BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006610
(639 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 173/313 (55%), Gaps = 18/313 (5%)
Query: 337 SVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGAR 396
+ G+ + I T+ ALP + +D PT++ TF VN SP AG +G +T I R
Sbjct: 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTXTFQVNTSPFAGXEGXFVTSRNILER 61
Query: 397 LMSEAETNLAINV-IPGMAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENG 455
L E N+A+ V + + V GRGEL L ILIEN RREGFEL+VS P+V+ E+G
Sbjct: 62 LEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIENXRREGFELAVSRPEVIIXEEDG 121
Query: 456 VKLEPIEEVTIELLSLCIWYLSSLRFCFRLTRNMWGWLWKLSLTGK----------LRGL 505
EP E VTI++ + + L G L + GK RGL
Sbjct: 122 QLXEPFETVTIDVXE---EHQGGIXENIGL---RXGELXDXAPDGKGRVRXDFIXPSRGL 175
Query: 506 VGYRSVFSSDTRGTGFMHRAFLKYEKHRG-LLGNVRKGVLVSMGFGSITAHALMSLEPRG 564
+G+++ F + T G+G ++ F Y H G +G GVL++ G +AL +L+ RG
Sbjct: 176 IGFQTEFXTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVLIANAAGKALTNALFNLQERG 235
Query: 565 ILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGKDENVKLTPPRLMTLEEA 624
LF+ G E Y+G +IG HSRD DL VN ++ K+L+NVRA+G D+ LTPP + TLE+A
Sbjct: 236 RLFIGHGVEVYEGXVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVXTLEQA 295
Query: 625 IGYVASDELIEAS 637
+ ++ DEL+E +
Sbjct: 296 LEFIDDDELVEVT 308
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 119/429 (27%), Positives = 187/429 (43%), Gaps = 64/429 (14%)
Query: 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA---MDSISLERERGITIASKV 111
++ +RN +IAHVDHGK+TL DRLL GA E+ +D++ +ERERGIT+ +
Sbjct: 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQA 60
Query: 112 TGISWRENE-----LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAK 166
+ ++ + L+++DTPGH DF A+L++DA +G AQT K
Sbjct: 61 VRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWK 120
Query: 167 ALKYGLRPILLLNKVDRPAVSEERC-DEVESLVFDLFANLGATDEQLDFPVLYASAKEGW 225
A++ L I ++NK+D P+ +R ++E + LG E+ + ASAKEG
Sbjct: 121 AVEQDLVIIPVINKIDLPSADVDRVKKQIEEV-------LGLDPEE----AILASAKEGI 169
Query: 226 ASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTXXXX 285
+ ++L+AI+ +PPPK P + L+ D Y G +
Sbjct: 170 G--------------IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIF 215
Query: 286 XXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP- 344
DK+ L T E E G T M K D AGD+ +A K
Sbjct: 216 DGEVKPGDKIM-LMSTGKEYEVTEVGAQTPKMTK-------FDKLSAGDVGYIAASIKDV 267
Query: 345 ---SIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTH------LTGGKIG- 394
IG T+ + + T P P + G+ D T+ L I
Sbjct: 268 RDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGI----YPAEDTTYEELRDALEKYAIND 323
Query: 395 ARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKTE 453
A ++ E E++ P + + V G L + I+ E + RE G ++ + P V+Y+ +
Sbjct: 324 AAIVYEPESS------PALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVK 377
Query: 454 NGVKLEPIE 462
E IE
Sbjct: 378 KKFTDEVIE 386
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 182/424 (42%), Gaps = 64/424 (15%)
Query: 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA---MDSISLERERGITIASKVTGISW 116
+RN +IAHVDHGK+TL DRLL GA E+ +D++ +ERERGIT+ + +
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKXQAVRXFY 65
Query: 117 RENE-----LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYG 171
+ + L+++DTPGH DF A+L++DA +G AQT KA++
Sbjct: 66 KAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQD 125
Query: 172 LRPILLLNKVDRPAVSEERC-DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTF 230
L I ++NK+D P+ +R ++E + LG E+ + ASAKEG
Sbjct: 126 LVIIPVINKIDLPSADVDRVKKQIEEV-------LGLDPEE----AILASAKEGIG---- 170
Query: 231 TKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTXXXXXXXXX 290
+ ++L+AI+ +PPPK P + L+ D Y G +
Sbjct: 171 ----------IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVK 220
Query: 291 XXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP----SI 346
DK+ L T E E G T K D AGD+ +A K I
Sbjct: 221 PGDKIX-LXSTGKEYEVTEVGAQTPKXTK-------FDKLSAGDVGYIAASIKDVRDIRI 272
Query: 347 GHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTH------LTGGKIG-ARLMS 399
G T+ + + T P P + G+ D T+ L I A ++
Sbjct: 273 GDTITHAKNPTKEPVPGFQPAKPXVYAGI----YPAEDTTYEELRDALEKYAINDAAIVY 328
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKTENGVKL 458
E E++ P + + V G L I+ E + RE G ++ + P V+Y+ +
Sbjct: 329 EPESS------PALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYRVKKKFTD 382
Query: 459 EPIE 462
E IE
Sbjct: 383 EVIE 386
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
Query: 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHE---RAMDSISLERERGITIASKVTGISW 116
+RN ++IAH+DHGK+TL DR+++ CG E + +DS+ LERERGITI ++ + +
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDY 63
Query: 117 REN-----ELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYG 171
+ + +LN +DTPGH DF A+LVVDAG+G AQT A++
Sbjct: 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 172 LRPILLLNKVDRPAVSEER-CDEVESLV 198
L + +LNK+D PA ER +E+E +V
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIEDIV 151
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
Query: 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHE---RAMDSISLERERGITIASKVTGISW 116
+RN ++IAH+DHGK+TL DR+++ CG E + +DS+ LERERGITI ++ + +
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDY 63
Query: 117 REN-----ELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYG 171
+ + +LN +DTPGH DF A+LVVDAG+G AQT A++
Sbjct: 64 KASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMD 123
Query: 172 LRPILLLNKVDRPAVSEER-CDEVESLV 198
L + +LNK+D PA ER +E+E +V
Sbjct: 124 LEVVPVLNKIDLPAADPERVAEEIEDIV 151
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++DTPGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++DTPGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++DTPGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++DTPGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++DTPGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G A++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++D PGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA-------DIPHERAMDSISLERERGITIASKV 111
++ N+ V+AHVD GKTTL + LL GA D R D+ LER+RGITI + +
Sbjct: 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRT-DNTLLERQRGITIQTGI 59
Query: 112 TGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYG 171
T W ++N++DTPGH DF AIL++ A +G AQT+ + K G
Sbjct: 60 TSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 119
Query: 172 LRPILLLNKVDRPAV 186
+ I +NK+D+ +
Sbjct: 120 IPTIFFINKIDQNGI 134
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++D PGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARLAE 433
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E+ T +++ P T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 434 ESPT-FSVSTHPETGSTI-ISGMGELSLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-----ADIPHERA--MDSISLERERGITIA 108
D RLRN+ + AH+D GKTT +R+L G ++ HE A MD + ERERGITI
Sbjct: 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEV-HEGAATMDFMEQERERGITIT 66
Query: 109 SKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKAL 168
+ VT W+++ +N++D PGH DF AI+V D+ +G Q++ V +A
Sbjct: 67 AAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE 126
Query: 169 KYGLRPILLLNKVDR 183
KY + I NK+D+
Sbjct: 127 KYKVPRIAFANKMDK 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 267 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 326
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 327 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 379
Query: 341 MTKPSIGHTVANTEV-TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 380 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 432
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 433 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 484
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 36/202 (17%)
Query: 60 LRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERAMDSISLERERGITIASKVTGIS 115
+RN++VIAHVDHGK+TL D L+++ G A R D+ E+ERGITI S +
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLY 78
Query: 116 WRENE----------------LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQ 159
++ +N++D+PGH DF A++VVD EG Q
Sbjct: 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
Query: 160 TKFVLAKALKYGLRPILLLNKVDRP----AVSEE-------RCDEVESLVFDLFANLGAT 208
T+ VL +AL ++P++++NKVDR VS+E R E +++ +A+
Sbjct: 139 TETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLG 198
Query: 209 DEQLDFP----VLYASAKEGWA 226
D Q+ +P V + S GWA
Sbjct: 199 DVQV-YPARGTVAFGSGLHGWA 219
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 36/202 (17%)
Query: 60 LRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERAMDSISLERERGITIASKVTGIS 115
+RN++VIAHVDHGK+TL D L+++ G A R D+ E+ERGITI S +
Sbjct: 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLY 78
Query: 116 WRENE----------------LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQ 159
++ +N++D+PGH DF A++VVD EG Q
Sbjct: 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQ 138
Query: 160 TKFVLAKALKYGLRPILLLNKVDRP----AVSEE-------RCDEVESLVFDLFANLGAT 208
T+ VL +AL ++P++++NKVDR VS+E R E +++ +A+
Sbjct: 139 TETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLG 198
Query: 209 DEQLDFP----VLYASAKEGWA 226
D Q+ +P V + S GWA
Sbjct: 199 DVQV-YPARGTVAFGSGLHGWA 219
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 62 NVAVIAHVDHGKTTL---MDRLLRQCG-ADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL + ++L + G A +D+ ER RGITI + S
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177
D PGHAD+ ILVV A +GP+ QT+ L A + G+ +++
Sbjct: 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 124
Query: 178 -LNKVDRPAVSE-ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+NK D AV + E + VE + +L G E+ P++ SA + +DP
Sbjct: 125 YVNKAD--AVQDSEMVELVELEIRELLTEFGYKGEET--PIIVGSA----LCALEQRDPE 176
Query: 236 ADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
++++ +LLDA+ ++P P L+ PF + V
Sbjct: 177 LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A K+P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEEMHKNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A K+P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEEMHKNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A K+P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEEMHKNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 62 NVAVIAHVDHGKTTL---MDRLLRQCG-ADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL + ++L + G A +D+ ER RGITI + S
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 75
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177
D PGHAD+ ILVV A +GP QT+ L A + G+ +++
Sbjct: 76 ARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLARQIGVEHVVV 135
Query: 178 -LNKVDRPAVSE-ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+NK D AV + E + VE + +L G E+ P++ SA + +DP
Sbjct: 136 YVNKAD--AVQDSEXVELVELEIRELLTEFGYKGEET--PIIVGSA----LCALEQRDPE 187
Query: 236 ADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
++++ +LLDA+ ++P P L+ PF + V
Sbjct: 188 LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 219
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 73
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 74 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 133
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 134 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 188
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 189 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 226
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-----MDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ P+ +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD PGHAD+ AILVV A +GP+ QT+ + A + G+ I+
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP 235
+ +NKVD E D VE V DL +++ PV+ SA A ++P
Sbjct: 133 VFMNKVDM-VDDPELLDLVEMEVRDLLNQYEFPGDEV--PVIRGSAL--LALEQMHRNPK 187
Query: 236 AD------VRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
V + +LLDAI ++P P +D PF M V
Sbjct: 188 TRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPV 225
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERA--MDSISLERERGITIASKVT 112
+ RN+ +IAH+D GKTT +R+L G HE A MD + E++RGITI S T
Sbjct: 9 KTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 113 GISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL 172
+W + +N++DTPGH DF A+ V+DA G QT+ V +A YG+
Sbjct: 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 173 RPILLLNKVDRPAVSEERCDEVESLVFDLFAN-------LGATDE 210
I+ +NK+D+ + E V +L L AN +GA DE
Sbjct: 129 PRIVFVNKMDKLGANFEYS--VSTLHDRLQANAAPIQLPIGAEDE 171
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 244 LLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGRILTXX 283
+LDA+I ++P P KA A F L + D Y+G++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 284 XXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343
G + +S K E +V +L++ ID+ +GDI + G+
Sbjct: 330 VYSGTMTS-----GSYVKNSTKGKRE--RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKD 382
Query: 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAET 403
G T+ + L ++E P I ++ P + D +T + +L E T
Sbjct: 383 TGTGDTLCGEKNDIILESMEFPEPVIHLSV----EPKSKADQDKMTQALV--KLQEEDPT 436
Query: 404 NLAINVIPGMAETYEV--QGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
A ET +V G GEL L IL++ M++E E +V P V Y+
Sbjct: 437 FHAHT----DEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERA--MDSISLERERGITIASKVT 112
+ RN+ ++AH+D GKTT +R+L G HE A MD + E++RGITI S T
Sbjct: 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 113 GISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL 172
+W + +N++DTPGH DF A+ V+DA G QT+ V +A YG+
Sbjct: 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 173 RPILLLNKVDRPAVSEERCDEVESLVFDLFAN-------LGATDE 210
I+ +NK+D+ + E V +L L AN +GA DE
Sbjct: 129 PRIVFVNKMDKLGANFEYS--VSTLHDRLQANAAPIQLPIGAEDE 171
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 244 LLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGRILTXX 283
+LDA+I ++P P KA A F L + D Y+G++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 284 XXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343
G + +S K E +V +L++ ID+ +GDI + G+
Sbjct: 330 VYSGTMTS-----GSYVKNSTKGKRE--RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKD 382
Query: 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAET 403
G T+ + L ++E P I ++ P + D +T + +L E T
Sbjct: 383 TGTGDTLCGEKNDIILESMEFPEPVIHLSV----EPKSKADQDKMTQALV--KLQEEDPT 436
Query: 404 NLAINVIPGMAETYEV--QGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
A ET +V G GEL L IL++ M++E E +V P V Y+
Sbjct: 437 FHAHT----DEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERA--MDSISLERERGITIASKV 111
R RN+ + AH+D GKTT +R+L G + H+ A MD + E+ERGITI S
Sbjct: 7 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA 66
Query: 112 TGISW-------RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVL 164
T W + +N++DTPGH DF A++V A G Q++ V
Sbjct: 67 TTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 126
Query: 165 AKALKYGLRPILLLNKVDR 183
+A KY + I +NK+DR
Sbjct: 127 RQANKYKVPRIAFVNKMDR 145
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 46/239 (19%)
Query: 239 RNMSQLLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGR 278
+ + +LDA+I ++P P AS D PF L + D ++G
Sbjct: 272 KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGN 331
Query: 279 ILTXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338
+ D V L + E+ G++ ++ K I AGDI +
Sbjct: 332 LTFFRVYSGVVNSGDTV--LNSVKAARERF--GRIVQMHANKREE---IKEVRAGDIAAA 384
Query: 339 AGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGA--- 395
G+ + G T+ + + L +E P IS+ V A ++ L G++
Sbjct: 385 IGLKDVTTGDTLCDPDAPIILERMEFPEPVISI--AVEPKTKADQEKMGLALGRLAKEDP 442
Query: 396 --RLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
R+ ++ E+N I + G GEL L I+++ M+RE E +V P+V Y+
Sbjct: 443 SFRVWTDEESNQTI-----------IAGMGELHLDIIVDRMKREFNVEANVGKPQVAYR 490
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERA--MDSISLERERGITIASKV 111
R RN+ + AH+D GKTT +R+L G + H+ A MD + E+ERGITI S
Sbjct: 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA 67
Query: 112 TGISW-------RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVL 164
T W + +N++DTPGH DF A++V A G Q++ V
Sbjct: 68 TTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127
Query: 165 AKALKYGLRPILLLNKVDR 183
+A KY + I +NK+DR
Sbjct: 128 RQANKYKVPRIAFVNKMDR 146
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 46/239 (19%)
Query: 239 RNMSQLLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGR 278
+ + +LDA+I ++P P AS D PF L + D ++G
Sbjct: 273 KGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGN 332
Query: 279 ILTXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338
+ D V L + E+ G++ ++ K I AGDI +
Sbjct: 333 LTFFRVYSGVVNSGDTV--LNSVKAARERF--GRIVQMHANKREE---IKEVRAGDIAAA 385
Query: 339 AGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGA--- 395
G+ + G T+ + + L +E P IS+ V A ++ L G++
Sbjct: 386 IGLKDVTTGDTLCDPDAPIILERMEFPEPVISI--AVEPKTKADQEKMGLALGRLAKEDP 443
Query: 396 --RLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
R+ ++ E+N I + G GEL L I+++ M+RE E +V P+V Y+
Sbjct: 444 SFRVWTDEESNQTI-----------IAGMGELHLDIIVDRMKREFNVEANVGKPQVAYR 491
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERA--MDSISLERERGITIASKVT 112
+ RN+ +IAH+D GKTT +R+L G HE A MD + E++RGITI S T
Sbjct: 9 KTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 113 GISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL 172
+W + +N++DTPGH D A+ V+DA G QT+ V +A YG+
Sbjct: 69 TAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 173 RPILLLNKVDRPAVSEERCDEVESLVFDLFAN-------LGATDE 210
I+ +NK+D+ + E V +L L AN +GA DE
Sbjct: 129 PRIVFVNKMDKLGANFEYS--VSTLHDRLQANAAPIQLPIGAEDE 171
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 244 LLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGRILTXX 283
+LDA+I ++P P KA A F L + D Y+G++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 284 XXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343
G + +S K E +V +L++ ID+ +GDI + G+
Sbjct: 330 VYSGTMTS-----GSYVKNSTKGKRE--RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKD 382
Query: 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAET 403
G T+ + L ++E P I ++ P + D +T + +L E T
Sbjct: 383 TGTGDTLCGEKNDIILESMEFPEPVIHLSV----EPKSKADQDKMTQALV--KLQEEDPT 436
Query: 404 NLAINVIPGMAETYEV--QGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
A ET +V G GEL L IL++ M++E E +V P V Y+
Sbjct: 437 FHAHT----DEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERA--MDSISLERERGITIASKVT 112
R RN+ + AHVD GKTT +R+L G + H+ A D + E+ERGITI S
Sbjct: 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAV 71
Query: 113 GISWR-------ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLA 165
W+ +N++DTPGH DF A++V G Q++ V
Sbjct: 72 TTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWR 131
Query: 166 KALKYGLRPILLLNKVDR 183
+A KYG+ I+ +NK+DR
Sbjct: 132 QANKYGVPRIVYVNKMDR 149
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 100/245 (40%), Gaps = 49/245 (20%)
Query: 244 LLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGRILTXX 283
+LDA+I ++P P A + PF L + D ++G +
Sbjct: 281 VLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFAR 340
Query: 284 XXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343
D V + K ++ +V ++++ I AGDI ++ GM
Sbjct: 341 VYSGVLSSGDSV-------LNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKD 393
Query: 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGA-----RLM 398
+ G T+ + E L ++ P IS+ V A ++ + GK+ R+
Sbjct: 394 VTTGDTLCSIEKPIILERMDFPEPVISVA--VEPKTKADQEKMGIALGKLAQEDPSFRVK 451
Query: 399 SEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK---TEN 454
++ E+ I + G GEL L I+++ M+RE G E ++ P+V Y+ T++
Sbjct: 452 TDEESGQTI-----------ISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKD 500
Query: 455 GVKLE 459
V++E
Sbjct: 501 NVEIE 505
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERA--MDSISLERERGITIASKVT 112
+ RN+ ++AH+D GKTT +R+L G HE A MD + E++RGITI S T
Sbjct: 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 113 GISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL 172
+W + +N++DTPGH D A+ V+DA G QT+ V +A YG+
Sbjct: 69 TAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 173 RPILLLNKVDRPAVSEERCDEVESLVFDLFAN-------LGATDE 210
I+ +NK+D+ + E V +L L AN +GA DE
Sbjct: 129 PRIVFVNKMDKLGANFEYS--VSTLHDRLQANAAPIQLPIGAEDE 171
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 40/231 (17%)
Query: 244 LLDAIIRHVPPP--------------------KASLDAPFQMLVTMMEKDFYLGRILTXX 283
+LDA+I ++P P KA A F L + D Y+G++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFR 329
Query: 284 XXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343
G + +S K E +V +L++ ID+ +GDI + G+
Sbjct: 330 VYSGTMTS-----GSYVKNSTKGKRE--RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKD 382
Query: 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAET 403
G T+ + L ++E P I ++ P + D +T + +L E T
Sbjct: 383 TGTGDTLCGEKNDIILESMEFPEPVIHLSV----EPKSKADQDKMTQALV--KLQEEDPT 436
Query: 404 NLAINVIPGMAETYEV--QGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
A ET +V G GEL L IL++ M++E E +V P V Y+
Sbjct: 437 FHAHT----DEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYR 483
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 12/134 (8%)
Query: 64 AVIAHVDHGKTTLMDRLLR-----QCGADIPHERAM-----DSISLERERGITIASKVTG 113
A+I+H D GKTTL ++LL Q + +A D +++ERERGI++ + V
Sbjct: 35 AIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQ 94
Query: 114 ISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLR 173
+R+ +N++DTPGH DF A++V+DA +G AQT+ L +
Sbjct: 95 FPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMRAT 153
Query: 174 PIL-LLNKVDRPAV 186
P++ +NK+DR A+
Sbjct: 154 PVMTFVNKMDREAL 167
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 61 RNVAVIAHVDHGKTTLMDRLLR-----QCGADIPHERAM-----DSISLERERGITIASK 110
R A+I+H D GKTTL ++LL Q I +A D LE++RGI++ +
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 111 VTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKY 170
V +++ +N++DTPGHADF A+ V+DA +G +T L + +
Sbjct: 74 VXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRT-IKLXEVCRL 132
Query: 171 GLRPIL-LLNKVD---RPAVSEERCDEVESLV 198
PI +NK D RP++ E DE+ES++
Sbjct: 133 RHTPIXTFINKXDRDTRPSI--ELLDEIESIL 162
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 94/216 (43%), Gaps = 13/216 (6%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGAD-----IPHERAMDSISLERERGITIASKVTGISW 116
NV I HVDHGKTTL L A+ + +D ER RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITINTAHVEYET 72
Query: 117 RENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPIL 176
+ + VD GHAD+ AILVV A +G + QT+ + A + G+R I+
Sbjct: 73 AKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYIV 132
Query: 177 L-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASA----KEGWASSTFT 231
+ +NKVD E D VE V DL +++ V+ SA +E +
Sbjct: 133 VFMNKVD-MVDDRELLDLVEMEVRDLLNQYEFRGDEV--RVIRGSALLALEEMHKNRKTK 189
Query: 232 KDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
+ V + +LLDAI ++ +D F M V
Sbjct: 190 RGENEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRV 225
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCG-------------------ADIPHERAMDSISLERE 102
N+ VI HVDHGK+TL+ LL + G +D + ERE
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 103 RGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL----- 157
RGITI ++ ++D PGH DF AILVV A +G
Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 127
Query: 158 --AQTKFVLAKALKYGLRPILL-LNKVDRPAVS--EERCDEVESLVFDLFANLGATDEQL 212
QT+ L A G+ I++ +NK+D P V+ ++R + V S++ LG +++
Sbjct: 128 TEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKI 187
Query: 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
P + SA +G + + P N L++A + + PP +D P ++ V
Sbjct: 188 --PFIPVSAWKG--DNLIERSPNMPWYNGPTLVEA-LDQLQPPAKPVDKPLRIPV 237
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCG-------------------ADIPHERAMDSISLERE 102
N+ VI HVDHGK+TL+ LL + G +D + ERE
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 103 RGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL----- 157
RGITI ++ ++D PGH DF AILVV A +G
Sbjct: 71 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 130
Query: 158 --AQTKFVLAKALKYGLRPILL-LNKVDRPAVS--EERCDEVESLVFDLFANLGATDEQL 212
QT+ L A G+ I++ +NK+D P V+ ++R + V S++ LG +++
Sbjct: 131 TEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKI 190
Query: 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
P + SA +G + + P N L++A + + PP +D P ++ V
Sbjct: 191 --PFIPVSAWKG--DNLIERSPNMPWYNGPTLVEA-LDQLQPPAKPVDKPLRIPV 240
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 22/128 (17%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS 115
D RLRN+ + AH+D GKTT +R+L G IA VT
Sbjct: 3 DLKRLRNIGIAAHIDAGKTTTTERILYYTG--------------------RIA--VTTCF 40
Query: 116 WRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPI 175
W+++ +N++DTPGH DF AI+V D+ +G Q++ V +A KY + I
Sbjct: 41 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 100
Query: 176 LLLNKVDR 183
NK+D+
Sbjct: 101 AFANKMDK 108
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 94/233 (40%), Gaps = 35/233 (15%)
Query: 239 RNMSQLLDAIIRHVPPP------------------KASLDAPFQMLVTMMEKDFYLGRIL 280
+ + LLDA++ ++P P + P L + D Y+GR+
Sbjct: 234 KGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLT 293
Query: 281 TXXXXXXXXXXXDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340
V+ T K + +V +L++ ++ AGD+ +V G
Sbjct: 294 FIRVYSGTLTSGSYVYN-------TTKGRKERVARLLRMHANHREEVEELKAGDLGAVVG 346
Query: 341 MTKPSIGHTVANTEVT-TALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMS 399
+ + G T+ + L +IE+ P I + P D L+ + ARL +
Sbjct: 347 LKETITGDTLVGEDAPRVILESIEVPEPVIDVAI----EPKTKADQEKLS--QALARL-A 399
Query: 400 EAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYK 451
E + ++ P +T + G GEL L I+++ ++RE + +V P+V Y+
Sbjct: 400 EEDPTFRVSTHPETGQTI-ISGMGELHLEIIVDRLKREFKVDANVGKPQVAYR 451
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 72
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I++
Sbjct: 73 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 178 -LNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 133 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 182
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 183 EWEAKILELAGFLDS---YIPEPERAIDKPF 210
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 73
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I++
Sbjct: 74 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 178 -LNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 134 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 183
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 184 EWEAKILELAGFLDS---YIPEPERAIDKPF 211
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 72
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I++
Sbjct: 73 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 178 -LNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 133 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 182
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 183 EWEAKILELAGFLDS---YIPEPERAIDKPF 210
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 73
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL-RPIL 176
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I+
Sbjct: 74 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 133
Query: 177 LLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 134 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 183
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 184 EWEAKILELAGFLDS---YIPEPERAIDKPF 211
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 64
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL-RPIL 176
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I+
Sbjct: 65 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 124
Query: 177 LLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 125 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 174
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 175 EWEAKILELAGFLDS---YIPEPERAIDKPF 202
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 72
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I++
Sbjct: 73 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 132
Query: 178 -LNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 133 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 182
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 183 EWEAKILELAGFLDS---YIPEPERAIDKPF 210
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 27/196 (13%)
Query: 65 VIAHVDHGKTTLMDRLLRQCG-------------------ADIPHERAMDSISLERERGI 105
V+ HVD GK+TLM RLL + MD + ERERG+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 106 TIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL-------A 158
T++ + S +VD PGH DF AIL VD
Sbjct: 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 157
Query: 159 QTKFVLAKALKYGLRPILL-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217
QTK + A G+ +++ +NK+D S++R +E++S + ++G ++ +++ +
Sbjct: 158 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPI 217
Query: 218 YASAKEGWASSTFTKD 233
+ EG +T +
Sbjct: 218 SGFSGEGVYKIEYTDE 233
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENEL 121
N+ + H+DHGKTTL ++L + + H++ +S ++RGITI + +
Sbjct: 21 NLGIFGHIDHGKTTL-SKVLTEIASTSAHDKLPES----QKRGITIDIGFSAFKLENYRI 75
Query: 122 NMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKV 181
+VD PGHAD A++VVDA EGP QT + + + I+++ K
Sbjct: 76 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKS 135
Query: 182 DRPAVSE-ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTF------TKDP 234
D E +R + + + NL + ++ SAK G+ T +
Sbjct: 136 DNAGTEEIKRTEMIMKSILQSTHNLKNS------SIIPISAKTGFGVDELKNLIITTLNN 189
Query: 235 PADVRNMSQLLDAIIRHVPPPKAS 258
+RN + H P K +
Sbjct: 190 AEIIRNTESYFKMPLDHAFPIKGA 213
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 38/240 (15%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGA-------------------DIPHERAMDSISLERE 102
NV VI HVD GK+T L+ +CG + +D + ERE
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 103 RGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL----- 157
RGITI + + ++ ++D PGH DF AIL++ G G
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128
Query: 158 --AQTKFVLAKALKYGLRPILL-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214
QT+ A G+R +++ +NK+D E R E+ + +G + + F
Sbjct: 129 KDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPF 188
Query: 215 -PV--------LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQM 265
P+ + A+ W + K+ A V LL+A I + P D P ++
Sbjct: 189 VPISGWNGDNMIEATTNAPWYKG-WEKETKAGVVKGKTLLEA-IDAIEQPSRPTDKPLRL 246
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 357
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL-RPIL 176
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I+
Sbjct: 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 417
Query: 177 LLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 418 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 467
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 468 EWEAKILELAGFLDS---YIPEPERAIDKPF 495
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 22/211 (10%)
Query: 62 NVAVIAHVDHGKTTLMDR----LLRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
NV I HVDHGKTTL L + G +D+ E+ RGITI +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP 357
Query: 118 ENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL-RPIL 176
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I+
Sbjct: 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIV 417
Query: 177 LLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP 234
LNK CD V+ + + Q DFP G A D
Sbjct: 418 FLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDA 467
Query: 235 --PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
A + ++ LD+ ++P P+ ++D PF
Sbjct: 468 EWEAKILELAGFLDS---YIPEPERAIDKPF 495
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 27/196 (13%)
Query: 65 VIAHVDHGKTTLMDRLLRQCG-------------------ADIPHERAMDSISLERERGI 105
V+ HVD GK+TLM RLL + MD + ERERG+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 106 TIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL-------A 158
T++ + S +VD PGH DF AIL VD
Sbjct: 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDG 291
Query: 159 QTKFVLAKALKYGLRPILL-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217
QTK + A G+ +++ +NK+D S++R +E++S + ++G ++ +++ +
Sbjct: 292 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPI 351
Query: 218 YASAKEGWASSTFTKD 233
+ EG +T +
Sbjct: 352 SGFSGEGVYKIEYTDE 367
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 34/191 (17%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCG------ADIPHERA-------------MDSISLERE 102
N+ VI HVDHGK+TL+ RLL G E A +D + ERE
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 103 RGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL----- 157
RG+TI ++ ++D PGH DF AILVV A +G
Sbjct: 68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMS 127
Query: 158 --AQTK--FVLAKALKYGL-RPILLLNKVD--RPAVSEERCDEVESLVFDLFANLGATDE 210
QT+ +LAK + GL + I+ +NK+D P E+R E+ V + G
Sbjct: 128 VEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTN 185
Query: 211 QLDF-PVLYAS 220
++ F PV+ S
Sbjct: 186 KVRFVPVVAPS 196
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 58 GRLRNVAVIAHVDHGKTTLMDRLLR-----QCGADIP------HERAMDSISLERERGIT 106
+ R A+I+H D GKTT+ +++L Q + H ++ D + +E++RGI+
Sbjct: 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKS-DWMEMEKQRGIS 69
Query: 107 IASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAK 166
I + V + + +N++DTPGH DF ++V+DA +G +T+ L +
Sbjct: 70 ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-KLME 128
Query: 167 ALKYGLRPIL-LLNKVDRPAVSE-ERCDEVES 196
+ PIL +NK+DR E DEVE+
Sbjct: 129 VTRLRDTPILTFMNKLDRDIRDPMELLDEVEN 160
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 58 GRLRNVAVIAHVDHGKTTLMDRLLR-----QCGADIP------HERAMDSISLERERGIT 106
+ R A+I+H D GKTT+ +++L Q + H ++ D + +E++RGI+
Sbjct: 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKS-DWMEMEKQRGIS 69
Query: 107 IASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAK 166
I + V + + +N++DTPGH DF ++V+DA +G +T+ L +
Sbjct: 70 ITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-KLME 128
Query: 167 ALKYGLRPIL-LLNKVDRPAVSE-ERCDEVES 196
+ PIL +NK+DR E DEVE+
Sbjct: 129 VTRLRDTPILTFMNKLDRDIRDPMELLDEVEN 160
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELN 122
V ++ HVDHGKTTL+D+L + A AM++ + + G + S +G ++
Sbjct: 7 VTIMGHVDHGKTTLLDKLRKTQVA------AMEAGGITQHIGAFLVSLPSG-----EKIT 55
Query: 123 MVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182
+DTPGHA F ILVV A +G + QT + A + +L +NK D
Sbjct: 56 FLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCD 115
Query: 183 RPAVSEERCDEVESLVFDLFANLGATDEQ 211
+ E+ + E L +D+ D Q
Sbjct: 116 KAEADPEKVKK-ELLAYDVVCEDYGGDVQ 143
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 80/207 (38%), Gaps = 28/207 (13%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENEL 121
NV I HVDHGKTTL + + RGITI +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT----------VLAKTYGGAARGITINTSHVEYDTPTRHY 62
Query: 122 NMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGL-RPILLLNK 180
VD PGHAD+ AILVV A +GP+ QT+ + + G+ I+ LNK
Sbjct: 63 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNK 122
Query: 181 VDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDP--PA 236
CD V+ + + Q DFP G A D A
Sbjct: 123 ----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEA 172
Query: 237 DVRNMSQLLDAIIRHVPPPKASLDAPF 263
+ ++ LD+ ++P P+ ++D PF
Sbjct: 173 KILELAGFLDS---YIPEPERAIDKPF 196
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 15/162 (9%)
Query: 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELN 122
V ++ HVDHGKTTL+D I H + ++ + GIT ++ + ++
Sbjct: 11 VTIMGHVDHGKTTLLDA--------IRHSK----VTEQEAGGITQHIGAYQVTVNDKKIT 58
Query: 123 MVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182
+DTPGH F ILVV A +G + QT + A + I+ +NK+D
Sbjct: 59 FLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMD 118
Query: 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEG 224
+P + +R + E + ++L D F L A KEG
Sbjct: 119 KPEANPDRVMQ-ELMEYNLVPEEWGGDTI--FCKLSAKTKEG 157
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 27/196 (13%)
Query: 65 VIAHVDHGKTTLMDRLLRQCG-------------------ADIPHERAMDSISLERERGI 105
V+ HVD GK+TL RLL + D + ERERG+
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 106 TIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL-------A 158
T++ + S +VD PGH DF AIL VD
Sbjct: 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFESGFDLDG 157
Query: 159 QTKFVLAKALKYGLRPILL-LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217
QTK A G+ +++ NK D S++R +E++S + ++G ++ +++ +
Sbjct: 158 QTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPI 217
Query: 218 YASAKEGWASSTFTKD 233
+ EG +T +
Sbjct: 218 SGFSGEGVYKIEYTDE 233
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 63 VAVIAHVDHGKTTLMDRLL------RQCGADIPHERAMDSISLERERGITIASKVTGISW 116
V+V+ HVDHGKTTL+D + R+ G H A + I ++ GI + S
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE-IPMDVIEGIC-GDFLKKFSI 65
Query: 117 REN--ELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRP 174
RE L +DTPGH F AIL+VD EG QT+ L Y
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF 125
Query: 175 ILLLNKVDR 183
++ NK+DR
Sbjct: 126 VVAANKIDR 134
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCG-------ADIPHERA------------MDS 96
+P + ++ V HVD GK+T++ R++ + G + +E A +D+
Sbjct: 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDT 232
Query: 97 ISLERERGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGP 156
ER RG+T+ T + + D PGH DF A+LVVD+ +
Sbjct: 233 TEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN 292
Query: 157 L-------AQTK--FVLAKALKYGLRPILL-LNKVDRPAVSEERCDEVESLVFDLFANL 205
QT+ L +AL G+ I++ +NK+D + SE+R E++++V D +
Sbjct: 293 FERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKM 349
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 63 VAVIAHVDHGKTTLMDRLL------RQCGADIPHERAMDSISLERERGITIASKVTGISW 116
V+V+ HVDHGKTTL+D + R+ G H A + I + GI + S
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE-IPXDVIEGIC-GDFLKKFSI 65
Query: 117 REN--ELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRP 174
RE L +DTPGH F AIL+VD EG QT+ L Y
Sbjct: 66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPF 125
Query: 175 ILLLNKVDR 183
++ NK+DR
Sbjct: 126 VVAANKIDR 134
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 29/192 (15%)
Query: 62 NVAVIAHVDHGKTTL------------------MDRLLRQCGADIPH-ERAMDSISLERE 102
N+ I HVD GK+TL ++R ++ G + + A+DS S ERE
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 103 RGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL----- 157
+G T+ +++D PGH + +LV+ A G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFE 164
Query: 158 --AQTKFVLAKALKYGLRP-ILLLNKVDRPAV--SEERCDEVESLVFDLFANLGATDEQL 212
QT+ A G+ ++++NK+D P+V SEER E + + + +
Sbjct: 165 RGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKT 224
Query: 213 DFPVLYASAKEG 224
D + SA G
Sbjct: 225 DVKYMPVSAYTG 236
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 68 HVDHGKTTLMDRLLRQC---------------------GADIPHERAMDSISLERERGIT 106
+VD GK+TL+ RLL G D+ +D + ERE+GIT
Sbjct: 32 NVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGIT 91
Query: 107 IASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAK 166
I S + + + DTPGH + AI++VDA G QT+
Sbjct: 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRHSYI 151
Query: 167 ALKYGLRPILL-LNKVDRPAVSEERCDEVES 196
A G++ I++ +NK D E + +++
Sbjct: 152 ASLLGIKHIVVAINKXDLNGFDERVFESIKA 182
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCG-ADI----PHER--------------AMDSISLERE 102
NV I HVD GK+T+ +++ G D +ER A+D+ ER+
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 103 RGITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPL----- 157
+G T+ + ++D PGH F A+LV+ A +G
Sbjct: 79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFE 138
Query: 158 --AQTKFVLAKALKYGLRP-ILLLNKVDRPAV--SEERCDEVESLVFDLFANLG 206
QT+ A G++ I+L+NK+D P V S ER +E + + +G
Sbjct: 139 KGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG 192
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA------MDSISLERERGITIASKVTG 113
+R VA++ H GKTTL + LL + GA R D + T+ + V
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAP 68
Query: 114 ISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLR 173
+ +R + + ++D PG+ DF A++ V A G T+ A + GL
Sbjct: 69 LLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP 128
Query: 174 PILLLNKVDR 183
++++ K+D+
Sbjct: 129 RMVVVTKLDK 138
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELN 122
V ++ HVDHGKT+L++ + R+ S E GIT + +
Sbjct: 7 VTIMGHVDHGKTSLLEYI-----------RSTKVASGE-AGGITQHIGAYHVETENGMIT 54
Query: 123 MVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182
+DTPGHA F +LVV A +G + QT + A + ++ +NK+D
Sbjct: 55 FLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKID 114
Query: 183 RPAVSEERC 191
+P +R
Sbjct: 115 KPEADPDRV 123
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 18/165 (10%)
Query: 104 GITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFV 163
GITI + VD PGHAD+ AILVV A +GP+ QT+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 164 LAKALKYGL-RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYAS 220
+ + G+ I+ LNK CD V+ + + Q DFP
Sbjct: 61 ILLGRQVGVPYIIVFLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTP 110
Query: 221 AKEGWASSTFTKDP--PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
G A D A + ++ LD+ ++P P+ ++D PF
Sbjct: 111 IVRGSALKALEGDAEWEAKILELAGFLDS---YIPEPERAIDKPF 152
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 87/231 (37%), Gaps = 54/231 (23%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITI-------------- 107
N+ ++ HVDHGKTTL L D+ S E RGITI
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGVW---------TDTHSEELRRGITIKIGFADAEIRRCSN 63
Query: 108 -----ASKVTGISWRENE----LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGE-GPL 157
S + E E ++ +D+PGH AILV+ A E P
Sbjct: 64 CGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPR 123
Query: 158 AQTKFVLAKALKYGLRPILLL-NKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216
QT+ L G + I++ NK++ V +E+ E + + A + P+
Sbjct: 124 PQTREHLMALQIIGQKNIIIAQNKIE--LVDKEKALENYRQIKEFIKGTVAENA----PI 177
Query: 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
+ SA G N+ L+ AI +P PK + P +MLV
Sbjct: 178 IPISALHG--------------ANIDVLVKAIEEFIPTPKRDSNKPPKMLV 214
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 18/165 (10%)
Query: 104 GITIASKVTGISWRENELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEGPLAQTKFV 163
GITI + VD PGHAD+ AILVV A +GP+ QT+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 164 LAKALKYGL-RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYAS 220
+ + G+ I+ LNK CD V+ + + Q DFP
Sbjct: 61 ILLGRQVGVPYIIVFLNK----------CDMVDDEELLELVEMEVRELLSQYDFPGDDTP 110
Query: 221 AKEGWASSTFTKDP--PADVRNMSQLLDAIIRHVPPPKASLDAPF 263
G A D A + ++ LD+ ++P P+ ++D PF
Sbjct: 111 IVRGSALKALEGDAEWEAKILELAGFLDS---YIPEPERAIDKPF 152
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 86/231 (37%), Gaps = 54/231 (23%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITI-------------- 107
N+ ++ HVDHGKTTL L D+ S E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVW---------TDTHSEELRRGITIKIGFADAEIRRCPN 62
Query: 108 -----ASKVTGISWRENE----LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGE-GPL 157
S V E E ++ +D PGH AILV+ A E P
Sbjct: 63 CGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR 122
Query: 158 AQTKFVLAKALKYGLRPILLL-NKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216
QT+ L G + I++ NK++ V +E+ E + + A + P+
Sbjct: 123 PQTREHLMALQIIGQKNIIIAQNKIE--LVDKEKALENYRQIKEFIEGTVAENA----PI 176
Query: 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
+ SA G N+ L+ AI +P PK + P +MLV
Sbjct: 177 IPISALHGA--------------NIDVLVKAIEDFIPTPKRDPNKPPKMLV 213
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 86/231 (37%), Gaps = 54/231 (23%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITI-------------- 107
N+ ++ HVDHGKTTL L D+ S E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGVW---------TDTHSEELRRGITIKIGFADAEIRRCPN 62
Query: 108 -----ASKVTGISWRENE----LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGE-GPL 157
S V E E ++ +D PGH AILV+ A E P
Sbjct: 63 CGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPR 122
Query: 158 AQTKFVLAKALKYGLRPILLL-NKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216
QT+ L G + I++ NK++ V +E+ E + + A + P+
Sbjct: 123 PQTREHLMALQIIGQKNIIIAQNKIE--LVDKEKALENYRQIKEFIEGTVAENA----PI 176
Query: 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
+ SA G N+ L+ AI +P PK + P +MLV
Sbjct: 177 IPISALHGA--------------NIDVLVKAIEDFIPTPKRDPNKPPKMLV 213
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 58/233 (24%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--- 118
N+ ++ HVDHGKT+L L D S E RGI+I R+
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGVW---------TDRHSEELRRGISIRLGYADCEIRKCPQ 60
Query: 119 --------------------NELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGE-GPL 157
++ VD+PGH AILV+ A E P
Sbjct: 61 CGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQ 120
Query: 158 AQTKFVLAKALKYGLRPILLL-NKVD--RPAVSEERCDEVESLVFDLFANLGATDEQLDF 214
QTK L G+ I+++ NK+D +EE ++++ V A +
Sbjct: 121 PQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAE--------NA 172
Query: 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
P++ SA N+ LL AI +P PK DA +M V
Sbjct: 173 PIIPISAHHE--------------ANIDVLLKAIQDFIPTPKRDPDATPRMYV 211
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 87/231 (37%), Gaps = 54/231 (23%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITI-------------- 107
N+ + HVDHGKTTL L D+ S E RGITI
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGVW---------TDTHSEELRRGITIKIGFADAEIRRCPN 62
Query: 108 -----ASKVTGISWRENE----LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGE-GPL 157
S V E E ++ +D PGH AILV+ A E P
Sbjct: 63 CGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPR 122
Query: 158 AQTKFVLAKALKYGLRPILLL-NKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216
QT+ L G + I++ NK++ V +E+ E + + A + P+
Sbjct: 123 PQTREHLXALQIIGQKNIIIAQNKIE--LVDKEKALENYRQIKEFIEGTVAENA----PI 176
Query: 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267
+ SA G N+ L+ AI +P PK + P + LV
Sbjct: 177 IPISALHGA--------------NIDVLVKAIEDFIPTPKRDPNKPPKXLV 213
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 25/152 (16%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHE--RAMDSISL---ERERGITIASK-----V 111
N+ V+ HVDHGKTTL+ + + E R M +I L E G+ + K V
Sbjct: 11 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGM-TIKLGYAETNIGVCESCKKPEAYV 69
Query: 112 TGISWRE----------NELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEG-PLAQT 160
T S + ++ +D PGH AILVV A E P QT
Sbjct: 70 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 129
Query: 161 KFVLAKALKYGLRPILLL-NKVDRPAVSEERC 191
+ G++ ++++ NKVD VS+E
Sbjct: 130 REHFVALGIIGVKNLIIVQNKVD--VVSKEEA 159
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 62 NVAVIAHVDHGKTTLMDRLL-----RQCGADIPHERAMDSISLERERGITIASKVTGISW 116
N+ V+ HVDHGKTTL+ + ++ G + +S + K G
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCG--- 66
Query: 117 RENE------LNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEG-PLAQTKFVLAKALK 169
++E ++ +D PGH AILVV A E P QT+
Sbjct: 67 SDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI 126
Query: 170 YGLRPILLL-NKVDRPAVSEERC 191
G++ ++++ NKVD VS+E
Sbjct: 127 IGVKNLIIVQNKVD--VVSKEEA 147
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 25/152 (16%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHE--RAMDSISL---ERERGITIASK-----V 111
N+ V+ HVDHGKTTL+ + + E R M +I L E G+ + K V
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGM-TIKLGYAETNIGVCESCKKPEAYV 68
Query: 112 TGISWRE----------NELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEG-PLAQT 160
T S + ++ +D PGH AILVV A E P QT
Sbjct: 69 TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128
Query: 161 KFVLAKALKYGLRPILLL-NKVDRPAVSEERC 191
+ G++ ++++ NKVD VS+E
Sbjct: 129 REHFVALGIIGVKNLIIVQNKVD--VVSKEEA 158
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISL---ERERGITIASK-----VTG 113
N+ V+ HVDHGKTTL+ + + + + ++I L E G+ + K VT
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTS----KHSEETIKLGYAETNIGVCESCKKPEAYVTE 65
Query: 114 ISWRE----------NELNMVDTPGHADFXXXXXXXXXXXXXAILVVDAGEG-PLAQTKF 162
S + ++ +D PGH AILVV A E P QT+
Sbjct: 66 PSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE 125
Query: 163 VLAKALKYGLRPILLL-NKVDRPAVSEERC 191
G++ ++++ NKVD VS+E
Sbjct: 126 HFVALGIIGVKNLIIVQNKVD--VVSKEEA 153
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 60 LRNVAVIAHVDHGKTTLMDRL--LRQCGADIPHERAMDSISLERERGITIASKVTGISWR 117
L+ VA++ + + GKTT+ + L LRQ + P G+T+ K + +R
Sbjct: 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWP--------------GVTVEKKEGIMEYR 48
Query: 118 ENELNMVDTPG 128
E E +VD PG
Sbjct: 49 EKEFLVVDLPG 59
>pdb|1O60|A Chain A, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|B Chain B, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|C Chain C, Crystal Structure Of Kdo-8-Phosphate Synthase
pdb|1O60|D Chain D, Crystal Structure Of Kdo-8-Phosphate Synthase
Length = 292
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 390 GGKIGARLMSEAETNLAINVIPGMAETYEVQGRGE----LQLGI-------LIENMRREG 438
G + G ++ E + + +I + E Y+ Q + +QL L+E + G
Sbjct: 73 GXEEGLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAXAKTG 132
Query: 439 FELSVSPPKVMYKTENGVKLEPIEEVTIELLSLC 472
++V P+ + ++ G +E IEE + + LC
Sbjct: 133 AVINVKKPQFLSPSQXGNIVEKIEECGNDKIILC 166
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 62 NVAVIAHVDHGKTTL 76
NV I HVDHGKTTL
Sbjct: 6 NVGTIGHVDHGKTTL 20
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,025,938
Number of Sequences: 62578
Number of extensions: 670974
Number of successful extensions: 1772
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1566
Number of HSP's gapped (non-prelim): 120
length of query: 639
length of database: 14,973,337
effective HSP length: 105
effective length of query: 534
effective length of database: 8,402,647
effective search space: 4487013498
effective search space used: 4487013498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)