999999999999999999999999999999999998
Q ss_pred cchhhhh
Q 006608 323 PSEAEKN 329 (639)
Q Consensus 323 ~~~~~~~ 329 (639)
++.....
T Consensus 121 ~a~~~e~ 127 (136)
T 2hgl_A 121 KSHRTEM 127 (136)
T ss_dssp ECCHHHH
T ss_pred ECChHHH
Confidence 8765443
No 213
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-14 Score=118.17 Aligned_cols=83 Identities=36% Similarity=0.668 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+.++|||+|||..+++++|+++|.+||.| .++.+.++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 44568999999999999999999999999977 566667888999999999999999999999999999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987653
No 214
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.55 E-value=6.9e-15 Score=133.76 Aligned_cols=84 Identities=19% Similarity=0.394 Sum_probs=78.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3466899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 86533
No 215
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=118.94 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=66.5
Q ss_pred ccceeecccccc------CHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCc-eee
Q 006608 249 RTVFAYQICLKA------DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ-PVM 320 (639)
Q Consensus 249 ~~l~v~nLp~~~------te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~-~l~ 320 (639)
++|||+|||+.+ |+++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|+. |+|..|.|+ .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 4678999999999999999999997 999999999 887
Q ss_pred e
Q 006608 321 V 321 (639)
Q Consensus 321 v 321 (639)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 7
No 216
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=122.53 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=72.9
Q ss_pred CCCcceEEecccCCCCC-CCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcC--cccC
Q 006608 541 GVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG--RWFA 617 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~-~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng--~~~~ 617 (639)
..++++|||.|| |.. ++ +++|.++|++||.|..|.|.. ++|+|||+|++.++|+.|++.||+ ..|.
T Consensus 22 ~~p~~~l~V~NL--p~~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNL--PHSGYS--------DSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESC--CCSSCC--------SHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCC--CCccCC--------HHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 457889999999 775 66 799999999999999999965 689999999999999999999875 5699
Q ss_pred CeEEEEEEcCchhhcccCC
Q 006608 618 GKMITATFMVPQTYEAKFP 636 (639)
Q Consensus 618 g~~i~v~~~~~~~~~~~~~ 636 (639)
|++|.|.|+....-...-|
T Consensus 91 Gr~l~V~~a~~~~~~~~~~ 109 (112)
T 1x4f_A 91 GRCVKVDLSEKYKKLVSGP 109 (112)
T ss_dssp SSCCEEEEECSCSSSSCCC
T ss_pred CEEEEEEECccccccccCC
Confidence 9999999998765444333
No 217
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=2.6e-14 Score=116.01 Aligned_cols=78 Identities=27% Similarity=0.577 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 55789999999999999999999999999999999988 5799999999999999999999974 778899999999875
No 218
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=3.7e-15 Score=131.62 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=78.4
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+.+|+++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999996 99999999999999
Q ss_pred cchhh
Q 006608 323 PSEAE 327 (639)
Q Consensus 323 ~~~~~ 327 (639)
++.+.
T Consensus 123 ~a~~~ 127 (135)
T 2lea_A 123 MARYG 127 (135)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 87643
No 219
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.6e-14 Score=119.56 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC-----eE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG-----RA 422 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g-----~~ 422 (639)
.....++|||+|||..+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|.| +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 3456789999999999999999999999999999999875 799999999999999999999999999 99
Q ss_pred EEEEeeccCCc
Q 006608 423 IKVSAVTDQSG 433 (639)
Q Consensus 423 i~v~~~~~~~~ 433 (639)
|.|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987653
No 220
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=122.62 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC--CceecCeEEEEEe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKVSA 427 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~--g~~i~g~~i~v~~ 427 (639)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|+ +..|.|++|.|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 55789999999999999999999999999999999875 7899999999999999999887 4689999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+..+..
T Consensus 104 a~~k~~ 109 (119)
T 2ad9_A 104 SNHKEL 109 (119)
T ss_dssp CSSSSC
T ss_pred ccCCCC
Confidence 986654
No 221
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=5.4e-15 Score=122.28 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+..+|||+|||..+++++|+++|.+||.|..+.++.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999987777765 68889999999999999999999999999999999999987
Q ss_pred c
Q 006608 429 T 429 (639)
Q Consensus 429 ~ 429 (639)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 222
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=2e-14 Score=117.31 Aligned_cols=80 Identities=34% Similarity=0.562 Sum_probs=75.2
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999988 58899999999999999999999 8999999999999999876
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 223
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=123.51 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCe-EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i-~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+..+|||+|||+.+++++|+++|..||.| ..|.|+.+.++.++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4557899999999999999999999999999 889999888899999999999999999999987 99999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86544
No 224
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.7e-14 Score=117.54 Aligned_cols=86 Identities=31% Similarity=0.473 Sum_probs=77.7
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
....+.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999988 579999999999999999999998 367999999999
Q ss_pred EeeccCCcc
Q 006608 426 SAVTDQSGL 434 (639)
Q Consensus 426 ~~~~~~~~~ 434 (639)
.++..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999877643
No 225
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=6.3e-15 Score=125.58 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=75.2
Q ss_pred cccccceeeccccccCHhHHH---HHHhhcCCeeEEEEeecCCCC---CcccEEEEEEcccccHHHHHH-hcCCccCCce
Q 006608 246 RDQRTVFAYQICLKADERDVY---EFFSRAGKVRDVRLIMDRNSR---RSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP 318 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~---~~f~~~G~i~~~~i~~d~~~~---~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~ 318 (639)
...++|||+|||+.+++++|. ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|++||+ |++..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 999999999999999988754 456999999999999999997 8999999999
Q ss_pred eeeccchhhh
Q 006608 319 VMVKPSEAEK 328 (639)
Q Consensus 319 l~v~~~~~~~ 328 (639)
|.|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999876543
No 226
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=1.8e-14 Score=124.06 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCC---eEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGT---VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~---i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
.....+|||+|||+.+++++|+++|..||. |..|.|+.+..|.++|||||+|.+.++|.+||+ |++..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 455789999999999999999999999999 899999988779999999999999999999999 9999999999999
Q ss_pred Eeecc
Q 006608 426 SAVTD 430 (639)
Q Consensus 426 ~~~~~ 430 (639)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99753
No 227
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.6e-14 Score=121.71 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCcCCHHHHH---HHhccCCCeEEEEeccCC-C---CCcceEEEEEecCHHHHHHHHHHcCCceecCe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLR---QVFEPFGTVELVQLPLDE-T---GHCKGFGFVQFARLEDARNALNLNGQLEIVGR 421 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~---~~f~~~G~i~~v~i~~~~-~---~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~ 421 (639)
.....+|||+|||+.+++++|+ ++|.+||.|..|.|+.+. + +.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4557899999999999999999 999999999999998873 3 35669999999999999999999999999999
Q ss_pred EEEEEeeccCC
Q 006608 422 AIKVSAVTDQS 432 (639)
Q Consensus 422 ~i~v~~~~~~~ 432 (639)
.|.|.++..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998776
No 228
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=120.60 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
......+|||+|||+.+++++|+++|.+||.| .|.|+.+.++.++|||||+|.+.++|.+||+ +|+..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 9999888889999999999999999999995 799999999999998
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87554
No 229
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=123.01 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=73.6
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 622 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~ 622 (639)
..++|||.|| |..++ +++|+++|++||.|..|.|+. ++|+|||+|.+.++|++|+..|||..|.|++|.
T Consensus 9 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNL--PAGTL--------AAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 4679999999 77777 899999999999999999864 789999999999999999999999999999999
Q ss_pred EEEcCchhhccc
Q 006608 623 ATFMVPQTYEAK 634 (639)
Q Consensus 623 v~~~~~~~~~~~ 634 (639)
|.|+....|...
T Consensus 78 V~~a~~~~~~~~ 89 (111)
T 1whx_A 78 LEWAPIGVFGAA 89 (111)
T ss_dssp EEEEETTTTCCC
T ss_pred EEECCCCccCCC
Confidence 999988777543
No 230
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=123.42 Aligned_cols=80 Identities=24% Similarity=0.435 Sum_probs=72.2
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccC--------
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL-------- 315 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~-------- 315 (639)
..+.++|||+|||+.+|+++|+++|..||.|..|.|+.+. ++.++|||||+|.+.++|.+||. |+|..|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 89999999999999999999997 9999994
Q ss_pred Cceeeeccch
Q 006608 316 GQPVMVKPSE 325 (639)
Q Consensus 316 g~~l~v~~~~ 325 (639)
+++|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 5667776654
No 231
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=129.52 Aligned_cols=82 Identities=26% Similarity=0.371 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCC--CeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G--~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
...+|||+|||+.+++++|+++|..|| .|..|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 9999999988 6899999999999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 86543
No 232
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=9.1e-15 Score=124.10 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=74.2
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
.....++|||+|||..+|+++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|.+|+. |+|..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999998864 489999999999999999997 99999999999998
Q ss_pred cchh
Q 006608 323 PSEA 326 (639)
Q Consensus 323 ~~~~ 326 (639)
++.+
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8754
No 233
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.1e-14 Score=140.80 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=76.1
Q ss_pred ccccceeeccccccCHhHHHHHHhhcC--CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G--~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..++|||+|||+.+|+++|+++|.+|| .|..|.|+.++.+|.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999997 999999999999988
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+....
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 76543
No 234
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=9e-14 Score=116.72 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+.++|||+|||..+++++|+++|.+||.|..|.|++ +||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 35578999999999999999999999999999999874 49999999999999999999999999999999999
Q ss_pred ccCCcc
Q 006608 429 TDQSGL 434 (639)
Q Consensus 429 ~~~~~~ 434 (639)
......
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876643
No 235
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.7e-14 Score=118.55 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.7
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccC--Ce
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA--GK 619 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~--g~ 619 (639)
.++++|||.|| |..++ +++|+++|++||.|..|.+... +|+|||+|.+.++|++|++.|||..|. |+
T Consensus 15 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 15 NPTTRLWVGGL--GPNTS--------LAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCSCEEEECC--CSSCC--------HHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 36679999999 77777 8999999999999999999764 899999999999999999999999999 99
Q ss_pred EEEEEEcCch
Q 006608 620 MITATFMVPQ 629 (639)
Q Consensus 620 ~i~v~~~~~~ 629 (639)
+|.|.|+.+.
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999999775
No 236
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=120.54 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCcC------CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe-E
Q 006608 350 GGARRLYVGNLHFNM------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-A 422 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~------~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~-~ 422 (639)
...++|||+|||..+ ++++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 789999999999999999998 56888999999999999999999999999999998 9
Q ss_pred EEEEeeccCC
Q 006608 423 IKVSAVTDQS 432 (639)
Q Consensus 423 i~v~~~~~~~ 432 (639)
|.|.++.+..
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987654
No 237
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=5.5e-14 Score=125.30 Aligned_cols=82 Identities=38% Similarity=0.629 Sum_probs=76.2
Q ss_pred CCCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 347 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 347 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
....+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34466899999999999999999999999999999999988 68889999999999999999999999999999999999
Q ss_pred Eee
Q 006608 426 SAV 428 (639)
Q Consensus 426 ~~~ 428 (639)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 238
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=121.66 Aligned_cols=82 Identities=34% Similarity=0.538 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999988743 37999999999999999999999999999999999998
Q ss_pred ccC
Q 006608 429 TDQ 431 (639)
Q Consensus 429 ~~~ 431 (639)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 239
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.53 E-value=5e-14 Score=128.04 Aligned_cols=84 Identities=29% Similarity=0.413 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|++..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999988 57889999999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 86553
No 240
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.52 E-value=5.3e-14 Score=125.22 Aligned_cols=86 Identities=30% Similarity=0.470 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
.....++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999888 578899999999999999999999999999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++.....
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 241
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=126.82 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEE--EEeccCC-CCCcceEEEEEecCHHHHHHHHHHcCCc----eecC
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL--VQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQL----EIVG 420 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~--v~i~~~~-~~~~~g~afVef~~~~~A~~A~~~l~g~----~i~g 420 (639)
...+.++|||+|||+.+++++|+++|.+||.|.. |.|+.+. +|.++|||||+|.+. +|.+|+..|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3466789999999999999999999999999976 9999994 999999999999999 999999999999 9999
Q ss_pred eEEEEEeeccCCc
Q 006608 421 RAIKVSAVTDQSG 433 (639)
Q Consensus 421 ~~i~v~~~~~~~~ 433 (639)
+.|.|.++.....
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987643
No 242
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=125.76 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=72.2
Q ss_pred ccccccceeeccccccCHhHHH----HHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCcee
Q 006608 245 ERDQRTVFAYQICLKADERDVY----EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 319 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~----~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l 319 (639)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+. |+|..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 6999999999988853 57899999999999999999996 99999999999
Q ss_pred eeccchhhhh
Q 006608 320 MVKPSEAEKN 329 (639)
Q Consensus 320 ~v~~~~~~~~ 329 (639)
.|.++.....
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9998865443
No 243
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.7e-15 Score=123.59 Aligned_cols=82 Identities=34% Similarity=0.607 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
..++|||+|||..+++++|+++|..||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3579999999999999999999999999999999888 588899999999999999999999999999999999999987
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 665
No 244
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=2.6e-14 Score=120.73 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcC-cEEEEEEe-cCCCccEEEEecchHHHHHHHHHhcCcccCCe
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 619 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G-~V~~v~v~-~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~ 619 (639)
....+|||.|| |..++ +++|+++|+.|| .|..+.|. ..++|+|||+|.+.++|++|++.|||..|+|+
T Consensus 26 ~~~~~l~VgnL--p~~~t--------e~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 26 AKRYRITMKNL--PEGCS--------WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CCCEEEEEECS--SCCCC--------HHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEECC--CCCCC--------HHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 35679999999 77777 899999999999 89999984 56899999999999999999999999999999
Q ss_pred EEEEEEcCchh
Q 006608 620 MITATFMVPQT 630 (639)
Q Consensus 620 ~i~v~~~~~~~ 630 (639)
.|.|.++....
T Consensus 96 ~i~V~~a~~~p 106 (111)
T 2jvr_A 96 VITVERDDNPP 106 (111)
T ss_dssp EEEEEESCC--
T ss_pred EEEEEECCCCC
Confidence 99999987543
No 245
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=4.8e-14 Score=116.79 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=69.4
Q ss_pred CCCcceEEecccCCCC-CCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCe
Q 006608 541 GVPSECLLLKNMFDPK-NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 619 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~-~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~ 619 (639)
..++++|||+|| |. .++ +++|+++|+.||.|..|.| .+|+|||+|.+.++|++|++.|||..|+|+
T Consensus 19 ~~~~~~l~V~nL--p~~~~t--------~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 19 SHMKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp CCTTCEEEEESC--CSSCCC--------HHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457789999999 76 666 8999999999999999999 479999999999999999999999999999
Q ss_pred EEEEEEcCch
Q 006608 620 MITATFMVPQ 629 (639)
Q Consensus 620 ~i~v~~~~~~ 629 (639)
.|.|.|+...
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 9999998653
No 246
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6e-14 Score=116.39 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec--CeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV--GRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~--g~~i~v~ 426 (639)
..+.++|||+|||..+++++|+++|.+||.|..|.|..+ +|||||+|.+.++|.+|+..|||..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 456789999999999999999999999999999999864 789999999999999999999999999 9999999
Q ss_pred eeccCC
Q 006608 427 AVTDQS 432 (639)
Q Consensus 427 ~~~~~~ 432 (639)
|+.++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 988764
No 247
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=128.38 Aligned_cols=81 Identities=19% Similarity=0.393 Sum_probs=75.6
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999996 99999999999997
Q ss_pred cc
Q 006608 323 PS 324 (639)
Q Consensus 323 ~~ 324 (639)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 248
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-15 Score=126.24 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=74.2
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
...++|||+|||+++|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+||+|++..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999999888 77778788999999999999999999999999999999999998875
Q ss_pred h
Q 006608 326 A 326 (639)
Q Consensus 326 ~ 326 (639)
+
T Consensus 94 ~ 94 (101)
T 1fj7_A 94 G 94 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=119.34 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
...+|||+|||+.+++++|+++|+.| .|..|.|+.+..|.++|||||+|.+.++|.+|| .||+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 899999999877999999999999999999999 6999999999999988753
No 250
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.6e-15 Score=127.34 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=73.8
Q ss_pred ccccceeeccccccCHhHHHHHHhhcCCe----eEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeec
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSRAGKV----RDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 322 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~~G~i----~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~ 322 (639)
...+|||+|||+++|+++|+++|.+||.| ..|.|+.+. +|.++|||||+|.+.++|.+||++++..|.|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45799999999999999999999999975 689999984 7999999999999999999999989999999999998
Q ss_pred cchhhh
Q 006608 323 PSEAEK 328 (639)
Q Consensus 323 ~~~~~~ 328 (639)
.+....
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 776544
No 251
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=1.2e-14 Score=114.28 Aligned_cols=74 Identities=28% Similarity=0.509 Sum_probs=70.0
Q ss_pred eEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
+|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|++ |+|..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999999988 488999999999999999999998 9999999999999875
No 252
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.51 E-value=6.2e-14 Score=118.88 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
...++|||+|||..+++++|+++|..||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEc
Confidence 45689999999999999999999999999999999998 578999999999999999999999875 8999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7665
No 253
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=123.07 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=74.1
Q ss_pred CCCceEEEcCCCCcCCHHHHH----HHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
.+..+|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|++|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 457899999999999999866 6999999999998864 5678999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.|+.....
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987654
No 254
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.7e-14 Score=118.99 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=70.4
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCC----
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG---- 618 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g---- 618 (639)
...+|||.|| |..++ +++|+++|++||.|..|.|+.+ |+|||+|.+.++|++|++.|||..|.|
T Consensus 14 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 14 SENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCEEEEESC--CSSCC--------HHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 4569999999 77777 8999999999999999999776 999999999999999999999999999
Q ss_pred -eEEEEEEcCchh
Q 006608 619 -KMITATFMVPQT 630 (639)
Q Consensus 619 -~~i~v~~~~~~~ 630 (639)
+.|.|.++.+..
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998754
No 255
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.3e-14 Score=118.29 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=71.4
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC--CCccEEEEecchHHHHHHHHHhcCcccCCe
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--SAGFVYLRFENTQSAFAAQRALHGRWFAGK 619 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~--~~g~afV~F~s~e~A~~A~~~lng~~~~g~ 619 (639)
.+.++|||.|| |..++ +++|+++|+.||.|..|.|... ++|+|||+|.+.++|++|++.|||..|.|+
T Consensus 20 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 20 NNDCRIYVGNL--PPDIR--------TKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCSSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 46679999999 77777 8999999999999999998543 579999999999999999999999999999
Q ss_pred EEEEEEcCchh
Q 006608 620 MITATFMVPQT 630 (639)
Q Consensus 620 ~i~v~~~~~~~ 630 (639)
.|.|.|+.+..
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999998764
No 256
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.9e-14 Score=114.27 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=71.9
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.+.++|||.|| |..++ +++|+++|+.||.|..|.+. +|+|||+|.+.++|++|++.|||..|.|+.|
T Consensus 6 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNL--PREAT--------EQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESC--CSSCC--------HHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCeEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 46789999999 77777 89999999999999999997 6899999999999999999999999999999
Q ss_pred EEEEcCchhhcc
Q 006608 622 TATFMVPQTYEA 633 (639)
Q Consensus 622 ~v~~~~~~~~~~ 633 (639)
.|.|+.+..-..
T Consensus 73 ~v~~a~~~~~~~ 84 (90)
T 2dnq_A 73 NVEASKNKSKAS 84 (90)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998765443
No 257
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.8e-14 Score=122.28 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
..++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999988 56889999999999999999999 999999999999999987
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 258
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.3e-14 Score=119.68 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=76.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCcee--------cC
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI--------VG 420 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i--------~g 420 (639)
....++|||+|||..+++++|+++|..||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3557899999999999999999999999999999999988889999999999999999999999999999 68
Q ss_pred eEEEEEeeccC
Q 006608 421 RAIKVSAVTDQ 431 (639)
Q Consensus 421 ~~i~v~~~~~~ 431 (639)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 259
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.5e-14 Score=113.08 Aligned_cols=77 Identities=29% Similarity=0.394 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHc-CCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l-~g~~i~g~~i~v~ 426 (639)
...+.++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+|+..| +|..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 3456789999999999999999999999999999999864 789999999999999999988 9999999999999
Q ss_pred eec
Q 006608 427 AVT 429 (639)
Q Consensus 427 ~~~ 429 (639)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 260
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.8e-14 Score=119.24 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=74.2
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
....++|||.|| |..++ +++|+++|+.||.|..|.|+.+ +|+|||+|.+.++|++|+..|||..|+|+.
T Consensus 22 ~~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGI--ASGLT--------DQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECC--SSCCC--------HHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 346679999999 77777 8999999999999999999765 899999999999999999999999999999
Q ss_pred EEEEEcCchhhccc
Q 006608 621 ITATFMVPQTYEAK 634 (639)
Q Consensus 621 i~v~~~~~~~~~~~ 634 (639)
|.|.|+.+..-...
T Consensus 91 l~v~~a~~~~~~~~ 104 (109)
T 1x4g_A 91 VKCYWGKESPDMTS 104 (109)
T ss_dssp CEEECCCCCCSSCC
T ss_pred EEEEecCCCCCCCC
Confidence 99999988654433
No 261
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=120.56 Aligned_cols=81 Identities=25% Similarity=0.514 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC--CCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~--~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
....++|||+|||..+++++|+++|..|| |..|.|+.+. +|.++|||||+|.+.++|.+|+ .|+|..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35578999999999999999999999999 9999999884 8889999999999999999999 899999999999999
Q ss_pred eeccC
Q 006608 427 AVTDQ 431 (639)
Q Consensus 427 ~~~~~ 431 (639)
++...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98754
No 262
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.51 E-value=2.1e-13 Score=118.72 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=75.0
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC----CCccEEEEecchHHHHHHHHHhcCccc
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWF 616 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~----~~g~afV~F~s~e~A~~A~~~lng~~~ 616 (639)
..++++|||.|| |..++ +++|+++|+.||.|..|.|..+ ++|+|||+|.+.++|.+|+..|||..|
T Consensus 32 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 32 VETGAKLLVSNL--DFGVS--------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp CSSCEEEEEESC--CSSCC--------HHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 346789999999 77777 8999999999999999998654 579999999999999999999999999
Q ss_pred CCeEEEEEEcCchhhcccC
Q 006608 617 AGKMITATFMVPQTYEAKF 635 (639)
Q Consensus 617 ~g~~i~v~~~~~~~~~~~~ 635 (639)
+|+.|.|.|+.......-.
T Consensus 102 ~g~~l~V~~a~~~~~~~~~ 120 (124)
T 2kt5_A 102 DGRPMDIQLVASQIDLEHH 120 (124)
T ss_dssp SSCEEEEEEECCTTCCCCC
T ss_pred CCcEEEEEEeCCCCCCCCC
Confidence 9999999999886654433
No 263
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.51 E-value=4.2e-15 Score=130.98 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=73.0
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 324 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~ 324 (639)
....++|||+|||+++|+++|+++|.+|| |..|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 67999999987 99999999999999999999999999999999999776
Q ss_pred hh
Q 006608 325 EA 326 (639)
Q Consensus 325 ~~ 326 (639)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 264
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=115.92 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=67.3
Q ss_pred ceEEEcCCCCcC------CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe-EEEE
Q 006608 353 RRLYVGNLHFNM------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-AIKV 425 (639)
Q Consensus 353 ~~l~v~nlp~~~------~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~-~i~v 425 (639)
++|||+|||..+ ++++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+ +|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999988 46888999999999999999999999999999999 8876
No 265
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.3e-14 Score=120.63 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=68.5
Q ss_pred ccceeecc----ccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcc----ccc----HHHHHH---hcCCc
Q 006608 249 RTVFAYQI----CLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYD----VMS----VPMAIA---LSGQP 313 (639)
Q Consensus 249 ~~l~v~nL----p~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~----~~~----a~~al~---~~~~~ 313 (639)
..|||+|| |+.+++.+|+.+|+.||.|..|.++.|+.||.++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999997 555 677765 69999
Q ss_pred cCCceeeeccc
Q 006608 314 LLGQPVMVKPS 324 (639)
Q Consensus 314 ~~g~~l~v~~~ 324 (639)
|.|+.|.|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999753
No 266
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.9e-14 Score=119.22 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCC-eEEEEec-cC-CCCCcceEEEEEecCHHHHHHHHHHcC--CceecCeEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLP-LD-ETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIK 424 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-i~~v~i~-~~-~~~~~~g~afVef~~~~~A~~A~~~l~--g~~i~g~~i~ 424 (639)
.+.++|||+|||..+++++|+++|..||. |..|.|+ .+ .++.++|||||+|.+.++|.+|+..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 55 577899999999999999999999996 5899999999
Q ss_pred EEeeccCCc
Q 006608 425 VSAVTDQSG 433 (639)
Q Consensus 425 v~~~~~~~~ 433 (639)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 267
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-14 Score=113.67 Aligned_cols=77 Identities=30% Similarity=0.517 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 557899999999999999999999999999999997 5699999999999999999999999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7664
No 268
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.5e-14 Score=117.09 Aligned_cols=80 Identities=29% Similarity=0.477 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+.++|||+|||..+++++|+++|.+||.|..|.|..+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 456789999999999999999999999999999999865 789999999999999999999999999999999998
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87653
No 269
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=4.4e-14 Score=119.47 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=70.9
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
..++++|||+|| |..++ +++|+++|+.||.|..|.|. +|+|||+|.+.++|++|+..|||..|+|+.
T Consensus 28 ~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 28 ELSNTRLFVRPF--PLDVQ--------ESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp CCSCSEEEECSS--CTTCC--------HHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 456789999999 77777 89999999999999999997 799999999999999999999999999999
Q ss_pred EEEEEcCchh
Q 006608 621 ITATFMVPQT 630 (639)
Q Consensus 621 i~v~~~~~~~ 630 (639)
|.|.|+.+..
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999987653
No 270
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=3.3e-14 Score=124.88 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCC---eEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGT---VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~---i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
......+|||+|||+.+++++|+++|..||. |..|.|+.+..|.++|||||+|.+.++|.+||+ |++..|+|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3455789999999999999999999999999 889999988669999999999999999999999 999999999999
Q ss_pred EEeecc
Q 006608 425 VSAVTD 430 (639)
Q Consensus 425 v~~~~~ 430 (639)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999753
No 271
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=112.68 Aligned_cols=78 Identities=29% Similarity=0.436 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+.++|||+|||..+++++|+++|++||.|..|.|+++ ||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456789999999999999999999999999999999843 9999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87653
No 272
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=118.74 Aligned_cols=77 Identities=12% Similarity=0.241 Sum_probs=68.7
Q ss_pred CCCcceEEe--cccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCccc--
Q 006608 541 GVPSECLLL--KNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF-- 616 (639)
Q Consensus 541 ~~~~~~l~V--~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~-- 616 (639)
..++.+||| .|| +..++ +++|+++|++||.|..|.|+. ++|||||+|++.++|++|++.|||..|
T Consensus 22 ~~pt~~L~V~Ng~L--~~~~t--------e~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 22 SYATQSLVVANGGL--GNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SSCCSEEEEETCTG--GGTCC--------HHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCEEEEECCCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 447789999 559 76666 899999999999999998864 689999999999999999999999998
Q ss_pred ---CCeEEEEEEcCc
Q 006608 617 ---AGKMITATFMVP 628 (639)
Q Consensus 617 ---~g~~i~v~~~~~ 628 (639)
.|.+|.|.|+..
T Consensus 91 ~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 91 DLGQKITLYLNFVEK 105 (114)
T ss_dssp TTSCEEECEEEEESC
T ss_pred ccCCCcEEEEEeccc
Confidence 799999999864
No 273
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.7e-15 Score=118.27 Aligned_cols=79 Identities=28% Similarity=0.499 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999988 58889999999999999999999999999999998877654
No 274
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7.5e-14 Score=116.28 Aligned_cols=79 Identities=25% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.+.++|||.|| |..++ +++|+++|+.||.|..|.+.. .+|+|||+|.+.++|++|++.|||..|.|++|
T Consensus 13 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 13 TQRSRLFVGNL--PPDIT--------EEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCTTEEEEESC--CTTCC--------HHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 46779999999 77777 899999999999999999975 48999999999999999999999999999999
Q ss_pred EEEEcCchhh
Q 006608 622 TATFMVPQTY 631 (639)
Q Consensus 622 ~v~~~~~~~~ 631 (639)
.|.|+.+..-
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpj_A 82 RVRFACHSAS 91 (99)
T ss_dssp EEEESSCCSC
T ss_pred EEEEcCCCCC
Confidence 9999987653
No 275
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=8.3e-14 Score=116.92 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=70.1
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.+.++|||.|| |..++ +++|+++|++||.|..|.|+ +++|||+|.+.++|++|++.|||..|.|+.|
T Consensus 9 ~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 9 AKVKVLFVRNL--ANTVT--------EEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCEEEECC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 35679999999 77777 89999999999999999996 5799999999999999999999999999999
Q ss_pred EEEEcCchhh
Q 006608 622 TATFMVPQTY 631 (639)
Q Consensus 622 ~v~~~~~~~~ 631 (639)
.|.|+.+..-
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999987653
No 276
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.3e-14 Score=120.10 Aligned_cols=82 Identities=27% Similarity=0.537 Sum_probs=76.7
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
..++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3589999999999999999999999999999999988 5788999999999999999999997 9999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7764
No 277
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.3e-15 Score=126.21 Aligned_cols=84 Identities=15% Similarity=0.314 Sum_probs=71.7
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|.++|.+||.|..+.+..+..++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467899999999999999999999999998443333333378899999999999999999997 999999999999998
Q ss_pred chhhh
Q 006608 324 SEAEK 328 (639)
Q Consensus 324 ~~~~~ 328 (639)
+....
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 76543
No 278
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=9.9e-15 Score=128.61 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
....+|||+|||+.+++++|+++|++|| |..|.|+.+..+.++|||||+|.+.++|.+|| .+++..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 66999999877999999999999999999999 789999999999999887
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 279
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=9.3e-14 Score=119.71 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=72.0
Q ss_pred eEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCcc-EEEEecchHHHHHHHHHhcCcccCC--eEEE
Q 006608 546 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF-VYLRFENTQSAFAAQRALHGRWFAG--KMIT 622 (639)
Q Consensus 546 ~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~-afV~F~s~e~A~~A~~~lng~~~~g--~~i~ 622 (639)
.|+|.|| ++.++ +++|.++|++||.|..|.|....+|+ |||+|.++++|++|++.|||..|.| ++|+
T Consensus 30 ~I~V~NL--~~~vt--------e~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 30 RIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEESC--CSCCC--------HHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred EEEECCC--CCCCC--------HHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 5679999 66666 89999999999999999987777888 9999999999999999999999988 9999
Q ss_pred EEEcCchhhcccCC
Q 006608 623 ATFMVPQTYEAKFP 636 (639)
Q Consensus 623 v~~~~~~~~~~~~~ 636 (639)
|+|+.+...+-.+.
T Consensus 100 I~~ak~~~l~v~~n 113 (130)
T 3zzy_A 100 IDFSKLTSLNVKYN 113 (130)
T ss_dssp EEECSCSSCCCCCC
T ss_pred EEecCCCceeEEec
Confidence 99999887665543
No 280
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=4.2e-14 Score=117.37 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCcCCHHHHH----HHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~----~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
.+.++|||+|||..+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 557899999999999999999 9999999999999874 4567899999999999999999999999999999999
Q ss_pred EeeccCC
Q 006608 426 SAVTDQS 432 (639)
Q Consensus 426 ~~~~~~~ 432 (639)
.|+....
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9988765
No 281
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=7e-14 Score=118.11 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCC-CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G-~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....+|||+|||+.+++++|+++|..|| .|..+.|+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999 8999988643 36899999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 282
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.49 E-value=1.3e-13 Score=118.40 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=72.3
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecC--CCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--SAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~--~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
++++|||.|| |..++ +++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|.+|+..|||..|+|+.
T Consensus 7 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 7 VNRILYIRNL--PYKIT--------AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5679999999 77777 8999999999999999998543 5799999999999999999999999999999
Q ss_pred EEEEEcCchhhc
Q 006608 621 ITATFMVPQTYE 632 (639)
Q Consensus 621 i~v~~~~~~~~~ 632 (639)
|.|.|+.+....
T Consensus 77 l~v~~a~~~~~~ 88 (115)
T 3lqv_A 77 LVVLYYNANRAF 88 (115)
T ss_dssp CEEEECCHHHHT
T ss_pred EEEEEecCChhh
Confidence 999999876544
No 283
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=111.75 Aligned_cols=77 Identities=29% Similarity=0.458 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+++ ||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 55789999999999999999999999999999999843 99999999999999999999999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 284
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.3e-14 Score=119.95 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
...++|||.|| |..++ +++|+++|+.||.|..|.+. .++|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 25 ~~~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNI--PHFAT--------EADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESC--CTTCC--------HHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCC--CcccC--------HHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 35679999999 77777 89999999999999999996 468999999999999999999999999999999
Q ss_pred EEEEcCc
Q 006608 622 TATFMVP 628 (639)
Q Consensus 622 ~v~~~~~ 628 (639)
.|.|+.+
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9999865
No 285
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=1.8e-13 Score=116.38 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=69.8
Q ss_pred CcceEEecccCCCCC-CCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 543 PSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~-~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.+++|||.|| |.. ++ +++|+++|++||.|..|.| ++|+|||+|.+.++|++|++.|||..|+|+.|
T Consensus 26 ~~~~l~V~nl--~~~~~t--------~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNL--NTALVK--------KSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp CSSEEEECSC--CCSSCC--------HHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCC--CcccCC--------HHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4579999999 766 66 8999999999999999999 57999999999999999999999999999999
Q ss_pred EEEEcCchhhc
Q 006608 622 TATFMVPQTYE 632 (639)
Q Consensus 622 ~v~~~~~~~~~ 632 (639)
.|.|+.+..-.
T Consensus 93 ~V~~a~~~~~~ 103 (110)
T 1wf1_A 93 DINMAGEPKPD 103 (110)
T ss_dssp CEEESCCCCSC
T ss_pred EEEECCCCCCC
Confidence 99999765433
No 286
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.1e-14 Score=113.58 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=71.0
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
++|||+|||..+++++|+++|++||.|..|.++.+ .++.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999988 578899999999999999999999999 9999999999886
No 287
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=1.2e-14 Score=118.77 Aligned_cols=80 Identities=35% Similarity=0.621 Sum_probs=72.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.+ |.+|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999988 57899999999999999 99999999999999999999998876
Q ss_pred Cc
Q 006608 432 SG 433 (639)
Q Consensus 432 ~~ 433 (639)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 288
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.9e-14 Score=112.27 Aligned_cols=75 Identities=16% Similarity=0.258 Sum_probs=68.6
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHh-cCcccCCeE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRAL-HGRWFAGKM 620 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~l-ng~~~~g~~ 620 (639)
.+.++|||.|| |..++ +++|+++|++||.|..|.++. ++|+|||+|.+.++|++|+..| ||..|+|++
T Consensus 10 ~~~~~l~V~~l--~~~~t--------~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 10 KTITTLYVGGL--GDTIT--------ETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SSCCCEEEECC--TTTSC--------HHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCccEEEEcCC--CCCCC--------HHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 46679999999 77777 899999999999999999976 4899999999999999999999 999999999
Q ss_pred EEEEEcC
Q 006608 621 ITATFMV 627 (639)
Q Consensus 621 i~v~~~~ 627 (639)
|.|.|+.
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999973
No 289
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.7e-14 Score=118.93 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=73.5
Q ss_pred cccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeec
Q 006608 244 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 322 (639)
Q Consensus 244 ~~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~ 322 (639)
...+.++|||+|||+++|+++|+++|..| ..|.++.+..++.++|||||+|.+.++|.+||. |++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999977 478888998899999999999999999999997 99999999999999
Q ss_pred cchhh
Q 006608 323 PSEAE 327 (639)
Q Consensus 323 ~~~~~ 327 (639)
++.+.
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 87654
No 290
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-15 Score=129.10 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=78.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeE--------EEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCC
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRD--------VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 316 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~--------~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g 316 (639)
.+.++|||+|||+.+++++|+++|.+||.|.. |.|+.++.++.++|||||+|.+.++|.+||. |++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46689999999999999999999999999998 9999999999999999999999999999997 99999999
Q ss_pred ceeeeccchhhhhh
Q 006608 317 QPVMVKPSEAEKNL 330 (639)
Q Consensus 317 ~~l~v~~~~~~~~~ 330 (639)
+.|.|.++.+....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999998765443
No 291
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.9e-14 Score=119.33 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=71.3
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
..+.++|||+|||+.+|+++|+++|.+||.| .|+.+ .++.++|||||+|.+.++|++||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467899999999999999999999999977 56666 678999999999999999999997 999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+.+.
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7654
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-13 Score=112.99 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=70.7
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhc--CcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCe
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF--GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 619 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~--G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~ 619 (639)
.++++|||.|| |..++ +++|+++|+.| |.|..|.+. +|+|||+|.+.++|++|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 13 SSVKILYVRNL--MLSTS--------EEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SCCCEEEEESC--CTTCC--------HHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred CCcCEEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 46779999999 77777 89999999999 999999884 68999999999999999999999999999
Q ss_pred EEEEEEcCchhhc
Q 006608 620 MITATFMVPQTYE 632 (639)
Q Consensus 620 ~i~v~~~~~~~~~ 632 (639)
+|.|.|+.+..-.
T Consensus 80 ~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 PIEVTLAKPVDKD 92 (99)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 293
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=4.8e-14 Score=130.44 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=76.6
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999997 999999999999988
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 7543
No 294
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=5.8e-14 Score=148.54 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=79.8
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+.++|||+|||+.+|+++|..+|.+||.|..|.|+.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999995 9999999999999998
Q ss_pred hhhhhhhc
Q 006608 325 EAEKNLVQ 332 (639)
Q Consensus 325 ~~~~~~~~ 332 (639)
.......+
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 76544333
No 295
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=1e-13 Score=117.18 Aligned_cols=77 Identities=25% Similarity=0.459 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+.++|||+|||..+++++|+++|.+||.|..|.|+ +|||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567899999999999999999999999999999987 679999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 296
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.48 E-value=1.1e-13 Score=120.47 Aligned_cols=80 Identities=28% Similarity=0.506 Sum_probs=75.3
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
.++|||+|||..+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999988 68899999999999999999999 7999999999999999875
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 297
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=116.49 Aligned_cols=79 Identities=25% Similarity=0.446 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|||+|||..+++++|+++|..||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34689999999999999999999999999999999876 7899999999999999999999999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7764
No 298
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=115.54 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCc-CCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC--CceecCeEEEE
Q 006608 349 SGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKV 425 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~--g~~i~g~~i~v 425 (639)
..+.++|||+|||+. +++++|+++|++||.|..|.|+.. +|||||+|.+.++|.+|+..|+ +..|.|++|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356789999999998 999999999999999999999753 7899999999999999999875 46699999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.|+..+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99986654
No 299
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=8.8e-14 Score=115.41 Aligned_cols=79 Identities=22% Similarity=0.422 Sum_probs=70.0
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHH----HHhhhcCcEEEEEEec--CCCccEEEEecchHHHHHHHHHhcCcc
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVE----GECSKFGKLKHIFVEK--DSAGFVYLRFENTQSAFAAQRALHGRW 615 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~----~~f~~~G~V~~v~v~~--~~~g~afV~F~s~e~A~~A~~~lng~~ 615 (639)
.++++|||.|| |..++ +++|. ++|+.||.|..|.+.. .++|+|||+|.+.++|++|+..|||..
T Consensus 6 ~~~~~l~V~nL--p~~~~--------~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 6 RPNHTIYINNL--NEKIK--------KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp CCCSEEEEESC--CTTSC--------HHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 46789999999 77766 66666 9999999999999864 357999999999999999999999999
Q ss_pred cCCeEEEEEEcCchh
Q 006608 616 FAGKMITATFMVPQT 630 (639)
Q Consensus 616 ~~g~~i~v~~~~~~~ 630 (639)
|+|+.|.|.|+.+..
T Consensus 76 ~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 76 FYDKPMRIQYAKTDS 90 (97)
T ss_dssp ETTEECEEEECSSCC
T ss_pred ECCcEEEEEEccCCC
Confidence 999999999997753
No 300
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=112.52 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
..++++|||.|| |..++ +++|+++|+.||.|..|.|. +++|||+|.+.++|++|+..|||..|.|+.
T Consensus 7 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNI--SPTCT--------NQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESC--CSSCC--------HHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 346789999999 77777 89999999999999999996 459999999999999999999999999999
Q ss_pred EEEEEcCchhh
Q 006608 621 ITATFMVPQTY 631 (639)
Q Consensus 621 i~v~~~~~~~~ 631 (639)
|.|.|+.+..-
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999987643
No 301
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7e-14 Score=115.23 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=69.1
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
...++|||+|||+.+|+++|+++|.+||.|..| +.+..+|. ||||+|.+.++|.+||.|++..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 356799999999999999999999999999987 66666665 9999999999999999999999999999998765
Q ss_pred hh
Q 006608 326 AE 327 (639)
Q Consensus 326 ~~ 327 (639)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 302
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=109.93 Aligned_cols=77 Identities=23% Similarity=0.269 Sum_probs=65.0
Q ss_pred Ccce-EEecccCCCCCCCchhhHhhHHHHHHHHhhhc-CcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 543 PSEC-LLLKNMFDPKNETYEEFDMDIKEDVEGECSKF-GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 543 ~~~~-l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~-G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
|+.+ |||.|| |+.++. .+|..+|.++|++| |.|..|. .|+|||+|.++++|++|++.|||..|.|++
T Consensus 7 p~~T~lYV~NL--~~~~~~----~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNL--PANKDG----KSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESC--CTTSCH----HHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCC--CCcCCH----HHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 4556 889999 777662 22356788999999 5999992 299999999999999999999999999999
Q ss_pred EEEEEcCchh
Q 006608 621 ITATFMVPQT 630 (639)
Q Consensus 621 i~v~~~~~~~ 630 (639)
|+|+||...-
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999998653
No 303
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=117.65 Aligned_cols=77 Identities=21% Similarity=0.437 Sum_probs=71.1
Q ss_pred ceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEE
Q 006608 545 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 624 (639)
Q Consensus 545 ~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~ 624 (639)
++|||.|| |..++ +++|+++|++||.|..|.|+.+++|+|||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 1 ~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNL--GTGAG--------KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECC--CSSCS--------HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred CEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 37999999 77777 899999999999999999977789999999999999999999999999999999999
Q ss_pred EcCchhh
Q 006608 625 FMVPQTY 631 (639)
Q Consensus 625 ~~~~~~~ 631 (639)
|+....-
T Consensus 71 ~a~~~~~ 77 (101)
T 2hvz_A 71 LSTGMPR 77 (101)
T ss_dssp ESSSCCC
T ss_pred EccCCCC
Confidence 9987653
No 304
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=112.26 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.+.++|||.|| |..++ +++|+++|+.||.|..|.|+ +++|||+|.+.++|++|++.|||..|+|+.|
T Consensus 7 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNV--SAACT--------SQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSCCEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 36679999999 77777 89999999999999999996 4599999999999999999999999999999
Q ss_pred EEEEcCchh
Q 006608 622 TATFMVPQT 630 (639)
Q Consensus 622 ~v~~~~~~~ 630 (639)
.|.|+.+..
T Consensus 74 ~v~~a~~~~ 82 (90)
T 2dnp_A 74 NVELSTKGQ 82 (90)
T ss_dssp EEEESCCCC
T ss_pred EEEECCCCC
Confidence 999998763
No 305
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-13 Score=108.72 Aligned_cols=76 Identities=28% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCCce-EEEcCCCCcCCHHH----HHHHhccC-CCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEE
Q 006608 350 GGARR-LYVGNLHFNMTEDQ----LRQVFEPF-GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 423 (639)
Q Consensus 350 ~~~~~-l~v~nlp~~~~e~~----l~~~f~~~-G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i 423 (639)
.++.+ |||+|||..+++++ |.++|.+| |.|..| ++ |+|||.|.+.++|.+|+..|+|..|+|++|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 34555 99999999999988 55899999 599988 23 899999999999999999999999999999
Q ss_pred EEEeeccCCcc
Q 006608 424 KVSAVTDQSGL 434 (639)
Q Consensus 424 ~v~~~~~~~~~ 434 (639)
.|.|+......
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999988753
No 306
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=127.96 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|||..+++++|+++|..||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999999988888899999999999999999999999999999999999997
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6553
No 307
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.1e-13 Score=113.17 Aligned_cols=83 Identities=31% Similarity=0.435 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
...+.++|||+|||..+++++|+++|..|+ .|.++.+ .++.++|||||+|.+.++|.+||..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346679999999999999999999999884 4556666 578899999999999999999999999999999999999
Q ss_pred eeccCCc
Q 006608 427 AVTDQSG 433 (639)
Q Consensus 427 ~~~~~~~ 433 (639)
++..+..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987654
No 308
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=7.4e-14 Score=118.79 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
..++|||+|||..+++++|+++|.+||.|..|.|+. .+|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 357999999999999999999999999999999875 378999999999999999999999999999999999976
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 309
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=2.5e-13 Score=112.45 Aligned_cols=76 Identities=26% Similarity=0.592 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCC-cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..+.++|||+|||. .+++++|+++|..||.|..|.|. +|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35678999999998 99999999999999999999984 67999999999999999999999999999999999
Q ss_pred eccC
Q 006608 428 VTDQ 431 (639)
Q Consensus 428 ~~~~ 431 (639)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 310
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=119.70 Aligned_cols=80 Identities=14% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCC---eEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGT---VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~---i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
....+|||+|||+.+++++|+++|..||. |..|.|+.+..|.++|||||+|.+.++|.+||. |++..|+|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45789999999999999999999999998 899999998669999999999999999999999 99999999999999
Q ss_pred eecc
Q 006608 427 AVTD 430 (639)
Q Consensus 427 ~~~~ 430 (639)
++..
T Consensus 88 ~a~~ 91 (107)
T 2lmi_A 88 EINN 91 (107)
T ss_dssp ECCH
T ss_pred ECCH
Confidence 9754
No 311
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=114.26 Aligned_cols=80 Identities=20% Similarity=0.314 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
....++|||+|||..+++++|+++|..||.|. +.++. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35578999999999999999999999999996 55553 356889999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
..+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 312
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=113.30 Aligned_cols=77 Identities=13% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEE-ecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV-EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v-~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
..+++|||.|| |..++ +++|+++|+.||.|. +.+ ...++|+|||+|.+.++|++|++.|||..|+|+.
T Consensus 17 ~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNL--PRDAR--------VSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCCEEEEECC--CTTCC--------HHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCC--CCcCc--------HHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35679999999 77777 899999999999996 443 4567899999999999999999999999999999
Q ss_pred EEEEEcCch
Q 006608 621 ITATFMVPQ 629 (639)
Q Consensus 621 i~v~~~~~~ 629 (639)
|.|.|+.+.
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999998765
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.6e-14 Score=115.50 Aligned_cols=76 Identities=25% Similarity=0.362 Sum_probs=69.1
Q ss_pred CCcceEEecccCCCC-CCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 542 VPSECLLLKNMFDPK-NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~-~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
.++++|||.|| |. .++ +++|.++|++||.|..|.|. +|+|||+|.+.++|++|++.|||..|.|+.
T Consensus 8 ~~~~~l~V~nl--p~~~~t--------~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp -CCEEEEEESS--TTSCCC--------HHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 46789999999 76 666 89999999999999999994 799999999999999999999999999999
Q ss_pred EEEEEcCchh
Q 006608 621 ITATFMVPQT 630 (639)
Q Consensus 621 i~v~~~~~~~ 630 (639)
|.|.|+....
T Consensus 75 l~V~~a~~~~ 84 (96)
T 2kvi_A 75 LILEVSSSNA 84 (96)
T ss_dssp BCEEEEECCC
T ss_pred EEEEEcCcCC
Confidence 9999986643
No 314
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.6e-14 Score=121.13 Aligned_cols=83 Identities=23% Similarity=0.357 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEE-EeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELV-QLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v-~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
.....+|||+|||+.+++++|+++|..||.|..+ .+....+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999774 44444789999999999999999999999 999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+....
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86543
No 315
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.9e-13 Score=111.41 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.+.++|||.|| . ++ +++|+++|++||.|..|.|. .++|+|||+|.+.++|++|+..|||..|.|++|
T Consensus 13 ~~~~~l~V~n~--~--~t--------~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE--D--MT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCSEEEEECS--S--CC--------HHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEcCC--C--CC--------HHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 35679999997 2 33 89999999999999999995 578999999999999999999999999999999
Q ss_pred EEEEcCchhhcccCC
Q 006608 622 TATFMVPQTYEAKFP 636 (639)
Q Consensus 622 ~v~~~~~~~~~~~~~ 636 (639)
.|.|+.+.......|
T Consensus 80 ~v~~a~~~~~~~~~~ 94 (97)
T 1x5p_A 80 KVNIARKQPMLDSGP 94 (97)
T ss_dssp EEECCSSCCCCCSSC
T ss_pred EEEECCCCCCCCCCC
Confidence 999998877655544
No 316
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=114.28 Aligned_cols=79 Identities=34% Similarity=0.558 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|||..+++++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 457899999999999999999999999988665 3467789999999999999999999999999999999999987
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
+..
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 665
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=113.88 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=70.6
Q ss_pred CCCceEEE--cCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCcee-----cCeE
Q 006608 350 GGARRLYV--GNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI-----VGRA 422 (639)
Q Consensus 350 ~~~~~l~v--~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i-----~g~~ 422 (639)
.++.+||| +||+..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..| .|.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45789999 779999999999999999999999988753 78999999999999999999999988 6899
Q ss_pred EEEEeeccCC
Q 006608 423 IKVSAVTDQS 432 (639)
Q Consensus 423 i~v~~~~~~~ 432 (639)
|.|.|+....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987544
No 318
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.4e-13 Score=115.16 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
..++|||+|||..+++++|+++|..||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 368999999999999999999999999999999974 478999999999999999999999999999999999764
No 319
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=8.3e-14 Score=120.00 Aligned_cols=80 Identities=24% Similarity=0.201 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCe----EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTV----ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i----~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
....+|||+|||+.+++++|+++|++||.| ..|.|+.+.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346899999999999999999999999975 688888888899999999999999999999986 899999999999
Q ss_pred Eeecc
Q 006608 426 SAVTD 430 (639)
Q Consensus 426 ~~~~~ 430 (639)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 320
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-12 Score=108.86 Aligned_cols=79 Identities=27% Similarity=0.409 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCcCCHHHHHHHhccC--CCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 348 YSGGARRLYVGNLHFNMTEDQLRQVFEPF--GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~--G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
...+.++|||+|||..+++++|+++|.+| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999 999999876 469999999999999999999999999999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.++.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=9.7e-14 Score=118.91 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=62.1
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeee
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 321 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v 321 (639)
...++|||+|||+++|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|++||+ |++..|.|+.|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 45689999999999999999999999999999999865 899999999999999997 9999999998444
No 322
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.44 E-value=4.6e-14 Score=111.01 Aligned_cols=74 Identities=26% Similarity=0.534 Sum_probs=69.1
Q ss_pred eEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 354 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 354 ~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
+|||+|||..+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999888 5788999999999999999999985 788999999999874
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.1e-12 Score=112.59 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=68.3
Q ss_pred eEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCcc-EEEEecchHHHHHHHHHhcCcccCC--eEEE
Q 006608 546 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF-VYLRFENTQSAFAAQRALHGRWFAG--KMIT 622 (639)
Q Consensus 546 ~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~-afV~F~s~e~A~~A~~~lng~~~~g--~~i~ 622 (639)
.|||.|| ++.++ +++|.++|++||.|..|.|... .|+ |||+|.+.++|..|++.|||..|.| ++|.
T Consensus 27 ~l~V~NL--~~~vt--------~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 27 LLSIQNP--LYPIT--------VDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp EEEEESC--CSCCC--------HHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred EEEEcCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 4578999 66666 8999999999999999988654 496 9999999999999999999999987 6999
Q ss_pred EEEcCchhhcccC
Q 006608 623 ATFMVPQTYEAKF 635 (639)
Q Consensus 623 v~~~~~~~~~~~~ 635 (639)
|.|+.+....-.+
T Consensus 96 V~~Ak~~~l~v~~ 108 (124)
T 2e5i_A 96 IEYARPTRLNVIR 108 (124)
T ss_dssp EECCSCSCCCCSS
T ss_pred EEEecCCcceeec
Confidence 9999887654433
No 324
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=1.2e-13 Score=133.45 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCC--CeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G--~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
..++|||+||++.+++++|+++|..|| .|..|.|+.+ .++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 9999999998 6999999999999999999999999999999999999999
Q ss_pred eccC
Q 006608 428 VTDQ 431 (639)
Q Consensus 428 ~~~~ 431 (639)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 325
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=1.5e-13 Score=118.61 Aligned_cols=80 Identities=30% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeE--EEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--LVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~--~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
.....+|||+|||+.+++++|+++|+.| .|. .|.|+.+..|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3456889999999999999999999999 566 89999987799999999999999999999985 6689999999998
Q ss_pred eecc
Q 006608 427 AVTD 430 (639)
Q Consensus 427 ~~~~ 430 (639)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 326
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.4e-13 Score=115.65 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCe----EEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTV----ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i----~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
.+.++|||+|||..+++++|+++|..||.| ..+.+. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 457899999999999999999999999998 455544 6778999999999999999999999999999999999
Q ss_pred EeeccCCc
Q 006608 426 SAVTDQSG 433 (639)
Q Consensus 426 ~~~~~~~~ 433 (639)
.|+.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987664
No 327
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-12 Score=107.97 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
..+.++|||+|| .+++++|+++|.+||.|..|.|. .++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345789999996 89999999999999999999985 34789999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77653
No 328
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=113.40 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=70.1
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEE-EEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeecc
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDV-RLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 323 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~-~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~ 323 (639)
...++|||+|||+.+|+++|+++|.+||.|..| .|+.++.++ .|||+|.+.++|.+|+. |++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 588776544 49999999999999997 999999999999998
Q ss_pred chhh
Q 006608 324 SEAE 327 (639)
Q Consensus 324 ~~~~ 327 (639)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 7654
No 329
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2.2e-13 Score=112.76 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 620 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~ 620 (639)
..+.++|||.|| |..++ +++|+++|+.||.|..+.....++|+|||+|.+.++|++|+..|||..|+|+.
T Consensus 13 ~~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTGGGEEEEESC--CSSCC--------HHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 446789999999 77777 89999999999999888333346799999999999999999999999999999
Q ss_pred EEEEEcCch
Q 006608 621 ITATFMVPQ 629 (639)
Q Consensus 621 i~v~~~~~~ 629 (639)
|.|.|+.+.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 999998764
No 330
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.4e-13 Score=111.82 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCC-eEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCC-ceecCeEEEEEe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ-LEIVGRAIKVSA 427 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~-i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g-~~i~g~~i~v~~ 427 (639)
.+.++|||+|||..+++++|+++|.+||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 45789999999999999999999999999 5555553 478999999999999999999999 999999999999
Q ss_pred eccCCc
Q 006608 428 VTDQSG 433 (639)
Q Consensus 428 ~~~~~~ 433 (639)
+.....
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987653
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.43 E-value=5.5e-13 Score=113.33 Aligned_cols=76 Identities=21% Similarity=0.454 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCc-CCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
...++|||+|||.. +++++|+++|.+||.|..|.| ++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999 999999999999999999988 3789999999999999999999999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 332
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=2.5e-13 Score=110.39 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=71.6
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 622 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~ 622 (639)
...+|||.|| |..++ +++|+++|++| .|..|.|+ .++|+|||+|.+.++|++|++.|||..|+|++|.
T Consensus 4 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNL--PQDSN--------CQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESC--CSSCC--------HHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 4569999999 77777 89999999999 99999886 5789999999999999999999999999999999
Q ss_pred EEEcCchhhcc
Q 006608 623 ATFMVPQTYEA 633 (639)
Q Consensus 623 v~~~~~~~~~~ 633 (639)
|.|++...+.-
T Consensus 72 V~~a~~~~~~~ 82 (88)
T 1wg1_A 72 VQLQPTDALLC 82 (88)
T ss_dssp EEECCCCCCCS
T ss_pred EEEcCCCceEe
Confidence 99998876543
No 333
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=112.37 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=69.2
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCc-EEEEEEecCCCccEEEEecchHHHHHHHHHhcC-cccCCe
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGK-LKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG-RWFAGK 619 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~-V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng-~~~~g~ 619 (639)
.+.++|||.|| |..++ +++|+++|+.||. |..+.+. ++|+|||+|.+.++|++|++.||| ..|+|+
T Consensus 6 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNL--SPAVT--------ADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECC--CTTCC--------HHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 35679999999 77777 8999999999999 6666663 479999999999999999999999 999999
Q ss_pred EEEEEEcCchhhc
Q 006608 620 MITATFMVPQTYE 632 (639)
Q Consensus 620 ~i~v~~~~~~~~~ 632 (639)
.|.|.|+.+..-.
T Consensus 74 ~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 74 IMEVDYSVSKKLR 86 (93)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCcccc
Confidence 9999999876544
No 334
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.2e-13 Score=112.63 Aligned_cols=77 Identities=25% Similarity=0.578 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCC-cCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~-~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+.++|||+|||. .+++++|+++|.+||.|..|.|. +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 5578999999998 99999999999999999999985 679999999999999999999999999999999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 86653
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.43 E-value=1.9e-13 Score=110.84 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=67.3
Q ss_pred ccccccceeeccccccCHhHHHHHHhhc----C-------CeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCc
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRA----G-------KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQP 313 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~----G-------~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~ 313 (639)
..+.++|||+|||+++|+++|+++|.+| | .|..+.++. ++|||||+|.+.++|.+||.|++..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHHhcCCCE
Confidence 4567899999999999999999999999 8 899999874 4899999999999999999999999
Q ss_pred cCCceeeecc
Q 006608 314 LLGQPVMVKP 323 (639)
Q Consensus 314 ~~g~~l~v~~ 323 (639)
|.|+.|.|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999863
No 336
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=7.7e-13 Score=113.97 Aligned_cols=78 Identities=26% Similarity=0.272 Sum_probs=70.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceE-EEEEecCHHHHHHHHHHcCCceecC--eEEEEEee
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF-GFVQFARLEDARNALNLNGQLEIVG--RAIKVSAV 428 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~-afVef~~~~~A~~A~~~l~g~~i~g--~~i~v~~~ 428 (639)
--.|||+||++.+++++|.++|++||.|..|.|+.. .+|| |||+|.+.++|.+|+..|||..|.| +.|.|.|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 346779999999999999999999999999988754 2577 9999999999999999999999998 89999999
Q ss_pred ccCCc
Q 006608 429 TDQSG 433 (639)
Q Consensus 429 ~~~~~ 433 (639)
.....
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87653
No 337
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=117.78 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=65.8
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCC---CCcccEEEEEEcccccHHHHHH-hcCCccCCceee
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS---RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 320 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~---~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~ 320 (639)
....++|||+|||+++|+++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|.+||+ |+ .+.|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34678999999999999999999999999999 888888877 7999999999999999999996 63 25666666
Q ss_pred ecc
Q 006608 321 VKP 323 (639)
Q Consensus 321 v~~ 323 (639)
+..
T Consensus 82 ~~~ 84 (114)
T 2dnl_A 82 CVS 84 (114)
T ss_dssp EEC
T ss_pred ecc
Confidence 543
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.6e-13 Score=114.93 Aligned_cols=82 Identities=27% Similarity=0.540 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|||+|||..+++++|+++|..||.|..|.|+.+.+|.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34689999999999999999999999999999999998888999999999999999999998 8999999999999988
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6653
No 339
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=4.7e-13 Score=119.78 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=68.7
Q ss_pred ceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEe-cCCCccEEEEecchHHHHHHHHHhcCcccCC--eEE
Q 006608 545 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAG--KMI 621 (639)
Q Consensus 545 ~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~-~~~~g~afV~F~s~e~A~~A~~~lng~~~~g--~~i 621 (639)
..|||.|| ++.++ +++|.++|++||.|..|.|. +.++|+|||+|.+.++|+.|++.|||..|.| ++|
T Consensus 47 l~l~VgNL--~~~vt--------ed~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 47 LRIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp EEEEECSC--CSCCC--------HHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred EEEEEeCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 36889999 66666 89999999999999999985 4457899999999999999999999999955 999
Q ss_pred EEEEcCchhhc
Q 006608 622 TATFMVPQTYE 632 (639)
Q Consensus 622 ~v~~~~~~~~~ 632 (639)
+|+|+.+....
T Consensus 117 ~V~~Ak~~~l~ 127 (164)
T 1sjr_A 117 RIDFSKLTSLN 127 (164)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEecCCccc
Confidence 99999987544
No 340
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=5.4e-14 Score=117.64 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 428 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~ 428 (639)
.+..+|||+|||..+++++|+++|..||.|.. .++.+ .++.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999999877 45555 578889999999999999999999 9999999999999998
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7655
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.2e-13 Score=110.48 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEE-EeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEe
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELV-QLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 427 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v-~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~ 427 (639)
....++|||+|||..+++++|+++|..||.|..| .|+.+.. .|.|||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999 5777632 23499999999999999999999999999999999
Q ss_pred eccCC
Q 006608 428 VTDQS 432 (639)
Q Consensus 428 ~~~~~ 432 (639)
+.+..
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 342
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-12 Score=107.87 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
...++|||+|||..+++++|+++|..||.|..| +....++. ||||+|.+.++|.+|+. |+|..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 346799999999999999999999999999988 33334554 99999999999999999 99999999999999876
Q ss_pred cCC
Q 006608 430 DQS 432 (639)
Q Consensus 430 ~~~ 432 (639)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 554
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=4.7e-14 Score=126.17 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=70.2
Q ss_pred ccccccceeeccccccCHhHHHHHHhhcCCeeEEE--E---eecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCce
Q 006608 245 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVR--L---IMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP 318 (639)
Q Consensus 245 ~~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~--i---~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~ 318 (639)
..+.++|||+|||+.+|+++|..+|..||.|..+. + +....+|.++|||||+|.+.++|.+||. |||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45668999999999999999999999999887641 1 1112368899999999999999999997 9999999999
Q ss_pred eeeccchh
Q 006608 319 VMVKPSEA 326 (639)
Q Consensus 319 l~v~~~~~ 326 (639)
|.|.++..
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99988754
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=2.3e-12 Score=110.67 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=67.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceE-EEEEecCHHHHHHHHHHcCCceecC--eEEEEEeec
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF-GFVQFARLEDARNALNLNGQLEIVG--RAIKVSAVT 429 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~-afVef~~~~~A~~A~~~l~g~~i~g--~~i~v~~~~ 429 (639)
..|||+||++.+++++|.++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.|+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34679999999999999999999999999998753 276 9999999999999999999999987 699999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.40 E-value=1.1e-12 Score=109.82 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCC-----cCCHHHHHHHhccCCCeEEEEeccCC--CCCcceEEEEEecCHHHHHHHHHHcCCceecCeE
Q 006608 350 GGARRLYVGNLHF-----NMTEDQLRQVFEPFGTVELVQLPLDE--TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 422 (639)
Q Consensus 350 ~~~~~l~v~nlp~-----~~~e~~l~~~f~~~G~i~~v~i~~~~--~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~ 422 (639)
.++++|+|.||.. ..++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5678999999963 23789999999999999999998873 3678999999999999999999999999999999
Q ss_pred EEEEeecc
Q 006608 423 IKVSAVTD 430 (639)
Q Consensus 423 i~v~~~~~ 430 (639)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 346
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=122.61 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEE--------EeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELV--------QLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 421 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v--------~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~ 421 (639)
.+.++|||+|||..+++++|.++|..||.|..+ .+. .++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 457899999999999999999999999988764 222 4678899999999999999999999999999999
Q ss_pred EEEEEeeccCC
Q 006608 422 AIKVSAVTDQS 432 (639)
Q Consensus 422 ~i~v~~~~~~~ 432 (639)
.|.|.++....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=3.4e-13 Score=115.47 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=64.4
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeE--
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM-- 620 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~-- 620 (639)
...+|||.|| |..++ +++|+++|++||.|..|.|+.+ |+|||+|++.++|++||+.|||..|+|+.
T Consensus 15 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEEC--CSSCC--------TTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 4569999999 77777 7999999999999999999776 99999999999999999999999999999
Q ss_pred ---EEEEEcCc
Q 006608 621 ---ITATFMVP 628 (639)
Q Consensus 621 ---i~v~~~~~ 628 (639)
|.|....+
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 66665543
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.2e-13 Score=113.05 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=69.9
Q ss_pred ceEEEcCC----CCcCCHHHHHHHhccCCCeEEEEeccC-CCCCcceEEEEEecC----HHH----HHHHHH--HcCCce
Q 006608 353 RRLYVGNL----HFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFAR----LED----ARNALN--LNGQLE 417 (639)
Q Consensus 353 ~~l~v~nl----p~~~~e~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afVef~~----~~~----A~~A~~--~l~g~~ 417 (639)
..|||+|| |+.+++.+|+++|+.||.|..|.++.+ .||.++|||||+|.+ ++. |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999 699999999999996 433 788888 789999
Q ss_pred ecCeEEEEEeecc
Q 006608 418 IVGRAIKVSAVTD 430 (639)
Q Consensus 418 i~g~~i~v~~~~~ 430 (639)
|+|+.|.|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998543
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=6.7e-13 Score=107.79 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeecc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 430 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~ 430 (639)
..++|||+|||..+++++|+++|.+| .|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46789999999999999999999999 99999885 4689999999999999999999999999999999999865
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 350
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=1.1e-12 Score=117.46 Aligned_cols=79 Identities=24% Similarity=0.229 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC--eEEEEEee
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG--RAIKVSAV 428 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g--~~i~v~~~ 428 (639)
....|||+||++.+++++|+++|++||.|..|.|.... .+|||||+|.+.++|..|+..|||..|.| +.|.|.|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34678999999999999999999999999999987542 47899999999999999999999999966 99999999
Q ss_pred ccCC
Q 006608 429 TDQS 432 (639)
Q Consensus 429 ~~~~ 432 (639)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8764
No 351
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-14 Score=122.38 Aligned_cols=84 Identities=29% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEE--------EEeccC-CCCCcceEEEEEecCHHHHHHHHHHcCCceecC
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL--------VQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 420 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~--------v~i~~~-~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g 420 (639)
.+.++|||+|||..+++++|+++|..||.|.. |.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34689999999999999999999999999988 888888 678899999999999999999999999999999
Q ss_pred eEEEEEeeccCCc
Q 006608 421 RAIKVSAVTDQSG 433 (639)
Q Consensus 421 ~~i~v~~~~~~~~ 433 (639)
+.|.|.++.....
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999887653
No 352
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=1.2e-12 Score=106.37 Aligned_cols=75 Identities=16% Similarity=0.329 Sum_probs=63.3
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCccc--CCe
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF--AGK 619 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~--~g~ 619 (639)
.+..+|||+|| |..++ +++|+++|++||.|..|.|+.+++|||||+|++.++|+ +|+|..+ .|+
T Consensus 9 ~~~~~l~V~~L--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~ 74 (89)
T 3d2w_A 9 HHGSKVFVGRC--TEDMT--------AEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGI 74 (89)
T ss_dssp --CCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCE
Confidence 46679999999 88777 89999999999999999998889999999999999998 3566664 599
Q ss_pred EEEEEEcCchh
Q 006608 620 MITATFMVPQT 630 (639)
Q Consensus 620 ~i~v~~~~~~~ 630 (639)
.|.|.++.+..
T Consensus 75 ~v~v~~a~~k~ 85 (89)
T 3d2w_A 75 SVHISNAEPKH 85 (89)
T ss_dssp EEEEEECC---
T ss_pred EEEEEEcCCCC
Confidence 99999998754
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=8e-13 Score=114.01 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEE
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 621 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i 621 (639)
.++++|||.|| . ++ +++|+++|+.||.|..|.|. .++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 37 ~~~~~lfVgnl--~--~t--------e~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--D--MT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCEEEEECS--S--CC--------HHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEcCC--C--CC--------HHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 35679999997 3 33 89999999999999999985 578999999999999999999999999999999
Q ss_pred EEEEcCchhhcc
Q 006608 622 TATFMVPQTYEA 633 (639)
Q Consensus 622 ~v~~~~~~~~~~ 633 (639)
.|.|+.+.....
T Consensus 104 ~V~~a~~~~~~~ 115 (121)
T 2bz2_A 104 KVNIARKQPMLD 115 (121)
T ss_dssp EEEECCSSCC--
T ss_pred EEEEeCCCCCCC
Confidence 999998876544
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.8e-12 Score=108.81 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccC-CC---CCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ET---GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~-~~---~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
...++|||+|||..+++++|+++|.+||.|. +.++.+ .+ |.++|||||+|.+.++|.+||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4468999999999999999999999999999 777776 34 7899999999999999999999884 367776666
Q ss_pred Eeec
Q 006608 426 SAVT 429 (639)
Q Consensus 426 ~~~~ 429 (639)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.8e-12 Score=104.99 Aligned_cols=72 Identities=35% Similarity=0.661 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccC----C-------CeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCcee
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPF----G-------TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI 418 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~----G-------~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i 418 (639)
.+.++|||+|||..+++++|+++|..| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 346899999999999999999999999 8 8999999865 789999999999999999 9999999
Q ss_pred cCeEEEEEe
Q 006608 419 VGRAIKVSA 427 (639)
Q Consensus 419 ~g~~i~v~~ 427 (639)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=8.2e-13 Score=124.03 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=73.1
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeeeccch
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 325 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v~~~~ 325 (639)
...++|||+|||+.+|+++|.++|++||.|..|.|+.+.. |.++|||||+|.+.++|.+||++.+..+.|+.|.|.+..
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 3568999999999999999999999999999999999865 889999999999999999999966779999999998754
Q ss_pred h
Q 006608 326 A 326 (639)
Q Consensus 326 ~ 326 (639)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=3.2e-12 Score=103.78 Aligned_cols=76 Identities=26% Similarity=0.389 Sum_probs=62.4
Q ss_pred CCCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCc--eecCeEEEEE
Q 006608 349 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL--EIVGRAIKVS 426 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~--~i~g~~i~v~ 426 (639)
..+..+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ +++. .+.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 355789999999999999999999999999999999875 68999999999999884 3444 4569999999
Q ss_pred eeccCC
Q 006608 427 AVTDQS 432 (639)
Q Consensus 427 ~~~~~~ 432 (639)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 987654
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.33 E-value=4.6e-12 Score=106.03 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCC--cC--------CHHHHHHHhccCCCeEEEEeccCCC---CCcceEEEEEecCHHHHHHHHHHcCCc
Q 006608 350 GGARRLYVGNLHF--NM--------TEDQLRQVFEPFGTVELVQLPLDET---GHCKGFGFVQFARLEDARNALNLNGQL 416 (639)
Q Consensus 350 ~~~~~l~v~nlp~--~~--------~e~~l~~~f~~~G~i~~v~i~~~~~---~~~~g~afVef~~~~~A~~A~~~l~g~ 416 (639)
.++++|+|.|+-. .+ .+++|+++|++||.|..|.|+.+.. +.++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4689999999943 33 3479999999999999999998842 357899999999999999999999999
Q ss_pred eecCeEEEEEeeccC
Q 006608 417 EIVGRAIKVSAVTDQ 431 (639)
Q Consensus 417 ~i~g~~i~v~~~~~~ 431 (639)
.|+|+.|.|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999997643
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.2e-12 Score=106.26 Aligned_cols=82 Identities=16% Similarity=0.265 Sum_probs=68.3
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 622 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~ 622 (639)
++++|||.|| |..++ +++|+++|+.||.|..|.|+.+++|+|||+|.+.++|++|+. ....+.|+.|.
T Consensus 4 ~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRC--TGDMT--------EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESC--CSSSC--------HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEE
T ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEE
Confidence 5679999999 77777 899999999999999999988899999999999999975432 13345999999
Q ss_pred EEEcCchhhcccCC
Q 006608 623 ATFMVPQTYEAKFP 636 (639)
Q Consensus 623 v~~~~~~~~~~~~~ 636 (639)
|.++.+..-...-|
T Consensus 72 v~~a~~~~~~~~~~ 85 (88)
T 1wf0_A 72 ISNAEPKHNSNSGP 85 (88)
T ss_dssp EECCCCCCCCCSCS
T ss_pred EEecCCCCCCCCCC
Confidence 99998876554433
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.32 E-value=4.7e-12 Score=118.82 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=73.8
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeeccC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 431 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~~~ 431 (639)
.++|||+|||..+++++|.++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.+..+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 579999999999999999999999999999999998788899999999999999999998765 5899999999998766
Q ss_pred C
Q 006608 432 S 432 (639)
Q Consensus 432 ~ 432 (639)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 5
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.8e-12 Score=104.07 Aligned_cols=78 Identities=31% Similarity=0.486 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|||..+++++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|.+|+.. ++.+.|+.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999865 578999999999999765332 356689999999987
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=4.9e-12 Score=109.06 Aligned_cols=77 Identities=25% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEEeec
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 429 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~~~~ 429 (639)
.+.++|||+|| .+++++|+++|.+||.|..|.|. .++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45789999996 69999999999999999999886 358899999999999999999999999999999999998
Q ss_pred cCCc
Q 006608 430 DQSG 433 (639)
Q Consensus 430 ~~~~ 433 (639)
....
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.5e-11 Score=104.65 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCcCC-----------HHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCc
Q 006608 348 YSGGARRLYVGNLHFNMT-----------EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL 416 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~~~-----------e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~ 416 (639)
...++++|+|.||..... +++|+++|.+||.|..|.|. +. .++|||||+|.+.++|.+|+..|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 346689999999954432 68999999999999999663 32 36899999999999999999999999
Q ss_pred eecCeEEEEEeeccCC
Q 006608 417 EIVGRAIKVSAVTDQS 432 (639)
Q Consensus 417 ~i~g~~i~v~~~~~~~ 432 (639)
.|+|+.|.|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987654
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=4.1e-12 Score=121.77 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=69.3
Q ss_pred CCCcceEEecccCCCCCCCchh-hHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCccc---
Q 006608 541 GVPSECLLLKNMFDPKNETYEE-FDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF--- 616 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~-~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~--- 616 (639)
....++|||.|| +..+.+.. -...++++|.++|++||.|..|.|+. ++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL--~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 131 RKKNKTLYVGGI--DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCCEEEEECT--TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred ccCCceeecCCC--ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 346779999999 54330000 00113899999999999999999975 589999999999999999999999999
Q ss_pred ---------CCeEEEEEEcCchh
Q 006608 617 ---------AGKMITATFMVPQT 630 (639)
Q Consensus 617 ---------~g~~i~v~~~~~~~ 630 (639)
.|+.|.|.||.+..
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=1e-11 Score=105.92 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCc-----CCHHHHHHHhccCCCeEEEEeccCC-----CCCcceEEEEEecCHHHHHHHHHHcCCceecC
Q 006608 351 GARRLYVGNLHFN-----MTEDQLRQVFEPFGTVELVQLPLDE-----TGHCKGFGFVQFARLEDARNALNLNGQLEIVG 420 (639)
Q Consensus 351 ~~~~l~v~nlp~~-----~~e~~l~~~f~~~G~i~~v~i~~~~-----~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g 420 (639)
++++|+|.||-.. -.+++|+++|++||.|..|.|+.+. ++.++|+|||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4789999999532 2468999999999999999998873 34678999999999999999999999999999
Q ss_pred eEEEEEeecc
Q 006608 421 RAIKVSAVTD 430 (639)
Q Consensus 421 ~~i~v~~~~~ 430 (639)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=9.3e-12 Score=119.26 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCcC---------CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCcee-
Q 006608 349 SGGARRLYVGNLHFNM---------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI- 418 (639)
Q Consensus 349 ~~~~~~l~v~nlp~~~---------~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i- 418 (639)
....++|||+||+..+ ++++|+++|++||.|..|.|+.. +|||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457899999999988 79999999999999999999853 89999999999999999999999999
Q ss_pred -----------cCeEEEEEeeccCC
Q 006608 419 -----------VGRAIKVSAVTDQS 432 (639)
Q Consensus 419 -----------~g~~i~v~~~~~~~ 432 (639)
.|+.|.|.|+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998765
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=5.4e-12 Score=105.49 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=63.3
Q ss_pred EcCCCCcCCHHHHHHHh------------ccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 357 VGNLHFNMTEDQLRQVF------------EPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 357 v~nlp~~~~e~~l~~~f------------~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
+.||+..+++++|.+.| ++||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|||..|+|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666677777666555 999999999999887788999999999999999999999999999999999
Q ss_pred EEee
Q 006608 425 VSAV 428 (639)
Q Consensus 425 v~~~ 428 (639)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=2e-11 Score=123.47 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCCCCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCccc--
Q 006608 539 TIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF-- 616 (639)
Q Consensus 539 ~~~~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~-- 616 (639)
....++++|||.|+..+..++ +++|.++|++||.|..|.++. ++|||||+|.+.++|++|++.|||..+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~t--------e~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCC--------HHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred ecCCCCCEEEEEcCCCCCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 345688999999964466666 899999999999999998865 799999999999999999999999987
Q ss_pred -CCe--EEEEEEcCch
Q 006608 617 -AGK--MITATFMVPQ 629 (639)
Q Consensus 617 -~g~--~i~v~~~~~~ 629 (639)
.|+ +|.|.|+..-
T Consensus 84 ~~g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 84 DLGQKITLYLNFVEKV 99 (345)
T ss_dssp TTSCEEECEEEECSSE
T ss_pred ccCCceEEEEEEeecc
Confidence 244 7899998543
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6e-11 Score=97.83 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=68.0
Q ss_pred cceEEecccCCC-----CCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCC
Q 006608 544 SECLLLKNMFDP-----KNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG 618 (639)
Q Consensus 544 ~~~l~V~Nl~~p-----~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g 618 (639)
...|.|.-.... ..++ +++|+++|++||.|..|.|+..++|||||+|++.++|..|++.+++ +.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~t--------e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYS--------KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCC--------HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSS
T ss_pred cceEEEeeeccCccCcCCCCC--------HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCC
Confidence 446777666432 2233 8999999999999999999888899999999999999999998555 689
Q ss_pred eEEEEEEcCchhhcccCCC
Q 006608 619 KMITATFMVPQTYEAKFPD 637 (639)
Q Consensus 619 ~~i~v~~~~~~~~~~~~~~ 637 (639)
++|.|.|+.+..-...-|.
T Consensus 80 ~~l~V~~a~~~~~~~~~~~ 98 (100)
T 2d9o_A 80 NPLKISWLEGQPQDASGPS 98 (100)
T ss_dssp SBCEEECSSCCCCCCSSCC
T ss_pred CeEEEEEccCCCCCCCCCC
Confidence 9999999988765554443
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=6.8e-11 Score=100.09 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCcC----------CHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 350 GGARRLYVGNLHFNM----------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~----------~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
.++++|.|.||-... .+++|+++|++||.|..|.|..+. .+|+|||+|.+.++|.+|+..|||..|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 568899999995432 236889999999999999997652 4899999999999999999999999999
Q ss_pred CeEEEEEeeccC
Q 006608 420 GRAIKVSAVTDQ 431 (639)
Q Consensus 420 g~~i~v~~~~~~ 431 (639)
|+.|.|.|+...
T Consensus 82 GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 GKMITAAYVPLP 93 (114)
T ss_dssp TEECEEEEECHH
T ss_pred CEEEEEEEEcHH
Confidence 999999998543
No 371
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.17 E-value=4.8e-11 Score=115.09 Aligned_cols=88 Identities=28% Similarity=0.614 Sum_probs=76.6
Q ss_pred CCcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec---------CCCccEEEEecchHHHHHHHHHhc
Q 006608 542 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK---------DSAGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~---------~~~g~afV~F~s~e~A~~A~~~ln 612 (639)
..+.++.+.|++.+.++. .++.++|.++|++||.|.+|.|+. .++|++||+|.+.++|++|+..||
T Consensus 122 ~~s~v~~l~n~v~~~e~~-----~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp CBCSEEEEESSCCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccchhhcCCCHHHHH-----HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 356689999998776543 356799999999999999999853 246899999999999999999999
Q ss_pred CcccCCeEEEEEEcCchhhccc
Q 006608 613 GRWFAGKMITATFMVPQTYEAK 634 (639)
Q Consensus 613 g~~~~g~~i~v~~~~~~~~~~~ 634 (639)
|+.|+|++|.|.|+++..|.+.
T Consensus 197 gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp TCBSSSSBCEEEECCHHHHHTT
T ss_pred CceECCeEEEEEEcCHHHhhhc
Confidence 9999999999999999999764
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=4.8e-10 Score=88.39 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCCcceEEecccCCCCCCCchhhH-hhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCe
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFD-MDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 619 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~-~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~ 619 (639)
++|--+|+|.-..+..+. +|+ .++..+|.+.|..||.|+.+++..+ .+||+|.+.++|.+|+. |||..++|+
T Consensus 4 GPpd~tv~V~~~~~~~~~---~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPEN---NFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CCSSCEEEEEEECSSTTT---CSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCCeEEEEeccCcccc---ccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345557777776322211 111 2356899999999999999999664 49999999999999999 999999999
Q ss_pred EEEEEEcCch
Q 006608 620 MITATFMVPQ 629 (639)
Q Consensus 620 ~i~v~~~~~~ 629 (639)
.|+|.++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998864
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-09 Score=90.22 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=62.4
Q ss_pred CceEEEcCCC-------CcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEE
Q 006608 352 ARRLYVGNLH-------FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 424 (639)
Q Consensus 352 ~~~l~v~nlp-------~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~ 424 (639)
...|.|.-.. ..+++++|+++|.+||.|..|.|+ +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 3455554433 458999999999999999999998 35689999999999999999998665 6799999
Q ss_pred EEeeccCC
Q 006608 425 VSAVTDQS 432 (639)
Q Consensus 425 v~~~~~~~ 432 (639)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987665
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=6.1e-10 Score=112.63 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=66.7
Q ss_pred CCCCceEEEcC--CCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceec---Ce--
Q 006608 349 SGGARRLYVGN--LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV---GR-- 421 (639)
Q Consensus 349 ~~~~~~l~v~n--lp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~---g~-- 421 (639)
..++.+|||+| |+..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 46789999999 578899999999999999999998865 3789999999999999999999999873 44
Q ss_pred EEEEEeec
Q 006608 422 AIKVSAVT 429 (639)
Q Consensus 422 ~i~v~~~~ 429 (639)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 67788874
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2.1e-09 Score=90.77 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=71.6
Q ss_pred CCcceEEecccCCCCC-CCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecc-hHHHHHHHHHhc--CcccC
Q 006608 542 VPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFEN-TQSAFAAQRALH--GRWFA 617 (639)
Q Consensus 542 ~~~~~l~V~Nl~~p~~-~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s-~e~A~~A~~~ln--g~~~~ 617 (639)
++..+|+|.|| +.. ++ .++|+++|+.||.|..|.+... ...|||+|.+ ..+|..|+.+|| |..|+
T Consensus 16 ~~G~il~v~~l--~~~~~s--------redLke~F~~~G~V~~Vd~~~g-~~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 16 KIGCLLKFSGD--LDDQTC--------REDLHILFSNHGEIKWIDFVRG-AKEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCEEEEEES--CCSSCC--------HHHHHHHTCSSCCEEEEECCTT-CSEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cCCeEEEEecC--CCCcCC--------HHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 46779999999 555 55 8999999999999999999664 4479999999 799999999995 88899
Q ss_pred CeEEEEEEcCchhhcccC
Q 006608 618 GKMITATFMVPQTYEAKF 635 (639)
Q Consensus 618 g~~i~v~~~~~~~~~~~~ 635 (639)
|..+++++...+.-..+|
T Consensus 85 g~~~~~evL~GeeE~~yw 102 (121)
T 1owx_A 85 NKEVTWEVLEGEVEKEAL 102 (121)
T ss_dssp SSSEEEEECCHHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHH
Confidence 999999999887766655
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.8e-09 Score=84.33 Aligned_cols=81 Identities=10% Similarity=0.178 Sum_probs=63.2
Q ss_pred CCCcceEEecccCCCCCCCchhhH-hhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCe
Q 006608 541 GVPSECLLLKNMFDPKNETYEEFD-MDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 619 (639)
Q Consensus 541 ~~~~~~l~V~Nl~~p~~~~~~~~~-~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~ 619 (639)
++|--+|+|.-+... ....+|+ .++..+|.+.|..||.|+.+++..+. +||+|.+.++|.+|+. |||..++|+
T Consensus 12 GPpD~Tv~V~~~~~~--~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPT--LEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCC--HHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCc--ccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 456668888877211 0001121 23568899999999999999996653 9999999999999998 999999999
Q ss_pred EEEEEEcC
Q 006608 620 MITATFMV 627 (639)
Q Consensus 620 ~i~v~~~~ 627 (639)
.|+|.+-.
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998754
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.7e-08 Score=85.34 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCc-CCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecC-HHHHHHHHHHc--CCceecCeEE
Q 006608 348 YSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFAR-LEDARNALNLN--GQLEIVGRAI 423 (639)
Q Consensus 348 ~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~-~~~A~~A~~~l--~g~~i~g~~i 423 (639)
...+...|+|+||+.. ++.++|+++|+.||.|..|.|..+.+ .|||+|.+ ..+|..|+..| ++..|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 3456789999999999 99999999999999999999998743 59999999 89999999988 4789999988
Q ss_pred EEEeecc
Q 006608 424 KVSAVTD 430 (639)
Q Consensus 424 ~v~~~~~ 430 (639)
.+....-
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 8887543
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=3.7e-08 Score=77.66 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=61.3
Q ss_pred CCCceEEEcCCCC----c-CC---HHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCe
Q 006608 350 GGARRLYVGNLHF----N-MT---EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 421 (639)
Q Consensus 350 ~~~~~l~v~nlp~----~-~~---e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~ 421 (639)
++..+|+|...+. . .. -.+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+|+. |||..++|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 3456777776652 2 23 2678999999999999999976 48999999999999998 999999999
Q ss_pred EEEEEeeccC
Q 006608 422 AIKVSAVTDQ 431 (639)
Q Consensus 422 ~i~v~~~~~~ 431 (639)
.|+|.++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999997743
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.52 E-value=2.9e-07 Score=88.34 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=65.9
Q ss_pred CceEEEcCCCC-----cCCHHHHHHHhccCCCeEEEEeccC-----CCCCcceEEEEEecCHHHHHHHHHHcCCceecCe
Q 006608 352 ARRLYVGNLHF-----NMTEDQLRQVFEPFGTVELVQLPLD-----ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 421 (639)
Q Consensus 352 ~~~l~v~nlp~-----~~~e~~l~~~f~~~G~i~~v~i~~~-----~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~ 421 (639)
...+.+.|+.. .-.+++|.+.|.+||.|..+.|+.+ .++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34555655532 2356799999999999999999754 3558899999999999999999999999999999
Q ss_pred EEEEEeecc
Q 006608 422 AIKVSAVTD 430 (639)
Q Consensus 422 ~i~v~~~~~ 430 (639)
+|.|.|...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=3.5e-07 Score=72.40 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCc------CCH---HHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC
Q 006608 350 GGARRLYVGNLHFN------MTE---DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 420 (639)
Q Consensus 350 ~~~~~l~v~nlp~~------~~e---~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g 420 (639)
++.-+|+|..++.. ..+ .+|.+.|..||.|..++|+.+ -+||+|.+.++|.+||. |+|..|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCC
Confidence 45678888877632 232 568899999999999999987 39999999999999999 99999999
Q ss_pred eEEEEEee
Q 006608 421 RAIKVSAV 428 (639)
Q Consensus 421 ~~i~v~~~ 428 (639)
+.|+|.+-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999874
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=9.3e-07 Score=71.18 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=65.2
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhc-----CcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccC
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF-----GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA 617 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~-----G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~ 617 (639)
..++|-|.|| |.+.+ ..-|+.++.++ |.|+.|.+..+- +-|+|+|++...|-+|..+|+|..|.
T Consensus 20 ~~rtiaL~~i--pDtvn--------darIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 20 LETLICLFPL--SDKVS--------PSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTSCEEEECC--CTTCC--------HHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CCcEEEEecC--CCCCC--------HHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeec
Confidence 4669999999 77766 68999999999 999999996553 55999999999999999999999999
Q ss_pred CeEEEEEEcCc
Q 006608 618 GKMITATFMVP 628 (639)
Q Consensus 618 g~~i~v~~~~~ 628 (639)
|++|.|.-+.+
T Consensus 89 gr~Lr~gTv~e 99 (117)
T 2l9w_A 89 GKVIRSGTIND 99 (117)
T ss_dssp TEEEEEECHHH
T ss_pred CeEEEecCHHH
Confidence 99999986543
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.8e-06 Score=68.44 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=66.7
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccC-----CCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPF-----GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~-----G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
.++|-|.|||..++...|+.+++++ |.|..|.+..+- +-|+|+|.+...|-+|.-+|+|..|.|+.|.+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 5789999999999999999999999 999999998873 359999999999999999999999999999987
Q ss_pred eec
Q 006608 427 AVT 429 (639)
Q Consensus 427 ~~~ 429 (639)
-+.
T Consensus 96 Tv~ 98 (117)
T 2l9w_A 96 TIN 98 (117)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=6.9e-05 Score=60.39 Aligned_cols=81 Identities=23% Similarity=0.159 Sum_probs=63.5
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEE
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 623 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v 623 (639)
..+|+|.|| +.+.=.+ .++.+.|+++|..|+.+......+ +-.-+.|.|.++++|.+|...||+..|.|+.|+|
T Consensus 5 pntLiitnl--~~~vF~~---~~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVA--NDDVFSE---SETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECC--CGGGGST---TTHHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecC--CHHHcCC---HHHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 348999999 2211001 123589999999999998877755 3456899999999999999999999999999999
Q ss_pred EEcCchh
Q 006608 624 TFMVPQT 630 (639)
Q Consensus 624 ~~~~~~~ 630 (639)
-|+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9987443
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=8.2e-05 Score=59.60 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=72.5
Q ss_pred ccccceeeccccccCHhHHHHHHhh-----cCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccCCceeee
Q 006608 247 DQRTVFAYQICLKADERDVYEFFSR-----AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 321 (639)
Q Consensus 247 ~~~~l~v~nLp~~~te~~l~~~f~~-----~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~g~~l~v 321 (639)
..++|.|.|||+.+.++.|.-+|+. =|.|..+.... +-|+|+|.+.+.|++.|+...+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 4478999999999999999999997 15888888752 5799999999999999998889999999999
Q ss_pred ccchhhhhhhccccccCCCCCCCCCCCCCCCceEEEcCCCCcCC
Q 006608 322 KPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMT 365 (639)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 365 (639)
.+..+ ....+|++.+|++.+.
T Consensus 79 ~P~~~-----------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP-----------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC-----------------------CCCCCCCCCSCCCCCC
T ss_pred EcCCC-----------------------CCcceEeeecCCCCCC
Confidence 66321 3356788888887654
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.00033 Score=56.41 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=63.2
Q ss_pred CceEEEcCCCCcC-C----HHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEEE
Q 006608 352 ARRLYVGNLHFNM-T----EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 426 (639)
Q Consensus 352 ~~~l~v~nlp~~~-~----e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v~ 426 (639)
..+|+|.||+..+ . .+.++.+|..|+++..+.+.+. -.-+.|.|.++++|.+|-..|++..|.|..|+|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4689999998765 2 2678999999999988888765 2358999999999999999999999999999999
Q ss_pred eec
Q 006608 427 AVT 429 (639)
Q Consensus 427 ~~~ 429 (639)
|+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 987
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.0008 Score=55.84 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=59.2
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCC-eEE
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG-KMI 621 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g-~~i 621 (639)
....|.|.++ |... ...|..+|++||.|+.... .....+..|+|.+..+|++||. .||..|+| ..|
T Consensus 23 ~~~wVtVFGF--p~~~---------~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mI 89 (119)
T 1wwh_A 23 DDTWVTVFGF--PQAS---------ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMI 89 (119)
T ss_dssp GGGEEEEECC--CGGG---------HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEEC
T ss_pred CCCEEEEECC--CHHH---------HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEE
Confidence 4568889998 4332 5899999999999998887 3356799999999999999998 59999985 777
Q ss_pred EEEEcC
Q 006608 622 TATFMV 627 (639)
Q Consensus 622 ~v~~~~ 627 (639)
=|-.+.
T Consensus 90 GV~p~~ 95 (119)
T 1wwh_A 90 GVKPCI 95 (119)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 777764
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.11 E-value=0.00034 Score=58.83 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=60.9
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEE-EEEec------------------CCCccEEEEecchHHH
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVEK------------------DSAGFVYLRFENTQSA 604 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~-v~v~~------------------~~~g~afV~F~s~e~A 604 (639)
...|.|.++ |... ...|.++|++||.|.. +.+.. .+..+..|+|++..+|
T Consensus 7 e~~VtVFGF--p~~~---------~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A 75 (132)
T 3p3d_A 7 ELAILVFGY--PETM---------ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASA 75 (132)
T ss_dssp -CEEEEECC--CGGG---------HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHH
T ss_pred ceEEEEEec--CHHH---------HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHH
Confidence 347888888 5432 5789999999999876 22111 1357889999999999
Q ss_pred HHHHHHhcCcccCCeEEEEEEcCchhhcc
Q 006608 605 FAAQRALHGRWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 605 ~~A~~~lng~~~~g~~i~v~~~~~~~~~~ 633 (639)
++||. .||..|+|..|=|.++.+....+
T Consensus 76 ~rAL~-~NG~ii~G~mIGV~Py~~~~ve~ 103 (132)
T 3p3d_A 76 VDALL-ENGAVFNGVLLGVIPYTKDAVER 103 (132)
T ss_dssp HHHHT-TTTCEETTEECEEEECCHHHHHH
T ss_pred HHHHH-hCCeEeCcEEEEEEECCHHHHHH
Confidence 99998 59999999999999988776654
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.02 E-value=0.0031 Score=49.83 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=45.4
Q ss_pred CCCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHc
Q 006608 350 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 413 (639)
Q Consensus 350 ~~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l 413 (639)
....+++| ++|..+...||.++|.+||.|. |.++.+ | .|||.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-T-----EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-C-----eEEEEecCHHHHHHHHHhc
Confidence 44566777 9999999999999999999653 444433 2 6999999999999999866
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.015 Score=46.54 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhcc-----CCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecCeEEEE
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEP-----FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 425 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~-----~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g~~i~v 425 (639)
...+|.|.|||..+.++.|.-+|++ -|+|..|.... +-|+|+|.+...|+.+|+.- .+.|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQA-DHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCC-cceecCeEEEE
Confidence 3579999999999999999999997 26899888764 36999999999999998742 36788999999
Q ss_pred EeeccCC
Q 006608 426 SAVTDQS 432 (639)
Q Consensus 426 ~~~~~~~ 432 (639)
....+..
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 7754443
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.80 E-value=0.005 Score=48.73 Aligned_cols=67 Identities=13% Similarity=0.207 Sum_probs=55.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC--CC-CcceEEEEEecCHHHHHHHHHHcCCceec
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TG-HCKGFGFVQFARLEDARNALNLNGQLEIV 419 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~--~~-~~~g~afVef~~~~~A~~A~~~l~g~~i~ 419 (639)
.+|.|.+||+.++++++.+.+.....+....+.... .+ ..-.-|||.|.+.+++......++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999999999988777776552 12 22356999999999999999999998774
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0074 Score=50.06 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=60.0
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcCCceecC-eEEEEEeecc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG-RAIKVSAVTD 430 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~g~~i~g-~~i~v~~~~~ 430 (639)
..-|.|-++|.. ....|...|++||.|........ ..+..|.|.+..+|.+||. .||..|+| ..|=|..+.+
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 567888899887 47789999999999998887322 3489999999999999998 68898985 6677777654
Q ss_pred CC
Q 006608 431 QS 432 (639)
Q Consensus 431 ~~ 432 (639)
+.
T Consensus 97 ~~ 98 (119)
T 1wwh_A 97 KN 98 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.63 E-value=0.0062 Score=48.20 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=54.1
Q ss_pred ccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCC--cccEEEEEEcccccHHHHHH-hcCCccC
Q 006608 249 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRR--SKGVGYVEFYDVMSVPMAIA-LSGQPLL 315 (639)
Q Consensus 249 ~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~--~~g~afV~f~~~~~a~~al~-~~~~~~~ 315 (639)
.+|.|++||+.+|++++.+.+..+..+.-......+.+.. .-.-|||.|.+.+++....+ ++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999999988776666655544322 33579999999999999996 9988774
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.58 E-value=0.0062 Score=48.14 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=42.9
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhc
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~ln 612 (639)
...+++| ++ |.+.. ..||.++|+.||.|. |.... ...|||-|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~F--P~ewK--------t~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-EC--CTTCC--------HHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eC--Chhhh--------hHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4457777 88 65544 799999999999543 33333 2579999999999999999775
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.36 E-value=0.0063 Score=48.25 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhc-CcccC
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH-GRWFA 617 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~ln-g~~~~ 617 (639)
..+|+| ++ |.+.. ..||..+|+.||.| .|.... ...|||-|.+++.|..|+..+. +..|.
T Consensus 6 ~HV~~l-~F--P~ewK--------t~Di~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~i~~~~~y~ 66 (101)
T 3ctr_A 6 DHVLHV-TF--PKEWK--------TSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVKIAVNTSKYAESYR 66 (101)
T ss_dssp EEEEEE-EC--CTTCC--------HHHHHHHTTTSEEE-EEEEEE--TTEEEEEEEEECHHHHHHHHHTTCSSCC
T ss_pred CeEEEE-eC--Chhhh--------hHHHHHHHhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHhcccCCceE
Confidence 346666 88 65544 79999999999943 344434 3579999999999999999875 33343
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.24 E-value=0.0048 Score=48.92 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=44.1
Q ss_pred ceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC
Q 006608 353 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 414 (639)
Q Consensus 353 ~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~ 414 (639)
.+++| ++|..+...||.++|.+||.| .|.++.+ | .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-C-----eEEEEecCHHHHHHHHHhcc
Confidence 45566 999999999999999999954 4555543 2 69999999999999998764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.74 E-value=0.033 Score=44.29 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=57.5
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCC--CCC-cceEEEEEecCHHHHHHHHHHcCCceecC-----eE
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TGH-CKGFGFVQFARLEDARNALNLNGQLEIVG-----RA 422 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~--~~~-~~g~afVef~~~~~A~~A~~~l~g~~i~g-----~~ 422 (639)
.+-+|.|..||+.+|++++.+.+.+.-.+....+.... .+. .-.-|||.|.+.++........+|..|-+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 35689999999999999999998887665444444331 111 12459999999999999999999987742 24
Q ss_pred EEEEeec
Q 006608 423 IKVSAVT 429 (639)
Q Consensus 423 i~v~~~~ 429 (639)
..|+||.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5556553
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.18 E-value=0.029 Score=47.17 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=55.5
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEE-EEeccCC-------------CC-CcceEEEEEecCHHHHHHHHHHcCCc
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLDE-------------TG-HCKGFGFVQFARLEDARNALNLNGQL 416 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~-v~i~~~~-------------~~-~~~g~afVef~~~~~A~~A~~~l~g~ 416 (639)
...|.|-+.|.. ....|...|++||.|.+ +.+.... .. ...++..|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 356778888764 55668899999999865 3222110 00 124689999999999999998 7889
Q ss_pred eecCeEEEEEeec
Q 006608 417 EIVGRAIKVSAVT 429 (639)
Q Consensus 417 ~i~g~~i~v~~~~ 429 (639)
.|+|..|=|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.71 E-value=0.12 Score=41.14 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=54.4
Q ss_pred cceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEec-------CCCccEEEEecchHHHHHHHHHhcCccc
Q 006608 544 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-------DSAGFVYLRFENTQSAFAAQRALHGRWF 616 (639)
Q Consensus 544 ~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~-------~~~g~afV~F~s~e~A~~A~~~lng~~~ 616 (639)
+-.|+|..| |..+| ++++.+.++..-.+....... ..-..|||.|.+.++...-...++|..|
T Consensus 9 ~~KvVIRrL--PP~Lt--------ee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRL--PPGLT--------KEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECC--CSCSC--------HHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCC--CCCCC--------HHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 348999999 88888 788777777665554333311 1236789999999999999999999997
Q ss_pred CC-----eEEEEEEcC
Q 006608 617 AG-----KMITATFMV 627 (639)
Q Consensus 617 ~g-----~~i~v~~~~ 627 (639)
-+ .+..|+||+
T Consensus 79 ~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 79 LDSKGLEYPAVVEFAP 94 (97)
T ss_dssp ECTTCCEEEEEEEECC
T ss_pred EeCCCCEeeeEEEecC
Confidence 32 256677765
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.24 E-value=0.04 Score=57.54 Aligned_cols=64 Identities=20% Similarity=0.166 Sum_probs=46.7
Q ss_pred cccccceeeccccccCHhHHHHHHhhcCCeeEEEEeecCCCCCcccEEEEEEcccccHHHHHHhcCCccC
Q 006608 246 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLL 315 (639)
Q Consensus 246 ~~~~~l~v~nLp~~~te~~l~~~f~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~~~~~~~~ 315 (639)
+..+.|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++...+....
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCCCCCC
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 456789997 79999999999999999999999887543 24999999999999988865444443
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.82 E-value=0.14 Score=53.51 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=41.5
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHH
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 411 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~ 411 (639)
.+.|+|. .|..+++.+|.++|+.||+|..+.+..+ .| -||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SS---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CC---eEEEEEeCCHHHHHHHHh
Confidence 4689996 7999999999999999999999988865 22 499999999999887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.82 E-value=7.9 Score=41.07 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=43.5
Q ss_pred CceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHcC
Q 006608 352 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 414 (639)
Q Consensus 352 ~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l~ 414 (639)
...++|+ +|..+...+|.++|+.||.+ .|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 3456665 88889999999999999965 4444432 269999999999999998775
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=70.93 E-value=10 Score=40.16 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhcC
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG 613 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng 613 (639)
...+|+|. + |.... ..+|.++|+.||.| .|.... ..+|||.|.+.+.|..++.+++.
T Consensus 439 R~~vl~v~-f--~~~~~--------~~~i~~~fs~fg~v-~V~wid--dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-F--PKEWK--------TSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-C--CTTCC--------HHHHHHHGGGGCCC-EEEECS--SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-C--CCCCC--------HHHHHHHHHhcCCE-EEEEEc--CCeEEEEECCHHHHHHHHHHHHh
Confidence 34577776 5 33323 68999999999965 344333 46799999999999999998863
No 403
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=52.14 E-value=39 Score=26.67 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=41.7
Q ss_pred eEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEE------EEecCCC-ccEEEEecchHHHHHHHH
Q 006608 546 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHI------FVEKDSA-GFVYLRFENTQSAFAAQR 609 (639)
Q Consensus 546 ~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v------~v~~~~~-g~afV~F~s~e~A~~A~~ 609 (639)
..+|.++ +.+|++.|.+..+.+...|.+||.-.-+ .+..+.. ..+.|+|.+.++|+.+..
T Consensus 6 ~Y~I~~~----~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~~eG~~~~~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 6 GYWIAQV----DVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEEEEE----EESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEE----EeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCceEEecCCcCeEEEEECCCHHHHHHHHc
Confidence 3445555 3568999999999999999999863322 1222222 466889999999987653
No 404
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=51.61 E-value=51 Score=25.68 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=38.8
Q ss_pred CCCchhhHhhHHHHHHHHhhhcCcEEEEE-----EecC--CCccEEEEecchHHHHHHHH
Q 006608 557 NETYEEFDMDIKEDVEGECSKFGKLKHIF-----VEKD--SAGFVYLRFENTQSAFAAQR 609 (639)
Q Consensus 557 ~~~~~~~~~~~~~dl~~~f~~~G~V~~v~-----v~~~--~~g~afV~F~s~e~A~~A~~ 609 (639)
+.+|++.|.+..+.+...|.+||.-.-+. +... ....+.|+|.+.+.|..+..
T Consensus 12 ~v~d~e~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 12 TPKDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp EECCHHHHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 45688999999999999999997522211 2222 34567999999999987764
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.59 E-value=1.2e+02 Score=22.97 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=44.4
Q ss_pred CCceEEEcCCCCcCCHHHHHHHhccCCCeEEEEeccCCCCCcceEEEEEecCHHHHHHHHHHc
Q 006608 351 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 413 (639)
Q Consensus 351 ~~~~l~v~nlp~~~~e~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afVef~~~~~A~~A~~~l 413 (639)
..+-|.|-|+|..+-..++.-.....|---.|..+. |.|.+.|.+.++..-|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHH
Confidence 356788999999998888877777777666666653 46999999999999898754
No 406
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=38.81 E-value=83 Score=26.73 Aligned_cols=53 Identities=9% Similarity=-0.008 Sum_probs=38.7
Q ss_pred CCCchhhHhhHHHHHHHHhhhcCcEEEE------EEecC----CCccEEEEecchHHHHHHHH
Q 006608 557 NETYEEFDMDIKEDVEGECSKFGKLKHI------FVEKD----SAGFVYLRFENTQSAFAAQR 609 (639)
Q Consensus 557 ~~~~~~~~~~~~~dl~~~f~~~G~V~~v------~v~~~----~~g~afV~F~s~e~A~~A~~ 609 (639)
.++|++.|......+..++.+||.-.-+ .+... ....++|+|-+.+.|..++.
T Consensus 44 ~vtd~e~y~~Y~~~~~~~l~~~GG~~l~rG~~~~~lEG~~~e~~~~~viieFPS~~aa~a~y~ 106 (143)
T 3hhl_A 44 ETTGAEAYAAYGRDSGPVSERLGGXVVWQGQFELMLIGPQDEHWDHVFIAEYPSVAAFVEMIR 106 (143)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEESCTTCCCSEEEEEEESCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEeecCCceeEECCCCCCCCeEEEEECCCHHHHHHHHc
Confidence 3689999999999999999999862211 12222 24578999999999887653
No 407
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=36.68 E-value=39 Score=28.35 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=53.7
Q ss_pred EecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEe----cCC----------------CccEEEEecchHHHHHH
Q 006608 548 LLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE----KDS----------------AGFVYLRFENTQSAFAA 607 (639)
Q Consensus 548 ~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~----~~~----------------~g~afV~F~s~e~A~~A 607 (639)
||-+++.|....+.+.|..+-+.-..+|..||.+..+..- ..+ .=+.+|+|-+.+...+|
T Consensus 27 YVDGFv~pVP~ankeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~ 106 (141)
T 2okq_A 27 YVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAA 106 (141)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHH
T ss_pred eEEEEEEECcHHHHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHH
Confidence 4445444555567899999999999999999998777541 111 13779999999998888
Q ss_pred HHHhc----------CcccCCeEEEE
Q 006608 608 QRALH----------GRWFAGKMITA 623 (639)
Q Consensus 608 ~~~ln----------g~~~~g~~i~v 623 (639)
.+++- ...|.|+.+..
T Consensus 107 ~~kvm~DPRm~~~~~~mPFDgkRMI~ 132 (141)
T 2okq_A 107 NQKMMSDPRMKEFGESMPFDGKRMIY 132 (141)
T ss_dssp HHHHHTCHHHHHTTSSCSSCTTTCEE
T ss_pred HHHhhcCccccccCCCCCCCcceeEe
Confidence 75532 23577776654
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=32.74 E-value=17 Score=27.05 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCc-----EEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcC
Q 006608 569 EDVEGECSKFGK-----LKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMV 627 (639)
Q Consensus 569 ~dl~~~f~~~G~-----V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~ 627 (639)
.+|..++..-+. |-.|.|. ..+.||+-.. ..|..++..|++..+.|+.|.|+.+.
T Consensus 16 ~~ivg~i~~~~gi~~~~IG~I~i~---d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 16 VDFVGTIAKIDGVSADDIGIITIM---DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp HHHHHHHHTSTTCCGGGEEEEEEC---SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred HHHHHHHHHccCCChhhccEEEEe---CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 555555554443 5566663 3478988665 45778999999999999999998764
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=30.54 E-value=1.1e+02 Score=23.71 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=32.4
Q ss_pred HHHHHHhhhcC-cEEEEEEecCCCccEEEEecchHHHHHHHHHhcCc
Q 006608 569 EDVEGECSKFG-KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR 614 (639)
Q Consensus 569 ~dl~~~f~~~G-~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~ 614 (639)
..|...+...| .|..+.++..-.|+.||++.-.++...++..+.|.
T Consensus 27 ~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 27 GLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 44444433333 26777887667899999999988888787766654
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.60 E-value=1.8e+02 Score=22.01 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=41.8
Q ss_pred CcceEEecccCCCCCCCchhhHhhHHHHHHHHhhhcCcEEEEEEecCCCccEEEEecchHHHHHHHHHhc
Q 006608 543 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 612 (639)
Q Consensus 543 ~~~~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f~~~G~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~ln 612 (639)
..+.|.|-|+ |..+. ..++.-...-.|---.|... .|.|.|.|.+.++..-|++.|-
T Consensus 11 qnclikiini--pqgtl--------kaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINI--PQGTL--------KAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECC--CTTCC--------HHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEec--CCCce--------eeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHH
Confidence 4567889999 65544 55665556666765566553 3689999999999999998874
No 411
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.91 E-value=38 Score=29.73 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=47.9
Q ss_pred eEEecccCCCCCCCchhhHhhHHHHHHHHh--hhcCcEEEEEE--ecCCCccEEEEecchHH----HHHHHHHhc----C
Q 006608 546 CLLLKNMFDPKNETYEEFDMDIKEDVEGEC--SKFGKLKHIFV--EKDSAGFVYLRFENTQS----AFAAQRALH----G 613 (639)
Q Consensus 546 ~l~V~Nl~~p~~~~~~~~~~~~~~dl~~~f--~~~G~V~~v~v--~~~~~g~afV~F~s~e~----A~~A~~~ln----g 613 (639)
+++|-|++.. +..|..+.-.-...|.+.| ..|..+....+ .....|+|.|.|.+--. |.+--+.+. |
T Consensus 14 mgIl~N~~t~-~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~~~G 92 (172)
T 4e8u_A 14 KGIVVNIPTT-KAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHG 92 (172)
T ss_dssp EEEEECCCCE-ECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHHHHHHTTCS
T ss_pred EEEEEecccc-ccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHHHHHHcCCC
Confidence 6788888331 2111111111247888877 89988765444 44457899999998433 332222221 1
Q ss_pred ------cccCCeEEEEEEcCchhhcc
Q 006608 614 ------RWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 614 ------~~~~g~~i~v~~~~~~~~~~ 633 (639)
..-.+..|.-=+|.++.|+.
T Consensus 93 K~dW~~~~~~~~~lyGW~Ar~dDy~s 118 (172)
T 4e8u_A 93 KKDWLKKDGPKLGLYGWIARADDYNG 118 (172)
T ss_dssp HHHHTCSSSCCCSCEEEECBHHHHHS
T ss_pred HHHHhhCCCCCCceEEEecccccccC
Confidence 11235556666666666654
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.65 E-value=91 Score=27.34 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=39.4
Q ss_pred ccceeeccccc---------cCHhHHHHHH--hhcCCeeEEEEeecCCCCCcccEEEEEEcccc-cHHHHHHh
Q 006608 249 RTVFAYQICLK---------ADERDVYEFF--SRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVM-SVPMAIAL 309 (639)
Q Consensus 249 ~~l~v~nLp~~---------~te~~l~~~f--~~~G~i~~~~i~~d~~~~~~~g~afV~f~~~~-~a~~al~~ 309 (639)
.+++|-|+|.. ....+|.+.| ..|.++. |..+.+.. .+.|+|.|.|..-- .-..|+.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHH
Confidence 46788888872 3457899977 8898866 55555443 48899999997543 33455543
No 413
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.51 E-value=1.8e+02 Score=21.11 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=35.5
Q ss_pred ccCHhHHHHHHhhcCC-----eeEEEEeecCCCCCcccEEEEEEcccccHHHHHH-hcCCccCCceeeeccc
Q 006608 259 KADERDVYEFFSRAGK-----VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 324 (639)
Q Consensus 259 ~~te~~l~~~f~~~G~-----i~~~~i~~d~~~~~~~g~afV~f~~~~~a~~al~-~~~~~~~g~~l~v~~~ 324 (639)
.+...+|..++..-+. |-.|.|. ..|.||+..... |..+++ +.+..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 3677788888875543 4455553 238999987655 556664 9999999999988654
No 414
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.51 E-value=56 Score=26.22 Aligned_cols=52 Identities=8% Similarity=0.169 Sum_probs=35.6
Q ss_pred cEEEEEEecCCCccEEEEecchHHHHHHHHHhcCcccCCeEEEEEEcCchhhcc
Q 006608 580 KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 633 (639)
Q Consensus 580 ~V~~v~v~~~~~g~afV~F~s~e~A~~A~~~lng~~~~g~~i~v~~~~~~~~~~ 633 (639)
.|.++.++..-+||.|||=.+..+...|+..+-+...+ .+...+++.+++-.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~~~--~~~~~lVpi~Em~~ 91 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLG--YWNQQMVPIKEMTD 91 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGGGG--SSCCEECCGGGTTG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccceecc--cccceEEcHHHHHH
Confidence 48888888888999999999988888888766554332 12234455555443
No 415
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=21.83 E-value=1.9e+02 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCc-EEEEEEe-cCCCccEEEEecchHHHHHHHHHhcCccc
Q 006608 568 KEDVEGECSKFGK-LKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWF 616 (639)
Q Consensus 568 ~~dl~~~f~~~G~-V~~v~v~-~~~~g~afV~F~s~e~A~~A~~~lng~~~ 616 (639)
...|...+...|- |..+... ...+..+.|.+++.+.|.++++. .|..+
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 6788888888874 6565543 44556778899999999999886 56543
Done!