BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006609
(639 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana
GN=SGS3 PE=1 SV=1
Length = 625
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 91/407 (22%), Positives = 165/407 (40%), Gaps = 59/407 (14%)
Query: 41 FTCPYCPKKRKQEYLYK--DLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGS 98
+ CP C Y LL HA G A+ H LA+ LEKDL+ G+
Sbjct: 226 WHCPACQNGPGAIDWYNLHPLLAHARTKG--------ARRVKLHRELAEVLEKDLQMRGA 277
Query: 99 PSKPVNE-GDPLTGCSHDEK---FVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRR 154
P E G DEK VWP I++N + ++ + +G +L + +
Sbjct: 278 SVIPCGEIYGQWKGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDK- 336
Query: 155 GFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSG 214
+ R + +GH G +V+ F G A + + W SG
Sbjct: 337 -YEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKRSMFSG 395
Query: 215 ----LYAWVARSDDYNLKNIIGDHLRKIG-DLKTISEMMEEEARK---QNLLVSNLTNMI 266
LY ++A D ++ N ++ +LK+ EM+ +E R+ N ++ N +
Sbjct: 396 GVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKL 455
Query: 267 EVKDKH-------LEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRI 319
++KH LE M E+ T+ +++ ++ ++ N E ++ A D F
Sbjct: 456 SKQNKHAKVLEESLEIMSEKLRRTAED-NRIVRQRTKMQHEQNRE----EMDAHDRF--- 507
Query: 320 FTD-----HEKL-----KLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRN 369
F D HE+ ++ Q++ ++ G++ + + +D + AEE+ +
Sbjct: 508 FMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEV------S 561
Query: 370 NSLQLASLVQQKADENVRKLAEDQKKQKEDL----HNRIIQLEKQLD 412
+ ++ ++ E L +DQ+K+ ED+ H I LEK+ D
Sbjct: 562 SFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFD 608
>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2
Length = 2027
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 114/264 (43%), Gaps = 60/264 (22%)
Query: 246 EMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEI 305
E M E R+Q + +E +++ LEE E+ + +S +K+RLL
Sbjct: 806 EEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHS------DKNRLL------- 852
Query: 306 KKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK- 364
+L R + + +HE+ KL+L+ Q EL+L +E E + T + R L ++ +
Sbjct: 853 ---ELETR--LREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAARAALESQLRQA 907
Query: 365 -----------------------------NAMRNNSLQLASLVQQKADENVRKLAEDQKK 395
+A+RN+ + L +E + +L ED
Sbjct: 908 KTELEETTAEAEEEIQALTAHRDEIQRKFDALRNSCTVITDL-----EEQLNQLTEDNA- 961
Query: 396 QKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVL---QKMETVLKD 452
+L+N+ L KQLD EI +L+ ++ ++ + ++++ Q ME +
Sbjct: 962 ---ELNNQNFYLSKQLDEASGANDEIVQLRSEVDHLRREITEREMQLTSQKQTMEALKTT 1018
Query: 453 LREKEGELDDLEALNQTLIIRERK 476
E ++ DLEALN L+ +ER+
Sbjct: 1019 CTMLEEQVMDLEALNDELLEKERQ 1042
>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus GN=Cit PE=1 SV=3
Length = 2055
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 60/264 (22%)
Query: 246 EMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEI 305
E M E R+Q + +E +++ LEE E+ + +S +K RLL
Sbjct: 847 EEMISELRQQKFYLETQAGKLEAQNRKLEEQLEKISHQDHS------DKSRLL------- 893
Query: 306 KKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEK- 364
+L R + + +HE+ KL+L+ Q EL+L +E E + T + R L ++ +
Sbjct: 894 ---ELETR--LREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAARAALESQLRQA 948
Query: 365 -----------------------------NAMRNNSLQLASLVQQKADENVRKLAEDQKK 395
+A+RN+ + L +E + +L ED
Sbjct: 949 KTELEETTAEAEEEIQALTAHRDEIQRKFDALRNSCTVITDL-----EEQLNQLTEDNA- 1002
Query: 396 QKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVL---QKMETVLKD 452
+L+N+ L KQLD EI +L+ ++ ++ + ++++ Q ME +
Sbjct: 1003 ---ELNNQNFYLSKQLDEASGANDEIVQLRSEVDHLRREITEREMQLTSQKQTMEALKTT 1059
Query: 453 LREKEGELDDLEALNQTLIIRERK 476
E ++ DLEALN L+ +ER+
Sbjct: 1060 CTMLEEQVLDLEALNDELLEKERQ 1083
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 117/242 (48%), Gaps = 48/242 (19%)
Query: 240 DLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRL-- 297
+L+ +++M EE+ + + + I+ K+K +E +K+ + +N + L +E RL
Sbjct: 1450 ELRQVTQMRTEESVRYKQSLDDAAKTIQDKNKEIERLKQLIDKETNDRKCLEDENARLQR 1509
Query: 298 ----LQSYN----EEIKKIQLSARDHFQRIFTDHEKL-------------------KLQL 330
LQ N E I K+++ ++ R+ D+E++ +LQL
Sbjct: 1510 VQYDLQKANSSATETINKLKVQEQE-LTRLRIDYERVSQERTVKDQDITRFQNSLKELQL 1568
Query: 331 ESQKKELELRGEELEKRETQNENDRKILAEEIE--KNAMRNNSLQLASLVQQKADEN-VR 387
+ QK E EL L++ +++ RK L EE+E + +++ ++++ +L QQ + V+
Sbjct: 1569 QKQKVEEEL--NRLKRTASEDSCKRKKLEEELEGMRRSLKEQAIKITNLTQQLEQASIVK 1626
Query: 388 KLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKME 447
K +ED +Q+ D+ L+ L KQ E+ RL + ++ ++LQ+ E
Sbjct: 1627 KRSEDDLRQQRDV------LDGHLREKQRTQEELRRLSSEVEALRR-------QLLQEQE 1673
Query: 448 TV 449
+V
Sbjct: 1674 SV 1675
>sp|E9Q1U1|CC171_MOUSE Coiled-coil domain-containing protein 171 OS=Mus musculus
GN=Ccdc171 PE=2 SV=1
Length = 1324
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 47/309 (15%)
Query: 277 KERFTETSNSVEKLMEEKDRLLQSYNEEIKKI---QLSARDHFQRIFTDHEKLKLQLESQ 333
+E++ E E +EE+D ++Q+ N+E + + + + Q I HE+ K +LES+
Sbjct: 140 QEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESR 199
Query: 334 KKELELRGE--------ELEKRETQ---NENDRKILAEEIEKNAMRNNSLQLASLVQQKA 382
+E L GE E E+RE Q E D + + + + + + + L++++
Sbjct: 200 VRETAL-GEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQT 258
Query: 383 D--ENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALE-----------IERLKGSLN 429
E + E +K+ E R+ +LE+ ++A++A LE I L+G+L
Sbjct: 259 SELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQ 318
Query: 430 VMKHMGDD--GDIEVL----QKMETVLKDLREKEGELDDLEALNQTLIIRE-----RKSN 478
V K + D+E++ +++E+ + REK+ + LN L+ RE +K N
Sbjct: 319 VEKASQAEAVADLEMIKNEFKEVESAYE--REKQNTQESCAKLN--LLEREYFSQNKKLN 374
Query: 479 DELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLW 538
+E++D +K +I+ LS R K GEL + + ++ + E E EL S+
Sbjct: 375 EEIEDQKKVIID----LSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESIL 430
Query: 539 EEYLKDPDW 547
+ W
Sbjct: 431 GSFSVSAQW 439
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,966,190
Number of Sequences: 539616
Number of extensions: 11011593
Number of successful extensions: 62260
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 3558
Number of HSP's that attempted gapping in prelim test: 47675
Number of HSP's gapped (non-prelim): 10764
length of query: 639
length of database: 191,569,459
effective HSP length: 124
effective length of query: 515
effective length of database: 124,657,075
effective search space: 64198393625
effective search space used: 64198393625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)