Query 006610
Match_columns 639
No_of_seqs 587 out of 4281
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 11:55:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1217 TypA Predicted membran 100.0 4E-172 8E-177 1322.7 49.0 568 58-639 3-582 (603)
2 TIGR01394 TypA_BipA GTP-bindin 100.0 2E-146 5E-151 1230.8 59.4 566 60-639 1-578 (594)
3 PRK10218 GTP-binding protein; 100.0 1E-143 2E-148 1207.3 59.3 568 58-639 3-583 (607)
4 KOG0462 Elongation factor-type 100.0 1.5E-99 3E-104 797.9 33.7 542 54-639 54-635 (650)
5 COG0480 FusA Translation elong 100.0 2.1E-85 4.7E-90 739.1 46.7 444 57-536 7-683 (697)
6 KOG0465 Mitochondrial elongati 100.0 1.7E-84 3.7E-89 690.0 25.5 446 56-536 35-713 (721)
7 PRK00007 elongation factor G; 100.0 2.1E-78 4.7E-83 697.7 47.5 447 54-536 4-683 (693)
8 TIGR01393 lepA GTP-binding pro 100.0 1.2E-77 2.5E-82 676.5 48.9 430 59-532 2-478 (595)
9 PRK05433 GTP-binding protein L 100.0 8.4E-78 1.8E-82 678.2 47.4 432 57-532 4-481 (600)
10 TIGR00484 EF-G translation elo 100.0 4E-77 8.7E-82 688.0 48.5 448 53-536 3-680 (689)
11 PRK12739 elongation factor G; 100.0 4.5E-77 9.7E-82 687.2 45.3 447 56-538 4-682 (691)
12 PRK07560 elongation factor EF- 100.0 8.8E-76 1.9E-80 679.6 42.6 461 57-536 17-705 (731)
13 PRK13351 elongation factor G; 100.0 1.3E-74 2.9E-79 668.4 46.5 445 56-536 4-680 (687)
14 TIGR00490 aEF-2 translation el 100.0 2.2E-72 4.7E-77 649.7 39.5 461 57-536 16-703 (720)
15 PRK12740 elongation factor G; 100.0 1.2E-71 2.6E-76 642.8 42.9 435 66-536 1-662 (668)
16 COG0481 LepA Membrane GTPase L 100.0 1.1E-71 2.5E-76 578.0 36.9 434 55-532 4-484 (603)
17 PLN00116 translation elongatio 100.0 4.6E-71 1E-75 647.0 43.7 468 57-536 16-809 (843)
18 PTZ00416 elongation factor 2; 100.0 9.8E-70 2.1E-74 634.6 44.7 468 57-537 16-803 (836)
19 PRK00741 prfC peptide chain re 100.0 1.6E-61 3.5E-66 537.7 39.0 362 58-454 8-472 (526)
20 KOG0464 Elongation factor G [T 100.0 6.2E-64 1.4E-68 510.0 12.0 444 58-534 35-739 (753)
21 TIGR00503 prfC peptide chain r 100.0 4.2E-60 9.1E-65 526.4 38.6 360 58-452 9-470 (527)
22 KOG0469 Elongation factor 2 [T 100.0 5.6E-60 1.2E-64 490.3 25.8 469 57-537 16-809 (842)
23 KOG0468 U5 snRNP-specific prot 100.0 2.3E-50 5E-55 430.3 33.0 469 56-536 124-910 (971)
24 COG4108 PrfC Peptide chain rel 100.0 2.8E-50 6.2E-55 415.7 25.9 356 59-449 11-468 (528)
25 KOG0467 Translation elongation 100.0 5.3E-47 1.1E-51 411.9 26.2 468 55-534 4-830 (887)
26 COG5256 TEF1 Translation elong 100.0 4.3E-41 9.4E-46 348.8 28.8 285 58-358 5-320 (428)
27 CHL00071 tufA elongation facto 100.0 1.2E-39 2.5E-44 355.2 31.5 286 58-355 10-308 (409)
28 PLN00043 elongation factor 1-a 100.0 7.1E-40 1.5E-44 358.8 29.8 281 58-354 5-318 (447)
29 PTZ00141 elongation factor 1- 100.0 6.1E-40 1.3E-44 359.6 29.0 281 58-354 5-318 (446)
30 PRK12736 elongation factor Tu; 100.0 1.3E-39 2.9E-44 353.1 30.6 279 58-354 10-297 (394)
31 PLN03126 Elongation factor Tu; 100.0 6.4E-39 1.4E-43 352.6 32.1 286 58-355 79-377 (478)
32 PRK12735 elongation factor Tu; 100.0 1.2E-38 2.7E-43 345.8 31.5 281 58-354 10-299 (396)
33 TIGR00485 EF-Tu translation el 100.0 1E-38 2.3E-43 346.5 30.9 279 58-354 10-297 (394)
34 PRK00049 elongation factor Tu; 100.0 1.5E-38 3.2E-43 344.9 31.6 281 58-354 10-299 (396)
35 PLN03127 Elongation factor Tu; 100.0 3.9E-38 8.4E-43 344.8 32.5 287 54-354 55-350 (447)
36 PRK12317 elongation factor 1-a 100.0 2.5E-38 5.4E-43 347.3 28.8 282 58-355 4-311 (425)
37 TIGR02034 CysN sulfate adenyly 100.0 1.1E-37 2.3E-42 339.3 27.6 277 61-355 1-301 (406)
38 KOG0460 Mitochondrial translat 100.0 1.8E-38 3.9E-43 318.4 18.8 286 59-360 53-347 (449)
39 TIGR00483 EF-1_alpha translati 100.0 1.8E-37 3.9E-42 340.4 28.2 282 58-355 5-313 (426)
40 COG0050 TufB GTPases - transla 100.0 5.1E-38 1.1E-42 309.9 20.7 283 58-358 10-301 (394)
41 PRK05124 cysN sulfate adenylyl 100.0 1.4E-36 2.9E-41 335.6 29.3 281 59-356 26-330 (474)
42 PRK05306 infB translation init 100.0 2.2E-36 4.9E-41 346.8 31.8 339 57-452 287-673 (787)
43 PTZ00327 eukaryotic translatio 100.0 9.1E-36 2E-40 325.5 27.5 263 58-355 32-352 (460)
44 TIGR00487 IF-2 translation ini 100.0 5.9E-35 1.3E-39 328.3 33.0 299 59-411 86-419 (587)
45 PRK10512 selenocysteinyl-tRNA- 100.0 1.7E-34 3.8E-39 326.8 28.7 252 62-354 2-260 (614)
46 PRK05506 bifunctional sulfate 100.0 1.9E-34 4.1E-39 330.6 28.7 278 60-355 24-325 (632)
47 PRK04000 translation initiatio 100.0 4.4E-34 9.6E-39 311.0 27.6 266 58-356 7-320 (411)
48 TIGR03680 eif2g_arch translati 100.0 1.1E-33 2.3E-38 308.1 27.8 264 59-355 3-314 (406)
49 CHL00189 infB translation init 100.0 3.8E-33 8.2E-38 317.4 26.5 250 58-353 242-501 (742)
50 TIGR00475 selB selenocysteine- 100.0 9.1E-33 2E-37 312.0 28.3 253 62-353 2-260 (581)
51 KOG0458 Elongation factor 1 al 100.0 6.8E-33 1.5E-37 296.9 25.4 284 55-352 172-488 (603)
52 COG2895 CysN GTPases - Sulfate 100.0 1.8E-32 4E-37 277.2 23.4 297 59-381 5-328 (431)
53 COG3276 SelB Selenocysteine-sp 100.0 1.3E-31 2.8E-36 280.3 22.7 250 62-354 2-256 (447)
54 PF00009 GTP_EFTU: Elongation 100.0 1.6E-31 3.5E-36 261.3 17.8 178 59-254 2-188 (188)
55 cd01885 EF2 EF2 (for archaea a 100.0 2.4E-31 5.1E-36 265.6 19.2 189 61-255 1-222 (222)
56 KOG1145 Mitochondrial translat 100.0 6.9E-31 1.5E-35 278.0 20.6 248 58-351 151-405 (683)
57 cd01884 EF_Tu EF-Tu subfamily. 100.0 8.7E-30 1.9E-34 250.1 20.1 189 60-255 2-195 (195)
58 cd01886 EF-G Elongation factor 100.0 1.5E-29 3.3E-34 260.3 19.9 129 62-190 1-135 (270)
59 COG0532 InfB Translation initi 100.0 4.1E-29 8.9E-34 268.0 22.7 251 59-354 4-262 (509)
60 COG5257 GCD11 Translation init 100.0 1.4E-28 3.1E-33 246.0 24.8 259 59-350 9-310 (415)
61 cd04168 TetM_like Tet(M)-like 100.0 3E-29 6.4E-34 253.8 19.3 177 62-255 1-237 (237)
62 cd04169 RF3 RF3 subfamily. Pe 100.0 6.2E-29 1.3E-33 255.5 21.0 131 59-189 1-141 (267)
63 PRK04004 translation initiatio 100.0 3E-28 6.5E-33 274.7 27.9 264 59-353 5-328 (586)
64 COG5258 GTPBP1 GTPase [General 100.0 2E-27 4.3E-32 242.3 23.7 277 56-356 113-439 (527)
65 KOG0461 Selenocysteine-specifi 100.0 4.5E-28 9.9E-33 243.6 18.8 250 60-338 7-267 (522)
66 TIGR00491 aIF-2 translation in 100.0 7.6E-27 1.6E-31 262.3 27.6 263 59-352 3-325 (590)
67 cd01891 TypA_BipA TypA (tyrosi 100.0 4.2E-27 9.1E-32 231.2 21.0 190 59-255 1-194 (194)
68 KOG0459 Polypeptide release fa 100.0 4.4E-28 9.6E-33 248.8 14.1 285 57-357 76-393 (501)
69 cd04166 CysN_ATPS CysN_ATPS su 100.0 4E-27 8.6E-32 234.1 18.9 186 62-255 1-207 (208)
70 cd01883 EF1_alpha Eukaryotic e 99.9 4.8E-27 1E-31 235.3 17.8 186 62-252 1-216 (219)
71 cd04167 Snu114p Snu114p subfam 99.9 6.2E-26 1.3E-30 226.3 17.8 189 61-255 1-213 (213)
72 cd01888 eIF2_gamma eIF2-gamma 99.9 3.3E-25 7.1E-30 219.5 17.5 167 61-256 1-202 (203)
73 cd04170 EF-G_bact Elongation f 99.9 4.7E-25 1E-29 227.7 18.9 128 62-189 1-134 (268)
74 cd01890 LepA LepA subfamily. 99.9 2.2E-24 4.7E-29 208.2 20.0 171 61-255 1-179 (179)
75 PRK14845 translation initiatio 99.9 9.5E-24 2E-28 247.4 25.8 261 61-353 463-783 (1049)
76 cd01889 SelB_euk SelB subfamil 99.9 5.4E-24 1.2E-28 208.7 17.7 171 61-256 1-189 (192)
77 cd04165 GTPBP1_like GTPBP1-lik 99.9 4.9E-23 1.1E-27 206.5 18.0 177 62-255 1-224 (224)
78 cd00881 GTP_translation_factor 99.9 5.8E-22 1.3E-26 192.2 19.7 178 62-255 1-189 (189)
79 cd04171 SelB SelB subfamily. 99.9 2.1E-21 4.6E-26 183.8 18.5 160 62-250 2-163 (164)
80 COG1160 Predicted GTPases [Gen 99.8 4.1E-20 8.9E-25 196.0 20.8 216 61-331 4-235 (444)
81 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4E-20 8.8E-25 176.1 17.9 162 61-252 1-165 (168)
82 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.1E-19 6.8E-24 170.0 15.3 161 62-250 1-166 (167)
83 cd01894 EngA1 EngA1 subfamily. 99.8 5.6E-19 1.2E-23 165.7 16.0 149 64-252 1-157 (157)
84 TIGR03594 GTPase_EngA ribosome 99.8 7.5E-19 1.6E-23 193.6 18.8 162 59-252 171-343 (429)
85 KOG1144 Translation initiation 99.8 2.3E-19 4.9E-24 195.5 12.9 218 59-302 474-739 (1064)
86 PRK00093 GTP-binding protein D 99.8 1.7E-18 3.6E-23 191.2 19.9 159 59-250 172-341 (435)
87 cd01895 EngA2 EngA2 subfamily. 99.8 2.7E-18 5.9E-23 163.4 18.6 161 60-251 2-173 (174)
88 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.6E-23 183.9 17.6 161 59-250 177-348 (444)
89 PF02421 FeoB_N: Ferrous iron 99.8 6.3E-19 1.4E-23 165.5 11.8 147 62-248 2-156 (156)
90 KOG0466 Translation initiation 99.8 3.7E-19 8E-24 177.1 10.6 249 57-338 35-336 (466)
91 TIGR00436 era GTP-binding prot 99.8 4.9E-18 1.1E-22 175.6 18.9 157 62-255 2-166 (270)
92 cd01864 Rab19 Rab19 subfamily. 99.8 4.6E-18 1E-22 162.0 16.2 158 59-252 2-165 (165)
93 PRK15494 era GTPase Era; Provi 99.8 5.7E-18 1.2E-22 180.3 17.9 160 58-254 50-217 (339)
94 KOG0463 GTP-binding protein GP 99.8 2.4E-18 5.2E-23 175.3 14.0 270 61-354 134-456 (641)
95 TIGR03594 GTPase_EngA ribosome 99.8 6.3E-18 1.4E-22 186.3 18.4 154 62-255 1-162 (429)
96 cd04124 RabL2 RabL2 subfamily. 99.8 8E-18 1.7E-22 160.1 15.6 154 62-253 2-158 (161)
97 COG1159 Era GTPase [General fu 99.8 9E-18 2E-22 169.5 16.7 161 60-255 6-174 (298)
98 cd01898 Obg Obg subfamily. Th 99.8 1.4E-17 3E-22 159.0 16.8 153 62-251 2-169 (170)
99 PRK03003 GTP-binding protein D 99.8 1.8E-17 3.9E-22 184.4 19.8 156 59-254 37-200 (472)
100 KOG1143 Predicted translation 99.8 1.5E-17 3.2E-22 169.6 17.0 283 61-377 168-504 (591)
101 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.8E-17 6E-22 155.8 17.3 156 61-252 3-163 (164)
102 cd01879 FeoB Ferrous iron tran 99.8 8.8E-18 1.9E-22 158.1 13.3 148 65-252 1-156 (158)
103 PRK03003 GTP-binding protein D 99.8 1.7E-17 3.7E-22 184.6 17.5 161 59-252 210-381 (472)
104 cd04154 Arl2 Arl2 subfamily. 99.7 2.4E-17 5.3E-22 158.5 15.9 155 59-250 13-172 (173)
105 cd04157 Arl6 Arl6 subfamily. 99.7 2.3E-17 4.9E-22 156.1 15.3 153 62-250 1-161 (162)
106 cd01897 NOG NOG1 is a nucleola 99.7 3.8E-17 8.2E-22 155.8 16.4 153 61-252 1-167 (168)
107 cd01860 Rab5_related Rab5-rela 99.7 3.5E-17 7.7E-22 155.1 15.6 158 61-253 2-163 (163)
108 smart00173 RAS Ras subfamily o 99.7 3.9E-17 8.5E-22 155.1 15.5 156 62-253 2-162 (164)
109 cd04151 Arl1 Arl1 subfamily. 99.7 3.6E-17 7.9E-22 154.7 15.0 152 62-250 1-157 (158)
110 cd04113 Rab4 Rab4 subfamily. 99.7 3.7E-17 7.9E-22 154.9 14.9 155 62-251 2-160 (161)
111 cd04114 Rab30 Rab30 subfamily. 99.7 5.9E-17 1.3E-21 154.6 15.9 157 59-252 6-168 (169)
112 smart00175 RAB Rab subfamily o 99.7 5.6E-17 1.2E-21 153.6 15.5 155 62-253 2-162 (164)
113 cd04106 Rab23_lke Rab23-like s 99.7 6.3E-17 1.4E-21 153.2 15.8 153 62-251 2-161 (162)
114 cd04138 H_N_K_Ras_like H-Ras/N 99.7 6.8E-17 1.5E-21 152.4 15.9 155 61-252 2-161 (162)
115 cd01861 Rab6 Rab6 subfamily. 99.7 9.2E-17 2E-21 151.9 16.7 155 61-252 1-161 (161)
116 PRK00093 GTP-binding protein D 99.7 9.4E-17 2E-21 177.3 19.3 154 61-254 2-163 (435)
117 COG2229 Predicted GTPase [Gene 99.7 1E-16 2.2E-21 150.5 16.3 169 60-255 10-181 (187)
118 cd04164 trmE TrmE (MnmE, ThdF, 99.7 7.7E-17 1.7E-21 151.0 15.4 147 61-252 2-156 (157)
119 cd04140 ARHI_like ARHI subfami 99.7 1.4E-16 3E-21 152.0 16.8 155 61-251 2-163 (165)
120 cd01867 Rab8_Rab10_Rab13_like 99.7 1.2E-16 2.6E-21 152.7 16.3 157 59-252 2-164 (167)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.7 6.9E-17 1.5E-21 152.5 14.4 152 62-250 1-157 (158)
122 PRK00089 era GTPase Era; Revie 99.7 1.8E-16 3.8E-21 165.9 18.9 160 60-254 5-172 (292)
123 TIGR03598 GTPase_YsxC ribosome 99.7 1.2E-16 2.6E-21 154.8 16.3 151 55-225 13-176 (179)
124 PRK09518 bifunctional cytidyla 99.7 1.3E-16 2.8E-21 185.7 19.3 157 58-254 273-437 (712)
125 cd04119 RJL RJL (RabJ-Like) su 99.7 1.3E-16 2.8E-21 151.5 15.9 156 62-252 2-166 (168)
126 cd00879 Sar1 Sar1 subfamily. 99.7 8.5E-17 1.9E-21 157.0 14.9 158 60-252 19-190 (190)
127 cd03690 Tet_II Tet_II: This su 99.7 2.8E-17 6E-22 139.4 9.8 85 260-352 1-85 (85)
128 PTZ00369 Ras-like protein; Pro 99.7 1.4E-16 3E-21 155.8 16.3 158 60-253 5-167 (189)
129 cd01865 Rab3 Rab3 subfamily. 99.7 1.2E-16 2.7E-21 152.3 15.4 158 61-253 2-163 (165)
130 PRK00454 engB GTP-binding prot 99.7 2.8E-16 6E-21 154.0 18.2 168 50-253 14-194 (196)
131 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 1.4E-16 2.9E-21 155.1 15.8 161 61-253 4-170 (183)
132 cd04122 Rab14 Rab14 subfamily. 99.7 1.3E-16 2.9E-21 152.2 15.3 158 60-252 2-163 (166)
133 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1.5E-16 3.3E-21 151.5 15.6 156 60-252 2-163 (166)
134 cd04136 Rap_like Rap-like subf 99.7 2.2E-16 4.7E-21 149.5 16.4 156 61-252 2-162 (163)
135 cd04158 ARD1 ARD1 subfamily. 99.7 2E-16 4.4E-21 151.7 16.3 157 62-254 1-162 (169)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 2.3E-16 5E-21 152.1 16.5 153 60-250 15-173 (174)
137 PRK09518 bifunctional cytidyla 99.7 1.1E-16 2.4E-21 186.3 16.9 163 59-254 449-622 (712)
138 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.7E-16 3.7E-21 152.0 15.3 161 62-250 1-166 (167)
139 cd01866 Rab2 Rab2 subfamily. 99.7 2.1E-16 4.5E-21 151.3 15.8 158 60-252 4-165 (168)
140 cd04163 Era Era subfamily. Er 99.7 4E-16 8.7E-21 147.0 17.5 158 60-252 3-168 (168)
141 cd01863 Rab18 Rab18 subfamily. 99.7 1.5E-16 3.2E-21 150.6 14.5 154 62-251 2-160 (161)
142 cd01868 Rab11_like Rab11-like. 99.7 2.5E-16 5.5E-21 149.8 16.2 156 60-252 3-164 (165)
143 PRK15467 ethanolamine utilizat 99.7 1E-16 2.2E-21 152.3 13.4 144 61-255 2-149 (158)
144 PRK04213 GTP-binding protein; 99.7 3.2E-16 6.9E-21 154.5 17.3 160 59-256 8-195 (201)
145 cd04175 Rap1 Rap1 subgroup. T 99.7 3.2E-16 6.9E-21 149.0 16.6 156 61-252 2-162 (164)
146 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 2.2E-16 4.7E-21 155.9 15.9 158 62-253 2-168 (201)
147 TIGR00231 small_GTP small GTP- 99.7 9.7E-17 2.1E-21 149.2 12.2 149 61-248 2-159 (161)
148 cd04149 Arf6 Arf6 subfamily. 99.7 3.4E-16 7.5E-21 150.1 16.3 154 60-250 9-167 (168)
149 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.9E-16 8.4E-21 148.3 16.4 152 62-250 2-158 (159)
150 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.3E-16 7.2E-21 150.2 16.0 159 60-252 2-168 (170)
151 cd04116 Rab9 Rab9 subfamily. 99.7 3.8E-16 8.2E-21 149.4 16.4 158 59-251 4-169 (170)
152 cd01862 Rab7 Rab7 subfamily. 99.7 2.3E-16 5.1E-21 150.7 14.9 155 62-252 2-166 (172)
153 cd04139 RalA_RalB RalA/RalB su 99.7 2.6E-16 5.6E-21 148.9 15.0 156 61-252 1-161 (164)
154 cd01893 Miro1 Miro1 subfamily. 99.7 4.6E-16 1E-20 148.6 16.7 158 62-252 2-163 (166)
155 PLN03118 Rab family protein; P 99.7 4.5E-16 9.8E-21 154.9 17.2 159 60-254 14-178 (211)
156 PRK09554 feoB ferrous iron tra 99.7 1.8E-16 4E-21 183.9 16.5 154 60-253 3-168 (772)
157 cd04120 Rab12 Rab12 subfamily. 99.7 3.9E-16 8.5E-21 154.3 16.4 155 62-252 2-162 (202)
158 cd00877 Ran Ran (Ras-related n 99.7 2.6E-16 5.7E-21 150.6 14.5 156 61-253 1-159 (166)
159 cd04127 Rab27A Rab27a subfamil 99.7 3.8E-16 8.3E-21 150.8 15.6 159 59-252 3-176 (180)
160 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 3.4E-16 7.4E-21 150.8 15.2 157 61-253 3-164 (172)
161 smart00177 ARF ARF-like small 99.7 7.3E-16 1.6E-20 148.8 17.0 155 60-252 13-173 (175)
162 cd00154 Rab Rab family. Rab G 99.7 5.4E-16 1.2E-20 144.9 15.5 153 62-249 2-158 (159)
163 cd04147 Ras_dva Ras-dva subfam 99.7 3E-16 6.6E-21 154.6 14.4 157 62-255 1-165 (198)
164 cd04144 Ras2 Ras2 subfamily. 99.7 5E-16 1.1E-20 152.0 15.8 156 62-253 1-163 (190)
165 smart00838 EFG_C Elongation fa 99.7 2.1E-17 4.6E-22 140.2 5.1 77 457-536 1-83 (85)
166 smart00178 SAR Sar1p-like memb 99.7 7.7E-16 1.7E-20 150.0 16.7 160 59-251 16-183 (184)
167 cd04176 Rap2 Rap2 subgroup. T 99.7 8.5E-16 1.8E-20 145.8 16.6 156 61-252 2-162 (163)
168 PLN00223 ADP-ribosylation fact 99.7 8.2E-16 1.8E-20 149.5 16.7 155 60-252 17-177 (181)
169 cd01878 HflX HflX subfamily. 99.7 5.5E-16 1.2E-20 153.2 15.5 152 59-252 40-204 (204)
170 PLN03071 GTP-binding nuclear p 99.7 7.9E-16 1.7E-20 154.2 16.8 159 58-253 11-172 (219)
171 cd04134 Rho3 Rho3 subfamily. 99.7 5.4E-16 1.2E-20 151.7 15.1 165 61-256 1-177 (189)
172 cd04156 ARLTS1 ARLTS1 subfamil 99.7 7.6E-16 1.7E-20 145.6 15.6 153 62-250 1-159 (160)
173 cd04112 Rab26 Rab26 subfamily. 99.7 5.7E-16 1.2E-20 151.7 15.2 160 62-255 2-165 (191)
174 cd04121 Rab40 Rab40 subfamily. 99.7 9.9E-16 2.1E-20 149.9 16.8 157 59-252 5-166 (189)
175 cd04177 RSR1 RSR1 subgroup. R 99.7 9.1E-16 2E-20 146.8 16.2 158 61-253 2-164 (168)
176 cd04110 Rab35 Rab35 subfamily. 99.7 8.3E-16 1.8E-20 151.6 16.4 158 59-253 5-167 (199)
177 cd04123 Rab21 Rab21 subfamily. 99.7 8.5E-16 1.9E-20 144.9 15.7 154 62-252 2-161 (162)
178 cd04135 Tc10 TC10 subfamily. 99.7 4.1E-16 8.9E-21 149.7 13.6 159 62-252 2-173 (174)
179 cd04159 Arl10_like Arl10-like 99.7 8.2E-16 1.8E-20 143.9 15.4 152 63-250 2-158 (159)
180 cd00880 Era_like Era (E. coli 99.7 1.4E-15 3E-20 141.5 16.9 154 65-251 1-162 (163)
181 cd04097 mtEFG1_C mtEFG1_C: C-t 99.7 4.5E-17 9.7E-22 135.9 6.0 72 459-533 1-78 (78)
182 PRK05291 trmE tRNA modificatio 99.7 3.9E-16 8.4E-21 172.2 15.0 149 60-254 215-371 (449)
183 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 8.2E-16 1.8E-20 146.9 15.2 159 63-250 2-163 (164)
184 cd04146 RERG_RasL11_like RERG/ 99.7 5.2E-16 1.1E-20 147.8 13.8 156 62-252 1-163 (165)
185 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 7.7E-16 1.7E-20 148.0 15.0 159 62-253 2-165 (170)
186 cd04092 mtEFG2_II_like mtEFG2_ 99.7 2.3E-16 4.9E-21 133.3 9.9 83 263-352 1-83 (83)
187 cd04142 RRP22 RRP22 subfamily. 99.7 9.4E-16 2E-20 151.2 15.8 156 62-253 2-174 (198)
188 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 1.4E-15 3.1E-20 143.4 15.7 164 59-257 21-189 (221)
189 cd04155 Arl3 Arl3 subfamily. 99.7 7.8E-16 1.7E-20 147.6 14.5 153 60-250 14-172 (173)
190 cd04118 Rab24 Rab24 subfamily. 99.7 7.8E-16 1.7E-20 150.7 14.7 160 62-252 2-165 (193)
191 cd03709 lepA_C lepA_C: This fa 99.7 4.6E-17 1E-21 136.4 5.1 71 459-532 1-79 (80)
192 PRK12299 obgE GTPase CgtA; Rev 99.7 1.4E-15 3.1E-20 161.1 17.4 159 59-254 157-329 (335)
193 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.8E-15 3.9E-20 147.2 16.5 160 62-253 2-166 (182)
194 PLN03108 Rab family protein; P 99.7 1.9E-15 4E-20 150.5 16.8 159 59-252 5-167 (210)
195 PLN03110 Rab GTPase; Provision 99.7 1.7E-15 3.7E-20 151.4 16.6 162 58-254 10-175 (216)
196 PF00679 EFG_C: Elongation fac 99.7 3.8E-17 8.3E-22 139.8 3.9 79 456-537 1-86 (89)
197 cd03711 Tet_C Tet_C: C-terminu 99.7 8.6E-17 1.9E-21 134.2 5.7 72 459-533 1-78 (78)
198 PTZ00133 ADP-ribosylation fact 99.7 2.3E-15 5.1E-20 146.4 16.5 155 60-252 17-177 (182)
199 cd04137 RheB Rheb (Ras Homolog 99.7 1.8E-15 3.8E-20 146.3 15.3 154 61-252 2-162 (180)
200 cd00157 Rho Rho (Ras homology) 99.7 1.6E-15 3.5E-20 144.7 14.7 158 62-250 2-170 (171)
201 cd04132 Rho4_like Rho4-like su 99.7 1.4E-15 3.1E-20 148.0 14.5 162 61-253 1-167 (187)
202 cd00876 Ras Ras family. The R 99.7 2E-15 4.4E-20 142.0 15.0 155 62-252 1-160 (160)
203 cd04133 Rop_like Rop subfamily 99.7 1.8E-15 3.9E-20 146.4 14.9 163 61-254 2-174 (176)
204 cd01871 Rac1_like Rac1-like su 99.7 1.4E-15 3E-20 146.8 14.2 159 61-251 2-173 (174)
205 cd01875 RhoG RhoG subfamily. 99.7 3.8E-15 8.3E-20 146.0 17.4 164 61-256 4-180 (191)
206 cd04109 Rab28 Rab28 subfamily. 99.7 2.3E-15 5E-20 150.4 16.1 155 62-253 2-166 (215)
207 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.4E-15 3E-20 144.1 13.5 159 57-252 6-171 (205)
208 TIGR02729 Obg_CgtA Obg family 99.6 2.3E-15 4.9E-20 159.4 16.6 156 59-252 156-328 (329)
209 TIGR02528 EutP ethanolamine ut 99.6 8.4E-16 1.8E-20 142.6 11.6 136 62-249 2-141 (142)
210 COG0218 Predicted GTPase [Gene 99.6 5.3E-15 1.1E-19 142.1 17.2 169 52-253 16-197 (200)
211 cd04098 eEF2_C_snRNP eEF2_C_sn 99.6 1.3E-16 2.8E-21 133.6 5.4 72 459-533 1-80 (80)
212 cd01874 Cdc42 Cdc42 subfamily. 99.6 2.1E-15 4.6E-20 145.7 14.6 157 61-251 2-173 (175)
213 cd03710 BipA_TypA_C BipA_TypA_ 99.6 1.9E-16 4.1E-21 132.4 6.1 71 459-532 1-78 (79)
214 cd04126 Rab20 Rab20 subfamily. 99.6 3.4E-15 7.3E-20 149.4 16.3 162 62-252 2-189 (220)
215 PRK12298 obgE GTPase CgtA; Rev 99.6 3.1E-15 6.7E-20 161.6 17.0 159 60-254 159-334 (390)
216 smart00176 RAN Ran (Ras-relate 99.6 1.7E-15 3.7E-20 149.5 13.6 151 66-253 1-154 (200)
217 cd03689 RF3_II RF3_II: this su 99.6 8.3E-16 1.8E-20 130.2 9.7 81 265-352 1-84 (85)
218 smart00174 RHO Rho (Ras homolo 99.6 2.8E-15 6.1E-20 143.8 14.7 158 63-252 1-171 (174)
219 cd01881 Obg_like The Obg-like 99.6 2.7E-15 5.8E-20 143.8 14.5 150 65-251 1-175 (176)
220 KOG0078 GTP-binding protein SE 99.6 5.3E-15 1.2E-19 142.1 16.2 163 56-253 8-174 (207)
221 cd04143 Rhes_like Rhes_like su 99.6 3.9E-15 8.5E-20 151.7 16.4 160 62-256 2-174 (247)
222 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.1E-15 6.7E-20 164.2 16.7 150 59-252 202-359 (442)
223 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 5.1E-15 1.1E-19 144.0 16.4 161 59-251 4-178 (182)
224 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.1E-15 2.3E-20 129.2 9.8 83 263-352 1-83 (83)
225 cd04096 eEF2_snRNP_like_C eEF2 99.6 2.3E-16 5E-21 132.3 5.6 72 459-533 1-80 (80)
226 cd04101 RabL4 RabL4 (Rab-like4 99.6 4.9E-15 1.1E-19 140.6 15.5 158 62-252 2-163 (164)
227 cd04125 RabA_like RabA-like su 99.6 4.5E-15 9.8E-20 144.8 15.5 158 61-253 1-162 (188)
228 cd01870 RhoA_like RhoA-like su 99.6 5E-15 1.1E-19 142.2 15.5 160 61-252 2-174 (175)
229 TIGR03156 GTP_HflX GTP-binding 99.6 3.1E-15 6.8E-20 159.7 15.1 150 59-251 188-350 (351)
230 PRK12296 obgE GTPase CgtA; Rev 99.6 4.4E-15 9.6E-20 163.2 16.5 157 59-253 158-340 (500)
231 cd04117 Rab15 Rab15 subfamily. 99.6 9.7E-15 2.1E-19 138.9 16.5 153 62-251 2-160 (161)
232 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.6 3E-16 6.5E-21 130.9 4.9 72 459-533 1-78 (78)
233 KOG0092 GTPase Rab5/YPT51 and 99.6 4.5E-15 9.7E-20 140.1 12.9 163 60-257 5-171 (200)
234 cd04131 Rnd Rnd subfamily. Th 99.6 8.6E-15 1.9E-19 141.9 15.4 159 61-251 2-174 (178)
235 cd03691 BipA_TypA_II BipA_TypA 99.6 3.2E-15 6.9E-20 127.2 10.6 86 263-352 1-86 (86)
236 cd01892 Miro2 Miro2 subfamily. 99.6 7.1E-15 1.5E-19 141.1 14.2 161 59-253 3-166 (169)
237 PRK12297 obgE GTPase CgtA; Rev 99.6 7.8E-15 1.7E-19 159.3 16.1 153 60-253 158-327 (424)
238 cd04130 Wrch_1 Wrch-1 subfamil 99.6 4.2E-15 9.2E-20 142.9 12.5 156 62-249 2-170 (173)
239 PF00025 Arf: ADP-ribosylation 99.6 7.2E-15 1.6E-19 142.1 14.1 158 58-251 12-174 (175)
240 cd04111 Rab39 Rab39 subfamily. 99.6 7.9E-15 1.7E-19 146.1 14.6 156 61-253 3-166 (211)
241 cd01876 YihA_EngB The YihA (En 99.6 3E-14 6.5E-19 134.6 17.9 156 63-252 2-170 (170)
242 cd04091 mtEFG1_II_like mtEFG1_ 99.6 3.5E-15 7.6E-20 125.4 9.8 81 263-352 1-81 (81)
243 KOG1423 Ras-like GTPase ERA [C 99.6 7.6E-15 1.6E-19 147.3 13.4 178 52-255 64-273 (379)
244 PRK11058 GTPase HflX; Provisio 99.6 1.2E-14 2.7E-19 158.7 15.4 152 60-254 197-363 (426)
245 TIGR00437 feoB ferrous iron tr 99.6 7.5E-15 1.6E-19 166.8 13.9 146 67-252 1-154 (591)
246 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 3.1E-14 6.8E-19 143.4 16.4 163 60-252 13-187 (232)
247 cd01514 Elongation_Factor_C El 99.6 1.6E-15 3.5E-20 126.9 5.6 72 459-533 1-79 (79)
248 cd03699 lepA_II lepA_II: This 99.6 7.7E-15 1.7E-19 124.8 9.6 82 263-352 1-86 (86)
249 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 4.5E-14 9.7E-19 141.5 16.6 160 61-251 2-174 (222)
250 cd04148 RGK RGK subfamily. Th 99.6 2.8E-14 6.1E-19 143.2 15.2 156 62-253 2-163 (221)
251 COG0486 ThdF Predicted GTPase 99.6 1.3E-14 2.9E-19 154.7 12.9 154 60-255 217-378 (454)
252 cd01882 BMS1 Bms1. Bms1 is an 99.6 2.7E-13 5.8E-18 136.4 21.7 182 58-271 37-219 (225)
253 cd00882 Ras_like_GTPase Ras-li 99.6 2.1E-14 4.5E-19 131.8 12.5 147 65-249 1-156 (157)
254 KOG0080 GTPase Rab18, small G 99.6 1.9E-14 4.2E-19 131.2 11.5 159 59-252 10-173 (209)
255 KOG0394 Ras-related GTPase [Ge 99.6 2.1E-14 4.5E-19 134.3 11.1 164 58-253 7-178 (210)
256 PF14492 EFG_II: Elongation Fa 99.6 5.6E-15 1.2E-19 122.0 6.5 73 364-445 1-75 (75)
257 cd04103 Centaurin_gamma Centau 99.5 7.5E-14 1.6E-18 132.6 14.5 149 62-251 2-157 (158)
258 PTZ00132 GTP-binding nuclear p 99.5 1.2E-13 2.6E-18 137.9 16.6 158 59-253 8-168 (215)
259 cd04105 SR_beta Signal recogni 99.5 2.6E-13 5.6E-18 134.4 17.0 113 61-188 1-126 (203)
260 cd01896 DRG The developmentall 99.5 1.6E-13 3.5E-18 138.7 15.7 82 62-155 2-90 (233)
261 cd04129 Rho2 Rho2 subfamily. 99.5 1.4E-13 3E-18 134.4 13.7 159 61-253 2-173 (187)
262 COG0370 FeoB Fe2+ transport sy 99.5 1.6E-13 3.6E-18 152.2 15.7 156 61-256 4-167 (653)
263 KOG0073 GTP-binding ADP-ribosy 99.5 2.5E-13 5.3E-18 124.8 14.0 157 59-252 15-177 (185)
264 PF00071 Ras: Ras family; Int 99.5 1.7E-13 3.6E-18 129.8 13.6 156 62-252 1-160 (162)
265 KOG0093 GTPase Rab3, small G p 99.5 2E-13 4.3E-18 122.8 12.9 159 59-252 20-182 (193)
266 PF01926 MMR_HSR1: 50S ribosom 99.5 1.5E-13 3.2E-18 123.4 12.1 107 62-180 1-116 (116)
267 KOG0098 GTPase Rab2, small G p 99.5 2E-13 4.4E-18 127.9 13.3 158 59-252 5-167 (216)
268 KOG0095 GTPase Rab30, small G 99.5 1.7E-13 3.6E-18 123.5 11.8 159 59-252 6-168 (213)
269 cd04104 p47_IIGP_like p47 (47- 99.5 4.4E-13 9.6E-18 132.1 15.5 167 61-256 2-187 (197)
270 PF10662 PduV-EutP: Ethanolami 99.5 1.5E-13 3.2E-18 126.6 10.1 137 61-249 2-142 (143)
271 cd01873 RhoBTB RhoBTB subfamil 99.5 1.1E-12 2.4E-17 129.1 15.4 164 61-251 3-194 (195)
272 KOG0087 GTPase Rab11/YPT3, sma 99.5 3.7E-13 8.1E-18 128.9 11.0 161 57-252 11-175 (222)
273 KOG0075 GTP-binding ADP-ribosy 99.4 4.1E-13 8.9E-18 120.9 10.0 156 61-253 21-182 (186)
274 PLN00023 GTP-binding protein; 99.4 1.7E-12 3.7E-17 135.0 15.5 118 58-185 19-165 (334)
275 cd03700 eEF2_snRNP_like_II EF2 99.4 6.1E-13 1.3E-17 114.8 10.1 89 263-351 1-92 (93)
276 KOG1489 Predicted GTP-binding 99.4 9.6E-13 2.1E-17 133.1 12.8 153 59-250 195-364 (366)
277 cd04090 eEF2_II_snRNP Loc2 eEF 99.4 1E-12 2.2E-17 113.6 11.0 88 263-350 1-91 (94)
278 cd04102 RabL3 RabL3 (Rab-like3 99.4 5.7E-12 1.2E-16 124.5 16.8 114 62-185 2-143 (202)
279 PRK09866 hypothetical protein; 99.4 6.6E-12 1.4E-16 138.9 18.4 116 118-251 229-351 (741)
280 KOG0086 GTPase Rab4, small G p 99.4 2.3E-12 5E-17 116.6 12.1 147 58-225 7-157 (214)
281 KOG0079 GTP-binding protein H- 99.4 1.8E-12 3.9E-17 116.8 11.3 159 59-252 7-168 (198)
282 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 2.5E-12 5.4E-17 126.6 13.3 162 61-254 1-185 (196)
283 COG1084 Predicted GTPase [Gene 99.4 8.8E-12 1.9E-16 127.4 16.4 122 59-195 167-302 (346)
284 cd01850 CDC_Septin CDC/Septin. 99.4 3.1E-11 6.6E-16 125.1 20.6 142 60-206 4-176 (276)
285 COG3596 Predicted GTPase [Gene 99.4 6.2E-12 1.3E-16 125.7 14.0 166 57-256 36-225 (296)
286 PF08477 Miro: Miro-like prote 99.3 2E-12 4.3E-17 116.1 7.7 113 62-182 1-119 (119)
287 COG1163 DRG Predicted GTPase [ 99.3 1.1E-11 2.4E-16 126.1 13.6 85 60-156 63-154 (365)
288 COG1100 GTPase SAR1 and relate 99.3 1.2E-11 2.7E-16 123.2 13.8 166 61-253 6-185 (219)
289 KOG0395 Ras-related GTPase [Ge 99.3 1.3E-11 2.9E-16 121.2 12.1 159 60-254 3-166 (196)
290 PRK13768 GTPase; Provisional 99.3 2.6E-11 5.7E-16 124.1 13.6 117 118-255 96-249 (253)
291 KOG0070 GTP-binding ADP-ribosy 99.3 1.6E-11 3.4E-16 115.9 10.6 158 59-253 16-178 (181)
292 COG2262 HflX GTPases [General 99.3 3.3E-11 7E-16 126.8 13.6 154 58-254 190-357 (411)
293 PRK09435 membrane ATPase/prote 99.3 4.4E-11 9.6E-16 126.0 14.8 170 59-253 55-260 (332)
294 KOG0097 GTPase Rab14, small G 99.3 4.2E-11 9.1E-16 107.0 11.8 150 55-225 6-159 (215)
295 KOG1191 Mitochondrial GTPase [ 99.3 1.5E-11 3.2E-16 131.2 10.1 161 59-252 267-449 (531)
296 PF09439 SRPRB: Signal recogni 99.3 3.2E-11 6.9E-16 116.0 10.7 112 60-188 3-129 (181)
297 PTZ00099 rab6; Provisional 99.2 5.4E-11 1.2E-15 115.1 11.9 119 113-256 23-145 (176)
298 KOG0076 GTP-binding ADP-ribosy 99.2 5.6E-11 1.2E-15 110.4 10.7 168 59-255 16-189 (197)
299 KOG0088 GTPase Rab21, small G 99.2 1.8E-11 3.8E-16 111.6 6.6 158 60-252 13-174 (218)
300 cd01853 Toc34_like Toc34-like 99.2 5.8E-10 1.3E-14 113.6 18.3 153 59-222 30-208 (249)
301 cd01899 Ygr210 Ygr210 subfamil 99.2 2.8E-10 6.1E-15 119.8 16.0 80 63-154 1-111 (318)
302 KOG0083 GTPase Rab26/Rab37, sm 99.2 7E-12 1.5E-16 111.0 2.8 154 65-252 2-159 (192)
303 COG0536 Obg Predicted GTPase [ 99.2 1.5E-10 3.3E-15 118.9 12.8 159 60-254 159-334 (369)
304 KOG0081 GTPase Rab27, small G 99.2 2.4E-11 5.3E-16 110.8 5.2 162 60-252 9-184 (219)
305 KOG0090 Signal recognition par 99.1 7.3E-10 1.6E-14 106.7 13.0 116 60-190 38-164 (238)
306 KOG0091 GTPase Rab39, small G 99.1 4.8E-10 1E-14 103.0 10.5 158 60-252 8-172 (213)
307 KOG0071 GTP-binding ADP-ribosy 99.1 1.5E-09 3.3E-14 97.3 13.3 156 61-253 18-178 (180)
308 PRK09602 translation-associate 99.1 1.8E-09 3.9E-14 117.1 16.6 81 61-153 2-113 (396)
309 PF03308 ArgK: ArgK protein; 99.1 3.1E-10 6.7E-15 113.7 9.7 166 59-252 28-229 (266)
310 KOG1532 GTPase XAB1, interacts 99.1 1.5E-10 3.3E-15 114.9 7.3 181 58-252 17-263 (366)
311 TIGR00750 lao LAO/AO transport 99.1 1.7E-09 3.7E-14 113.6 15.4 172 58-252 32-237 (300)
312 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 3.2E-09 7E-14 106.6 16.2 160 62-252 1-175 (232)
313 COG1703 ArgK Putative periplas 99.1 1E-09 2.2E-14 111.2 12.4 167 59-253 50-254 (323)
314 PF03144 GTP_EFTU_D2: Elongati 99.1 2.4E-10 5.3E-15 94.1 6.0 73 277-351 1-74 (74)
315 TIGR00073 hypB hydrogenase acc 99.1 1.5E-09 3.3E-14 107.8 12.8 164 58-252 20-206 (207)
316 KOG4252 GTP-binding protein [S 99.0 2.1E-10 4.7E-15 106.7 4.4 160 56-250 16-178 (246)
317 TIGR02836 spore_IV_A stage IV 99.0 4.3E-09 9.3E-14 111.4 14.1 168 61-254 18-238 (492)
318 COG4917 EutP Ethanolamine util 99.0 1.5E-09 3.2E-14 95.8 8.4 138 61-250 2-143 (148)
319 KOG0393 Ras-related small GTPa 99.0 1.4E-09 3.1E-14 105.2 8.1 163 60-254 4-180 (198)
320 cd03693 EF1_alpha_II EF1_alpha 99.0 4.9E-09 1.1E-13 90.0 10.1 85 260-355 2-90 (91)
321 KOG0072 GTP-binding ADP-ribosy 99.0 1.7E-09 3.7E-14 97.4 7.5 158 59-253 17-179 (182)
322 KOG0052 Translation elongation 98.9 3.5E-10 7.7E-15 118.4 2.9 138 60-200 7-173 (391)
323 PF03029 ATP_bind_1: Conserved 98.9 3E-09 6.4E-14 107.8 9.0 112 120-250 92-234 (238)
324 cd03698 eRF3_II_like eRF3_II_l 98.9 7.4E-09 1.6E-13 87.4 9.9 79 262-352 1-83 (83)
325 KOG0074 GTP-binding ADP-ribosy 98.9 7.4E-09 1.6E-13 93.1 9.9 143 60-225 17-165 (185)
326 PF05049 IIGP: Interferon-indu 98.9 1.3E-08 2.9E-13 108.2 13.0 170 60-257 35-222 (376)
327 smart00053 DYNc Dynamin, GTPas 98.9 1.2E-08 2.7E-13 103.0 11.9 127 59-185 25-206 (240)
328 PF00735 Septin: Septin; Inte 98.9 1E-07 2.2E-12 99.0 18.2 142 61-207 5-176 (281)
329 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.9E-08 8.5E-13 102.1 14.7 115 59-184 37-166 (313)
330 PF00350 Dynamin_N: Dynamin fa 98.8 1.7E-08 3.8E-13 96.2 9.3 64 118-181 100-168 (168)
331 KOG2486 Predicted GTPase [Gene 98.8 1.2E-08 2.7E-13 102.0 8.1 155 58-225 134-302 (320)
332 TIGR00101 ureG urease accessor 98.8 4.9E-08 1.1E-12 96.3 11.5 103 118-252 91-195 (199)
333 cd01342 Translation_Factor_II_ 98.7 6.3E-08 1.4E-12 79.9 9.7 80 263-351 1-82 (83)
334 PF04548 AIG1: AIG1 family; I 98.7 2.9E-07 6.2E-12 91.9 15.2 114 61-185 1-130 (212)
335 cd04089 eRF3_II eRF3_II: domai 98.7 1.3E-07 2.7E-12 79.7 9.9 78 262-352 1-82 (82)
336 KOG1673 Ras GTPases [General f 98.7 9.3E-08 2E-12 87.4 9.5 162 60-252 20-185 (205)
337 COG5192 BMS1 GTP-binding prote 98.7 1.7E-06 3.6E-11 93.5 19.6 141 60-224 69-211 (1077)
338 cd03695 CysN_NodQ_II CysN_NodQ 98.6 2.4E-07 5.2E-12 77.7 9.9 79 263-352 1-81 (81)
339 KOG1490 GTP-binding protein CR 98.6 4.9E-08 1.1E-12 104.5 6.9 149 59-228 167-330 (620)
340 KOG3883 Ras family small GTPas 98.6 1.2E-06 2.5E-11 80.2 14.6 167 59-263 8-185 (198)
341 KOG1707 Predicted Ras related/ 98.6 2.3E-07 5.1E-12 101.3 11.6 159 60-252 9-174 (625)
342 PRK10463 hydrogenase nickel in 98.6 3.2E-07 6.9E-12 94.7 12.1 162 58-251 102-287 (290)
343 KOG0077 Vesicle coat complex C 98.6 3.2E-07 7E-12 85.1 10.1 113 60-187 20-137 (193)
344 PTZ00258 GTP-binding protein; 98.6 2.9E-07 6.4E-12 99.1 11.2 83 59-153 20-126 (390)
345 COG5019 CDC3 Septin family pro 98.6 1.8E-06 4E-11 90.2 16.6 142 60-206 23-195 (373)
346 KOG1486 GTP-binding protein DR 98.6 6.7E-07 1.5E-11 88.2 12.2 83 61-155 63-152 (364)
347 cd03697 EFTU_II EFTU_II: Elong 98.5 2.8E-07 6E-12 78.5 8.1 82 263-353 1-86 (87)
348 cd03696 selB_II selB_II: this 98.5 4.4E-07 9.5E-12 76.5 8.8 79 263-352 1-83 (83)
349 cd01900 YchF YchF subfamily. 98.5 2.2E-07 4.8E-12 95.8 8.4 80 63-154 1-104 (274)
350 cd01859 MJ1464 MJ1464. This f 98.5 5E-07 1.1E-11 85.4 10.0 95 133-254 3-97 (156)
351 cd03694 GTPBP_II Domain II of 98.5 9.1E-07 2E-11 75.3 10.0 83 263-352 1-87 (87)
352 KOG2655 Septin family protein 98.5 4.3E-06 9.3E-11 88.1 16.7 141 60-206 21-191 (366)
353 PRK09601 GTP-binding protein Y 98.5 5E-07 1.1E-11 96.2 9.5 81 61-153 3-107 (364)
354 COG0378 HypB Ni2+-binding GTPa 98.4 1.1E-06 2.4E-11 84.5 9.7 151 60-251 13-199 (202)
355 TIGR00993 3a0901s04IAP86 chlor 98.4 7.6E-06 1.7E-10 91.9 17.6 116 59-185 117-250 (763)
356 KOG4423 GTP-binding protein-li 98.4 4.7E-08 1E-12 92.1 0.2 161 57-252 22-193 (229)
357 KOG1547 Septin CDC10 and relat 98.4 5.9E-06 1.3E-10 81.1 14.4 143 59-208 45-219 (336)
358 KOG0096 GTPase Ran/TC4/GSP1 (n 98.4 6.1E-07 1.3E-11 85.0 6.6 144 59-225 9-155 (216)
359 KOG0410 Predicted GTP binding 98.3 4E-06 8.7E-11 85.8 10.9 147 59-253 177-341 (410)
360 PRK10416 signal recognition pa 98.3 1.1E-05 2.3E-10 85.3 14.5 124 59-184 113-272 (318)
361 cd03115 SRP The signal recogni 98.3 6.4E-06 1.4E-10 79.2 11.5 122 62-185 2-153 (173)
362 cd01858 NGP_1 NGP-1. Autoanti 98.3 2.3E-06 4.9E-11 81.1 8.1 91 136-252 2-94 (157)
363 cd03110 Fer4_NifH_child This p 98.2 2.3E-05 5E-10 75.8 14.1 66 117-184 91-156 (179)
364 PRK14722 flhF flagellar biosyn 98.2 3.9E-06 8.4E-11 90.0 9.1 126 59-184 136-294 (374)
365 KOG0448 Mitofusin 1 GTPase, in 98.2 1.1E-05 2.3E-10 89.9 12.4 160 59-224 108-311 (749)
366 COG0012 Predicted GTPase, prob 98.2 2.6E-05 5.6E-10 82.3 14.5 81 61-153 3-108 (372)
367 TIGR00064 ftsY signal recognit 98.2 2.9E-05 6.3E-10 80.4 14.7 123 59-184 71-230 (272)
368 cd01855 YqeH YqeH. YqeH is an 98.2 4.7E-06 1E-10 81.5 8.0 105 127-253 19-125 (190)
369 cd03114 ArgK-like The function 98.1 1.1E-05 2.4E-10 75.8 9.5 58 118-182 91-148 (148)
370 KOG1954 Endocytosis/signaling 98.1 5.9E-05 1.3E-09 78.4 15.1 127 58-184 56-224 (532)
371 TIGR01425 SRP54_euk signal rec 98.1 2E-05 4.3E-10 85.9 12.3 123 60-184 100-252 (429)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.2E-05 2.6E-10 74.8 8.9 79 134-225 3-83 (141)
373 KOG3886 GTP-binding protein [S 98.1 7.4E-06 1.6E-10 80.2 7.5 118 60-188 4-133 (295)
374 cd01856 YlqF YlqF. Proteins o 98.1 9.8E-06 2.1E-10 77.9 8.1 99 126-253 2-101 (171)
375 cd01858 NGP_1 NGP-1. Autoanti 98.0 8.6E-06 1.9E-10 77.1 6.2 56 60-129 102-157 (157)
376 TIGR03596 GTPase_YlqF ribosome 98.0 1.7E-05 3.6E-10 82.5 8.8 99 127-254 5-104 (276)
377 cd03688 eIF2_gamma_II eIF2_gam 98.0 5.6E-05 1.2E-09 66.2 10.2 80 259-342 2-95 (113)
378 TIGR00157 ribosome small subun 98.0 1.7E-05 3.7E-10 80.9 7.9 87 137-249 31-119 (245)
379 cd01849 YlqF_related_GTPase Yl 98.0 2.9E-05 6.3E-10 73.4 8.7 84 144-253 1-85 (155)
380 cd03692 mtIF2_IVc mtIF2_IVc: t 98.0 9.3E-05 2E-09 62.5 10.9 78 265-350 3-82 (84)
381 cd04178 Nucleostemin_like Nucl 98.0 1.4E-05 3E-10 77.0 6.5 56 60-129 117-172 (172)
382 PF03193 DUF258: Protein of un 97.9 6.3E-06 1.4E-10 78.0 3.4 65 61-132 36-100 (161)
383 PRK14974 cell division protein 97.9 0.00011 2.4E-09 78.1 12.7 123 59-184 139-292 (336)
384 cd01849 YlqF_related_GTPase Yl 97.9 1.9E-05 4.2E-10 74.6 6.2 57 59-129 99-155 (155)
385 KOG3905 Dynein light intermedi 97.9 0.00032 6.9E-09 72.0 14.4 61 171-252 222-289 (473)
386 PRK09563 rbgA GTPase YlqF; Rev 97.9 3E-05 6.6E-10 81.0 7.5 101 126-255 7-108 (287)
387 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.4E-05 5.2E-10 72.7 5.9 55 62-130 85-139 (141)
388 PF05783 DLIC: Dynein light in 97.9 0.00019 4.1E-09 79.5 13.9 61 171-252 196-263 (472)
389 cd03112 CobW_like The function 97.9 5.3E-05 1.1E-09 72.0 8.3 119 62-183 2-158 (158)
390 KOG1487 GTP-binding protein DR 97.8 4.9E-05 1.1E-09 75.7 7.4 112 61-186 60-184 (358)
391 cd01855 YqeH YqeH. YqeH is an 97.8 3E-05 6.4E-10 75.8 5.8 63 61-129 128-190 (190)
392 PRK12289 GTPase RsgA; Reviewed 97.8 8.1E-05 1.8E-09 79.7 9.5 84 139-249 86-171 (352)
393 cd02036 MinD Bacterial cell di 97.8 0.00024 5.2E-09 68.1 11.9 118 66-185 6-128 (179)
394 cd03111 CpaE_like This protein 97.8 0.00022 4.7E-09 63.0 10.0 99 63-180 2-106 (106)
395 cd02038 FleN-like FleN is a me 97.7 0.00038 8.2E-09 64.6 12.1 103 65-183 5-109 (139)
396 cd03702 IF2_mtIF2_II This fami 97.7 0.00017 3.7E-09 62.2 8.9 77 264-352 2-79 (95)
397 PF00448 SRP54: SRP54-type pro 97.7 0.00024 5.1E-09 70.0 10.8 122 61-184 2-153 (196)
398 TIGR03597 GTPase_YqeH ribosome 97.7 4.1E-05 8.9E-10 82.6 5.7 115 61-185 155-280 (360)
399 cd01856 YlqF YlqF. Proteins o 97.7 7.5E-05 1.6E-09 71.8 6.9 56 60-129 115-170 (171)
400 TIGR00092 GTP-binding protein 97.7 0.00012 2.6E-09 78.3 8.8 83 61-154 3-109 (368)
401 PRK00771 signal recognition pa 97.7 0.00024 5.1E-09 78.2 11.1 121 59-184 94-245 (437)
402 COG0523 Putative GTPases (G3E 97.7 0.00063 1.4E-08 71.9 13.7 122 61-185 2-159 (323)
403 TIGR03597 GTPase_YqeH ribosome 97.7 0.00016 3.4E-09 78.0 9.4 102 129-251 50-151 (360)
404 PRK12727 flagellar biosynthesi 97.7 0.00023 5E-09 79.0 10.6 124 59-184 349-497 (559)
405 PRK12288 GTPase RsgA; Reviewed 97.7 6.1E-05 1.3E-09 80.6 5.8 64 62-132 207-270 (347)
406 cd00066 G-alpha G protein alph 97.6 0.00026 5.6E-09 75.1 10.2 81 103-183 145-240 (317)
407 PRK00098 GTPase RsgA; Reviewed 97.6 0.00015 3.3E-09 76.2 8.2 84 139-248 77-162 (298)
408 TIGR03596 GTPase_YlqF ribosome 97.6 0.00016 3.5E-09 75.1 8.2 56 60-129 118-173 (276)
409 cd02042 ParA ParA and ParB of 97.6 0.00042 9.1E-09 60.5 9.5 82 63-165 2-84 (104)
410 PRK11889 flhF flagellar biosyn 97.6 0.00031 6.6E-09 75.4 10.0 123 60-184 241-390 (436)
411 COG1162 Predicted GTPases [Gen 97.6 7.7E-05 1.7E-09 77.0 5.2 66 61-133 165-230 (301)
412 TIGR00157 ribosome small subun 97.6 0.00012 2.6E-09 74.6 6.3 64 61-132 121-184 (245)
413 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00015 3.3E-09 75.8 7.0 58 60-131 121-178 (287)
414 TIGR02475 CobW cobalamin biosy 97.5 0.00064 1.4E-08 72.8 11.8 140 59-200 3-200 (341)
415 smart00275 G_alpha G protein a 97.5 0.00058 1.3E-08 73.1 11.3 82 103-184 168-264 (342)
416 PRK11537 putative GTP-binding 97.5 0.0007 1.5E-08 71.7 11.7 126 59-185 3-164 (318)
417 cd01851 GBP Guanylate-binding 97.5 0.00026 5.7E-09 71.2 7.9 88 59-153 6-102 (224)
418 KOG0447 Dynamin-like GTP bindi 97.5 0.0012 2.7E-08 71.8 13.2 139 58-196 306-507 (980)
419 TIGR00959 ffh signal recogniti 97.5 0.00048 1E-08 75.6 10.5 122 59-183 98-251 (428)
420 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00034 7.3E-09 73.1 8.6 84 139-249 75-160 (287)
421 COG3640 CooC CO dehydrogenase 97.5 0.00032 6.9E-09 69.5 7.7 63 118-183 133-197 (255)
422 cd01859 MJ1464 MJ1464. This f 97.5 0.00021 4.5E-09 67.4 6.2 57 59-129 100-156 (156)
423 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00019 4.2E-09 75.0 6.4 65 61-132 162-226 (287)
424 PRK05703 flhF flagellar biosyn 97.5 0.00055 1.2E-08 75.3 10.1 123 60-184 221-370 (424)
425 PRK10867 signal recognition pa 97.4 0.00077 1.7E-08 74.0 10.9 122 59-183 99-252 (433)
426 PRK12288 GTPase RsgA; Reviewed 97.4 0.00077 1.7E-08 72.2 10.7 87 140-250 118-205 (347)
427 PRK12726 flagellar biosynthesi 97.4 0.00035 7.6E-09 74.7 7.9 123 59-184 205-355 (407)
428 PRK12289 GTPase RsgA; Reviewed 97.4 0.00016 3.4E-09 77.5 5.2 64 62-132 174-237 (352)
429 cd02037 MRP-like MRP (Multiple 97.4 0.00044 9.6E-09 66.2 7.4 66 117-184 66-134 (169)
430 cd03703 aeIF5B_II aeIF5B_II: T 97.4 0.0016 3.6E-08 57.3 10.1 84 264-352 2-94 (110)
431 cd03701 IF2_IF5B_II IF2_IF5B_I 97.4 0.001 2.2E-08 57.5 8.6 76 264-351 2-78 (95)
432 PRK12723 flagellar biosynthesi 97.3 0.0016 3.5E-08 70.6 11.7 124 59-184 173-325 (388)
433 KOG3887 Predicted small GTPase 97.3 0.0012 2.7E-08 65.2 9.0 138 61-209 28-175 (347)
434 COG1161 Predicted GTPases [Gen 97.3 0.00038 8.2E-09 73.9 5.9 57 60-130 132-188 (322)
435 PRK14721 flhF flagellar biosyn 97.3 0.00061 1.3E-08 74.4 7.5 124 59-184 190-339 (420)
436 PRK01889 GTPase RsgA; Reviewed 97.2 0.0014 3.1E-08 70.6 10.0 82 140-248 110-192 (356)
437 PRK13796 GTPase YqeH; Provisio 97.2 0.00049 1.1E-08 74.4 6.4 61 61-130 161-221 (365)
438 KOG1491 Predicted GTP-binding 97.2 0.00094 2E-08 69.3 7.8 83 60-154 20-126 (391)
439 PRK13796 GTPase YqeH; Provisio 97.2 0.0016 3.4E-08 70.5 9.9 100 131-252 58-158 (365)
440 PF02492 cobW: CobW/HypB/UreG, 97.2 0.0011 2.3E-08 64.3 7.8 121 62-184 2-154 (178)
441 PHA02518 ParA-like protein; Pr 97.2 0.0031 6.7E-08 62.3 11.0 65 117-183 75-145 (211)
442 PRK06731 flhF flagellar biosyn 97.2 0.0024 5.1E-08 66.0 10.2 125 59-185 74-225 (270)
443 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0026 5.6E-08 53.8 8.8 77 63-163 2-79 (99)
444 PRK13849 putative crown gall t 97.1 0.0014 3E-08 66.3 8.1 64 117-182 82-151 (231)
445 PRK12724 flagellar biosynthesi 97.1 0.0015 3.3E-08 70.9 8.6 122 61-184 224-372 (432)
446 TIGR01007 eps_fam capsular exo 97.1 0.0026 5.6E-08 62.8 9.6 66 118-184 127-193 (204)
447 PRK00098 GTPase RsgA; Reviewed 97.1 0.00078 1.7E-08 70.8 6.2 65 61-132 165-229 (298)
448 TIGR01969 minD_arch cell divis 97.1 0.0037 7.9E-08 63.5 10.7 64 118-183 108-172 (251)
449 PF09547 Spore_IV_A: Stage IV 97.0 0.0071 1.5E-07 65.0 12.5 168 61-254 18-238 (492)
450 PRK06995 flhF flagellar biosyn 97.0 0.0025 5.5E-08 70.7 9.2 167 60-251 256-449 (484)
451 PRK14723 flhF flagellar biosyn 97.0 0.0035 7.5E-08 72.9 10.5 124 60-184 185-336 (767)
452 PRK08099 bifunctional DNA-bind 96.9 0.0055 1.2E-07 67.0 11.2 29 58-86 217-245 (399)
453 PRK13695 putative NTPase; Prov 96.9 0.0026 5.6E-08 61.2 7.5 39 141-181 95-136 (174)
454 TIGR03371 cellulose_yhjQ cellu 96.9 0.011 2.5E-07 59.8 12.7 64 119-184 115-181 (246)
455 TIGR01968 minD_bact septum sit 96.9 0.0061 1.3E-07 62.2 10.5 64 118-183 111-175 (261)
456 KOG1534 Putative transcription 96.9 0.0034 7.4E-08 61.1 7.7 67 119-185 98-178 (273)
457 cd02117 NifH_like This family 96.9 0.0055 1.2E-07 61.0 9.5 66 117-183 115-187 (212)
458 COG1419 FlhF Flagellar GTP-bin 96.8 0.0026 5.7E-08 68.2 7.4 124 59-184 202-351 (407)
459 PF01656 CbiA: CobQ/CobB/MinD/ 96.7 0.0018 3.9E-08 62.9 4.8 65 118-184 94-161 (195)
460 COG1162 Predicted GTPases [Gen 96.7 0.0087 1.9E-07 62.1 9.7 81 143-248 80-162 (301)
461 PF14578 GTP_EFTU_D4: Elongati 96.7 0.018 3.8E-07 48.0 9.6 75 262-351 4-80 (81)
462 KOG3859 Septins (P-loop GTPase 96.7 0.0038 8.2E-08 63.0 6.6 135 59-204 41-207 (406)
463 COG0541 Ffh Signal recognition 96.6 0.015 3.2E-07 62.9 11.1 123 59-184 99-252 (451)
464 KOG2485 Conserved ATP/GTP bind 96.6 0.0031 6.7E-08 65.0 5.5 103 60-169 143-246 (335)
465 cd02032 Bchl_like This family 96.6 0.013 2.8E-07 60.5 10.2 65 118-183 115-184 (267)
466 KOG0780 Signal recognition par 96.5 0.011 2.3E-07 62.6 9.1 122 59-183 100-252 (483)
467 TIGR03815 CpaE_hom_Actino heli 96.5 0.033 7.1E-07 59.2 13.1 64 118-183 204-267 (322)
468 COG1121 ZnuC ABC-type Mn/Zn tr 96.5 0.012 2.5E-07 59.9 8.7 23 61-83 31-53 (254)
469 CHL00175 minD septum-site dete 96.4 0.023 5E-07 59.0 11.2 64 118-183 126-190 (281)
470 KOG2743 Cobalamin synthesis pr 96.4 0.012 2.6E-07 60.3 8.5 142 56-199 53-237 (391)
471 COG0552 FtsY Signal recognitio 96.4 0.036 7.8E-07 58.1 11.9 120 59-183 138-296 (340)
472 TIGR03348 VI_IcmF type VI secr 96.3 0.0043 9.4E-08 76.8 5.6 116 59-184 110-256 (1169)
473 PRK13185 chlL protochlorophyll 96.3 0.018 3.9E-07 59.5 9.4 65 117-182 116-185 (270)
474 cd04178 Nucleostemin_like Nucl 96.3 0.0072 1.6E-07 58.2 5.9 41 144-184 1-43 (172)
475 PRK10751 molybdopterin-guanine 96.2 0.016 3.5E-07 55.7 7.5 25 59-83 5-29 (173)
476 cd02035 ArsA ArsA ATPase funct 96.2 0.053 1.1E-06 54.2 11.6 68 119-186 114-185 (217)
477 CHL00072 chlL photochlorophyll 96.1 0.026 5.5E-07 59.2 9.5 65 118-183 115-184 (290)
478 KOG1533 Predicted GTPase [Gene 96.1 0.0075 1.6E-07 59.8 4.8 67 118-184 96-176 (290)
479 cd00550 ArsA_ATPase Oxyanion-t 96.1 0.14 3.1E-06 52.5 14.5 69 117-185 123-203 (254)
480 smart00010 small_GTPase Small 96.1 0.01 2.2E-07 52.8 5.3 22 62-83 2-23 (124)
481 cd02040 NifH NifH gene encodes 96.1 0.028 6.1E-07 57.8 9.3 63 118-180 116-184 (270)
482 KOG1424 Predicted GTP-binding 96.1 0.0053 1.2E-07 67.0 3.9 72 60-147 314-387 (562)
483 PRK10818 cell division inhibit 96.0 0.044 9.5E-07 56.5 10.6 64 118-183 113-185 (270)
484 COG1618 Predicted nucleotide k 95.9 0.11 2.3E-06 49.0 11.3 24 60-83 5-28 (179)
485 TIGR03574 selen_PSTK L-seryl-t 95.9 0.05 1.1E-06 55.5 10.3 21 63-83 2-22 (249)
486 TIGR01281 DPOR_bchL light-inde 95.8 0.041 9E-07 56.7 9.0 66 117-183 114-184 (268)
487 PRK13230 nitrogenase reductase 95.8 0.053 1.1E-06 56.3 9.8 64 117-180 115-183 (279)
488 PRK01889 GTPase RsgA; Reviewed 95.7 0.013 2.8E-07 63.2 5.1 65 61-132 196-260 (356)
489 PF08433 KTI12: Chromatin asso 95.5 0.088 1.9E-06 54.5 10.3 102 62-183 3-109 (270)
490 PRK13232 nifH nitrogenase redu 95.5 0.06 1.3E-06 55.7 9.0 67 116-182 114-185 (273)
491 KOG2484 GTPase [General functi 95.4 0.014 2.9E-07 62.1 3.8 57 58-128 250-306 (435)
492 KOG0082 G-protein alpha subuni 95.4 0.083 1.8E-06 56.2 9.6 82 102-183 178-274 (354)
493 cd03116 MobB Molybdenum is an 95.4 0.019 4.2E-07 54.5 4.4 23 61-83 2-24 (159)
494 PF13671 AAA_33: AAA domain; P 95.4 0.028 6.1E-07 51.7 5.4 23 63-85 2-24 (143)
495 cd03222 ABC_RNaseL_inhibitor T 95.3 0.11 2.5E-06 50.2 9.7 23 61-83 26-48 (177)
496 KOG4181 Uncharacterized conser 95.3 0.21 4.6E-06 52.3 11.9 25 60-84 188-212 (491)
497 TIGR01287 nifH nitrogenase iro 95.2 0.078 1.7E-06 54.9 9.0 63 118-180 115-183 (275)
498 PF13555 AAA_29: P-loop contai 95.2 0.021 4.5E-07 45.1 3.4 22 62-83 25-46 (62)
499 COG0563 Adk Adenylate kinase a 95.1 0.037 8E-07 53.6 5.6 106 62-178 2-111 (178)
500 TIGR03018 pepcterm_TyrKin exop 95.0 0.34 7.3E-06 48.0 12.2 57 120-179 150-207 (207)
No 1
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-172 Score=1322.66 Aligned_cols=568 Identities=50% Similarity=0.812 Sum_probs=550.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCC----CCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
..+||||||+|+|||||||+++||+|+|. ....+++||++++|+||||||.++++.+.|++++|||+|||||+||+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 46899999999999999999999999994 44568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+|++|.|+|+|++||+|||.+|++|||++++++|.+.|+++|||+||+|++++++ +++.++++|||.+++++++|++
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp---~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARP---DEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCH---HHHHHHHHHHHHHhCCChhhCC
Confidence 9999999999999999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd 293 (639)
||++|+||+.||+..+ +.....++.+||++|++|+|+|..+.++||+++|+.++|++|+|+|.+|||++|++|+||
T Consensus 160 FPivYAS~~~G~a~~~----~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q 235 (603)
T COG1217 160 FPIVYASARNGTASLD----PEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQ 235 (603)
T ss_pred CcEEEeeccCceeccC----ccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCC
Confidence 9999999999998765 334444799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeee
Q 006610 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTF 373 (639)
Q Consensus 294 ~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~ 373 (639)
.|.+.+.++ ..+..||++++.+.|.++.++++|.|||||||+|++++.+|||||+++++.+||.+.+++|+++|.|
T Consensus 236 ~V~~i~~~g----~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf 311 (603)
T COG1217 236 QVALIKSDG----TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTF 311 (603)
T ss_pred eEEEEcCCC----cEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEE
Confidence 999997543 4578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHcCcEEEEeCCeEEEEe
Q 006610 374 GVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKT 452 (639)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrreg~ev~vs~P~V~yrE 452 (639)
.+|+|||+|+|||++|++++++||.++++.|++|+|+++ ..+.|.|+|||||||+||+|+|||||||++||+|+|+|||
T Consensus 312 ~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~ke 391 (603)
T COG1217 312 SVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRREGFELQVSRPEVIIKE 391 (603)
T ss_pred EecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhcceEEEecCceEEEEe
Confidence 999999999999999999999999999999999999998 7789999999999999999999999999999999999999
Q ss_pred ecCceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-CEEEEEEEeccccccchhhhccccceeceEeeee
Q 006610 453 ENGVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRA 525 (639)
Q Consensus 453 ~~g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~ 525 (639)
++|+++||||+++|+| +|.||+.|+.|||+| .+|. | ||+|++|.+|+|+|+||+++|+++|+|+|++++.
T Consensus 392 idG~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem---~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~ 468 (603)
T COG1217 392 IDGVKCEPFEEVTIDVPEEHQGAVIEKLGERKGEM---KDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHS 468 (603)
T ss_pred cCCcCcCcceeEEecCchhhhhHHHHHHhhhhHhH---hhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeec
Confidence 9999999999999999 999999999999999 9999 4 8999999999999999999999999999999999
Q ss_pred ccceeeccCCCCCccceeEEEecCcchhhhhccCccccccccccCCCccccceEEeecCCCCCeeeeccccccccccccC
Q 006610 526 FLKYEKHRGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAA 605 (639)
Q Consensus 526 f~~y~~~~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~ 605 (639)
|+||+|+.|++.+|.||+|||+++|++++|||++||+||+|||+||++||+|||||||||+|||+|||||+|||||||||
T Consensus 469 F~~Y~p~~g~i~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Ras 548 (603)
T COG1217 469 FDHYRPVKGEIGGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRAS 548 (603)
T ss_pred ccccccccccccccccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceecccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeCCCccCCHHHHHccccCCeeEEecCC
Q 006610 606 GKDENVKLTPPRLMTLEEAIGYVASDELIEASCT 639 (639)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~tp~ 639 (639)
|+|++++|+||+.||||+|||||+|||||||||.
T Consensus 549 g~Dea~~L~~p~~mtLE~Ale~i~dDElvEVTP~ 582 (603)
T COG1217 549 GKDEAVTLTPPIRMTLERALEFIADDELVEVTPE 582 (603)
T ss_pred CCccceEecCcccccHHHHHhhcCCCceEEecch
Confidence 9999999999999999999999999999999994
No 2
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.3e-146 Score=1230.82 Aligned_cols=566 Identities=56% Similarity=0.886 Sum_probs=537.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCC----CCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGAD----IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~----~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
+|||+|+||+|||||||+++|++++|.. ....++||++++|++||+|+.++...+.|++++|||||||||.||.++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 6999999999999999999999998842 234689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++++++++|++||||||.+|+++||+++|.++.+.++|+|+|+||+|++++++ .++.+++.+++..+++.++++.+|
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~---~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARP---DEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCH---HHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999999999999999999999999999999999999977665 557788888888888877788899
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEE
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKV 295 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v 295 (639)
++++||++|++..+.. ....|+.+||+.|++++|+|..+.++||+++|+++++++|+|++++|||++|+|++||.|
T Consensus 158 vl~~SA~~g~~~~~~~----~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V 233 (594)
T TIGR01394 158 IVYASGRAGWASLDLD----DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQV 233 (594)
T ss_pred EEechhhcCcccccCc----ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEE
Confidence 9999999998654422 234489999999999999998888999999999999999999999999999999999999
Q ss_pred EEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeee
Q 006610 296 HGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGV 375 (639)
Q Consensus 296 ~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~ 375 (639)
++.+.++ +....+|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+++.+.++|++++|+|+++|+|.|
T Consensus 234 ~~~~~~~----~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~ 309 (594)
T TIGR01394 234 ALMKRDG----TIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSV 309 (594)
T ss_pred EEecCCC----ceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEe
Confidence 9987532 234689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHcCcEEEEeCCeEEEEeec
Q 006610 376 NDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEN 454 (639)
Q Consensus 376 ~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrreg~ev~vs~P~V~yrE~~ 454 (639)
|++||+|+|+|++|+++|++||+|++++||+|+|+++ ++++|+|+|||||||+|++|+|||+|||+++++|+|+|||++
T Consensus 310 ~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~ 389 (594)
T TIGR01394 310 NDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEID 389 (594)
T ss_pred cCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCC
Confidence 9999999999999999999999999999999999998 778899999999999999999999999999999999999999
Q ss_pred CceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-CEEEEEEEeccccccchhhhccccceeceEeeeecc
Q 006610 455 GVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFL 527 (639)
Q Consensus 455 g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~ 527 (639)
|+++|||++++|+| +|+||++|++|||+| ++|+ + ||++|+|.+|+|||+||+++|+|+|+|+|+|++.|+
T Consensus 390 g~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~---~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~ 466 (594)
T TIGR01394 390 GKKLEPIEELTIDVPEEHVGAVIEKLGKRKGEM---VDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFD 466 (594)
T ss_pred CeEECCEEEEEEEechHHHHHHHHHHHHhCCEE---eccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEec
Confidence 99999999999999 999999999999999 9999 3 799999999999999999999999999999999999
Q ss_pred ceeeccCCCCCccceeEEEecCcchhhhhccCccccccccccCCCccccceEEeecCCCCCeeeeccccccccccccCCC
Q 006610 528 KYEKHRGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGK 607 (639)
Q Consensus 528 ~y~~~~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~~~ 607 (639)
||+|++|++..|.||+|||+++|++|+|||++||+||+|||+||++||+|||||||+|+|||+|||||+||||||||+|+
T Consensus 467 ~Y~~~~~~i~~~~~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy~g~i~g~~~~~~d~~~n~~~~k~~~n~r~~~~ 546 (594)
T TIGR01394 467 EYEPWKGEIETRRNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKLTNVRSSGK 546 (594)
T ss_pred cceeCCCcCCCCCceeEEECCCCcChHhhhhchhhcccEEeCCCCceeCceEEEeecCcCCcEEecccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeCCCccCCHHHHHccccCCeeEEecCC
Q 006610 608 DENVKLTPPRLMTLEEAIGYVASDELIEASCT 639 (639)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~e~~e~tp~ 639 (639)
|++++|+|||.||||||||||+|||||||||.
T Consensus 547 ~~~~~~~~~~~~~le~~~~~~~~de~~evtp~ 578 (594)
T TIGR01394 547 DEAVKLTPPRKLSLEQALEYIEDDELVEVTPK 578 (594)
T ss_pred CcceeeCCCccCCHHHHHhhccCCeEEEECch
Confidence 99999999999999999999999999999994
No 3
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=9.7e-144 Score=1207.26 Aligned_cols=568 Identities=47% Similarity=0.741 Sum_probs=536.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+++|||+|+||+|||||||+++|++++|... ..+++||++++|+++|+|+.++...+.|++++++|||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 4699999999999999999999999877421 246899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.++++.+|++|+|||+.+|++.||+++|+.+...++|+|+|+||+|++++++ .++.+++.++|..+++.+.+.+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~---~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP---DWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch---hHHHHHHHHHHhccCccccccC
Confidence 9999999999999999999999999999999999999999999999999988776 5577788888877777666778
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd 293 (639)
+|++++||++|++..+. .....|+.+||++|++++|+|..++++||+++||++++++|+|++++|||++|+|++||
T Consensus 160 ~PVi~~SA~~G~~~~~~----~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd 235 (607)
T PRK10218 160 FPIVYASALNGIAGLDH----EDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQ 235 (607)
T ss_pred CCEEEeEhhcCcccCCc----cccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCC
Confidence 99999999999965432 11233799999999999999988889999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeee
Q 006610 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTF 373 (639)
Q Consensus 294 ~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~ 373 (639)
.|++.+.++ +...+||++|+.+.|.++.++++|.|||||+|+|++++.+|||||+.+.+.++|++++|+|+++|+|
T Consensus 236 ~v~~~~~~~----~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~ 311 (607)
T PRK10218 236 QVTIIDSEG----KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFF 311 (607)
T ss_pred EEEEecCCC----cEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEE
Confidence 999976421 2246899999999999999999999999999999999999999999998999999999999999999
Q ss_pred eecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHcCcEEEEeCCeEEEEe
Q 006610 374 GVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKT 452 (639)
Q Consensus 374 ~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrreg~ev~vs~P~V~yrE 452 (639)
.+|+|||+|+++|..+++++.++|.+++++||+|+|+++ .+++|+|+|||||||+|++|+|||+|||+++++|+|+|||
T Consensus 312 ~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yre 391 (607)
T PRK10218 312 CVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFRE 391 (607)
T ss_pred EeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEE
Confidence 999999999999999999999999999999999999998 7788999999999999999999999999999999999999
Q ss_pred ecCceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc---CCEEEEEEEeccccccchhhhccccceeceEeeee
Q 006610 453 ENGVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRA 525 (639)
Q Consensus 453 ~~g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~ 525 (639)
.+|+++|||++++|+| +|+||++|++|||+| ++|+ +++++|+|.+|+|||+||+++|+|+|+|+|+|++.
T Consensus 392 t~g~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~---~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 468 (607)
T PRK10218 392 IDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDL---KNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYST 468 (607)
T ss_pred ECCEEeCCeEEEEEEechhhHHHHHHHHHhcCCEE---eccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEE
Confidence 8999999999999999 999999999999999 9999 37999999999999999999999999999999999
Q ss_pred ccceeecc-CCCCCccceeEEEecCcchhhhhccCccccccccccCCCccccceEEeecCCCCCeeeecccccccccccc
Q 006610 526 FLKYEKHR-GLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRA 604 (639)
Q Consensus 526 f~~y~~~~-g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~ 604 (639)
|+||+|++ |++++|.||+|||+++|++|+|||++||+||+|||+||++||+|||||||+|+|||+|||||+||||||||
T Consensus 469 f~~Y~~~~~g~~~~~~~g~~~~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~vn~~~~k~~tn~r~ 548 (607)
T PRK10218 469 FSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRA 548 (607)
T ss_pred ecCccCCCCCCCCCccceEEEECCCCcCHHHhhhhhhhccceeecCCCcEecceEEeeecCcCCceeccccccccccccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeCCCccCCHHHHHccccCCeeEEecCC
Q 006610 605 AGKDENVKLTPPRLMTLEEAIGYVASDELIEASCT 639 (639)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~tp~ 639 (639)
+|+|++|+|+|||.||||+|||||+|||||||||.
T Consensus 549 ~~~~~~~~l~~~~~~~le~~~~~~~~de~~evtp~ 583 (607)
T PRK10218 549 SGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPT 583 (607)
T ss_pred cCCCcceeecCCccCCHHHHHhhccCCeEEEECch
Confidence 99999999999999999999999999999999994
No 4
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-99 Score=797.88 Aligned_cols=542 Identities=35% Similarity=0.434 Sum_probs=500.4
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCC---CCCccccccccccccccceeEeeeeEEEeecC---ceEEEEeCC
Q 006610 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGA---DIPHERAMDSISLERERGITIASKVTGISWRE---NELNMVDTP 127 (639)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~---~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~---~~i~iIDTP 127 (639)
..+.+++||++||+|+|||||||+++||..+|. ...++++||+.+.|+||||||.+..+++.|++ +.+|+||||
T Consensus 54 ~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 54 LDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP 133 (650)
T ss_pred cCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence 334578999999999999999999999999994 34568999999999999999999999999998 999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
||.||.+||.|.+.+|||+||||||.+|+++||...+..|.++|+.+|.|+||+|++.+++ +++.++++++|.....
T Consensus 134 GHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp---e~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 134 GHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP---ERVENQLFELFDIPPA 210 (650)
T ss_pred CcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH---HHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 4566777777654322
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEee
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSG 287 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG 287 (639)
+++++||++|+ |+..+|++|++++|+|....++||+|++|+.++|.|.|+|+++||..|
T Consensus 211 -------~~i~vSAK~G~--------------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G 269 (650)
T KOG0462|consen 211 -------EVIYVSAKTGL--------------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDG 269 (650)
T ss_pred -------ceEEEEeccCc--------------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeee
Confidence 49999999999 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecC-CCCCCcCCeeeecCCCcCCCCccCCC
Q 006610 288 VVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG-MTKPSIGHTVANTEVTTALPTIELDP 366 (639)
Q Consensus 288 ~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~g-l~~~~~Gdtl~~~~~~~~l~~~~~~~ 366 (639)
.+++||.|....+++ ....++.+++.+..-...++...++|+|++..+ ++++.+||||++.....++++++-.+
T Consensus 270 ~vrkGdkV~~~~t~~-----~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~ 344 (650)
T KOG0462|consen 270 VVRKGDKVQSAATGK-----SYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFE 344 (650)
T ss_pred eeecCCEEEEeecCc-----ceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCC
Confidence 999999999997653 356788888888888888888889999998877 88999999999988666778888888
Q ss_pred CeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC----CCceEEEEecChhHHHHHHHHHHHc-CcEE
Q 006610 367 PTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG----MAETYEVQGRGELQLGILIENMRRE-GFEL 441 (639)
Q Consensus 367 P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~----~~~~~~v~g~GelhL~vl~e~Lrre-g~ev 441 (639)
|+.+|.| ++..|+.|+| ...+.+++.|+..+|.++.+..+ .++.|+|+|+|.|||+|++|||+|| |+|+
T Consensus 345 ~~~pMvF-vg~fP~dgsd-----~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~el 418 (650)
T KOG0462|consen 345 PTKPMVF-VGLFPLDGSD-----YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAEL 418 (650)
T ss_pred CCcceEE-eccccCccch-----hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCcee
Confidence 9999999 8999999876 35667777888889999998875 4678999999999999999999998 9999
Q ss_pred EEeCCeEEEEe--ecC------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc---CCEE
Q 006610 442 SVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---GWLW 494 (639)
Q Consensus 442 ~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~~~~ 494 (639)
.+++|.|+||- .+| ..+||++.++|.+ +|.||+.|++|||++ .+|. +.++
T Consensus 419 ivt~PtV~Yr~~~~~~~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq---~dm~~i~~nr~ 495 (650)
T KOG0462|consen 419 IVTPPTVPYRVVYSNGDEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQ---KDMTYIDGNRV 495 (650)
T ss_pred eecCCcceEEEEecCCceeeecChhhCCCcccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhhe---ecceeccCCeE
Confidence 99999999996 333 2489999999999 999999999999999 9998 5799
Q ss_pred EEEEEeccccccc-hhhhccccceeceEeeeeccceeeccCCCCCccceeEEEecCcchhhhhccCccccccccccCCCc
Q 006610 495 KLSLTGKLRGLVG-YRSVFSSDTRGTGFMHRAFLKYEKHRGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTE 573 (639)
Q Consensus 495 ~i~~~vP~~~l~g-~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 573 (639)
.|++.+|+|||.| |...|.|+|+|.|+|+.+|++|+ ++++.+..-+++.++.+|.+|.+.+..+++||++||.++-+
T Consensus 496 ~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~ 573 (650)
T KOG0462|consen 496 MLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--ASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKD 573 (650)
T ss_pred EEEEecChHHHHHHHHHHHhccccceeEEeecccccc--cccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999 99999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred cccceEEeecCCCCCeeeeccccccccccccCCCCcceeeCCCccCCHHHHHccccCCeeEEecCC
Q 006610 574 TYDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGKDENVKLTPPRLMTLEEAIGYVASDELIEASCT 639 (639)
Q Consensus 574 ~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~tp~ 639 (639)
+|.||++|.|.++-|..-|++|+|-. +..+|...+|.+|...+++.+|+|..+|+..++||.
T Consensus 574 ~ip~Q~~ev~iqa~igsk~iare~i~----a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vg 635 (650)
T KOG0462|consen 574 LIPRQIFEVHIQACIGSKNIARETIS----AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVG 635 (650)
T ss_pred hcchhhhhhhhhhhcccchhhHHHHH----HhccceeeEecCCchhhHHHHHHhhhcCceeeeccc
Confidence 99999999999999999999999876 889999999999999999999999999999999984
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-85 Score=739.07 Aligned_cols=444 Identities=32% Similarity=0.467 Sum_probs=396.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC------ccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCC
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP------HERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGH 129 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~------~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh 129 (639)
.+++|||+|+||+|||||||+++||+.+|.... ..++||++++|++|||||.++.+++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 578999999999999999999999999996432 24699999999999999999999999996 99999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh-----
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----- 204 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~----- 204 (639)
.||..|++++|+.+|++|+||||.+|+++||+.+|++|.++++|+|+|+||||+..+++... .+++.+.+..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~---~~~l~~~l~~~~~~v 163 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLV---VEQLKERLGANPVPV 163 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhh---HHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999887443 2222221110
Q ss_pred ---cCC------------------C------------------------------------------Cc-----------
Q 006610 205 ---LGA------------------T------------------------------------------DE----------- 210 (639)
Q Consensus 205 ---~g~------------------~------------------------------------------~~----------- 210 (639)
.+. . ..
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 000 0 00
Q ss_pred ------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC--------------------CCCCCce
Q 006610 211 ------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SLDAPFQ 264 (639)
Q Consensus 211 ------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~--------------------~~~~p~~ 264 (639)
...+|+++.||.++. |++.|||++++++|+|.. +.++||.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~--------------gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~ 309 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNK--------------GVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLS 309 (697)
T ss_pred HHhhhccceeeEEeeecccCC--------------cHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceE
Confidence 002566666666665 999999999999999921 3479999
Q ss_pred eEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC
Q 006610 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP 344 (639)
Q Consensus 265 ~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 344 (639)
++|||+.++++.|+++|+|||||+|++||.|++...+ +++||.+|+.++|.++++++++.||||+++.||+++
T Consensus 310 a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~-------~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~ 382 (697)
T COG0480 310 ALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG-------KKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA 382 (697)
T ss_pred EEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC-------ccEEEEEEEEccCCceeecccccCccEEEEEccccc
Confidence 9999999999999999999999999999999988532 678999999999999999999999999999999999
Q ss_pred CcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecC
Q 006610 345 SIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRG 423 (639)
Q Consensus 345 ~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~G 423 (639)
.+|||||+...+..++++.+|+|++++++.|++. .|..||.++|.+++++||+++++.+ ++++++|+|||
T Consensus 383 ~tGdTl~~~~~~v~~~~~~~pePVi~vavepk~~---------~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmG 453 (697)
T COG0480 383 TTGDTLCDENKPVILESMEFPEPVISVAVEPKTK---------ADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMG 453 (697)
T ss_pred ccCCeeecCCCccccccccCCCceEEEEEeECCh---------hhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecc
Confidence 9999999988667899999999999999999874 6889999999999999999999998 88889999999
Q ss_pred hhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ec--------------C--------------------------------
Q 006610 424 ELQLGILIENMRRE-GFELSVSPPKVMYKT-EN--------------G-------------------------------- 455 (639)
Q Consensus 424 elhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~--------------g-------------------------------- 455 (639)
||||+|++++|+|+ |+|+.+++|+|+||| +. |
T Consensus 454 ELHLei~~drl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P 533 (697)
T COG0480 454 ELHLEIIVDRLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVP 533 (697)
T ss_pred hhhHHHHHHHHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCc
Confidence 99999999999986 999999999999999 32 1
Q ss_pred ----------------------------------------------------------------ceeeeeeeEEEEE---
Q 006610 456 ----------------------------------------------------------------VKLEPIEEVTIEL--- 468 (639)
Q Consensus 456 ----------------------------------------------------------------~~~EP~~~~~i~v--- 468 (639)
.+||||++|+|.+
T Consensus 534 ~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d 613 (697)
T COG0480 534 KEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEE 613 (697)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchh
Confidence 2899999999999
Q ss_pred -cchHHHHhhccceEEeeeeccc---C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 469 -LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 469 -~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|+||++|++|||++ ++|+ + ++..|+|++|++||+||+++||++|+|+|.|++.|+||+++|..+
T Consensus 614 ~~G~V~~~l~~rRG~I---~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~ 683 (697)
T COG0480 614 YMGDVIGDLNSRRGQI---LGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSV 683 (697)
T ss_pred hhchhHHhhhhcceEE---eceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHH
Confidence 999999999999999 9999 2 579999999999999999999999999999999999999998543
No 6
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-84 Score=690.04 Aligned_cols=446 Identities=29% Similarity=0.429 Sum_probs=397.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+++|||+|++|.|+|||||.+++|+.+|... ...++||+.+.|++|||||.+..+.+.|++++|||||||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 345799999999999999999999999988421 22689999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHH-H------------
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE-S------------ 196 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~-~------------ 196 (639)
.||.-||+|+|+..||+|+|+|+..|++.||..+|+++.++++|.|.++|||||-++++.+..... .
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 999999999999999999999999999999999999999999999999999999999885532211 1
Q ss_pred --------HHHHHHHhc-----C-----------------------------------------CCC-------------
Q 006610 197 --------LVFDLFANL-----G-----------------------------------------ATD------------- 209 (639)
Q Consensus 197 --------~i~~l~~~~-----g-----------------------------------------~~~------------- 209 (639)
.+.|++... | ..+
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 111221100 0 000
Q ss_pred ----ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC--------------------CCCC-Cce
Q 006610 210 ----EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SLDA-PFQ 264 (639)
Q Consensus 210 ----~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~--------------------~~~~-p~~ 264 (639)
....+||+++||+++. |+++|||++++|+|+|.. ..++ ||.
T Consensus 275 r~Ti~r~fvPVl~GSAlKNk--------------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv 340 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKNK--------------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFV 340 (721)
T ss_pred HHHhhcceeeEEechhhccc--------------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCcee
Confidence 0012799999999998 999999999999999941 1233 999
Q ss_pred eEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC
Q 006610 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP 344 (639)
Q Consensus 265 ~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 344 (639)
++.||+..++| |.+.|.|||+|+|++||.|++.+++ ++.|+.+|+.++...+++|+++.|||||++.|+ ++
T Consensus 341 ~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg-------KKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dc 411 (721)
T KOG0465|consen 341 ALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG-------KKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DC 411 (721)
T ss_pred eeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCC-------ceeEhHHHhHhcccccchhhhhhccceeeeecc-cc
Confidence 99999999999 9999999999999999999999653 788999999999999999999999999999999 89
Q ss_pred CcCCeeeec-CCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEec
Q 006610 345 SIGHTVANT-EVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGR 422 (639)
Q Consensus 345 ~~Gdtl~~~-~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~ 422 (639)
.+|||+++. .....+..+.+|+|+++++++|++. .|.+++.++|.+...|||++++..+ +.++++|+||
T Consensus 412 asGDTftd~~~~~~~m~si~vPePVis~aikP~~k---------~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGM 482 (721)
T KOG0465|consen 412 ASGDTFTDKQNLALSMESIHIPEPVISVAIKPVNK---------KDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGM 482 (721)
T ss_pred ccCceeccCccccceeeeeecCCCeeEEEeccccc---------ccHHHHHHHHHhhcccCCceEEEeccccccchhhcc
Confidence 999999998 5667788999999999999999874 5788999999999999999999998 8888999999
Q ss_pred ChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ecC---------------------------------------------
Q 006610 423 GELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG--------------------------------------------- 455 (639)
Q Consensus 423 GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g--------------------------------------------- 455 (639)
|||||+|..|||+|| |+++.+++|+|.||| +..
T Consensus 483 GELHLEIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~ 562 (721)
T KOG0465|consen 483 GELHLEIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGG 562 (721)
T ss_pred chhhHHHHHHHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCC
Confidence 999999999999997 999999999999999 321
Q ss_pred -------------------------------------------------------------------ceeeeeeeEEEEE
Q 006610 456 -------------------------------------------------------------------VKLEPIEEVTIEL 468 (639)
Q Consensus 456 -------------------------------------------------------------------~~~EP~~~~~i~v 468 (639)
.+|||||.|+|.+
T Consensus 563 ~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~ 642 (721)
T KOG0465|consen 563 NVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTT 642 (721)
T ss_pred CCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEec
Confidence 2799999999999
Q ss_pred ----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 469 ----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 469 ----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|.|+++|++|+|.| .+.+ +++..|.|+||+++|+||.++|||+|+|+|-|+|+|++|+|++.+.
T Consensus 643 P~EfqG~Vi~~L~kR~a~I---~~~d~~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~v 713 (721)
T KOG0465|consen 643 PEEFQGTVIGDLNKRKAQI---TGIDSSEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDV 713 (721)
T ss_pred chhhhhhhhhhhhhcccEE---ecccCCCceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHH
Confidence 999999999999999 8888 5899999999999999999999999999999999999999987654
No 7
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=2.1e-78 Score=697.72 Aligned_cols=447 Identities=31% Similarity=0.435 Sum_probs=395.6
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCC
Q 006610 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (639)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTP 127 (639)
.+..+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+++....+.|++++++|+|||
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTP 83 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTP 83 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCC
Confidence 34567899999999999999999999999888522 235899999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc--
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL-- 205 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~-- 205 (639)
||.||..++.++++.+|++|+||||.+|++.||+.+|.++.+.++|+|+|+||+|+.+++... +.+++.+.+...
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~---~~~~i~~~l~~~~~ 160 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYR---VVEQIKDRLGANPV 160 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHH---HHHHHHHHhCCCee
Confidence 999999999999999999999999999999999999999999999999999999998766532 222222211100
Q ss_pred ------------------------------------------------------------------------C--CCC--
Q 006610 206 ------------------------------------------------------------------------G--ATD-- 209 (639)
Q Consensus 206 ------------------------------------------------------------------------g--~~~-- 209 (639)
+ .+.
T Consensus 161 ~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~ 240 (693)
T PRK00007 161 PIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEE 240 (693)
T ss_pred eEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHH
Confidence 0 000
Q ss_pred ----------ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC--------------------CC
Q 006610 210 ----------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SL 259 (639)
Q Consensus 210 ----------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~--------------------~~ 259 (639)
...-+|++++||+++. |++.|||+|++++|+|.. ++
T Consensus 241 l~~~l~~~~~~~~~~Pv~~gSa~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 306 (693)
T PRK00007 241 IKAALRKATIANEIVPVLCGSAFKNK--------------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASD 306 (693)
T ss_pred HHHHHHHHHhcCcEEEEEecccccCc--------------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCC
Confidence 0013789999999888 999999999999999852 34
Q ss_pred CCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec
Q 006610 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (639)
Q Consensus 260 ~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~ 339 (639)
++||+++|||+.++++.|+++++|||||+|++||.|++...+ +.++|.+|+.+.|.++.++++|.||||++|.
T Consensus 307 ~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~-------~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~ 379 (693)
T PRK00007 307 DEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKG-------KKERIGRILQMHANKREEIKEVRAGDIAAAV 379 (693)
T ss_pred CCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCC-------ceeEeceeEEeccCCcccccccCCCcEEEEe
Confidence 679999999999999999999999999999999999976431 4679999999999999999999999999999
Q ss_pred CCCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEE
Q 006610 340 GMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYE 418 (639)
Q Consensus 340 gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~ 418 (639)
|++++.+|||||+.+.+..++++.+++|++++++.|.+. .+..||.++|+++.++||+|+|..+ ++++++
T Consensus 380 gl~~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~aIep~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~ 450 (693)
T PRK00007 380 GLKDTTTGDTLCDEKNPIILESMEFPEPVISVAVEPKTK---------ADQEKMGIALQKLAEEDPSFRVSTDEETGQTI 450 (693)
T ss_pred CCccCCcCCEeeCCCCccccCCCCCCCceEEEEEEECCc---------ccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEE
Confidence 999999999999887777788888999999999999864 5779999999999999999999987 788899
Q ss_pred EEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ec------C-----------------------------------
Q 006610 419 VQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-EN------G----------------------------------- 455 (639)
Q Consensus 419 v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~------g----------------------------------- 455 (639)
|+|+|||||+|++++|+++ |+|+.+++|+|+||| +. +
T Consensus 451 l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~ 530 (693)
T PRK00007 451 IAGMGELHLDIIVDRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIV 530 (693)
T ss_pred EEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeeccc
Confidence 9999999999999999976 999999999999999 20 0
Q ss_pred ---------------------------------------------------------------------ceeeeeeeEEE
Q 006610 456 ---------------------------------------------------------------------VKLEPIEEVTI 466 (639)
Q Consensus 456 ---------------------------------------------------------------------~~~EP~~~~~i 466 (639)
+++|||++++|
T Consensus 531 ~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI 610 (693)
T PRK00007 531 GGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEV 610 (693)
T ss_pred CCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEE
Confidence 36899999999
Q ss_pred EE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 467 EL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 467 ~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
.| +|+||++|++|||++ .+|+ +++++|+|.+|++|++||.++||++|+|+|+|++.|+||++++++.
T Consensus 611 ~~p~~~~g~v~~~L~~RRg~i---~~~~~~~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 683 (693)
T PRK00007 611 VTPEEYMGDVIGDLNSRRGQI---EGMEDRGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNV 683 (693)
T ss_pred EechhhhhhHHHHHHhCCCeE---ecccccCCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHH
Confidence 99 999999999999999 9988 4789999999999999999999999999999999999999998764
No 8
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.2e-77 Score=676.48 Aligned_cols=430 Identities=30% Similarity=0.421 Sum_probs=383.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC---CccccccccccccccceeEeeeeEEEeec--C---ceEEEEeCCCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWR--E---NELNMVDTPGHA 130 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~---~~i~iIDTPGh~ 130 (639)
++|||+|+||+|||||||+++|+..+|... ...+++|+.++|++||+|+.++...+.|+ + ++++|||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 589999999999999999999999987533 34688999999999999999999998885 3 789999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
||..++.++++.||++|+|+|+++|++.||...|..+.+.++|+|+|+||+|+..++.. ++.+++.+. ++...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~---~~~~el~~~---lg~~~- 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPE---RVKKEIEEV---IGLDA- 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHH---HHHHHHHHH---hCCCc-
Confidence 99999999999999999999999999999999998888899999999999999765542 333444333 23221
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeee
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVS 290 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~ 290 (639)
.+++++||++|. |+++||++|.+++|+|..++++||+++||++++++|.|+++++||++|+|+
T Consensus 155 ---~~vi~vSAktG~--------------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk 217 (595)
T TIGR01393 155 ---SEAILASAKTGI--------------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIK 217 (595)
T ss_pred ---ceEEEeeccCCC--------------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEe
Confidence 148999999999 999999999999999998899999999999999999999999999999999
Q ss_pred cCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec-C---CCCCCcCCeeeecCCC--cCCCCccC
Q 006610 291 VGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTIEL 364 (639)
Q Consensus 291 ~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~~~ 364 (639)
+||.|++.+.+ ...+|.+|..+.+.. .++++|.||||+.+. | ++++++|||||+.+++ .++|++++
T Consensus 218 ~Gd~v~~~~~~-------~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~ 289 (595)
T TIGR01393 218 PGDKIRFMSTG-------KEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKE 289 (595)
T ss_pred cCCEEEEecCC-------CeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcC
Confidence 99999998653 457899999776654 899999999998774 4 5678999999998876 48999999
Q ss_pred CCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCCC----ceEEEEecChhHHHHHHHHHHHc-Cc
Q 006610 365 DPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA----ETYEVQGRGELQLGILIENMRRE-GF 439 (639)
Q Consensus 365 ~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~----~~~~v~g~GelhL~vl~e~Lrre-g~ 439 (639)
++|++.+.+.|.++ .|.++|.++|+|++++||+|+++++++ ..|+++|+|+|||+|++|||+|| |+
T Consensus 290 ~~P~v~~~i~p~~~---------~d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~ 360 (595)
T TIGR01393 290 VKPMVFAGLYPIDT---------EDYEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNL 360 (595)
T ss_pred CCcEEEEEEEECCc---------ccHHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCC
Confidence 99999999998764 578999999999999999999998633 35788899999999999999987 99
Q ss_pred EEEEeCCeEEEEe--ecCc------------------eeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-C
Q 006610 440 ELSVSPPKVMYKT--ENGV------------------KLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-W 492 (639)
Q Consensus 440 ev~vs~P~V~yrE--~~g~------------------~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~ 492 (639)
++.+++|+|+||| .+|+ ++|||++++|.+ +|+||++|++|||++ ++|+ + +
T Consensus 361 ~v~~~~P~V~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~---~~~~~~~~~ 437 (595)
T TIGR01393 361 DLITTAPSVIYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQ---TNMEYLDPN 437 (595)
T ss_pred eeEEecCEEEEEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEE---eCcEEcCCC
Confidence 9999999999999 3455 899999999999 999999999999999 9999 4 6
Q ss_pred EEEEEEEeccccc-cchhhhccccceeceEeeeeccceeec
Q 006610 493 LWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 493 ~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
++.|+|.+|++|+ ++|.++|+|+|+|+|+|+++|+||+|.
T Consensus 438 ~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 438 RVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred eEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 9999999999996 999999999999999999999999983
No 9
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=8.4e-78 Score=678.21 Aligned_cols=432 Identities=30% Similarity=0.440 Sum_probs=385.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC---CccccccccccccccceeEeeeeEEEeec-----CceEEEEeCCC
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPG 128 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~e~ergiTi~~~~~~~~~~-----~~~i~iIDTPG 128 (639)
.+++|||+|+||+|||||||+++|++.+|... ...+++|+.++|++||+|+.++...+.|+ ++.++||||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 45799999999999999999999999988532 24689999999999999999999999886 68999999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
|.||..++.++++.+|++|+|||+++|++.||...|..+...++|+|+|+||+|+..++. .++.+++.+. ++..
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~---~~v~~ei~~~---lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP---ERVKQEIEDV---IGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH---HHHHHHHHHH---hCCC
Confidence 999999999999999999999999999999999999999889999999999999976554 2333444333 2332
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeee
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~ 288 (639)
. ..++++||++|+ |+++|+++|.+.+|+|..+.++||+++||++++++|.|+++++||++|+
T Consensus 158 ~----~~vi~iSAktG~--------------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~ 219 (600)
T PRK05433 158 A----SDAVLVSAKTGI--------------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGT 219 (600)
T ss_pred c----ceEEEEecCCCC--------------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCE
Confidence 1 238999999999 9999999999999999988999999999999999999999999999999
Q ss_pred eecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec-C---CCCCCcCCeeeecCCC--cCCCCc
Q 006610 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTI 362 (639)
Q Consensus 289 l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~ 362 (639)
|++||.|++.+.+ ...+|.+|+.+.+ ++.++++|.||||+.+. | ++++++|||||+.+++ .++|++
T Consensus 220 Lk~Gd~i~~~~~~-------~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~ 291 (600)
T PRK05433 220 LKKGDKIKMMSTG-------KEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGF 291 (600)
T ss_pred EecCCEEEEecCC-------ceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCC
Confidence 9999999998753 4578999986655 78999999999998774 4 5678999999998876 489999
Q ss_pred cCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCCCc----eEEEEecChhHHHHHHHHHHHc-
Q 006610 363 ELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAE----TYEVQGRGELQLGILIENMRRE- 437 (639)
Q Consensus 363 ~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~----~~~v~g~GelhL~vl~e~Lrre- 437 (639)
++++|++++.+.|.++ .+..+|.++|.|++++||+|++++++++ .|.++++|+|||+|++|||+||
T Consensus 292 ~~~~P~v~~~i~p~~~---------~d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 292 KEVKPMVFAGLYPVDS---------DDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred CCCCcEEEEEEEECCc---------cCHHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 9999999999998764 4779999999999999999999965332 3666669999999999999987
Q ss_pred CcEEEEeCCeEEEEe--ecC------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C
Q 006610 438 GFELSVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G 491 (639)
Q Consensus 438 g~ev~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~ 491 (639)
|+++.+++|+|+||| .+| .++|||++++|.+ +|+||++|++|||++ ++|+ +
T Consensus 363 ~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~---~~~~~~~ 439 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQ---KDMEYLG 439 (600)
T ss_pred CceEEEecCEEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEE---eCcEecC
Confidence 999999999999999 345 6899999999999 999999999999999 9999 5
Q ss_pred CEEEEEEEeccccc-cchhhhccccceeceEeeeeccceeec
Q 006610 492 WLWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 492 ~~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
+++.|+|.+|++|| ++|.++|+|+|+|+|+|+++|+||++.
T Consensus 440 ~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 440 NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 79999999999999 999999999999999999999999985
No 10
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4e-77 Score=687.99 Aligned_cols=448 Identities=32% Similarity=0.472 Sum_probs=396.6
Q ss_pred CCCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeC
Q 006610 53 STLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDT 126 (639)
Q Consensus 53 ~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDT 126 (639)
..+..+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+++....+.|++++++||||
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDT 82 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEEC
Confidence 345567899999999999999999999999887532 12489999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh--
Q 006610 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN-- 204 (639)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~-- 204 (639)
|||.+|..++.++++.+|++|+|||+.+|+..+++.+|+.+.+.++|+++|+||+|+.+++... +.+++.+.+..
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~---~~~~i~~~l~~~~ 159 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLR---VVNQIKQRLGANA 159 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH---HHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999998776533 22222222110
Q ss_pred ---------------------------------------------------------------------c--C--CCCc-
Q 006610 205 ---------------------------------------------------------------------L--G--ATDE- 210 (639)
Q Consensus 205 ---------------------------------------------------------------------~--g--~~~~- 210 (639)
+ + .+.+
T Consensus 160 ~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~ 239 (689)
T TIGR00484 160 VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEE 239 (689)
T ss_pred eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHH
Confidence 0 0 0000
Q ss_pred -----------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC-------------------CCC
Q 006610 211 -----------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-------------------SLD 260 (639)
Q Consensus 211 -----------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~-------------------~~~ 260 (639)
..-+|++++||+++. |++.|||+|++++|+|.. +++
T Consensus 240 l~~~l~~~~~~~~~~PV~~gSa~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 305 (689)
T TIGR00484 240 IKNAIRKGVLNCEFFPVLCGSAFKNK--------------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDD 305 (689)
T ss_pred HHHHHHHHHhcCCEEEEEeccccCCc--------------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCC
Confidence 112788999998888 999999999999999852 346
Q ss_pred CCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecC
Q 006610 261 APFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340 (639)
Q Consensus 261 ~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~g 340 (639)
+||+++|||+.++++.|+++++|||||+|+.||.|++...+ ..++|.+|+.+.|.++.+++++.||||++|.|
T Consensus 306 ~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~-------~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~g 378 (689)
T TIGR00484 306 EPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKN-------KKERVGRLVKMHANNREEIKEVRAGDICAAIG 378 (689)
T ss_pred CceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCC-------ceEEecceEEeecCCcccccccCCCCEEEEcC
Confidence 89999999999999999999999999999999999986432 45789999999999999999999999999999
Q ss_pred CCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEE
Q 006610 341 MTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEV 419 (639)
Q Consensus 341 l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v 419 (639)
++++.+||||++.+....++++.+++|++++++.|+++ .+..||.++|+++.++||+|+|..+ ++++++|
T Consensus 379 l~~~~~gdtl~~~~~~~~~~~~~~~~Pvl~~~i~p~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il 449 (689)
T TIGR00484 379 LKDTTTGDTLCDPKIDVILERMEFPEPVISLAVEPKTK---------ADQEKMGIALGKLAEEDPTFRTFTDPETGQTII 449 (689)
T ss_pred CCCCCCCCEEeCCCCccccCCCCCCCceEEEEEEECCc---------ccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEE
Confidence 99999999999887777788889999999999999875 4779999999999999999999987 7888999
Q ss_pred EecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ec------C------------------------------------
Q 006610 420 QGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-EN------G------------------------------------ 455 (639)
Q Consensus 420 ~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~------g------------------------------------ 455 (639)
+|+|||||+|++++|+++ |+|+++++|+|+||| +. +
T Consensus 450 ~g~GelHLei~~~~L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g 529 (689)
T TIGR00484 450 AGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGG 529 (689)
T ss_pred EEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCC
Confidence 999999999999999986 999999999999999 20 0
Q ss_pred -------------------------------------------------------------------ceeeeeeeEEEEE
Q 006610 456 -------------------------------------------------------------------VKLEPIEEVTIEL 468 (639)
Q Consensus 456 -------------------------------------------------------------------~~~EP~~~~~i~v 468 (639)
+++|||++++|.|
T Consensus 530 ~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~ 609 (689)
T TIGR00484 530 VIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEV 609 (689)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEe
Confidence 2689999999999
Q ss_pred ----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 469 ----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 469 ----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|+|+++|++|||++ .+|+ +++++|+|.+|++|++||+++||++|+|+|.|++.|+||++++++.
T Consensus 610 p~~~~g~v~~~L~~rrg~i---~~~~~~~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 680 (689)
T TIGR00484 610 PEEYMGDVMGDLSSRRGII---EGMEARGNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSV 680 (689)
T ss_pred cHHHhHhHHHHHHhcCCeE---ecccccCCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHH
Confidence 999999999999999 9998 4789999999999999999999999999999999999999998765
No 11
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=4.5e-77 Score=687.22 Aligned_cols=447 Identities=31% Similarity=0.432 Sum_probs=396.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+++....+.|++++++|||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 456899999999999999999999999887432 23589999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh-----
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----- 204 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~----- 204 (639)
.+|..++.++++.+|++|+|||+.+|++.||+.+|..+.+.++|.|+|+||+|+.+++.. ++.+++.+.+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~---~~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFF---RSVEQIKDRLGANAVPI 160 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHH---HHHHHHHHHhCCCceeE
Confidence 999999999999999999999999999999999999999999999999999999876543 233333222211
Q ss_pred -----------------------c------------------------------------------------CCCCc---
Q 006610 205 -----------------------L------------------------------------------------GATDE--- 210 (639)
Q Consensus 205 -----------------------~------------------------------------------------g~~~~--- 210 (639)
+ ..+.+
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 0 00000
Q ss_pred ---------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC-------------------CCCCC
Q 006610 211 ---------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-------------------SLDAP 262 (639)
Q Consensus 211 ---------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~-------------------~~~~p 262 (639)
..-+|++++||+++. |++.||++|++++|+|.. ++++|
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNK--------------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEP 306 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCc--------------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCC
Confidence 012689999999998 999999999999999842 45789
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
|.++|||+.++++.|+++++|||||+|++||.|++...+ +.++|.+|+.+.|.++.+++++.||||++|.|++
T Consensus 307 l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 379 (691)
T PRK12739 307 FAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKG-------KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLK 379 (691)
T ss_pred eEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCC-------ceEEecceEEEecCCcccccccCCCCEEEEeCCC
Confidence 999999999999999999999999999999999876432 4678999999999999999999999999999999
Q ss_pred CCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEe
Q 006610 343 KPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQG 421 (639)
Q Consensus 343 ~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g 421 (639)
++++|||||+.+....++++.+++|++.++++|.+. .|..||.++|.++.++||+|+|..+ ++++++|+|
T Consensus 380 ~~~~gdtl~~~~~~~~l~~~~~~~Pv~~~aiep~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g 450 (691)
T PRK12739 380 DTTTGDTLCDEKAPIILESMEFPEPVISLAVEPKTK---------ADQDKMGLALQKLAEEDPTFRVETDEETGQTIISG 450 (691)
T ss_pred cccCCCEEeCCCCccccCCCCCCCceEEEEEEECCc---------ccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEE
Confidence 999999999887667788889999999999999864 5789999999999999999999987 788899999
Q ss_pred cChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ecC--------------------------------------------
Q 006610 422 RGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG-------------------------------------------- 455 (639)
Q Consensus 422 ~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g-------------------------------------------- 455 (639)
+|||||+|++++|+++ |+++.+++|+|+||| +.+
T Consensus 451 ~GelHLei~~~rL~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~ 530 (691)
T PRK12739 451 MGELHLDIIVDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGV 530 (691)
T ss_pred ecHHHHHHHHHHHHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCc
Confidence 9999999999999975 999999999999999 210
Q ss_pred ------------------------------------------------------------------ceeeeeeeEEEEE-
Q 006610 456 ------------------------------------------------------------------VKLEPIEEVTIEL- 468 (639)
Q Consensus 456 ------------------------------------------------------------------~~~EP~~~~~i~v- 468 (639)
+++|||++++|.|
T Consensus 531 ~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p 610 (691)
T PRK12739 531 IPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTP 610 (691)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEc
Confidence 2689999999999
Q ss_pred ---cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCCCC
Q 006610 469 ---LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLLGN 538 (639)
Q Consensus 469 ---~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~~ 538 (639)
+|+||++|++|||++ ++++ ++++.|+|.+|++|++||.++||++|+|+|.|++.|+||++++++...
T Consensus 611 ~~~~g~v~~~L~~RRg~i---~~~~~~~~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~ 682 (691)
T PRK12739 611 EEYMGDVIGDLNRRRGQI---QGMEARGGAQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAE 682 (691)
T ss_pred hHhhhhHHHHHHhcCCeE---ECccccCCcEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHH
Confidence 999999999999999 9988 578899999999999999999999999999999999999999876543
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=8.8e-76 Score=679.64 Aligned_cols=461 Identities=30% Similarity=0.437 Sum_probs=392.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEee----cCceEEEEeCCC
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISW----RENELNMVDTPG 128 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~----~~~~i~iIDTPG 128 (639)
.+++|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++||+|+.++..++.| +++.+|||||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 46799999999999999999999999988633 2357899999999999999999998877 478999999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH--------HHHHHHHHHHHH
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE--------ERCDEVESLVFD 200 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~--------~~~~~v~~~i~~ 200 (639)
|.||..++.++++.+|++|+|||+.+|++.||+.+|+.+.+.++|+|+|+||+|+..+++ .++.++.+++..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~ 176 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNK 176 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976543 223333444444
Q ss_pred HHHhcCCCC-------ccccccEEecccccCCCCCccc--CC-Cc-------c---c-------ccchHHHHHHHHhhCC
Q 006610 201 LFANLGATD-------EQLDFPVLYASAKEGWASSTFT--KD-PP-------A---D-------VRNMSQLLDAIIRHVP 253 (639)
Q Consensus 201 l~~~~g~~~-------~~~~~Pvi~~SA~~g~~~~~~~--~~-~~-------~---~-------~~gl~~Lld~I~~~lP 253 (639)
++..+.... ...+-.++++||+.+|+..... .. .. . . -.=++.|||+|++++|
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lP 256 (731)
T PRK07560 177 LIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLP 256 (731)
T ss_pred HHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCC
Confidence 444322110 0112347889999998543100 00 00 0 0 0002379999999999
Q ss_pred CCCC-------------------------CCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCcee
Q 006610 254 PPKA-------------------------SLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKI 308 (639)
Q Consensus 254 ~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~ 308 (639)
+|.. ++++||.++|||+.++++.|+++++|||||+|++||.|++.+.+
T Consensus 257 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~------- 329 (731)
T PRK07560 257 NPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK------- 329 (731)
T ss_pred ChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC-------
Confidence 9952 44679999999999999999999999999999999999998642
Q ss_pred EEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcCCCCc-cCCCCeeeeeeeecCCCCCCCCCcc
Q 006610 309 EEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTI-ELDPPTISMTFGVNDSPLAGRDGTH 387 (639)
Q Consensus 309 ~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~-~~~~P~~~~~~~~~~~p~~~~~~~~ 387 (639)
..++|.+|+.+.|.+.+++++|.||||++|.|++++.+||||++.....+++++ .+|+|+++++++|.+.
T Consensus 330 ~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~--------- 400 (731)
T PRK07560 330 KKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNP--------- 400 (731)
T ss_pred CceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCH---------
Confidence 457899999999999999999999999999999999999999988766777776 4899999999999764
Q ss_pred cchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHH-cCcEEEEeCCeEEEEe-----ec------
Q 006610 388 LTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR-EGFELSVSPPKVMYKT-----EN------ 454 (639)
Q Consensus 388 ~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrr-eg~ev~vs~P~V~yrE-----~~------ 454 (639)
.|..||.++|.+++++||+|+|+.+ ++++++|+|+|||||+|++++|++ +|+++.+++|+|+||| ..
T Consensus 401 ~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~~ 480 (731)
T PRK07560 401 KDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGKS 480 (731)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEEC
Confidence 5889999999999999999999987 788899999999999999999976 4999999999999999 10
Q ss_pred -------------------------------------------------------------C------------------
Q 006610 455 -------------------------------------------------------------G------------------ 455 (639)
Q Consensus 455 -------------------------------------------------------------g------------------ 455 (639)
|
T Consensus 481 ~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~ 560 (731)
T PRK07560 481 PNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVME 560 (731)
T ss_pred CCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHH
Confidence 1
Q ss_pred -------------------------------------------------------------ceeeeeeeEEEEE----cc
Q 006610 456 -------------------------------------------------------------VKLEPIEEVTIEL----LS 470 (639)
Q Consensus 456 -------------------------------------------------------------~~~EP~~~~~i~v----~g 470 (639)
+++|||++++|.+ +|
T Consensus 561 av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g 640 (731)
T PRK07560 561 LIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMG 640 (731)
T ss_pred HHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhh
Confidence 2789999999999 99
Q ss_pred hHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 471 LCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 471 ~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|+++|++|||++ .+|+ +++.+|+|.+|+++++||+++||++|+|+|.|++.|+||+++++++
T Consensus 641 ~v~~~L~~rrg~i---~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 705 (731)
T PRK07560 641 AVTREIQGRRGKI---LDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPDSL 705 (731)
T ss_pred HHHHHHHhcCCee---eeeecCCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCHHH
Confidence 9999999999999 9998 5789999999999999999999999999999999999999998754
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-74 Score=668.44 Aligned_cols=445 Identities=30% Similarity=0.442 Sum_probs=393.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+++|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++|++|+......+.|++++++|||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 456799999999999999999999999877422 13478999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh-----
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----- 204 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~----- 204 (639)
.||..++.++++.+|++|+|+|+.+++..++..+|+.+...++|+++|+||+|+.+++... ..+++.+.+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~---~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFK---VLEDIEERFGKRPLPL 160 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHH---HHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999998877633 23333222110
Q ss_pred -------------------------------------------------------------------c--C--CCC----
Q 006610 205 -------------------------------------------------------------------L--G--ATD---- 209 (639)
Q Consensus 205 -------------------------------------------------------------------~--g--~~~---- 209 (639)
+ + .+.
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 0 0 000
Q ss_pred --------ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC------------------CCCCCc
Q 006610 210 --------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA------------------SLDAPF 263 (639)
Q Consensus 210 --------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~------------------~~~~p~ 263 (639)
...-+|++++||++|. |++.|||+|++++|+|.. ++++|+
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl 306 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNI--------------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPL 306 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCc--------------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCe
Confidence 0113899999999999 999999999999999952 457899
Q ss_pred eeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCC
Q 006610 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343 (639)
Q Consensus 264 ~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 343 (639)
.++|||+.++++.|+++++|||||+|++||.|++.+.+ ..++|.+|+.+.|.++.++++|.||||++|.|+++
T Consensus 307 ~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~-------~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~ 379 (687)
T PRK13351 307 LALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG-------KREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKE 379 (687)
T ss_pred EEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCC-------CceEeeeEEEEccCCeeECCccCCCCEEEEECccc
Confidence 99999999999999999999999999999999998642 45789999999999999999999999999999999
Q ss_pred CCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEec
Q 006610 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGR 422 (639)
Q Consensus 344 ~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~ 422 (639)
+.+|||||+......++++.+++|+++++++|.+. .+..||.++|+++.++||+|+|+.+ ++++++|+|+
T Consensus 380 ~~~gdtl~~~~~~~~~~~~~~~~pv~~~~Iep~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~ 450 (687)
T PRK13351 380 LETGDTLHDSADPVLLELLTFPEPVVSLAVEPERR---------GDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGM 450 (687)
T ss_pred CccCCEEeCCCCccccCCCCCCCccEEEEEEECCc---------ccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEe
Confidence 99999999887666777888999999999999764 5779999999999999999999987 7888999999
Q ss_pred ChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ec----------------------------------------------
Q 006610 423 GELQLGILIENMRRE-GFELSVSPPKVMYKT-EN---------------------------------------------- 454 (639)
Q Consensus 423 GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~---------------------------------------------- 454 (639)
|||||+|++++|+++ |+|+.+++|+|+||| +.
T Consensus 451 GelHLei~~~rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~ 530 (687)
T PRK13351 451 GELHLEVALERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAI 530 (687)
T ss_pred cHHHHHHHHHHHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcC
Confidence 999999999999986 999999999999999 21
Q ss_pred ------------------C----------------------------------------------ceeeeeeeEEEEE--
Q 006610 455 ------------------G----------------------------------------------VKLEPIEEVTIEL-- 468 (639)
Q Consensus 455 ------------------g----------------------------------------------~~~EP~~~~~i~v-- 468 (639)
| +++|||++++|.+
T Consensus 531 ~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~ 610 (687)
T PRK13351 531 PEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPT 610 (687)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEech
Confidence 1 2689999999999
Q ss_pred --cchHHHHhhccceEEeeeeccc--CCEEE-EEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 469 --LSLCIWYLSSLRFCFRLTRNMW--GWLWK-LSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 469 --~g~v~~~l~~Rrg~~~~~~~~~--~~~~~-i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|.|+++|++|||++ ++++ ++... |+|.+|++|++||.++||++|+|+|.|++.|+||++++++.
T Consensus 611 ~~~g~v~~~l~~rrg~i---~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 680 (687)
T PRK13351 611 EHVGDVLGDLSQRRGRI---EGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAV 680 (687)
T ss_pred HhhhhHHHHHHhCCcEE---eceecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHH
Confidence 999999999999999 9887 44444 99999999999999999999999999999999999998754
No 14
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=2.2e-72 Score=649.70 Aligned_cols=461 Identities=29% Similarity=0.430 Sum_probs=387.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEE----EeecCceEEEEeCCC
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTG----ISWRENELNMVDTPG 128 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~----~~~~~~~i~iIDTPG 128 (639)
.+++|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++||+|+.+...+ ++|++++++||||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 35689999999999999999999999887532 2346789999999999999987665 677899999999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHH--------HHHHHHHHHH
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER--------CDEVESLVFD 200 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~--------~~~v~~~i~~ 200 (639)
|.+|..++.++++.+|++|+|+|+.+|+..+|+.+|+.+...++|+++|+||+|+..+++.. +..+...+.+
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNK 175 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998765422 2222233334
Q ss_pred HHHhcCCC-------CccccccEEecccccCCCCCccc--CC-C----------cccccc-------hHHHHHHHHhhCC
Q 006610 201 LFANLGAT-------DEQLDFPVLYASAKEGWASSTFT--KD-P----------PADVRN-------MSQLLDAIIRHVP 253 (639)
Q Consensus 201 l~~~~g~~-------~~~~~~Pvi~~SA~~g~~~~~~~--~~-~----------~~~~~g-------l~~Lld~I~~~lP 253 (639)
++....-. ....+..+.++|++.+|+..... .. . .....+ ++.|||+|++++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lP 255 (720)
T TIGR00490 176 LIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLP 255 (720)
T ss_pred hhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCC
Confidence 43221000 00012345677887776431100 00 0 000112 5789999999999
Q ss_pred CCCC-------------------------CCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCcee
Q 006610 254 PPKA-------------------------SLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKI 308 (639)
Q Consensus 254 ~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~ 308 (639)
+|.. ++++||.++|||+.++++.|+++++|||||+|++||.|++.+.+
T Consensus 256 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~------- 328 (720)
T TIGR00490 256 SPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK------- 328 (720)
T ss_pred ChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC-------
Confidence 9941 33679999999999999999999999999999999999998653
Q ss_pred EEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCC-cCCCCc-cCCCCeeeeeeeecCCCCCCCCCc
Q 006610 309 EEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVT-TALPTI-ELDPPTISMTFGVNDSPLAGRDGT 386 (639)
Q Consensus 309 ~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~-~~l~~~-~~~~P~~~~~~~~~~~p~~~~~~~ 386 (639)
..++|.+|+.+.|.+..++++|.|||||+|.|++++.+|||||+.+.+ .+++++ .+++|+++++++|++.
T Consensus 329 ~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~-------- 400 (720)
T TIGR00490 329 AKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKNT-------- 400 (720)
T ss_pred CeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECCH--------
Confidence 467999999999999999999999999999999999999999987644 345655 4789999999999764
Q ss_pred ccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe----e-c-----
Q 006610 387 HLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT----E-N----- 454 (639)
Q Consensus 387 ~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE----~-~----- 454 (639)
.|..||.++|++++++||+|+++.+ ++++++|+|+|||||+|++++|+++ |+|+.+++|+|+||| . .
T Consensus 401 -~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~ 479 (720)
T TIGR00490 401 -KDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGK 479 (720)
T ss_pred -HHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEE
Confidence 5889999999999999999999987 7888999999999999999999886 999999999999999 1 1
Q ss_pred -----------------------------------------------------------C--------------------
Q 006610 455 -----------------------------------------------------------G-------------------- 455 (639)
Q Consensus 455 -----------------------------------------------------------g-------------------- 455 (639)
+
T Consensus 480 ~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~a 559 (720)
T TIGR00490 480 SPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKEL 559 (720)
T ss_pred cCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHH
Confidence 1
Q ss_pred ------------------------------------------------------------ceeeeeeeEEEEE----cch
Q 006610 456 ------------------------------------------------------------VKLEPIEEVTIEL----LSL 471 (639)
Q Consensus 456 ------------------------------------------------------------~~~EP~~~~~i~v----~g~ 471 (639)
++||||++++|.+ +|+
T Consensus 560 v~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~ 639 (720)
T TIGR00490 560 ILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGA 639 (720)
T ss_pred HHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhH
Confidence 2789999999999 999
Q ss_pred HHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 472 CIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 472 v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
|+++|++|||++ ++|+ ++.+.|+|.+|++|++||.++||++|+|+|.|++.|+||+++|+++
T Consensus 640 v~~~L~~RRg~i---~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~~ 703 (720)
T TIGR00490 640 ATREIQNRRGQI---LEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQNL 703 (720)
T ss_pred HHHHHhhCCcee---eeeccCCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHHH
Confidence 999999999999 9998 4789999999999999999999999999999999999999998664
No 15
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.2e-71 Score=642.81 Aligned_cols=435 Identities=32% Similarity=0.455 Sum_probs=386.0
Q ss_pred EcCCCCCHHHHHHHHHHHcCCCCC------ccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 66 IAHVDHGKTTLMDRLLRQCGADIP------HERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 66 iGh~~~GKTTLv~~Ll~~~g~~~~------~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+||+|||||||+++|+..+|.... ..+++|+.+.|++||+|+......+.|+++.++|||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999999885322 34899999999999999999999999999999999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh---------------
Q 006610 140 VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--------------- 204 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~--------------- 204 (639)
++.+|++|+|+|+.++...++..+|+.+...++|+++|+||+|+..++... +.+++.+.+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~---~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFR---VLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH---HHHHHHHHHCCCceeEEecccCCCCc
Confidence 999999999999999999999999999999999999999999998766532 22222222110
Q ss_pred -------------------------------------------c-CCCC--------------------------ccccc
Q 006610 205 -------------------------------------------L-GATD--------------------------EQLDF 214 (639)
Q Consensus 205 -------------------------------------------~-g~~~--------------------------~~~~~ 214 (639)
+ ..++ ...-+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 0 0000 00137
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC-----------------CCCCCceeEEEeeeeecccc
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-----------------SLDAPFQMLVTMMEKDFYLG 277 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~-----------------~~~~p~~~~V~~~~~d~~~G 277 (639)
|++++||++|. |++.||++|+.++|+|.. ++++|+.++|||+.++++.|
T Consensus 238 Pv~~gSA~~~~--------------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G 303 (668)
T PRK12740 238 PVFCGSALKNK--------------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVG 303 (668)
T ss_pred EEEeccccCCc--------------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCC
Confidence 99999999999 999999999999999952 55789999999999999999
Q ss_pred eEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCc
Q 006610 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (639)
Q Consensus 278 ~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 357 (639)
+++++||++|+|++||+|++.+.+ ..++|.+|+.++|.+++++++|.||||++|.|++++.+||||++.....
T Consensus 304 ~i~~~RV~sG~L~~g~~v~~~~~~-------~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~ 376 (668)
T PRK12740 304 KLSLVRVYSGTLKKGDTLYNSGTG-------KKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPI 376 (668)
T ss_pred cEEEEEEeeeEEcCCCEEEeCCCC-------CcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCcc
Confidence 999999999999999999998642 4578999999999999999999999999999999999999999877667
Q ss_pred CCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHH
Q 006610 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (639)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrr 436 (639)
.++++.+++|++++++.|++. .|..+|.++|.++.++||+|+|..+ ++++++|+|+|||||+|++++|++
T Consensus 377 ~~~~~~~~~P~~~~~i~p~~~---------~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~ 447 (668)
T PRK12740 377 LLEPMEFPEPVISLAIEPKDK---------GDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKR 447 (668)
T ss_pred ccCCCCCCCcceEEEEEECCc---------chHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHH
Confidence 888899999999999999864 5789999999999999999999987 788899999999999999999998
Q ss_pred c-CcEEEEeCCeEEEEe-ec------------------------------------------------------------
Q 006610 437 E-GFELSVSPPKVMYKT-EN------------------------------------------------------------ 454 (639)
Q Consensus 437 e-g~ev~vs~P~V~yrE-~~------------------------------------------------------------ 454 (639)
+ |+++.+++|+|+||| +.
T Consensus 448 ~~~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~ 527 (668)
T PRK12740 448 EYGVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVRE 527 (668)
T ss_pred HhCceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHH
Confidence 6 999999999999999 11
Q ss_pred ----C----------------------------------------------ceeeeeeeEEEEE----cchHHHHhhccc
Q 006610 455 ----G----------------------------------------------VKLEPIEEVTIEL----LSLCIWYLSSLR 480 (639)
Q Consensus 455 ----g----------------------------------------------~~~EP~~~~~i~v----~g~v~~~l~~Rr 480 (639)
| +++|||++++|.+ .|.|+++|++||
T Consensus 528 a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 607 (668)
T PRK12740 528 ALEKGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRR 607 (668)
T ss_pred HHhcCCcCCCceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCC
Confidence 2 2789999999999 999999999999
Q ss_pred eEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 481 FCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 481 g~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
|++ ++++ ++.++|+|.+|+++++||+++||++|+|+|+|++.|+||++++++.
T Consensus 608 g~i---~~~~~~~~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~ 662 (668)
T PRK12740 608 GRI---LGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNV 662 (668)
T ss_pred CeE---eccccCCCCEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHH
Confidence 999 8887 3449999999999999999999999999999999999999998653
No 16
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.1e-71 Score=577.97 Aligned_cols=434 Identities=30% Similarity=0.429 Sum_probs=383.9
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC---CccccccccccccccceeEeeeeEEEeecC-----ceEEEEeC
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWRE-----NELNMVDT 126 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----~~i~iIDT 126 (639)
...+++||++|++|.|||||||.++|+..+|.-. ..+.++|+++.|+||||||.+....+.|+. |.+|||||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 3456899999999999999999999999998643 346899999999999999999999998863 89999999
Q ss_pred CCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
|||.||..||.|+|..|+|+||||||+.|++.||..-...|.+.++.+|.|+||+|++.+++++ +.+++.+. +|
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adper---vk~eIe~~---iG 157 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPER---VKQEIEDI---IG 157 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHH---HHHHHHHH---hC
Confidence 9999999999999999999999999999999999999999999999999999999999999965 55555554 34
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEe
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSS 286 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~s 286 (639)
.+... .+.+|||+|. |++++|++|++.+|+|..++++|+++++|+.++|+|.|.+++.||+.
T Consensus 158 id~~d----av~~SAKtG~--------------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~d 219 (603)
T COG0481 158 IDASD----AVLVSAKTGI--------------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFD 219 (603)
T ss_pred CCcch----heeEecccCC--------------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEee
Confidence 44322 7899999999 99999999999999999999999999999999999999999999999
Q ss_pred eeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe-cC---CCCCCcCCeeeecCCC--cCCC
Q 006610 287 GVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV-AG---MTKPSIGHTVANTEVT--TALP 360 (639)
Q Consensus 287 G~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i-~g---l~~~~~Gdtl~~~~~~--~~l~ 360 (639)
|++++||+|....++ +...|..+-.+.- +.+..+++.|||+.-+ +| +.++++||||+...+| .+||
T Consensus 220 G~ik~gdki~~m~tg-------~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~Lp 291 (603)
T COG0481 220 GTLKKGDKIRMMSTG-------KEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLP 291 (603)
T ss_pred ceecCCCEEEEEecC-------CEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCC
Confidence 999999999999764 3445555555443 6788999999999644 44 5678899999965554 6899
Q ss_pred CccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC----CCceEEEEecChhHHHHHHHHHHH
Q 006610 361 TIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG----MAETYEVQGRGELQLGILIENMRR 436 (639)
Q Consensus 361 ~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~----~~~~~~v~g~GelhL~vl~e~Lrr 436 (639)
.++-..|++..-+.|-++ .+.+.|+++|.|+..+|.+|.+|+. .+-.|+++++|-|||+|+.|||+|
T Consensus 292 Gfk~~~P~Vf~GlyPid~---------~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 292 GFKEVKPMVFAGLYPVDS---------DDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CCCcCCceEEEeecccCh---------hHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 999888888777777554 4668999999999999999999986 356799999999999999999988
Q ss_pred c-CcEEEEeCCeEEEEe--ecC------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc-
Q 006610 437 E-GFELSVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW- 490 (639)
Q Consensus 437 e-g~ev~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~- 490 (639)
| ++++..+.|.|+|+- .+| ...|||.+++|.+ .|.||+.+..+||.. .+|+
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~---~~m~y 439 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQ---IDMEY 439 (603)
T ss_pred hhCcceEecCCceEEEEEEcCCcEEEecChHhCCChhhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCce---ecceE
Confidence 7 999999999999996 344 2679999999999 999999999999999 9999
Q ss_pred -C-CEEEEEEEeccccc-cchhhhccccceeceEeeeeccceeec
Q 006610 491 -G-WLWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 491 -~-~~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
+ .++.|.|.+|++|+ ++|-..|+|.|+|.++|..+|.+|++.
T Consensus 440 l~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~ 484 (603)
T COG0481 440 LDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRES 484 (603)
T ss_pred ecCceEEEEEecchHHHHHHHhHhhhccccceeeecccccccccc
Confidence 6 89999999999995 899999999999999999999999873
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=4.6e-71 Score=647.02 Aligned_cols=468 Identities=27% Similarity=0.389 Sum_probs=387.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeec---------------
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWR--------------- 117 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~--------------- 117 (639)
++++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+...++.|.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 56899999999999999999999999988532 23567999999999999999999999884
Q ss_pred -CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC----CH----
Q 006610 118 -ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV----SE---- 188 (639)
Q Consensus 118 -~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~----~~---- 188 (639)
++.|||||||||.||.+++.++++.+|++|+||||.+|++.||+.+|+++.+.++|+|+|+||||+... ++
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999999731 12
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-ccccc-c----EEecccccCCCCCc----------------------c-----c----
Q 006610 189 ERCDEVESLVFDLFANLGATD-EQLDF-P----VLYASAKEGWASST----------------------F-----T---- 231 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~-~~~~~-P----vi~~SA~~g~~~~~----------------------~-----~---- 231 (639)
..+..+++++...+..++... ....+ | |+++|++.||+... | .
T Consensus 176 ~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 176 QTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 345666666664443332110 00001 2 56777766642110 0 0
Q ss_pred -----C--CC------------c-------------------ccc--------------------------cchHHHHHH
Q 006610 232 -----K--DP------------P-------------------ADV--------------------------RNMSQLLDA 247 (639)
Q Consensus 232 -----~--~~------------~-------------------~~~--------------------------~gl~~Lld~ 247 (639)
+ .+ . .+. .+.+.|||+
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 0 00 0 000 123789999
Q ss_pred HHhhCCCCCC-------------------------CCCCCceeEEEeeeeecccce-EEEEEEEeeeeecCCEEEEeecc
Q 006610 248 IIRHVPPPKA-------------------------SLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLRIT 301 (639)
Q Consensus 248 I~~~lP~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-i~~grV~sG~l~~gd~v~~~~~~ 301 (639)
|++++|+|.. ++++|+.++|||+..+++.|+ ++|+|||||+|+.||.|++.+.+
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 9999999941 235799999999999998898 99999999999999999865432
Q ss_pred CC-CC-ceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCc-CCeeeecC--CCcCCCCccCC-CCeeeeeeee
Q 006610 302 DS-GT-EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSI-GHTVANTE--VTTALPTIELD-PPTISMTFGV 375 (639)
Q Consensus 302 ~~-~~-~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~-Gdtl~~~~--~~~~l~~~~~~-~P~~~~~~~~ 375 (639)
.. +. +....++|.+|+.++|.+++++++|.||||++|.|+++..+ |||||+.. .+.+++++.++ +|+++++++|
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIeP 495 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQC 495 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEEE
Confidence 11 10 01223589999999999999999999999999999988655 99999876 45677788888 9999999999
Q ss_pred cCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCCCceEEEEecChhHHHHHHHHHHH-c--CcEEEEeCCeEEEEe
Q 006610 376 NDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRR-E--GFELSVSPPKVMYKT 452 (639)
Q Consensus 376 ~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~g~GelhL~vl~e~Lrr-e--g~ev~vs~P~V~yrE 452 (639)
.+. .|..||.++|.++.++||+|++...++++++|+|||||||+|++++|++ + |+++++++|+|+|||
T Consensus 496 ~~~---------~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrE 566 (843)
T PLN00116 496 KNA---------SDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRE 566 (843)
T ss_pred CCh---------hhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEe
Confidence 764 5889999999999999999999766778899999999999999999985 7 999999999999999
Q ss_pred -e----------------------------c---------------------------------------------C---
Q 006610 453 -E----------------------------N---------------------------------------------G--- 455 (639)
Q Consensus 453 -~----------------------------~---------------------------------------------g--- 455 (639)
+ . |
T Consensus 567 TI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~ 646 (843)
T PLN00116 567 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNM 646 (843)
T ss_pred cccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceE
Confidence 2 0 0
Q ss_pred -----------------------------------------------------------------------------cee
Q 006610 456 -----------------------------------------------------------------------------VKL 458 (639)
Q Consensus 456 -----------------------------------------------------------------------------~~~ 458 (639)
++|
T Consensus 647 ~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~Ll 726 (843)
T PLN00116 647 VVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLL 726 (843)
T ss_pred EEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEe
Confidence 278
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc---C-CEEEEEEEeccccccchhhhccccceeceEeeeecccee
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (639)
|||++++|.| +|+|+++|++|||++ ++++ + +.++|+|.+|++|++||+++||++|+|+|.|++.|+||+
T Consensus 727 EPi~~veI~~p~~~~G~V~~dL~~RRG~i---~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~ 803 (843)
T PLN00116 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHV---FEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 803 (843)
T ss_pred eceeEEEEEccHHHHhHHHHHHHhcCCcc---ceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeE
Confidence 9999999999 999999999999999 8877 3 458999999999999999999999999999999999999
Q ss_pred eccCCC
Q 006610 531 KHRGLL 536 (639)
Q Consensus 531 ~~~g~~ 536 (639)
+++++.
T Consensus 804 ~v~~dp 809 (843)
T PLN00116 804 MMSSDP 809 (843)
T ss_pred ECCCCC
Confidence 999876
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=9.8e-70 Score=634.57 Aligned_cols=468 Identities=27% Similarity=0.370 Sum_probs=385.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeec----------CceEE
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWR----------ENELN 122 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~----------~~~i~ 122 (639)
.+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+....+.|. ++.||
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 46799999999999999999999999988532 23467999999999999999998888886 67899
Q ss_pred EEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC----CCCH----HHHHHH
Q 006610 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP----AVSE----ERCDEV 194 (639)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~----~~~~----~~~~~v 194 (639)
|+|||||.||.+++.++++.+|++|+||||.+|++.||+.+|+++.+.++|+|+|+||||+. +.++ ..+..+
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~i 175 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKT 175 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 3232 334566
Q ss_pred HHHHHHHHHhcCCCC------ccccccEEecccccCCCCCc----------------------c-----cC-------C-
Q 006610 195 ESLVFDLFANLGATD------EQLDFPVLYASAKEGWASST----------------------F-----TK-------D- 233 (639)
Q Consensus 195 ~~~i~~l~~~~g~~~------~~~~~Pvi~~SA~~g~~~~~----------------------~-----~~-------~- 233 (639)
++++...+..++... .....-+.++|+..||+... | .+ .
T Consensus 176 i~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~ 255 (836)
T PTZ00416 176 IENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDE 255 (836)
T ss_pred HHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEecc
Confidence 677766665332110 00111245556655443110 0 00 0
Q ss_pred -C----------------------------c-------cc---------c--c---c------------hHHHHHHHHhh
Q 006610 234 -P----------------------------P-------AD---------V--R---N------------MSQLLDAIIRH 251 (639)
Q Consensus 234 -~----------------------------~-------~~---------~--~---g------------l~~Lld~I~~~ 251 (639)
+ + .+ . . + ++.|||+|+++
T Consensus 256 ~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~ 335 (836)
T PTZ00416 256 TNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDH 335 (836)
T ss_pred CCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 0 0 00 0 0 1 26799999999
Q ss_pred CCCCCC-------------------------CCCCCceeEEEeeeeecccce-EEEEEEEeeeeecCCEEEEeeccCCCC
Q 006610 252 VPPPKA-------------------------SLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLRITDSGT 305 (639)
Q Consensus 252 lP~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-i~~grV~sG~l~~gd~v~~~~~~~~~~ 305 (639)
+|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++.+.+....
T Consensus 336 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~~ 415 (836)
T PTZ00416 336 LPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVPG 415 (836)
T ss_pred CCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCCC
Confidence 999941 235699999999999999999 899999999999999999764431110
Q ss_pred --ceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCC--CCcCCeeeecCCCcCCCCccCC-CCeeeeeeeecCCCC
Q 006610 306 --EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK--PSIGHTVANTEVTTALPTIELD-PPTISMTFGVNDSPL 380 (639)
Q Consensus 306 --~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~--~~~Gdtl~~~~~~~~l~~~~~~-~P~~~~~~~~~~~p~ 380 (639)
++....+|.+|+.+.|.+..++++|.|||||+|.|+++ +++| |||+.....+++++.++ +|++.++++|.+.
T Consensus 416 ~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIep~~~-- 492 (836)
T PTZ00416 416 KKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEPKNP-- 492 (836)
T ss_pred CcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEEECCH--
Confidence 00011259999999999999999999999999999998 7899 99988766777788886 9999999999764
Q ss_pred CCCCCcccchhhHHhHhhhhhccCceEEEEeCCCceEEEEecChhHHHHHHHHHHH-c-CcEEEEeCCeEEEEe-e----
Q 006610 381 AGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRR-E-GFELSVSPPKVMYKT-E---- 453 (639)
Q Consensus 381 ~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~g~GelhL~vl~e~Lrr-e-g~ev~vs~P~V~yrE-~---- 453 (639)
.|..||.++|+++.++||+|++...++++++|+|+||+||++++++|++ + |+++.+++|+|+||| +
T Consensus 493 -------~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~~s 565 (836)
T PTZ00416 493 -------KDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTEES 565 (836)
T ss_pred -------HHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecccc
Confidence 5889999999999999999999766778899999999999999999986 5 999999999999999 2
Q ss_pred ---------------------------------------------c----------------------------------
Q 006610 454 ---------------------------------------------N---------------------------------- 454 (639)
Q Consensus 454 ---------------------------------------------~---------------------------------- 454 (639)
.
T Consensus 566 ~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~~~~ 645 (836)
T PTZ00416 566 SQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVDVTK 645 (836)
T ss_pred cceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEecCC
Confidence 0
Q ss_pred C----------------------------------------------------------------------ceeeeeeeE
Q 006610 455 G----------------------------------------------------------------------VKLEPIEEV 464 (639)
Q Consensus 455 g----------------------------------------------------------------------~~~EP~~~~ 464 (639)
+ ++||||+++
T Consensus 646 ~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~v 725 (836)
T PTZ00416 646 GVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMFLV 725 (836)
T ss_pred cccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEEE
Confidence 1 278999999
Q ss_pred EEEE----cchHHHHhhccceEEeeeeccc--CC--EEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 465 TIEL----LSLCIWYLSSLRFCFRLTRNMW--GW--LWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 465 ~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~--~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|.| +|+|+++|++|||++ ++++ ++ .++|+|.+|++|++||.++||++|+|+|.|++.|+||+++++++
T Consensus 726 eI~~p~~~lg~V~~dL~~RRG~i---~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp 802 (836)
T PTZ00416 726 DITAPEDAMGGIYSVLNRRRGVV---IGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVPGDP 802 (836)
T ss_pred EEEEcHHHHhHHHHHHHhcCCCc---cCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECCCCC
Confidence 9999 999999999999999 9887 33 58999999999999999999999999999999999999999876
Q ss_pred C
Q 006610 537 G 537 (639)
Q Consensus 537 ~ 537 (639)
-
T Consensus 803 ~ 803 (836)
T PTZ00416 803 L 803 (836)
T ss_pred C
Confidence 4
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=1.6e-61 Score=537.68 Aligned_cols=362 Identities=25% Similarity=0.364 Sum_probs=316.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----------CccccccccccccccceeEeeeeEEEeecCceEEEEeCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTP 127 (639)
.++|||+|+||+|||||||+++|+..+|... ...+++|+++.|++||+|+.++...+.|+++++||||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4689999999999999999999999887532 123568999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~--- 204 (639)
||.||..++.++++.+|++|+|||+.+|+..+++.+|+.+...++|+|+|+||+|+.++++.. +.+++.+.+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~---~l~~i~~~l~~~~~ 164 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLE---LLDEIEEVLGIACA 164 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHH---HHHHHHHHhCCCCe
Confidence 999999999999999999999999999999999999999999999999999999998877633 22222221110
Q ss_pred -------------------------c----C-----------CCC---------c-------------------------
Q 006610 205 -------------------------L----G-----------ATD---------E------------------------- 210 (639)
Q Consensus 205 -------------------------~----g-----------~~~---------~------------------------- 210 (639)
+ + .++ +
T Consensus 165 p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~ 244 (526)
T PRK00741 165 PITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFL 244 (526)
T ss_pred eEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHh
Confidence 0 0 000 0
Q ss_pred -cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCC---------CCCCceeEEEeee---eecccc
Q 006610 211 -QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS---------LDAPFQMLVTMME---KDFYLG 277 (639)
Q Consensus 211 -~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~---------~~~p~~~~V~~~~---~d~~~G 277 (639)
..-+||+++||++++ |+++|||+|++++|+|... .+.+|+++|||+. .+++.|
T Consensus 245 ~~~~~PV~~GSA~~n~--------------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~g 310 (526)
T PRK00741 245 AGELTPVFFGSALNNF--------------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRD 310 (526)
T ss_pred cCCeEEEEEeecccCc--------------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCc
Confidence 012899999999999 9999999999999999532 2467999999998 466999
Q ss_pred eEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCc
Q 006610 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (639)
Q Consensus 278 ~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 357 (639)
+++|+||+||+++.|+.|++.+.+ +.+|+.+++.+.|.++.++++|.||||+++.|++++++|||||+.+ +.
T Consensus 311 rlafvRV~sG~l~~g~~v~~~~~~-------k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~ 382 (526)
T PRK00741 311 RIAFVRVCSGKFEKGMKVRHVRTG-------KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KL 382 (526)
T ss_pred eEEEEEEeccEECCCCEEEeccCC-------ceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-cc
Confidence 999999999999999999988642 5789999999999999999999999999999999999999999876 66
Q ss_pred CCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHH
Q 006610 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (639)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrr 436 (639)
.++++++++|++++++.|.++ .+..||..+|+|+++|| ++++.++ .+++++|+|+|+|||+|+++||++
T Consensus 383 ~~~~i~~~~P~~~~~v~p~~~---------~d~~kl~~aL~~L~eED-~l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ 452 (526)
T PRK00741 383 KFTGIPNFAPELFRRVRLKNP---------LKQKQLQKGLVQLSEEG-AVQVFRPLDNNDLILGAVGQLQFEVVAHRLKN 452 (526)
T ss_pred ccCCCCCCCccEEEEEEECCc---------hhHHHHHHHHHHHhhcC-CeEEEECCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 788999999999999999874 68899999999999999 5999988 778899999999999999999987
Q ss_pred c-CcEEEEeCCeEEEEe-ec
Q 006610 437 E-GFELSVSPPKVMYKT-EN 454 (639)
Q Consensus 437 e-g~ev~vs~P~V~yrE-~~ 454 (639)
+ |+++.+++|+|++-. ++
T Consensus 453 ey~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 453 EYNVEAIYEPVGVATARWVE 472 (526)
T ss_pred HhCCEEEEecCCccEEEEEe
Confidence 6 999999999999865 43
No 20
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-64 Score=510.03 Aligned_cols=444 Identities=25% Similarity=0.364 Sum_probs=378.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD 131 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d 131 (639)
.++|||+|++|+|+||||..+++++.+|... ...++.|+...|++|||||.+....+.|+++++|+||||||.|
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 4699999999999999999999999998532 3468999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHH-HHHHHHH------------
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERC-DEVESLV------------ 198 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~-~~v~~~i------------ 198 (639)
|.-+++|.++..||++.|+|+..|+++||..+|+++.++++|.++|+||||+..++++.. +.+.+.+
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ 194 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIG 194 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999988877432 2222211
Q ss_pred ---------HHHHH---------------------------------------------------------hcCCCCc--
Q 006610 199 ---------FDLFA---------------------------------------------------------NLGATDE-- 210 (639)
Q Consensus 199 ---------~~l~~---------------------------------------------------------~~g~~~~-- 210 (639)
.|++. ++..+.+
T Consensus 195 eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i 274 (753)
T KOG0464|consen 195 EAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKI 274 (753)
T ss_pred ccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccccc
Confidence 11110 0000000
Q ss_pred ---------------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC-------CCCCCceeEEE
Q 006610 211 ---------------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-------SLDAPFQMLVT 268 (639)
Q Consensus 211 ---------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~-------~~~~p~~~~V~ 268 (639)
+...|+.++||.++. |+++|+|++.-|+|+|.. +-...++++.|
T Consensus 275 ~a~elksai~~lt~aq~a~~i~cgsaiknk--------------giqplldavtmylpspeernyeflqwykddlcalaf 340 (753)
T KOG0464|consen 275 DAEELKSAIHELTCAQKAAPILCGSAIKNK--------------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAF 340 (753)
T ss_pred CHHHHHHHHHHHhhhhhhcceehhhhhccc--------------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhh
Confidence 011678888888877 999999999999999964 23567899999
Q ss_pred eeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCC
Q 006610 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGH 348 (639)
Q Consensus 269 ~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gd 348 (639)
|+.+|+..|.++|.|||+|+++.+-.|.+.+. ...+++.+++.+...+..+++++.||+|...+|++...+||
T Consensus 341 kvlhdkqrg~l~fmriysgsi~~~~ai~nin~-------~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgd 413 (753)
T KOG0464|consen 341 KVLHDKQRGPLSFMRIYSGSIHNNLAIFNING-------MCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGD 413 (753)
T ss_pred hhhcccccCceeEEEEecccccCceeeeeccc-------ccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCC
Confidence 99999999999999999999999999998753 25678999999999999999999999999999999999999
Q ss_pred eeeecCC------------------------CcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccC
Q 006610 349 TVANTEV------------------------TTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETN 404 (639)
Q Consensus 349 tl~~~~~------------------------~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d 404 (639)
|+..... ..-+..+++|+|++...++|.+- .....+-.+|.-+..+|
T Consensus 414 tivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~---------~k~~d~ehale~lqred 484 (753)
T KOG0464|consen 414 TIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL---------RKLNDFEHALECLQRED 484 (753)
T ss_pred eEEecchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc---------ccchhHHHHHHHHhccC
Confidence 9964321 12367889999999999987432 12245667888888899
Q ss_pred ceEEEEeC-CCceEEEEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-e-----------cC---------------
Q 006610 405 LAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E-----------NG--------------- 455 (639)
Q Consensus 405 ~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~-----------~g--------------- 455 (639)
|++++..+ ++++.++.||||||++++-+|++|+ |++.-+++-+|.||| + +|
T Consensus 485 pslkir~d~dsgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear 564 (753)
T KOG0464|consen 485 PSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEAR 564 (753)
T ss_pred CceeEEecCCCCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEee
Confidence 99999988 7888999999999999999999987 999999999999998 2 11
Q ss_pred --------------------------------------------------------------------------------
Q 006610 456 -------------------------------------------------------------------------------- 455 (639)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (639)
T Consensus 565 ~~~tqa~ip~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkc 644 (753)
T KOG0464|consen 565 LEETQAHIPFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKC 644 (753)
T ss_pred eccccccccceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHH
Confidence
Q ss_pred ----------ceeeeeeeEEEEE-----cchHHHHhhccceEEeeeeccc---C-CEEEEEEEeccccccchhhhccccc
Q 006610 456 ----------VKLEPIEEVTIEL-----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDT 516 (639)
Q Consensus 456 ----------~~~EP~~~~~i~v-----~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T 516 (639)
+++||+++++|++ ...|+.+|.+|||.+ ...+ + ...||-+.+|++|+.||+..+|++|
T Consensus 645 vqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~---e~~~aredneirri~~~lplaei~~~s~~lrtlt 721 (753)
T KOG0464|consen 645 VQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHF---EEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLT 721 (753)
T ss_pred HHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccc---hhcccccccchheeeEeeeHHHhhcHHHHHHHHh
Confidence 2689999999999 888999999999999 6666 2 4567999999999999999999999
Q ss_pred eeceEeeeeccceeeccC
Q 006610 517 RGTGFMHRAFLKYEKHRG 534 (639)
Q Consensus 517 ~G~g~~~~~f~~y~~~~g 534 (639)
+|-|.|..+|.+|+.+..
T Consensus 722 sg~a~~ale~~~yqamn~ 739 (753)
T KOG0464|consen 722 SGFADFALEFRGYQAMNE 739 (753)
T ss_pred cccceEEEEecchhhcCh
Confidence 999999999999998753
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=4.2e-60 Score=526.44 Aligned_cols=360 Identities=24% Similarity=0.344 Sum_probs=314.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----------CccccccccccccccceeEeeeeEEEeecCceEEEEeCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTP 127 (639)
.++|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++||+|+.++...+.|+++++||||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5689999999999999999999999877421 124789999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~--- 204 (639)
||.||..++.++++.+|++|+|||+.+|+..+++.+|+.+...++|+|+|+||+|+..+++.++. +++.+.+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll---~~i~~~l~~~~~ 165 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELL---DEVENELKINCA 165 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHH---HHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999887764432 222222110
Q ss_pred -------------------------c----CC-----------CC-----------------------------------
Q 006610 205 -------------------------L----GA-----------TD----------------------------------- 209 (639)
Q Consensus 205 -------------------------~----g~-----------~~----------------------------------- 209 (639)
+ +. ..
T Consensus 166 ~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 245 (527)
T TIGR00503 166 PITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFH 245 (527)
T ss_pred cEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHh
Confidence 0 00 00
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCC---------CCCCceeEEEeeee--e-cccc
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS---------LDAPFQMLVTMMEK--D-FYLG 277 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~---------~~~p~~~~V~~~~~--d-~~~G 277 (639)
...-+||+++||.+++ |++.|||+|++++|+|... .++||+++|||+.. | ++.|
T Consensus 246 ~~~~~PV~~GSA~~n~--------------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~g 311 (527)
T TIGR00503 246 GGEMTPVFFGTALGNF--------------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRD 311 (527)
T ss_pred cCCeeEEEEeecccCc--------------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCc
Confidence 0012799999999999 9999999999999999642 24789999999988 7 5999
Q ss_pred eEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCc
Q 006610 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (639)
Q Consensus 278 ~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 357 (639)
+++|+||+||+|+.|+.|++.+.+ +.+|+++++.+.|.++.++++|.||||+++.|++++++|||||+.+ +.
T Consensus 312 riaf~RV~sG~l~~g~~v~~~~~~-------k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~ 383 (527)
T TIGR00503 312 RVAFMRVVSGKYEKGMKLKHVRTG-------KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KI 383 (527)
T ss_pred eEEEEEEeeeEEcCCCEEEecCCC-------CcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ce
Confidence 999999999999999999988642 5689999999999999999999999999999999999999999844 56
Q ss_pred CCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHH
Q 006610 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (639)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrr 436 (639)
.++++++++|++++++.+.++ .+..||.++|+|+++||| +++.++ .+++++|+|+|+|||+|+++||++
T Consensus 384 ~~~~i~~~~P~~~~~v~~~~~---------~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ 453 (527)
T TIGR00503 384 KFTGIPNFAPELFRRIRLKDP---------LKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKE 453 (527)
T ss_pred eecCCCCCCcceEEEEEECCh---------hhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 778899999999999999874 688999999999999997 999988 777899999999999999999987
Q ss_pred c-CcEEEEeCCeEEEEe
Q 006610 437 E-GFELSVSPPKVMYKT 452 (639)
Q Consensus 437 e-g~ev~vs~P~V~yrE 452 (639)
+ |+++.+.+|+|+.--
T Consensus 454 ey~v~v~~~~~~v~~~r 470 (527)
T TIGR00503 454 EYNVEARYEPVNVATAR 470 (527)
T ss_pred HhCCeEEEeCCCceEEE
Confidence 5 999999999998743
No 22
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-60 Score=490.32 Aligned_cols=469 Identities=27% Similarity=0.374 Sum_probs=378.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCC----CCCccccccccccccccceeEeeeeEEEeec---------------
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHERAMDSISLERERGITIASKVTGISWR--------------- 117 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--------------- 117 (639)
..++||+.+|+|+|||||||.+.|...+|. .....+++|+...|++|||||.+...++.+.
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 457999999999999999999999999985 3456799999999999999999999887653
Q ss_pred -CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC----CCHHHHH
Q 006610 118 -ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSEERCD 192 (639)
Q Consensus 118 -~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~~~~~ 192 (639)
++.|||||.|||.||..|+-.+|+..||+|+|||+.+|+..||+.++++|....+.+++|+||+||.- ...+++.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999832 2232222
Q ss_pred HHHHHHHHH----HHhcCC---CCccc---cccEEecccccCCCCCc---------------------------------
Q 006610 193 EVESLVFDL----FANLGA---TDEQL---DFPVLYASAKEGWASST--------------------------------- 229 (639)
Q Consensus 193 ~v~~~i~~l----~~~~g~---~~~~~---~~Pvi~~SA~~g~~~~~--------------------------------- 229 (639)
+....+.+- +..++. .+.++ .-.+-++|+++||+...
T Consensus 176 qtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktk 255 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTK 255 (842)
T ss_pred HHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCC
Confidence 222222111 111111 01111 01277999999996421
Q ss_pred -ccCC-------Cc--------------------------------------------ccc------------cchHHHH
Q 006610 230 -FTKD-------PP--------------------------------------------ADV------------RNMSQLL 245 (639)
Q Consensus 230 -~~~~-------~~--------------------------------------------~~~------------~gl~~Ll 245 (639)
|... +. .++ ..-+.||
T Consensus 256 k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 256 KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 0000 00 000 1126788
Q ss_pred HHHHhhCCCCC-------------------------CCCCCCceeEEEeeeeecccce-EEEEEEEeeeeecCCEEEEee
Q 006610 246 DAIIRHVPPPK-------------------------ASLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLR 299 (639)
Q Consensus 246 d~I~~~lP~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-i~~grV~sG~l~~gd~v~~~~ 299 (639)
++|.-++|+|. +|+++|+.|+|+|+......|| +++||||||++..|+.+++..
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 99999999993 4789999999999998888888 699999999999999999987
Q ss_pred ccCC-CCc-eeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC-CcCCeeeecCCCcCCCCccCC-CCeeeeeeee
Q 006610 300 ITDS-GTE-KIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVTTALPTIELD-PPTISMTFGV 375 (639)
Q Consensus 300 ~~~~-~~~-~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~~~l~~~~~~-~P~~~~~~~~ 375 (639)
.++. |.+ ......|.+...++|...++++...||+|+++.|+++. ..+-||+..+....+..++|. .|++.+++++
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAVe~ 495 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAVEA 495 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEEEEEec
Confidence 6532 210 00011233344678999999999999999999999873 346788887766555555554 5899999998
Q ss_pred cCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCCCceEEEEecChhHHHHHHHHHHHc--CcEEEEeCCeEEEEe-
Q 006610 376 NDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE--GFELSVSPPKVMYKT- 452 (639)
Q Consensus 376 ~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~g~GelhL~vl~e~Lrre--g~ev~vs~P~V~yrE- 452 (639)
++. .|..||.+.|+|+++.||.+.+..+++++++|.|.|||||+|++.+|+.. ++.+..|+|-|.|||
T Consensus 496 Knp---------~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEt 566 (842)
T KOG0469|consen 496 KNP---------ADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRET 566 (842)
T ss_pred CCh---------hhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecc
Confidence 763 57899999999999999999999888888999999999999999999864 999999999999999
Q ss_pred ecC-----------------------------------------------------------------------------
Q 006610 453 ENG----------------------------------------------------------------------------- 455 (639)
Q Consensus 453 ~~g----------------------------------------------------------------------------- 455 (639)
+..
T Consensus 567 vs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll 646 (842)
T KOG0469|consen 567 VSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLL 646 (842)
T ss_pred cccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEE
Confidence 210
Q ss_pred ----------------------------------------------------------------------------ceee
Q 006610 456 ----------------------------------------------------------------------------VKLE 459 (639)
Q Consensus 456 ----------------------------------------------------------------------------~~~E 459 (639)
+++|
T Consensus 647 ~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~E 726 (842)
T KOG0469|consen 647 VDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQE 726 (842)
T ss_pred EecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecC
Confidence 2789
Q ss_pred eeeeEEEEE----cchHHHHhhccceEEeeeeccc---C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceee
Q 006610 460 PIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (639)
Q Consensus 460 P~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (639)
|++.|+|.| +|.|++-|++|||.+ .+.+ | ..+.+++.+|..|.+||..+||+.|+|++.-++.|+||+.
T Consensus 727 PvylvEIq~pe~avGgiy~vLn~kRG~v---~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~ 803 (842)
T KOG0469|consen 727 PVYLVEIQCPEQAVGGIYGVLNRKRGHV---FEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSI 803 (842)
T ss_pred ceEEEEEeCchhhhchhhheeeccccce---ecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeecccc
Confidence 999999999 999999999999999 7666 5 6899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006610 532 HRGLLG 537 (639)
Q Consensus 532 ~~g~~~ 537 (639)
.||+..
T Consensus 804 lpgdp~ 809 (842)
T KOG0469|consen 804 LPGDPL 809 (842)
T ss_pred CCCCCC
Confidence 999873
No 23
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-50 Score=430.27 Aligned_cols=469 Identities=24% Similarity=0.325 Sum_probs=372.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC-----CccccccccccccccceeEeeeeEEEee-----cCceEEEEe
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-----PHERAMDSISLERERGITIASKVTGISW-----RENELNMVD 125 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-----~~~~v~D~~~~e~ergiTi~~~~~~~~~-----~~~~i~iID 125 (639)
+++++|||+++||-+||||+|++.|..+++.+. ..-++.|....|++||++|.+...++-. +.+.+||+|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 456799999999999999999999999988432 2347889999999999999998887755 457899999
Q ss_pred CCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC----CH----HHHHHHHHH
Q 006610 126 TPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV----SE----ERCDEVESL 197 (639)
Q Consensus 126 TPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~----~~----~~~~~v~~~ 197 (639)
||||.+|..|+.++++++|++++|||+.+|++-+|+++++.+-+.++|+++|+||+||... .+ .++..+.++
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~ 283 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDE 283 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998431 11 233445566
Q ss_pred HHHHHHhcCCCCcccc----ccEEecccccCCCCCc-----------------------c------------cCCCc---
Q 006610 198 VFDLFANLGATDEQLD----FPVLYASAKEGWASST-----------------------F------------TKDPP--- 235 (639)
Q Consensus 198 i~~l~~~~g~~~~~~~----~Pvi~~SA~~g~~~~~-----------------------~------------~~~~~--- 235 (639)
+.+++..+..++..+- --|++.|.+.|++... | .+.+.
T Consensus 284 iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~ 363 (971)
T KOG0468|consen 284 INNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGS 363 (971)
T ss_pred hcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCc
Confidence 6666655544332221 2378888888864210 1 00000
Q ss_pred ------------------------------------------ccccchH---------------HHHHHHHhhCCCCC--
Q 006610 236 ------------------------------------------ADVRNMS---------------QLLDAIIRHVPPPK-- 256 (639)
Q Consensus 236 ------------------------------------------~~~~gl~---------------~Lld~I~~~lP~p~-- 256 (639)
....++. -+.|++.+++|+|.
T Consensus 364 ~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~ 443 (971)
T KOG0468|consen 364 GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPREN 443 (971)
T ss_pred ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhh
Confidence 0001222 34567778888884
Q ss_pred -----------------------CCCCCCceeEEEeeeeec-ccceEEEEEEEeeeeecCCEEEEeeccCCCC--ceeEE
Q 006610 257 -----------------------ASLDAPFQMLVTMMEKDF-YLGRILTGRVSSGVVSVGDKVHGLRITDSGT--EKIEE 310 (639)
Q Consensus 257 -----------------------~~~~~p~~~~V~~~~~d~-~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~--~~~~~ 310 (639)
+++++|+.+.++|++... ..-..++|||+||+++.|+.|.+...+.+.. +....
T Consensus 444 a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~ 523 (971)
T KOG0468|consen 444 AARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVI 523 (971)
T ss_pred hccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCccccee
Confidence 256799999999988644 3445699999999999999999987653321 13345
Q ss_pred eEEEEEEeeeCCceeeeccCCCCceEEecCCCC-CCcCCeeeecCCCc---CCCCcc-CCCCeeeeeeeecCCCCCCCCC
Q 006610 311 GKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK-PSIGHTVANTEVTT---ALPTIE-LDPPTISMTFGVNDSPLAGRDG 385 (639)
Q Consensus 311 ~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdtl~~~~~~~---~l~~~~-~~~P~~~~~~~~~~~p~~~~~~ 385 (639)
..|..|+.+.+..+.+|..|.||.+|.|.|++. +....|+++.+... .++++. ...|++..+++|-+ +
T Consensus 524 ~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~n----P--- 596 (971)
T KOG0468|consen 524 CEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLN----P--- 596 (971)
T ss_pred eeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccCC----h---
Confidence 679999999999999999999999999999986 33467887765432 344443 55778877777644 2
Q ss_pred cccchhhHHhHhhhhhccCceEEEEeCCCceEEEEecChhHHHHHHHHHHH-c-CcEEEEeCCeEEEEe--ec-------
Q 006610 386 THLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRR-E-GFELSVSPPKVMYKT--EN------- 454 (639)
Q Consensus 386 ~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~g~GelhL~vl~e~Lrr-e-g~ev~vs~P~V~yrE--~~------- 454 (639)
.+..|+.++|.|....-|.+...-.+++|+.|.|-|||.|++++.+||. + .+|++|+.|-|.|.| ++
T Consensus 597 --sELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcf 674 (971)
T KOG0468|consen 597 --SELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCF 674 (971)
T ss_pred --hhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhh
Confidence 3458999999999999987765555788899999999999999999997 3 899999999999998 22
Q ss_pred ------C-------------------------------------------------------------------------
Q 006610 455 ------G------------------------------------------------------------------------- 455 (639)
Q Consensus 455 ------g------------------------------------------------------------------------- 455 (639)
+
T Consensus 675 aetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evd 754 (971)
T KOG0468|consen 675 AETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVD 754 (971)
T ss_pred ccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhh
Confidence 0
Q ss_pred ----------------------------------------------------------------------ceeeeeeeEE
Q 006610 456 ----------------------------------------------------------------------VKLEPIEEVT 465 (639)
Q Consensus 456 ----------------------------------------------------------------------~~~EP~~~~~ 465 (639)
+++||++.|+
T Consensus 755 k~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VE 834 (971)
T KOG0468|consen 755 KNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVE 834 (971)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEE
Confidence 2789999999
Q ss_pred EEE----cchHHHHhhccceEEeeeeccc---C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 466 IEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 466 i~v----~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
|.+ ...|.+.|++|||++ ..-. | -...+++.+|.-+.+||.++||..|+|+|.+.+.|+||+++||+.
T Consensus 835 i~apad~v~~Vy~vl~rRRGhV---~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDp 910 (971)
T KOG0468|consen 835 ITAPADCVPAVYTVLSRRRGHV---TQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDP 910 (971)
T ss_pred EecccchHHHHHHHHHhhcCce---eecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCCCCc
Confidence 988 888999999999999 6544 4 578899999999999999999999999999999999999999986
No 24
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-50 Score=415.69 Aligned_cols=356 Identities=26% Similarity=0.365 Sum_probs=298.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCC----------CCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD----------IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG 128 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----------~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG 128 (639)
+-|++|||.|+|+|||||.++||...|+. ....+.+|++..|++|||++.++...|+|+++.+||+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 56899999999999999999999887742 22357889999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh----
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN---- 204 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~---- 204 (639)
|.||...++|.|..+|.||+||||..|+.+||+++++.|+.+++|++-||||+||+..+| .++++++.+.+.-
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP---~ELLdEiE~~L~i~~~P 167 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDP---LELLDEIEEELGIQCAP 167 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCCh---HHHHHHHHHHhCcceec
Confidence 999999999999999999999999999999999999999999999999999999999888 3344444332210
Q ss_pred ----cC-----------------------------------CCCcc----------------------------------
Q 006610 205 ----LG-----------------------------------ATDEQ---------------------------------- 211 (639)
Q Consensus 205 ----~g-----------------------------------~~~~~---------------------------------- 211 (639)
+| .....
T Consensus 168 itWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~ 247 (528)
T COG4108 168 ITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLA 247 (528)
T ss_pred ccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhc
Confidence 00 00000
Q ss_pred -ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC---------CCCCCceeEEEeeee--e-cccce
Q 006610 212 -LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA---------SLDAPFQMLVTMMEK--D-FYLGR 278 (639)
Q Consensus 212 -~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~---------~~~~p~~~~V~~~~~--d-~~~G~ 278 (639)
.-.||+++||..++ |++.+|++++++.|+|.. ..+..|..+|||+.. | ++..|
T Consensus 248 G~~TPVFFGSAl~NF--------------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDR 313 (528)
T COG4108 248 GELTPVFFGSALGNF--------------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDR 313 (528)
T ss_pred CCccceEehhhhhcc--------------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccc
Confidence 01699999999999 999999999999999963 124569999999853 3 36789
Q ss_pred EEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcC
Q 006610 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA 358 (639)
Q Consensus 279 i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~ 358 (639)
|++.||.||++..|+.+...+++ +..+++.-..+.+..|+.+++|.|||||+|..-..+++|||++..+ ...
T Consensus 314 IAFmRv~SGkferGMkv~h~rtG-------K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~Ge-~l~ 385 (528)
T COG4108 314 IAFMRVCSGKFERGMKVTHVRTG-------KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGE-KLK 385 (528)
T ss_pred eeEEEeccccccCCceeeeeecC-------CceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecCc-eee
Confidence 99999999999999999988763 5678888888899999999999999999997766799999999874 456
Q ss_pred CCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEe-CCCceEEEEecChhHHHHHHHHHHHc
Q 006610 359 LPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIP-GMAETYEVQGRGELQLGILIENMRRE 437 (639)
Q Consensus 359 l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~-~~~~~~~v~g~GelhL~vl~e~Lrre 437 (639)
+++++...|-+.+.+..++. +...++..+|.++++|-+ +++-. ..+...+|...|.||++|+.+||+.|
T Consensus 386 f~giP~FaPE~frrvr~kd~---------~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~E 455 (528)
T COG4108 386 FTGIPNFAPELFRRVRLKDP---------LKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNE 455 (528)
T ss_pred ecCCCCCCHHHHHHHhcCCh---------HHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhh
Confidence 77777777888888887762 456789999999999986 55544 45566899999999999999999987
Q ss_pred -CcEEEEeCCeEE
Q 006610 438 -GFELSVSPPKVM 449 (639)
Q Consensus 438 -g~ev~vs~P~V~ 449 (639)
|+|+...+-.+.
T Consensus 456 Y~ve~~~e~~~~~ 468 (528)
T COG4108 456 YNVEAVFEPVNFS 468 (528)
T ss_pred hCCeEEEeeccce
Confidence 999988765443
No 25
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-47 Score=411.89 Aligned_cols=468 Identities=25% Similarity=0.324 Sum_probs=362.0
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~ 130 (639)
.+.+.+|||++++|+|||||||++.|+...|... ..-++||+.+.|+.||||..++..+...+++.+||||+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3456899999999999999999999999988533 345899999999999999999999988899999999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC----CCHHH----HHHHHHHHHHHH
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSEER----CDEVESLVFDLF 202 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~~~----~~~v~~~i~~l~ 202 (639)
||.+++..+.+.+|+++++||+.+|+..||..+++++-..++.+|+|+|||||.. ..+.+ +..+.+++..++
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i 163 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVI 163 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999642 33322 222334443332
Q ss_pred Hhc-----------------CCCCccccccEEecccccCCCCCc----------------------cc-----CC-----
Q 006610 203 ANL-----------------GATDEQLDFPVLYASAKEGWASST----------------------FT-----KD----- 233 (639)
Q Consensus 203 ~~~-----------------g~~~~~~~~Pvi~~SA~~g~~~~~----------------------~~-----~~----- 233 (639)
..+ +.....-+--|+++||..||++.. |. ++
T Consensus 164 ~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~ 243 (887)
T KOG0467|consen 164 GQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRIC 243 (887)
T ss_pred HHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhh
Confidence 210 000001122489999999996431 00 00
Q ss_pred ----Cccc---------------------c-------------------cchHHHHHHHH---------------hhCCC
Q 006610 234 ----PPAD---------------------V-------------------RNMSQLLDAII---------------RHVPP 254 (639)
Q Consensus 234 ----~~~~---------------------~-------------------~gl~~Lld~I~---------------~~lP~ 254 (639)
.... . ..++.++++++ .++|.
T Consensus 244 ~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~ 323 (887)
T KOG0467|consen 244 EGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPD 323 (887)
T ss_pred cccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCC
Confidence 0000 0 01123333333 34444
Q ss_pred CC----------------------------CCCCCCceeEEEeeeeecc----cc-eEEEEEEEeeeeecCCEEEEeecc
Q 006610 255 PK----------------------------ASLDAPFQMLVTMMEKDFY----LG-RILTGRVSSGVVSVGDKVHGLRIT 301 (639)
Q Consensus 255 p~----------------------------~~~~~p~~~~V~~~~~d~~----~G-~i~~grV~sG~l~~gd~v~~~~~~ 301 (639)
|. ++.++|..++|.|....+- .- -++++|||||+++.||.++..+.+
T Consensus 324 pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~pd 403 (887)
T KOG0467|consen 324 PIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGPD 403 (887)
T ss_pred HHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCCC
Confidence 41 2346788888888765432 22 479999999999999999998652
Q ss_pred CCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcC-CCCccCCCCeeeeeeeecCCCC
Q 006610 302 DSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA-LPTIELDPPTISMTFGVNDSPL 380 (639)
Q Consensus 302 ~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~-l~~~~~~~P~~~~~~~~~~~p~ 380 (639)
....+.....+|.++|.+.|.+.++.+++.+|++++|.|-+.+....|+|+.....+ +....--.|.+.+++.+.+ |
T Consensus 404 ~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~-p- 481 (887)
T KOG0467|consen 404 PLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDD-P- 481 (887)
T ss_pred CCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCC-h-
Confidence 111113567899999999999999999999999999998333445678888733222 2211223688888888754 2
Q ss_pred CCCCCcccchhhHHhHhhhhhccCceEEEEeCCCceEEEEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-e-cC--
Q 006610 381 AGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E-NG-- 455 (639)
Q Consensus 381 ~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~-~g-- 455 (639)
.+.++|.+.|+-+...||++++..+..+++.+...||+||+-++.+|+.+ ++++++++|.|+||| + ..
T Consensus 482 -------~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e~s~ 554 (887)
T KOG0467|consen 482 -------DEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIEDSD 554 (887)
T ss_pred -------HHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhccccch
Confidence 46689999999999999999988777778999999999999999999985 999999999999999 4 10
Q ss_pred --------------------------------------------------------------------------------
Q 006610 456 -------------------------------------------------------------------------------- 455 (639)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (639)
T Consensus 555 l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~~~ 634 (887)
T KOG0467|consen 555 LLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLYEF 634 (887)
T ss_pred hhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHHhhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006610 456 -------------------------------------------------------------------------------- 455 (639)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (639)
T Consensus 635 ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es~ 714 (887)
T KOG0467|consen 635 EKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVLESG 714 (887)
T ss_pred cccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEeecc
Confidence
Q ss_pred --------------------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc---C-CEEE
Q 006610 456 --------------------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWK 495 (639)
Q Consensus 456 --------------------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~ 495 (639)
+++.||+.+.|.+ .|.|+.-|++|+|++ +.-+ | +.+.
T Consensus 715 ~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkV---LsEem~EgT~~F~ 791 (887)
T KOG0467|consen 715 SAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKV---LSEEMKEGTGFFI 791 (887)
T ss_pred CcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchh---hhhhhhCCCCcEE
Confidence 1445577888888 999999999999999 7544 5 8999
Q ss_pred EEEEeccccccchhhhccccceeceEeeeeccceeeccC
Q 006610 496 LSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRG 534 (639)
Q Consensus 496 i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g 534 (639)
+++.+|..|.+||+.++|--|+|.+...+.|+||+-..-
T Consensus 792 V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~ 830 (887)
T KOG0467|consen 792 VTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDE 830 (887)
T ss_pred EEEEeeeeccccHHHHHhhccccccchhhhccccEEecC
Confidence 999999999999999999999999999999999997644
No 26
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-41 Score=348.77 Aligned_cols=285 Identities=28% Similarity=0.371 Sum_probs=249.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------------------CccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+...|++++||+|||||||+.+|+++.|... .-.++||+.++||+||+|++.....|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 3467999999999999999999999998421 125899999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (639)
+.++|+|||||.||..++....++||.+||||||..+ +..||++++-.++.+|+. +||++||||...++.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999998 899999999999999998 57889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEee
Q 006610 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMM 270 (639)
Q Consensus 191 ~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~ 270 (639)
++++.+++..+++.+|+... +++++++||.+|.+...... ...|..-..||++|- .+..|....++||++.|.++
T Consensus 165 f~ei~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v 239 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCc--CCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeE
Confidence 99999999998889998765 58999999999997665542 223334456666664 77778777899999999999
Q ss_pred eeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCc
Q 006610 271 EKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSI 346 (639)
Q Consensus 271 ~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~ 346 (639)
+.....|.+.+|||.+|.|++||.|++.+.+ ....|+++... .++++.|.|||.|.+ .|+ +|++.
T Consensus 240 ~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~-------~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~ 308 (428)
T COG5256 240 YSISGIGTVPVGRVESGVIKPGQKVTFMPAG-------VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRR 308 (428)
T ss_pred EEecCCceEEEEEEeeeeeccCCEEEEecCc-------ceEEEeeeeec----ccccccCCCCCeEEEEecCCchhccCC
Confidence 9988999999999999999999999999763 45678888765 468999999999865 565 46999
Q ss_pred CCeeeecCCCcC
Q 006610 347 GHTVANTEVTTA 358 (639)
Q Consensus 347 Gdtl~~~~~~~~ 358 (639)
||.+++.+++..
T Consensus 309 Gdv~~~~~n~~t 320 (428)
T COG5256 309 GDVIGHSDNPPT 320 (428)
T ss_pred ccEeccCCCCcc
Confidence 999999887644
No 27
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.2e-39 Score=355.21 Aligned_cols=286 Identities=30% Similarity=0.383 Sum_probs=239.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+..+||+++||+|||||||+++|++..+... .....+|+.+.|++||+|+++....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 4578999999999999999999999876432 123478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.+++..+|++++||||.+|++.||++++..+...++| +|+|+||+|+... .+..+.+.+++.+++..+++..+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~-~~~~~~~~~~l~~~l~~~~~~~~-- 166 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD-EELLELVELEVRELLSKYDFPGD-- 166 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH-HHHHHHHHHHHHHHHHHhCCCCC--
Confidence 9999999999999999999999999999999999999999 5689999999642 23445566788888888776543
Q ss_pred cccEEecccccCCCCCcccCCC----cccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeee
Q 006610 213 DFPVLYASAKEGWASSTFTKDP----PADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~----~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~ 288 (639)
.+|++++||++|++........ ..+..++..|+++|.+++|+|..+.++||+++|++++++++.|++++|||++|+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~ 246 (409)
T CHL00071 167 DIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGT 246 (409)
T ss_pred cceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCE
Confidence 4799999999998544222110 011226789999999999989888899999999999999999999999999999
Q ss_pred eecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeeeecCC
Q 006610 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTEV 355 (639)
Q Consensus 289 l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~~~ 355 (639)
+++||.|.+.+... ....+|++|+.+. .++++|.|||+|++ .+++ +++.||+||+++.
T Consensus 247 l~~Gd~v~i~p~~~-----~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~ 308 (409)
T CHL00071 247 VKVGDTVEIVGLRE-----TKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGT 308 (409)
T ss_pred EeeCCEEEEeeCCC-----CcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCC
Confidence 99999998875321 1457899998754 47899999999966 4664 6899999998763
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=7.1e-40 Score=358.82 Aligned_cols=281 Identities=25% Similarity=0.307 Sum_probs=237.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+..+||+++||+|||||||+++|++.+|.... ..+++|..++|++||+|++.....++|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 34689999999999999999999998874211 13689999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCCc-EEEEcCCCCC--CCCH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLRP-ILLLNKVDRP--AVSE 188 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~lp~-IvviNKiD~~--~~~~ 188 (639)
+.++|+|||||.||..++..+++.+|++||||||.+|.. .||+++|..+..+++|. |+|+||||+. .++.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999999843 79999999999999975 7789999986 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (639)
.++.++.+++.+++...|+..+ .+|++++||++|.+..+.... ..|..-..|+++|. .++.|....+.||++.|.
T Consensus 165 ~~~~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~~~~~--~~Wy~g~tLl~~l~-~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 165 ARYDEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALD-QINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccccccC--CcccchHHHHHHHh-hcCCCccccCCCcEEEEE
Confidence 6788899999999998887643 368999999999865432211 12222346787774 477787788999999999
Q ss_pred eeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCC
Q 006610 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKP 344 (639)
Q Consensus 269 ~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~ 344 (639)
+++..++.|+++.|||.+|+|++||.|.+.+.+ ...+|++|..+ ..++++|.|||.|++ .++ .++
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~-------~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~~~~~~i 308 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG-------LTTEVKSVEMH----HESLQEALPGDNVGFNVKNVAVKDL 308 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC-------CEEEEEEEEEC----CeEeCEecCCCeEEEEECCCCHhhC
Confidence 999999999999999999999999999998753 45789999865 368999999999877 466 468
Q ss_pred CcCCeeeecC
Q 006610 345 SIGHTVANTE 354 (639)
Q Consensus 345 ~~Gdtl~~~~ 354 (639)
..|++||+..
T Consensus 309 ~rG~vl~~~~ 318 (447)
T PLN00043 309 KRGYVASNSK 318 (447)
T ss_pred CCccEEccCC
Confidence 8999999864
No 29
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=6.1e-40 Score=359.59 Aligned_cols=281 Identities=26% Similarity=0.352 Sum_probs=237.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+...||+++||+|||||||+++|++.+|.... ..+++|+.++|++||+|++.....++|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34689999999999999999999998874221 12579999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCCc-EEEEcCCCCC--CCCH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLRP-ILLLNKVDRP--AVSE 188 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~lp~-IvviNKiD~~--~~~~ 188 (639)
+.++|||||||.+|..++.++++.+|++||||||.+|++ +||+++|..+..+|+|. |||+||||++ .++.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 999999999999999999999999999999999999984 89999999999999995 6899999954 4567
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (639)
.+++++.+++.+++..+++..+ ++|++++||.+|.+..+.... ..|..-..|+++| +.++.|..+.++||++.|.
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~--~~~~ipiSa~~g~ni~~~~~~--~~Wy~G~tL~~~l-~~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPE--KVPFIPISGWQGDNMIEKSDN--MPWYKGPTLLEAL-DTLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcc--cceEEEeecccCCCcccCCCC--CcccchHHHHHHH-hCCCCCCcCCCCCeEEEEE
Confidence 8889999999999988887543 489999999999865432221 1222235688886 4456677777899999999
Q ss_pred eeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CC
Q 006610 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KP 344 (639)
Q Consensus 269 ~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~ 344 (639)
+++..++.|+++.|+|.+|+|++||.|.+.+.+ ...+|++|..++ .++++|.|||.|++ .+++ ++
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~L~~i~~~~v 308 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG-------VTTEVKSVEMHH----EQLAEAVPGDNVGFNVKNVSVKDI 308 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCC-------cEEEEEEEEecC----cccCEECCCCEEEEEECCCCHHHc
Confidence 999999999999999999999999999999753 457899998763 58999999999887 4543 58
Q ss_pred CcCCeeeecC
Q 006610 345 SIGHTVANTE 354 (639)
Q Consensus 345 ~~Gdtl~~~~ 354 (639)
..||+||+++
T Consensus 309 ~rG~vl~~~~ 318 (446)
T PTZ00141 309 KRGYVASDSK 318 (446)
T ss_pred CCceEEecCC
Confidence 8999999864
No 30
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.3e-39 Score=353.10 Aligned_cols=279 Identities=32% Similarity=0.423 Sum_probs=234.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+..+||+++||+|||||||+++|++..+... ...+.+|..+.|++||+|++.....+.+++++++|||||||.+|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 4578999999999999999999997543211 112468999999999999999988888889999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.++++.+|++++|||+.+|+++||++++..+...++| +|+|+||+|+.. +.+..+.+.+++.+++...++...
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~-- 166 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD-DEELLELVEMEVRELLSEYDFPGD-- 166 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHhCCCcC--
Confidence 9999999999999999999999999999999999999999 568899999853 223334456688888887776433
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
.+|++++||++|..... ....++..|++++.+++|.|..+.++||+++|++++++++.|.+++|||.+|+|++|
T Consensus 167 ~~~ii~vSa~~g~~~~~------~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T PRK12736 167 DIPVIRGSALKALEGDP------KWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVG 240 (394)
T ss_pred CccEEEeeccccccCCC------cchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecC
Confidence 37899999999842110 111378999999999999998888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeeeecC
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTE 354 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~~ 354 (639)
|.|++.+... ....+|++|+.+ +.++++|.|||++++ .|++ ++..||+||+++
T Consensus 241 d~v~i~p~~~-----~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 241 DEVEIVGIKE-----TQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred CEEEEecCCC-----CeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9999986521 256789999875 468999999999966 7774 689999999976
No 31
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.4e-39 Score=352.60 Aligned_cols=286 Identities=29% Similarity=0.378 Sum_probs=238.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+..+||+++||+|||||||+++|++..+... .....+|..+.|++||+|++.....+.+++++++|||||||.+|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 4578999999999999999999998776421 123578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.++.++++.+|++++||||.+|+++||+++|..+..+++| +|+++||+|+.. ..+..+.+.+++.+++..+++...
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~~~~~~~i~~~i~~~l~~~g~~~~-- 235 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLELVELEVRELLSSYEFPGD-- 235 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC-HHHHHHHHHHHHHHHHHhcCCCcC--
Confidence 9999999999999999999999999999999999999999 568999999964 233455666788888888877542
Q ss_pred cccEEecccccCCCCCccc---CCCcccc-cchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeee
Q 006610 213 DFPVLYASAKEGWASSTFT---KDPPADV-RNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~---~~~~~~~-~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~ 288 (639)
++|++++||.+|++..... ......| .++..|+++|.++.|.|..+.++||+++|.++++.++.|.++.|+|.+|+
T Consensus 236 ~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~ 315 (478)
T PLN03126 236 DIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 315 (478)
T ss_pred cceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCe
Confidence 5899999999997432100 0000111 24788999999888878777889999999999999999999999999999
Q ss_pred eecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeeeecCC
Q 006610 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTEV 355 (639)
Q Consensus 289 l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~~~ 355 (639)
|++||.|.+.+.+ .....+|++|+.++ .++++|.|||.|++ .+++ +++.|++||+++.
T Consensus 316 i~~Gd~v~i~p~~-----~~~~~~VksI~~~~----~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 316 VKVGETVDIVGLR-----ETRSTTVTGVEMFQ----KILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGS 377 (478)
T ss_pred EecCCEEEEecCC-----CceEEEEEEEEECC----eECCEEeCCceeeeeccCCcHHHcCCccEEecCCC
Confidence 9999999998652 12467899998763 68999999999887 5664 5889999999753
No 32
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.2e-38 Score=345.79 Aligned_cols=281 Identities=31% Similarity=0.409 Sum_probs=236.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC----ccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~----~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+...||+++||+|||||||+++|++....... ..+.+|..+.|++||+|++.....+.+++.+++|||||||.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 45789999999999999999999985432111 12478999999999999999999998889999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.+++..+|++++|+|+.+|+..||++++..+...++|.| +|+||+|+.. +.+..+.+.+++.+++..+++...
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~-~~~~~~~~~~ei~~~l~~~~~~~~-- 166 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGD-- 166 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHcCCCcC--
Confidence 999999999999999999999999999999999999999976 5799999954 333445556678888877765432
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
++|++++||++|++... ...+..++..|+++|.+.+|.|..+.++||+++|.++++.++.|.+++|+|.+|+|++|
T Consensus 167 ~~~ii~~Sa~~g~n~~~----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~g 242 (396)
T PRK12735 167 DTPIIRGSALKALEGDD----DEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 242 (396)
T ss_pred ceeEEecchhccccCCC----CCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCC
Confidence 47899999999975321 11222478999999999999888888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecC
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTE 354 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~ 354 (639)
|.|++.+.+ .....+|++|+.+ .+++++|.|||++++ .|+ ++++.|++||+++
T Consensus 243 d~v~i~p~~-----~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 243 DEVEIVGIK-----ETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred CEEEEecCC-----CCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 999998742 1256789998865 368999999999887 677 4689999999975
No 33
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1e-38 Score=346.50 Aligned_cols=279 Identities=29% Similarity=0.390 Sum_probs=232.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCC---C-CCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA---D-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~---~-~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
++.+||+++||+|||||||+++|++.... . ....+.+|..+.|++||+|++.....+.+++.+++|||||||.+|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 45789999999999999999999865321 1 1123579999999999999999998888888999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.+++..+|++++|||+.+|+..||++++..+...++|.+ +|+||+|+... .+..+.+.+++.+++..+++...
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~-~~~~~~~~~~i~~~l~~~~~~~~-- 166 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD-EELLELVEMEVRELLSEYDFPGD-- 166 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH-HHHHHHHHHHHHHHHHhcCCCcc--
Confidence 999999999999999999999999999999999999999976 68999998542 23344456678888877765432
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
.+|++++||++|.... ..+..++..|+++|.+.+|.|..+.++||+++|++++++++.|.+++|||.+|+|++|
T Consensus 167 ~~~ii~vSa~~g~~g~------~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T TIGR00485 167 DTPIIRGSALKALEGD------AEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVG 240 (394)
T ss_pred CccEEECccccccccC------CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCC
Confidence 4799999999885221 1112367899999998889888888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecC
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTE 354 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~ 354 (639)
|.|.+.+.. .....+|++|+.+ +.++++|.|||+|++ .|+ ++++.||+||+++
T Consensus 241 d~v~i~p~~-----~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 241 EEVEIVGLK-----DTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred CEEEEecCC-----CCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 999988642 1145789999875 368899999999976 676 4689999999974
No 34
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-38 Score=344.92 Aligned_cols=281 Identities=30% Similarity=0.425 Sum_probs=236.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCC----CCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD----IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+..+||+++||+|||||||+++|++..... ....+.+|+.+.|++||+|++.....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 457899999999999999999999853311 1122478999999999999999998988889999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.+++..+|++++|||+.+|+++||++++..+...++|.+ +++||+|+.. +.+.++.+.+++.+++..+++...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~-~~~~~~~~~~~i~~~l~~~~~~~~-- 166 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGD-- 166 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc-hHHHHHHHHHHHHHHHHhcCCCcc--
Confidence 999999999999999999999999999999999999999986 6899999964 333445566788888888776432
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
.+|++++||++|++... ...+..++..|+++|.+.+|.|....++||++.|..+++.++.|.++.|+|.+|++++|
T Consensus 167 ~~~iv~iSa~~g~~~~~----~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~g 242 (396)
T PRK00049 167 DTPIIRGSALKALEGDD----DEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVG 242 (396)
T ss_pred CCcEEEeecccccCCCC----cccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecC
Confidence 47899999999874211 11122378999999999999888888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecC
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTE 354 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~ 354 (639)
|.|.+.+... ....+|++|..++ .++++|.|||.|++ .|+ +++..|++||+++
T Consensus 243 d~v~i~p~~~-----~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 243 EEVEIVGIRD-----TQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred CEEEEeecCC-----CceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 9999986521 2567899998753 68999999999887 676 4688999999975
No 35
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.9e-38 Score=344.82 Aligned_cols=287 Identities=29% Similarity=0.394 Sum_probs=233.1
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHHHHc---CCC-CCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQC---GAD-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~---g~~-~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
....+..+||+++||+|||||||+++|++.. |.. ......+|..++|++||+|++.....+++++.+++|+|||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 3344567999999999999999999998542 211 111236899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.+|...+..++..+|+++||||+.+|++.||++++..+...++|. |+++||+|+.. +.+..+.+.+++.+++..+++.
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~-~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD-DEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC-HHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999995 68999999964 2233344555777777766664
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeee
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~ 288 (639)
.+ .+|++++||..+....+. ...+.++..|+++|.+++|.|..+.++||++.|.+++..++.|.++.|+|.+|+
T Consensus 214 ~~--~vpiip~Sa~sa~~g~n~----~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~ 287 (447)
T PLN03127 214 GD--EIPIIRGSALSALQGTND----EIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 287 (447)
T ss_pred CC--cceEEEeccceeecCCCc----ccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccE
Confidence 32 478999998755321110 011236899999999999999888889999999999999999999999999999
Q ss_pred eecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeeeecC
Q 006610 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTE 354 (639)
Q Consensus 289 l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~~ 354 (639)
|++||.|.+.+.+..+ ....+|++|..++ ..+++|.|||.|++ .|++ ++..|++||+++
T Consensus 288 i~~Gd~v~i~p~~~~g---~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 288 IKVGEEVEIVGLRPGG---PLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EecCCEEEEcccCCCC---cEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 9999999988653211 2567899998764 47899999999877 6764 688999999874
No 36
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.5e-38 Score=347.29 Aligned_cols=282 Identities=31% Similarity=0.409 Sum_probs=237.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+...||+++||+|||||||+++|++..|.... ..+++|+.++|++||+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45689999999999999999999998875321 14689999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCC--CCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE--GPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVE 195 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~--g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~ 195 (639)
++++|||||||.+|...+..+++.+|++|+|||+.+ ++..++++++..+...++| +++|+||+|+...+.+++.++.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999899999999999999999 9999999999999999975 7889999999776666667777
Q ss_pred HHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecc
Q 006610 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFY 275 (639)
Q Consensus 196 ~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~ 275 (639)
+++.+++...++... .+|++++||++|.+..+... ...|.....|+++| +.+|.|..+.++||++.|.+++..++
T Consensus 164 ~~i~~~l~~~g~~~~--~~~ii~iSA~~g~gi~~~~~--~~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g 238 (425)
T PRK12317 164 EEVSKLLKMVGYKPD--DIPFIPVSAFEGDNVVKKSE--NMPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISG 238 (425)
T ss_pred HHHHHHHHhhCCCcC--cceEEEeecccCCCcccccc--CCCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCC
Confidence 888888877776432 36899999999986554322 12233336688886 56788877788999999999999999
Q ss_pred cceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeee
Q 006610 276 LGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVA 351 (639)
Q Consensus 276 ~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~ 351 (639)
.|+++.|+|.+|+|++||.|.+.+.+ ...+|++|..+. .++++|.|||.|++ .+++ ++..||+||
T Consensus 239 ~G~vv~G~v~~G~v~~Gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 239 VGTVPVGRVETGVLKVGDKVVFMPAG-------VVGEVKSIEMHH----EELPQAEPGDNIGFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred CeEEEEEEEeeccEecCCEEEECCCC-------CeEEEEEEEECC----cccCEECCCCeEEEEECCCCHHHccCccEec
Confidence 99999999999999999999999753 457899998753 58999999999876 5654 588999999
Q ss_pred ecCC
Q 006610 352 NTEV 355 (639)
Q Consensus 352 ~~~~ 355 (639)
+++.
T Consensus 308 ~~~~ 311 (425)
T PRK12317 308 HPDN 311 (425)
T ss_pred CCCC
Confidence 8754
No 37
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.1e-37 Score=339.31 Aligned_cols=277 Identities=25% Similarity=0.312 Sum_probs=226.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCC---------------------ccccccccccccccceeEeeeeEEEeecCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------------HERAMDSISLERERGITIASKVTGISWREN 119 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~~ 119 (639)
.||+++||+|||||||+++||+.+|.... ..+++|+.++|++||+|++.....+.|+++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 37999999999999999999999885221 136899999999999999999999999999
Q ss_pred eEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHH
Q 006610 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLV 198 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i 198 (639)
+++|||||||.+|..++..++..+|++|+||||.+|+++||++++..+...++| +|+|+||+|+..++...++++.+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 5679999999876666667777777
Q ss_pred HHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccce
Q 006610 199 FDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGR 278 (639)
Q Consensus 199 ~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~ 278 (639)
.+++..+++. ++|++++||++|.+...... ...|.....|+++| +.++.|....++||++.|..++...+.++
T Consensus 161 ~~~~~~~~~~----~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~ 233 (406)
T TIGR02034 161 LAFAEQLGFR----DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFR 233 (406)
T ss_pred HHHHHHcCCC----CccEEEeecccCCCCccccc--CCCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcE
Confidence 7777766653 36899999999986553221 12233334566655 44677767778999999988765433233
Q ss_pred EEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--CCCCCCcCCeeeecCC
Q 006610 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GMTKPSIGHTVANTEV 355 (639)
Q Consensus 279 i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~Gdtl~~~~~ 355 (639)
-..|+|.+|+|++||.|.+.|.+ ...+|++|+.+. .++++|.|||.|++. +.+++..||+||+++.
T Consensus 234 g~~G~v~~G~l~~gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 234 GYAGTIASGSVHVGDEVVVLPSG-------RSSRVARIVTFD----GDLEQARAGQAVTLTLDDEIDISRGDLLAAADS 301 (406)
T ss_pred EEEEEEecceeecCCEEEEeCCC-------cEEEEEEEEECC----cccCEeCCCCEEEEEECCccccCCccEEEcCCC
Confidence 36799999999999999998753 467999998764 479999999999884 3456889999999865
No 38
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-38 Score=318.42 Aligned_cols=286 Identities=30% Similarity=0.416 Sum_probs=241.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc---C-CCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC---G-ADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~---g-~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ 134 (639)
...||+-|||+|||||||.-++.+-. | +......-.|..++|+.|||||......++...+.+--+|||||+||..
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 46899999999999999999987542 2 2223334458999999999999998888888889999999999999999
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+.......|++||||.|++|+++||++++-.|++-|++. +|++||.|..+ +++.++-+.-++++++..+|++.+ +
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d~e~leLVEmE~RElLse~gf~Gd--~ 209 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD-DPEMLELVEMEIRELLSEFGFDGD--N 209 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC-CHHHHHHHHHHHHHHHHHcCCCCC--C
Confidence 9999999999999999999999999999999999999995 57899999953 556666677799999999999776 4
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd 293 (639)
.||+.+||+...-.. .++.....+..|+|++-+|+|.|.++.+.||.+.|.+++..++.|++++||+.+|+||+|+
T Consensus 210 ~PvI~GSAL~ALeg~----~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~ 285 (449)
T KOG0460|consen 210 TPVIRGSALCALEGR----QPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGD 285 (449)
T ss_pred CCeeecchhhhhcCC----CccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCC
Confidence 899999988654221 1333344689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecCCCcCCC
Q 006610 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTEVTTALP 360 (639)
Q Consensus 294 ~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~~~~~l~ 360 (639)
.+.+...+ +..+..|+.|..|+ +.+++|.|||-+++ .|+ ++++.|.++|.++...+..
T Consensus 286 e~eivG~~-----~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~ 347 (449)
T KOG0460|consen 286 EVEIVGHN-----KTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHN 347 (449)
T ss_pred EEEEeccC-----cceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccc
Confidence 99998653 23566788887764 58999999999865 566 4799999999988754443
No 39
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.8e-37 Score=340.44 Aligned_cols=282 Identities=29% Similarity=0.393 Sum_probs=235.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+..+||+++||+|||||||+++|+...|.... ..+++|..+.|++||+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45789999999999999999999998774221 13679999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC---CchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG---PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEV 194 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g---~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v 194 (639)
+.++|||||||.+|...+..+++.+|++|||||+.++ ...++.+++..+...+++ +|+|+||+|+.+++.+.++++
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHH
Confidence 9999999999999999999999999999999999999 788998888888888865 678999999987677777778
Q ss_pred HHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeec
Q 006610 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDF 274 (639)
Q Consensus 195 ~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~ 274 (639)
.+++.+++...++... .+|++++||++|.+..+.... ..|.....|+++| +.+++|..+.++||++.|.++++.+
T Consensus 165 ~~ei~~~~~~~g~~~~--~~~~i~iSA~~g~ni~~~~~~--~~w~~g~~l~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 165 KKEVSNLIKKVGYNPD--TVPFIPISAWNGDNVIKKSEN--TPWYKGKTLLEAL-DALEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHHHHHHcCCCcc--cceEEEeeccccccccccccC--CccccchHHHHHH-hcCCCCCCccCCCcEEEEEEEEecC
Confidence 8888888887776432 368999999999865442221 1122234688888 4577777777899999999999999
Q ss_pred ccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCee
Q 006610 275 YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTV 350 (639)
Q Consensus 275 ~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl 350 (639)
+.|+++.|+|.+|+|+.||.|.+.+.+ ...+|++|..++ .++++|.|||+|++ .++ +++..|++|
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl 308 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAG-------VSGEVKSIEMHH----EQIEQAEPGDNIGFNVRGVSKKDIRRGDVC 308 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCC-------cEEEEEEEEECC----cccCEEcCCCEEEEEECCCChhhcccceEE
Confidence 999999999999999999999998753 457899998764 58899999999877 565 368899999
Q ss_pred eecCC
Q 006610 351 ANTEV 355 (639)
Q Consensus 351 ~~~~~ 355 (639)
++++.
T Consensus 309 ~~~~~ 313 (426)
T TIGR00483 309 GHPDN 313 (426)
T ss_pred ecCCC
Confidence 98754
No 40
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-38 Score=309.90 Aligned_cols=283 Identities=31% Similarity=0.423 Sum_probs=238.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC----CCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g----~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+..-||+.|||+|||||||..++..... +......-.|..++|++|||||......++..+..+-.+|||||+||.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 3468999999999999999999876532 222223345788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.....+.|++||||+|++|+++||++++..+++.|+|. ++|+||+|+.+ +++.++.+..++++|+..++++.+
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-d~ellelVemEvreLLs~y~f~gd-- 166 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD-DEELLELVEMEVRELLSEYGFPGD-- 166 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC-cHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 99999999999999999999999999999999999999985 57899999975 577778888999999999998754
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
+.|++..||+...... ..+...+.+|++++-+|+|.|.++.++||.|.|-+++...+.|.+++|||.+|+|+.|
T Consensus 167 ~~Pii~gSal~ale~~------~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg 240 (394)
T COG0050 167 DTPIIRGSALKALEGD------AKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVG 240 (394)
T ss_pred CcceeechhhhhhcCC------cchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccC
Confidence 4799999998764211 1123368999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecCCCcC
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTEVTTA 358 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~~~~~ 358 (639)
+.+.+.... ...+..++.+..| ++..+++.|||-|.+ .|. +++..|.+|+.++...|
T Consensus 241 ~eveivG~~-----~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~p 301 (394)
T COG0050 241 EEVEIVGIK-----ETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKP 301 (394)
T ss_pred CEEEEeccc-----ccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEeecCCcccc
Confidence 999998542 1244556665544 357899999999865 454 57889999999876433
No 41
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.4e-36 Score=335.59 Aligned_cols=281 Identities=26% Similarity=0.315 Sum_probs=227.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCC---------------------ccccccccccccccceeEeeeeEEEeec
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------------HERAMDSISLERERGITIASKVTGISWR 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~ 117 (639)
...||+|+||+|||||||+++||+.+|.... ..+++|..++|++||+|++.....+.|+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4689999999999999999999999874221 1258999999999999999999999999
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHH
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVES 196 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~ 196 (639)
+++++|||||||.+|..++..+++.+|++|+||||.+|++.||++++..+..++++ +|+|+||+|+..++...+.++.+
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~ 185 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIRE 185 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875 57899999997766666777777
Q ss_pred HHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeeccc
Q 006610 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYL 276 (639)
Q Consensus 197 ~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~ 276 (639)
++.+++..+++. ...|++++||++|.+....... ..|.....|++. ++.+|.|....++||++.|..++...+.
T Consensus 186 ~l~~~~~~~~~~---~~~~iipvSA~~g~ni~~~~~~--~~wy~G~tLl~~-L~~i~~~~~~~~~p~r~~I~~v~~~~~~ 259 (474)
T PRK05124 186 DYLTFAEQLPGN---LDIRFVPLSALEGDNVVSQSES--MPWYSGPTLLEV-LETVDIQRVVDAQPFRFPVQYVNRPNLD 259 (474)
T ss_pred HHHHHHHhcCCC---CCceEEEEEeecCCCccccccc--ccccchhhHHHH-HhhcCCCCCCCCCCceeeEEEEEecCCc
Confidence 777776665531 1368999999999966543321 112223456664 4677877777789999999888654332
Q ss_pred ceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--CCCCCCcCCeeeecC
Q 006610 277 GRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GMTKPSIGHTVANTE 354 (639)
Q Consensus 277 G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~Gdtl~~~~ 354 (639)
.+-..|+|.+|+|++||+|.+.+.+ ...+|++|+.++ .++++|.|||.|++. +..++..||+||+++
T Consensus 260 ~~g~~G~V~sG~l~~Gd~v~i~P~~-------~~~~VksI~~~~----~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~ 328 (474)
T PRK05124 260 FRGYAGTLASGVVKVGDRVKVLPSG-------KESNVARIVTFD----GDLEEAFAGEAITLVLEDEIDISRGDLLVAAD 328 (474)
T ss_pred ccceEEEEEeEEEecCCEEEEecCC-------ceEEEEEEEEcC----ccccCcCCCCEEEEEeCCccccCCccEEECCC
Confidence 2235799999999999999999753 467899998764 378999999999884 445688999999975
Q ss_pred CC
Q 006610 355 VT 356 (639)
Q Consensus 355 ~~ 356 (639)
.+
T Consensus 329 ~~ 330 (474)
T PRK05124 329 EA 330 (474)
T ss_pred CC
Confidence 43
No 42
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.2e-36 Score=346.76 Aligned_cols=339 Identities=23% Similarity=0.304 Sum_probs=255.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev 136 (639)
..+.++|+|+||+|||||||+++|.... ......+|+|.......+.|+++.++|||||||.+|..++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~------------v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~ 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN------------VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMR 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC------------ccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHH
Confidence 3467899999999999999999997541 1122357899998888999999999999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc--cccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE--QLDF 214 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~--~~~~ 214 (639)
.++++.+|++|||||+.+|+++||.++|..+...++|+|||+||+|++++++.+ +..++.+ .+...+ ..++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~---V~~eL~~----~~~~~e~~g~~v 427 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDR---VKQELSE----YGLVPEEWGGDT 427 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHH---HHHHHHH----hcccHHHhCCCc
Confidence 999999999999999999999999999999999999999999999998776533 3333322 111111 1137
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC--CCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV--PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l--P~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
|++++||++|. |+++|+++|.... ..+..+++.|+.++|++++.+++.|.+++++|++|+|+.|
T Consensus 428 p~vpvSAktG~--------------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~G 493 (787)
T PRK05306 428 IFVPVSAKTGE--------------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVG 493 (787)
T ss_pred eEEEEeCCCCC--------------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecC
Confidence 89999999999 9999999987532 2345567899999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC-CcCCeeeecCCC---------------
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT--------------- 356 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~--------------- 356 (639)
|.|++.+ ...+|..|+. .+..++++|.|||+|.|.||+++ .+||||+...+.
T Consensus 494 d~vv~g~---------~~gkVr~m~~---~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~ 561 (787)
T PRK05306 494 DIVVAGT---------TYGRVRAMVD---DNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAR 561 (787)
T ss_pred CEEEECC---------cEEEEEEEEC---CCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHH
Confidence 9998852 3356666554 34468999999999999999988 899999843221
Q ss_pred ---------cCCCCcc--CCCC---eeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC----------
Q 006610 357 ---------TALPTIE--LDPP---TISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG---------- 412 (639)
Q Consensus 357 ---------~~l~~~~--~~~P---~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~---------- 412 (639)
..+..+. +..+ .+.+.+.+... .+...|.+.|.++..+++.+++-..
T Consensus 562 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~---------Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv 632 (787)
T PRK05306 562 EKKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQ---------GSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDV 632 (787)
T ss_pred HHHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCc---------chHHHHHHHHHhhcccCCceEEEeeccCCCCHHHH
Confidence 1122111 1112 46777777553 5778999999999999999988542
Q ss_pred ----CCceEEEEecChhHHHHHHHHHHHcCcEEEEeCCeEEEEe
Q 006610 413 ----MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKT 452 (639)
Q Consensus 413 ----~~~~~~v~g~GelhL~vl~e~Lrreg~ev~vs~P~V~yrE 452 (639)
.++. +|-|++----.-+....+++|+++... .|+|+=
T Consensus 633 ~la~~~~a-~ii~Fnv~~~~~~~~~a~~~~v~i~~~--~iIY~l 673 (787)
T PRK05306 633 TLAAASNA-IIIGFNVRPDAKARKLAEQEGVDIRYY--SIIYDL 673 (787)
T ss_pred HHHHhcCC-EEEEEcCCCCHHHHHHHHHcCCEEEEe--ChHHHH
Confidence 1233 344444322222223334557766654 566653
No 43
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=9.1e-36 Score=325.48 Aligned_cols=263 Identities=24% Similarity=0.319 Sum_probs=216.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee---------------c-----
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---------------R----- 117 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~---------------~----- 117 (639)
+...||+++||+|||||||+.+|++. ..|..++|++||+|++..+..+.+ .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~---------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGV---------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPD 102 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCC---------CcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccc
Confidence 45689999999999999999999965 236788999999999988876521 0
Q ss_pred -------------CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-CchhHHHHHHHHHHcCCC-cEEEEcCCC
Q 006610 118 -------------ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLR-PILLLNKVD 182 (639)
Q Consensus 118 -------------~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~lp-~IvviNKiD 182 (639)
.+.++|||||||.+|...+.+++..+|+++|||||.+| +++||++++..+..++++ +|+|+||+|
T Consensus 103 ~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiD 182 (460)
T PTZ00327 103 NPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKID 182 (460)
T ss_pred ccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccc
Confidence 24799999999999999999999999999999999997 899999999999999997 578999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCC
Q 006610 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAP 262 (639)
Q Consensus 183 ~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p 262 (639)
+. +.+...+..+++.+++..... ..+|++++||++|. |++.|+++|.+.+|.|..+.++|
T Consensus 183 lv--~~~~~~~~~~ei~~~l~~~~~----~~~~iipVSA~~G~--------------nI~~Ll~~L~~~lp~~~r~~~~p 242 (460)
T PTZ00327 183 LV--KEAQAQDQYEEIRNFVKGTIA----DNAPIIPISAQLKY--------------NIDVVLEYICTQIPIPKRDLTSP 242 (460)
T ss_pred cc--CHHHHHHHHHHHHHHHHhhcc----CCCeEEEeeCCCCC--------------CHHHHHHHHHhhCCCCCCCCCCC
Confidence 95 345556666777776654322 24789999999998 99999999999999998888999
Q ss_pred ceeEEEeeeee--------cccceEEEEEEEeeeeecCCEEEEeeccC----CCCcee----EEeEEEEEEeeeCCceee
Q 006610 263 FQMLVTMMEKD--------FYLGRILTGRVSSGVVSVGDKVHGLRITD----SGTEKI----EEGKVTKLMKKKGTGMVL 326 (639)
Q Consensus 263 ~~~~V~~~~~d--------~~~G~i~~grV~sG~l~~gd~v~~~~~~~----~~~~~~----~~~kV~~l~~~~g~~~~~ 326 (639)
|+++|...+.. ++.|.++.|+|.+|++++||.|.+.+.+. .+ ++ ...+|++|+.+ ..+
T Consensus 243 ~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g--~~~~~~~~~~VksI~~~----~~~ 316 (460)
T PTZ00327 243 PRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGG--EFTCRPIRTRIVSLFAE----NNE 316 (460)
T ss_pred cEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccC--ccccccceEEEEEEEEC----CeE
Confidence 99999876643 34799999999999999999999997531 01 11 24689999875 468
Q ss_pred eccCCCCceEEec-----CC--CCCCcCCeeeecCC
Q 006610 327 IDSAGAGDIISVA-----GM--TKPSIGHTVANTEV 355 (639)
Q Consensus 327 v~~a~aGdIv~i~-----gl--~~~~~Gdtl~~~~~ 355 (639)
+++|.|||.++|. ++ +++..|++|++++.
T Consensus 317 v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 317 LQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred CCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 9999999999884 33 35778999998753
No 44
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=5.9e-35 Score=328.26 Aligned_cols=299 Identities=24% Similarity=0.305 Sum_probs=238.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc-eEEEEeCCCCCCchHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~-~i~iIDTPGh~dF~~ev~ 137 (639)
+.++|+++||+|||||||+++|.... ......+|+|.......+.|++. .++|||||||.+|...+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~------------v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~ 153 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK------------VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRA 153 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC------------cccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHH
Confidence 56799999999999999999997642 12223468998888888888665 999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc--ccccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE--QLDFP 215 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~--~~~~P 215 (639)
++++.+|++|||+|+.+|+++||.++++.+...++|+|+++||+|++++++++. .+.+.+ .++... ..++|
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v---~~~L~~----~g~~~~~~~~~~~ 226 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRV---KQELSE----YGLVPEDWGGDTI 226 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHH---HHHHHH----hhhhHHhcCCCce
Confidence 999999999999999999999999999999999999999999999987666433 222221 221111 11367
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHh--hCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR--HVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~--~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd 293 (639)
++++||++|. |+++|+++|.. .++.+..+++.|+++.|+++..+++.|.+++++|++|+|++||
T Consensus 227 ~v~iSAktGe--------------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd 292 (587)
T TIGR00487 227 FVPVSALTGD--------------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGD 292 (587)
T ss_pred EEEEECCCCC--------------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCC
Confidence 9999999999 99999999864 3445555678999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC-CcCCeeeecCCC----------------
Q 006610 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT---------------- 356 (639)
Q Consensus 294 ~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~---------------- 356 (639)
.|.+.+. ..||..|+..+| ..+++|.||++|.|.|++++ ..||+++...+.
T Consensus 293 ~iv~~~~---------~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~ 360 (587)
T TIGR00487 293 IVVVGAA---------YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQ 360 (587)
T ss_pred EEEECCC---------ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9988642 357888887665 46899999999999999986 889999743211
Q ss_pred --------cCCCCcc-----CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEe
Q 006610 357 --------TALPTIE-----LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIP 411 (639)
Q Consensus 357 --------~~l~~~~-----~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~ 411 (639)
..+..+. -..|.+.+.+++.+. .+...|.+.|.++..+++.+++-.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~---------Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 361 KALSRSVKVTLDNLFEQIKEGELKELNIILKADVQ---------GSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HhhhhccccchhHhhhhhhccCCceEEEEEEeCCc---------chHHHHHHHHHhhcccCCeEEEEE
Confidence 0111111 123677888887653 577899999999998999998754
No 45
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1.7e-34 Score=326.79 Aligned_cols=252 Identities=27% Similarity=0.357 Sum_probs=216.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCchHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.|+++||+|||||||+++|++. .+|..++|++||+|+...+..+.. ++..++|||||||.+|...+..++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~---------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV---------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC---------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHh
Confidence 5899999999999999999753 247788999999999998887766 457899999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEec
Q 006610 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~ 219 (639)
..+|++++|||+.+|+++||++++..+...++|. |||+||+|+. +.+++.++.+++.+++...++. ..|++++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv--~~~~~~~v~~ei~~~l~~~~~~----~~~ii~V 146 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV--DEARIAEVRRQVKAVLREYGFA----EAKLFVT 146 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC--CHHHHHHHHHHHHHHHHhcCCC----CCcEEEE
Confidence 9999999999999999999999999999999996 6899999984 4455666777787777766553 2689999
Q ss_pred ccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEee
Q 006610 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLR 299 (639)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~ 299 (639)
||++|. |++.|+++|.+. +.|....++||++.|..++..++.|.+++|+|.+|+|++||.|.+.+
T Consensus 147 SA~tG~--------------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p 211 (614)
T PRK10512 147 AATEGR--------------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTG 211 (614)
T ss_pred eCCCCC--------------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcC
Confidence 999999 999999999765 45555578999999999999999999999999999999999999986
Q ss_pred ccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cC-CC--CCCcCCeeeecC
Q 006610 300 ITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG-MT--KPSIGHTVANTE 354 (639)
Q Consensus 300 ~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~g-l~--~~~~Gdtl~~~~ 354 (639)
.+ ...+|++|+.++ .++++|.|||.|++ .| ++ ++..||+||+++
T Consensus 212 ~~-------~~~~VrsIq~~~----~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 212 VN-------KPMRVRGLHAQN----QPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred CC-------CcEEEEEEecCC----cCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 42 456899988753 58999999999987 55 53 689999999864
No 46
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=330.61 Aligned_cols=278 Identities=27% Similarity=0.292 Sum_probs=225.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------------C--------ccccccccccccccceeEeeeeEEEeecC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------P--------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------~--------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
..||+|+||+|||||||+++|++..|... . ..+++|..++|++||+|++.....+.|++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 46899999999999999999999887422 0 02589999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESL 197 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~ 197 (639)
.+++|||||||.+|...+..++..+|++|||||+.+|+++||++++..+...+++ +|||+||+|+...+.+.+.++.++
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875 567999999976566667777788
Q ss_pred HHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccc
Q 006610 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLG 277 (639)
Q Consensus 198 i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G 277 (639)
+.+++..+++. ++|++++||++|.+....... ..|.....|++.| +.++.|....++||++.|..++...+.+
T Consensus 184 i~~~~~~~~~~----~~~iipiSA~~g~ni~~~~~~--~~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~~ 256 (632)
T PRK05506 184 YRAFAAKLGLH----DVTFIPISALKGDNVVTRSAR--MPWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLDF 256 (632)
T ss_pred HHHHHHHcCCC----CccEEEEecccCCCccccccC--CCcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCCc
Confidence 87777777763 367999999999865543321 1222235677665 4556666667899999998877643322
Q ss_pred eEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--CCCCCCcCCeeeecCC
Q 006610 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GMTKPSIGHTVANTEV 355 (639)
Q Consensus 278 ~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--gl~~~~~Gdtl~~~~~ 355 (639)
+-..|+|.+|+|++||.|.+.+.+ ...+|++|+.++ .++++|.|||.|+|. +-.++..|++||+++.
T Consensus 257 ~g~~G~v~~G~l~~gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 257 RGFAGTVASGVVRPGDEVVVLPSG-------KTSRVKRIVTPD----GDLDEAFAGQAVTLTLADEIDISRGDMLARADN 325 (632)
T ss_pred eEEEEEEecceeecCCEEEEcCCC-------ceEEEEEEEECC----ceeCEEcCCCeEEEEecCccccCCccEEecCCC
Confidence 336799999999999999998753 467999998764 468999999999884 3346889999999865
No 47
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=4.4e-34 Score=310.99 Aligned_cols=266 Identities=27% Similarity=0.350 Sum_probs=211.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--------------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-------------------- 117 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-------------------- 117 (639)
+...||+++||+|||||||+++|... .+|..+.|++||+|+...+..+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~---------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGV---------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNC 77 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCe---------ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccc
Confidence 34689999999999999999999432 4789999999999999877654442
Q ss_pred ------CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHH
Q 006610 118 ------ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEE 189 (639)
Q Consensus 118 ------~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~ 189 (639)
.++++|||||||.+|...+.+++..+|++++|+|+.++. ..++..++..+...+++ +++|+||+|+... .
T Consensus 78 ~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~--~ 155 (411)
T PRK04000 78 GSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK--E 155 (411)
T ss_pred ccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc--h
Confidence 268999999999999999999999999999999999997 89999999999888875 7889999999542 2
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEe
Q 006610 190 RCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTM 269 (639)
Q Consensus 190 ~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~ 269 (639)
...+..+++..++.... ...+|++++||++|. |++.|+++|.+.+|.|..+.++||++.|.+
T Consensus 156 ~~~~~~~~i~~~l~~~~----~~~~~ii~vSA~~g~--------------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~ 217 (411)
T PRK04000 156 RALENYEQIKEFVKGTV----AENAPIIPVSALHKV--------------NIDALIEAIEEEIPTPERDLDKPPRMYVAR 217 (411)
T ss_pred hHHHHHHHHHHHhcccc----CCCCeEEEEECCCCc--------------CHHHHHHHHHHhCCCCCCCCCCCceEEEEe
Confidence 22223344444443221 113689999999999 999999999999998888789999999998
Q ss_pred eeee--------cccceEEEEEEEeeeeecCCEEEEeeccC---CCCce--eEEeEEEEEEeeeCCceeeeccCCCCceE
Q 006610 270 MEKD--------FYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDII 336 (639)
Q Consensus 270 ~~~d--------~~~G~i~~grV~sG~l~~gd~v~~~~~~~---~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv 336 (639)
+++. ++.|.++.|||.+|+|++||.|.+.+.+. .+... ....+|++|..++ .++++|.|||.|
T Consensus 218 ~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~----~~~~~a~~G~~v 293 (411)
T PRK04000 218 SFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGG----EKVEEARPGGLV 293 (411)
T ss_pred eeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECC----EECCEEcCCCEE
Confidence 8743 45678999999999999999999997531 00000 0246899998653 689999999998
Q ss_pred Eec-----CC--CCCCcCCeeeecCCC
Q 006610 337 SVA-----GM--TKPSIGHTVANTEVT 356 (639)
Q Consensus 337 ~i~-----gl--~~~~~Gdtl~~~~~~ 356 (639)
+|+ ++ .++..|+.||+++.+
T Consensus 294 ~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 294 GVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred EEEeccCCCCCHHHccCccEEEcCCCC
Confidence 884 33 257789999998654
No 48
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.1e-33 Score=308.14 Aligned_cols=264 Identities=26% Similarity=0.334 Sum_probs=211.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---------------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--------------------- 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--------------------- 117 (639)
...||+++||+|||||||+++|... .+|..+.|++||+|+...+..+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~---------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV---------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCG 73 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe---------ecccCHhHHHcCceeEecccccccccccccCccccccccccccccc
Confidence 3579999999999999999999642 3688899999999999886654321
Q ss_pred -----CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHH
Q 006610 118 -----ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (639)
Q Consensus 118 -----~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (639)
+..++|||||||.+|...+..++..+|++|+||||.+|. +.||++++..+...+++ +++|+||+|+.. .+.
T Consensus 74 ~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~--~~~ 151 (406)
T TIGR03680 74 SETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS--KEK 151 (406)
T ss_pred cccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC--HHH
Confidence 368999999999999999999999999999999999998 89999999999888876 688999999954 223
Q ss_pred HHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEee
Q 006610 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMM 270 (639)
Q Consensus 191 ~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~ 270 (639)
..+..+++.+++.... ...+|++++||++|. |++.|+++|...+|.|..+.+.||+++|..+
T Consensus 152 ~~~~~~~i~~~l~~~~----~~~~~ii~vSA~~g~--------------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~ 213 (406)
T TIGR03680 152 ALENYEEIKEFVKGTV----AENAPIIPVSALHNA--------------NIDALLEAIEKFIPTPERDLDKPPLMYVARS 213 (406)
T ss_pred HHHHHHHHHhhhhhcc----cCCCeEEEEECCCCC--------------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEE
Confidence 3333455555544321 114689999999999 9999999999999988878899999999988
Q ss_pred eee--------cccceEEEEEEEeeeeecCCEEEEeeccCC---CCc--eeEEeEEEEEEeeeCCceeeeccCCCCceEE
Q 006610 271 EKD--------FYLGRILTGRVSSGVVSVGDKVHGLRITDS---GTE--KIEEGKVTKLMKKKGTGMVLIDSAGAGDIIS 337 (639)
Q Consensus 271 ~~d--------~~~G~i~~grV~sG~l~~gd~v~~~~~~~~---~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~ 337 (639)
+.. +++|.++.|+|.+|+|++||.|.+.+.... +.. .....+|++|... ..++++|.|||.|+
T Consensus 214 f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~----~~~~~~a~~G~~v~ 289 (406)
T TIGR03680 214 FDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG----GYKVEEARPGGLVG 289 (406)
T ss_pred EeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEEC----CEECCEEcCCCEEE
Confidence 743 447789999999999999999999875210 000 0023589999865 36899999999998
Q ss_pred ec-----CC--CCCCcCCeeeecCC
Q 006610 338 VA-----GM--TKPSIGHTVANTEV 355 (639)
Q Consensus 338 i~-----gl--~~~~~Gdtl~~~~~ 355 (639)
|. ++ .++..|++||+++.
T Consensus 290 i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 290 VGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred EeeccCCCCCHHHcccccEEEcCCC
Confidence 73 33 25778999999764
No 49
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=3.8e-33 Score=317.44 Aligned_cols=250 Identities=24% Similarity=0.334 Sum_probs=203.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec----CceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR----ENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~----~~~i~iIDTPGh~dF~ 133 (639)
.+.++|+|+||+|||||||+++|+...+ .....+|+|.......+.|. ++.++|||||||.+|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC------------ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH
Confidence 4678999999999999999999987632 22334688877666666553 5899999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH--H-HhcCCCCc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL--F-ANLGATDE 210 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l--~-~~~g~~~~ 210 (639)
..+.++++.+|++|||||+.+|+++||.+.|..+...++|+|+|+||+|++..+... +.+++... + ..++
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~---v~~eL~~~~ll~e~~g---- 382 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTER---IKQQLAKYNLIPEKWG---- 382 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHH---HHHHHHHhccchHhhC----
Confidence 999999999999999999999999999999999999999999999999997765432 33333221 1 1111
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC--CCCCCCCCCceeEEEeeeeecccceEEEEEEEeee
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP--PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP--~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~ 288 (639)
..+|++++||++|. |+++|+++|..... .+..+++.|+.+.|+++..+++.|.+++++|++|+
T Consensus 383 -~~vpvv~VSAktG~--------------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGt 447 (742)
T CHL00189 383 -GDTPMIPISASQGT--------------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGT 447 (742)
T ss_pred -CCceEEEEECCCCC--------------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCE
Confidence 13789999999999 99999999987542 34456678999999999999999999999999999
Q ss_pred eecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCC-CCCCcCCeeeec
Q 006610 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGM-TKPSIGHTVANT 353 (639)
Q Consensus 289 l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl-~~~~~Gdtl~~~ 353 (639)
|+.||.|.+.+ ...+|..++.. ...++++|.|||+|+|.|+ +...+||+|.-.
T Consensus 448 Lr~GD~vv~g~---------~~gkVr~m~~~---~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~ 501 (742)
T CHL00189 448 LHIGDIIVIGT---------SYAKIRGMINS---LGNKINLATPSSVVEIWGLSSVPATGEHFQVF 501 (742)
T ss_pred EecCCEEEECC---------cceEEEEEEcC---CCcCccEEcCCCceEecCcccCCCCCCEEEEe
Confidence 99999998764 23466666544 4468899999999999999 557789998643
No 50
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=9.1e-33 Score=311.99 Aligned_cols=253 Identities=28% Similarity=0.368 Sum_probs=213.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++||+|||||||+++|++.. +|..+.|+++|+|++.....+.++++.++|||||||.+|...+..++.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~---------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA---------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc---------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhc
Confidence 79999999999999999998541 466778899999999999999999999999999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecc
Q 006610 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~S 220 (639)
.+|++++|||+.+|+++||.+++..+...++| +|+|+||+|+. +...+..+.+++.+++...++.. .+|++++|
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv--~~~~~~~~~~ei~~~l~~~~~~~---~~~ii~vS 147 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV--NEEEIKRTEMFMKQILNSYIFLK---NAKIFKTS 147 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC--CHHHHHHHHHHHHHHHHHhCCCC---CCcEEEEe
Confidence 99999999999999999999999999999999 99999999995 34445556667777776655421 36899999
Q ss_pred cccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC-CCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEee
Q 006610 221 AKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK-ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLR 299 (639)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~-~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~ 299 (639)
|++|. |++++++.|...++... ...++||++.|..++..++.|.++.|+|.+|++++||+|.+.|
T Consensus 148 A~tG~--------------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P 213 (581)
T TIGR00475 148 AKTGQ--------------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLP 213 (581)
T ss_pred CCCCC--------------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECC
Confidence 99998 88888888766553321 1247899999999999999999999999999999999999997
Q ss_pred ccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeeeec
Q 006610 300 ITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANT 353 (639)
Q Consensus 300 ~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~~~ 353 (639)
.+ ...+|++|+.+. .++++|.|||.|+| .|++ ++..|..++++
T Consensus 214 ~~-------~~~~Vr~iq~~~----~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 214 IN-------HEVRVKAIQAQN----QDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred CC-------ceEEEeEEEECC----ccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 53 467899998753 58999999999987 4654 57889666543
No 51
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-33 Score=296.88 Aligned_cols=284 Identities=25% Similarity=0.334 Sum_probs=241.2
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------------------CccccccccccccccceeEeeeeEEEe
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGIS 115 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~e~ergiTi~~~~~~~~ 115 (639)
..+....|++++||+|+|||||+.+||+..|... ...|++|...+||+||+|.+.+...|+
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 3445678999999999999999999999887421 125899999999999999999999999
Q ss_pred ecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-------chhHHHHHHHHHHcCCC-cEEEEcCCCCCCCC
Q 006610 116 WRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-------LAQTKFVLAKALKYGLR-PILLLNKVDRPAVS 187 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-------~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~ 187 (639)
.+.+.++|+|+|||.||...+......||.++|||||..|. ..||+++...++.+|+. .||++||||..+|+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 99999999999999999999999999999999999998764 47999999999999997 57899999999999
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCCccccccEEecccccCCCCCcccCC-CcccccchHHHHHHHHhhCCCCCCCCCCCcee
Q 006610 188 EERCDEVESLVFDLF-ANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPPKASLDAPFQM 265 (639)
Q Consensus 188 ~~~~~~v~~~i~~l~-~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~ 265 (639)
.++++++.+.+..++ +..|+.+. ++-++++|++.|.+....... .-.+|+.-..||+.|-. +-.|....+.||++
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es--~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~l 408 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKES--SVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRL 408 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccC--CcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEE
Confidence 999999999999998 67788765 356999999999976554332 12345555678888766 66677778889999
Q ss_pred EEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC-
Q 006610 266 LVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT- 342 (639)
Q Consensus 266 ~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~- 342 (639)
.|.+++..+..|..++|||.+|.|.+||.|++.+.. ....|++|..- ..+...|.|||-|.+ .|+.
T Consensus 409 tIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~-------e~~~vk~l~~~----~~~~~~a~AGD~Vsl~L~~i~~ 477 (603)
T KOG0458|consen 409 TISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR-------EDATVKGLTSN----DEPKTWAVAGDNVSLKLPGILP 477 (603)
T ss_pred EhhheeecCCCeeEEEEEEeccccccCCEEEEecCc-------ceEEEEeeecC----CCcceeEeeCCEEEEecCccCh
Confidence 999999999999899999999999999999999753 56788888764 357888999999876 4643
Q ss_pred -CCCcCCeeee
Q 006610 343 -KPSIGHTVAN 352 (639)
Q Consensus 343 -~~~~Gdtl~~ 352 (639)
.+.+||++|.
T Consensus 478 n~v~~g~i~~~ 488 (603)
T KOG0458|consen 478 NLVQVGDIADS 488 (603)
T ss_pred hhcccceeeec
Confidence 5889999984
No 52
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-32 Score=277.24 Aligned_cols=297 Identities=26% Similarity=0.334 Sum_probs=240.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC-----------CCC----------ccccccccccccccceeEeeeeEEEeec
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA-----------DIP----------HERAMDSISLERERGITIASKVTGISWR 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~-----------~~~----------~~~v~D~~~~e~ergiTi~~~~~~~~~~ 117 (639)
...++..+|++|.|||||+.+||+.+.. ... .....|-...|+|.||||+..+..|..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4578999999999999999999987752 110 0246788889999999999999999999
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHH
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVES 196 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~ 196 (639)
.+++.|.|||||+.|...+....+.||.+|++|||..|+..||+++--.+..+|++. ++++||||+.+.+.+.++++.+
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 5689999999999999999999
Q ss_pred HHHHHHHhcCCCCccccccEEecccccCCCCCcccCC-CcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeec-
Q 006610 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDF- 274 (639)
Q Consensus 197 ~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~- 274 (639)
+...+..+++.... .++++||+.|.+....+.. ||+++..+-++|+.+ ........+||++.|..+..-.
T Consensus 165 dy~~fa~~L~~~~~----~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v----~i~~~~~~~~~RfPVQ~V~Rp~~ 236 (431)
T COG2895 165 DYLAFAAQLGLKDV----RFIPISALLGDNVVSKSENMPWYKGPTLLEILETV----EIADDRSAKAFRFPVQYVNRPNL 236 (431)
T ss_pred HHHHHHHHcCCCcc----eEEechhccCCcccccccCCCcccCccHHHHHhhc----cccccccccceeeceEEecCCCC
Confidence 99999999998764 4899999999876554332 666666666666554 3333345678999998776433
Q ss_pred -ccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC--CCCcCCeee
Q 006610 275 -YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT--KPSIGHTVA 351 (639)
Q Consensus 275 -~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~~Gdtl~ 351 (639)
|.| -.|+|.+|++++||.|.+.|++ +..+|++|..+.| +.++|.||+-|.+.=-+ +++.||.|+
T Consensus 237 dfRG--yaGtiasG~v~~Gd~vvvlPsG-------~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~ 303 (431)
T COG2895 237 DFRG--YAGTIASGSVKVGDEVVVLPSG-------KTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIV 303 (431)
T ss_pred cccc--cceeeeccceecCCeEEEccCC-------CeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEE
Confidence 433 5689999999999999999874 5679999999988 78899999998875222 578899999
Q ss_pred ecCCCcCCCCccCCCCeeeeeeeecCCCCC
Q 006610 352 NTEVTTALPTIELDPPTISMTFGVNDSPLA 381 (639)
Q Consensus 352 ~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~ 381 (639)
..+.+.. +.-.+ ....+|....|+.
T Consensus 304 ~~~~~~~-~~~~f----~A~vvWm~~~pl~ 328 (431)
T COG2895 304 AADAPPA-VADAF----DADVVWMDEEPLL 328 (431)
T ss_pred ccCCCcc-hhhhc----ceeEEEecCCCCC
Confidence 9876533 22222 2445666666653
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-31 Score=280.30 Aligned_cols=250 Identities=29% Similarity=0.404 Sum_probs=220.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
.|+..||++||||||+.++.+. ..|..++|++||+||+..+..+...++.+.|||.|||+||...+..++.
T Consensus 2 ii~t~GhidHgkT~L~~altg~---------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG---------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc---------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhc
Confidence 5899999999999999999866 4588999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecc
Q 006610 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~S 220 (639)
..|.++||||+.+|+++||.+++..+..+|++. |+|+||+|+ +++.+.++..+++...+. +. +.|++..|
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~--~d~~r~e~~i~~Il~~l~---l~----~~~i~~~s 143 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADR--VDEARIEQKIKQILADLS---LA----NAKIFKTS 143 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccc--ccHHHHHHHHHHHHhhcc---cc----cccccccc
Confidence 999999999999999999999999999999998 899999999 555565555555544333 22 35789999
Q ss_pred cccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeec
Q 006610 221 AKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRI 300 (639)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~ 300 (639)
+++|. |+++|-+.|.+..-.+..+.+.||+++|...+..+++|++++|.++||+++.||.+++.+.
T Consensus 144 ~~~g~--------------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~ 209 (447)
T COG3276 144 AKTGR--------------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI 209 (447)
T ss_pred cccCC--------------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC
Confidence 99999 9999999998766556678899999999999999999999999999999999999999976
Q ss_pred cCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecC
Q 006610 301 TDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTE 354 (639)
Q Consensus 301 ~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~ 354 (639)
+ +..+|++|+.+. +++++|.||+.|++ .|. +++..||.|.+++
T Consensus 210 ~-------k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 210 N-------KEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred C-------CeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 4 678999998765 58999999999987 455 3688999998875
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=1.6e-31 Score=261.30 Aligned_cols=178 Identities=37% Similarity=0.502 Sum_probs=156.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc------cccccccccccccceeEeeeeEEEe--ecCceEEEEeCCCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH------ERAMDSISLERERGITIASKVTGIS--WRENELNMVDTPGHA 130 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~------~~v~D~~~~e~ergiTi~~~~~~~~--~~~~~i~iIDTPGh~ 130 (639)
++|||+++||+|||||||+++|+...+..... .+.+|..+.|+++++|+......+. +.++.++|||||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 58999999999999999999999998754321 3468999999999999999999999 999999999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCC
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVF-DLFANLGATD 209 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~-~l~~~~g~~~ 209 (639)
+|..++.++++.+|++|+|||+.+|+..|+.+++..+..+++|+|+|+||+|+. ..++.++.+++. .+++..+...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch---hhhHHHHHHHHHHHhccccccCc
Confidence 999999999999999999999999999999999999999999999999999996 456677777777 4455655443
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
. ..+|++++||++|+ |++.|+++|.+++|+
T Consensus 159 ~-~~~~vi~~Sa~~g~--------------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 159 E-EIVPVIPISALTGD--------------GIDELLEALVELLPS 188 (188)
T ss_dssp T-STEEEEEEBTTTTB--------------THHHHHHHHHHHS--
T ss_pred c-ccceEEEEecCCCC--------------CHHHHHHHHHHhCcC
Confidence 1 24899999999999 999999999999985
No 55
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.97 E-value=2.4e-31 Score=265.64 Aligned_cols=189 Identities=40% Similarity=0.655 Sum_probs=158.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeec----------CceEEEEeC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWR----------ENELNMVDT 126 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~----------~~~i~iIDT 126 (639)
|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++||+|+.++..++.|. ++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 7999999999999999999999988532 23578999999999999999998888886 788999999
Q ss_pred CCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC----CCH----HHHHHHHHHH
Q 006610 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSE----ERCDEVESLV 198 (639)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~----~~~~~v~~~i 198 (639)
|||.+|..++..+++.+|++|+|||+.+|+..||+++++.+...++|+|+|+||+|+.. .++ .++.++.+++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999862 333 3445566666
Q ss_pred HHHHHhcCCC------Cccccc-c----EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 199 FDLFANLGAT------DEQLDF-P----VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 199 ~~l~~~~g~~------~~~~~~-P----vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
..++..+... ++++.+ | |+|+||+.||+... . ....+..+|++|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~-~-----~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI-I-----KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEecc-c-----cccchHHHHHHHHhhCCCC
Confidence 6666555321 233445 7 99999999997632 1 2337889999999999987
No 56
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.9e-31 Score=278.02 Aligned_cols=248 Identities=29% Similarity=0.360 Sum_probs=207.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCchHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF~~ev 136 (639)
.+.+.|-|+||+|||||||+++|-+..- ......|||.......+.. ++.+|+|+|||||+-|..+.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~V------------AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMR 218 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSV------------AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMR 218 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCce------------ehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHH
Confidence 3678899999999999999999977521 2223358887766665554 57899999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH---HHhcCCCCcccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL---FANLGATDEQLD 213 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l---~~~~g~~~~~~~ 213 (639)
.|..+.+|.++|||.|.+|+++||.+.++.++..++|+||++||||++++++++ +.+++... .+++|. +
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pek---v~~eL~~~gi~~E~~GG-----d 290 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEK---VKRELLSQGIVVEDLGG-----D 290 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHH---HHHHHHHcCccHHHcCC-----c
Confidence 999999999999999999999999999999999999999999999999999955 33333221 233333 5
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh--CCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeec
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH--VPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSV 291 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~--lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~ 291 (639)
++++++||++|. |++.|.++++-. +-.-+.++++|+.+.|.....+++.|.+++.-|-.|||++
T Consensus 291 VQvipiSAl~g~--------------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkK 356 (683)
T KOG1145|consen 291 VQVIPISALTGE--------------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKK 356 (683)
T ss_pred eeEEEeecccCC--------------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccc
Confidence 789999999999 999999988643 3344567899999999999999999999999999999999
Q ss_pred CCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCC-cCCeee
Q 006610 292 GDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPS-IGHTVA 351 (639)
Q Consensus 292 gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~-~Gdtl~ 351 (639)
|+.+.... ..+||+.|+..+| +++++|.||.-+-|.|++++. .||-+-
T Consensus 357 G~vlV~G~---------~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 357 GSVLVAGK---------SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred ccEEEEec---------hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEE
Confidence 99876642 4689999998888 589999999999999999865 588763
No 57
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=8.7e-30 Score=250.06 Aligned_cols=189 Identities=32% Similarity=0.438 Sum_probs=159.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
..||+++||+|||||||+++|++...... ....++|+.+.|++||+|+......+++++.+++|+|||||.+|..+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 36899999999999999999998643211 12357899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+.+++..+|++++|||+.+|+..|++++|..+.+.++| +|+|+||+|+.. +.+..+.+.+++.+++..++++.. ++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~~~~~~~i~~~l~~~g~~~~--~v 158 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELLELVEMEVRELLSKYGFDGD--NT 158 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHHHHHHHHHHHHHHHhccccc--CC
Confidence 99999999999999999999999999999999999998 568999999963 444455677888888888887544 58
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
|++++||++|.+..+ +.+ +.+++..|+++|.+..|+|
T Consensus 159 ~iipiSa~~g~n~~~--~~~--w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 159 PIVRGSALKALEGDD--PNK--WVKKILELLDALDSYIPTP 195 (195)
T ss_pred eEEEeeCccccCCCC--CCc--chhcHhHHHHHHHhCCCCC
Confidence 999999999986432 111 2225889999998888765
No 58
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.97 E-value=1.5e-29 Score=260.34 Aligned_cols=129 Identities=42% Similarity=0.615 Sum_probs=120.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+....+.|++++++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 799999999999999999999888532 23678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHH
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER 190 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~ 190 (639)
+.++++.+|++|+|||+.+|++.+|..+|+.+.+.++|+++|+||+|+.+++++.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~ 135 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFR 135 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999998877644
No 59
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.1e-29 Score=268.04 Aligned_cols=251 Identities=27% Similarity=0.397 Sum_probs=205.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---CceEEEEeCCCCCCchHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGGE 135 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~---~~~i~iIDTPGh~dF~~e 135 (639)
+.+-|+++||+|||||||++.+-+.. .......|||.....+.+.++ ...|+|+|||||+-|..+
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~------------Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~m 71 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN------------VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAM 71 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc------------cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHH
Confidence 45679999999999999999997652 222334589999888888884 469999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc--c
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL--D 213 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~--~ 213 (639)
..|....+|.++||||+.+|+++||.+.+..++..++|+||++||+|++.+++++ +..++.+ .|+..+.+ +
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~---v~~el~~----~gl~~E~~gg~ 144 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDK---VKQELQE----YGLVPEEWGGD 144 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHH---HHHHHHH----cCCCHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999998855 3333322 23333222 4
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC--CCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeec
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV--PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSV 291 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l--P~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~ 291 (639)
..++++||++|. |+++||++|+-.. -.-+..++.+....|....-+++.|.++..-|++|+|++
T Consensus 145 v~~VpvSA~tg~--------------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~ 210 (509)
T COG0532 145 VIFVPVSAKTGE--------------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKK 210 (509)
T ss_pred eEEEEeeccCCC--------------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEec
Confidence 779999999999 9999999986322 233456789999999999999999999999999999999
Q ss_pred CCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCC-cCCeeeecC
Q 006610 292 GDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPS-IGHTVANTE 354 (639)
Q Consensus 292 gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~-~Gdtl~~~~ 354 (639)
||.|.... ...+|..++.-.| .+++++.++--+.+.|++++. .||......
T Consensus 211 GD~iv~g~---------~~g~I~t~v~~~~---~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~~ 262 (509)
T COG0532 211 GDIIVAGG---------EYGRVRTMVDDLG---KPIKEAGPSKPVEILGLSEVPAAGDVFIVVK 262 (509)
T ss_pred CCEEEEcc---------CCCceEEeehhcC---CCccccCCCCCeEEeccccccccCceEEecC
Confidence 99998864 3457777777665 578888888778888888754 577665443
No 60
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-28 Score=245.97 Aligned_cols=259 Identities=28% Similarity=0.380 Sum_probs=205.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---------------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--------------------- 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--------------------- 117 (639)
...||+.+||+|||||||+.+|.+- .+|.+.+|-+|||||...++.....
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGv---------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg 79 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGV---------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCG 79 (415)
T ss_pred cceEeeeeeecccchhhheehhhce---------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCC
Confidence 3579999999999999999999765 5588999999999998777654321
Q ss_pred -----CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-CchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHH
Q 006610 118 -----ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (639)
Q Consensus 118 -----~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (639)
-+++.|+|+|||+-+...+.+.....|++||||+|++. +++||++++..+.-.|++ +|++-||+|+ .+.++
T Consensus 80 ~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl--V~~E~ 157 (415)
T COG5257 80 AETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL--VSRER 157 (415)
T ss_pred CCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce--ecHHH
Confidence 14789999999999999988989999999999999986 799999999999999998 5678899999 45666
Q ss_pred HHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEee
Q 006610 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMM 270 (639)
Q Consensus 191 ~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~ 270 (639)
..+..+++.++++..-+. +.|++++||.++. |++.|+++|.+++|.|.+|.++|.+|+|...
T Consensus 158 AlE~y~qIk~FvkGt~Ae----~aPIIPiSA~~~~--------------NIDal~e~i~~~IptP~rd~~~~p~m~v~RS 219 (415)
T COG5257 158 ALENYEQIKEFVKGTVAE----NAPIIPISAQHKA--------------NIDALIEAIEKYIPTPERDLDKPPRMYVARS 219 (415)
T ss_pred HHHHHHHHHHHhcccccC----CCceeeehhhhcc--------------CHHHHHHHHHHhCCCCccCCCCCceEEEEee
Confidence 666777777776543332 3689999999999 9999999999999999999999999999876
Q ss_pred ee--------ecccceEEEEEEEeeeeecCCEEEEeecc---CCCCc--eeEEeEEEEEEeeeCCceeeeccCCCCceEE
Q 006610 271 EK--------DFYLGRILTGRVSSGVVSVGDKVHGLRIT---DSGTE--KIEEGKVTKLMKKKGTGMVLIDSAGAGDIIS 337 (639)
Q Consensus 271 ~~--------d~~~G~i~~grV~sG~l~~gd~v~~~~~~---~~~~~--~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~ 337 (639)
|. ++-.|-+.-|.+.+|.++.||+|.+.+.- +.+.. .....+|.+|+. ...++++|.+|-.++
T Consensus 220 FDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~a----g~~~~~ea~PGGLvg 295 (415)
T COG5257 220 FDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQA----GGEDVEEARPGGLVG 295 (415)
T ss_pred cccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEe----CCeeeeeccCCceEE
Confidence 64 33468889999999999999999997642 11100 111234555542 346899999999999
Q ss_pred e-cCCCC-CCcCCee
Q 006610 338 V-AGMTK-PSIGHTV 350 (639)
Q Consensus 338 i-~gl~~-~~~Gdtl 350 (639)
| ++|+- +..+|-|
T Consensus 296 vGT~lDP~ltKaD~L 310 (415)
T COG5257 296 VGTKLDPTLTKADAL 310 (415)
T ss_pred EecccCcchhhhhhh
Confidence 8 57763 3334444
No 61
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.96 E-value=3e-29 Score=253.75 Aligned_cols=177 Identities=38% Similarity=0.601 Sum_probs=151.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
||+++||+|+|||||+++|++.+|... ...+++|+.+.|++||+|+......+.|++++++|||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 799999999999999999999987532 23578899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh-----------
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----------- 204 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~----------- 204 (639)
+.++++.+|++++|+|+.+|+..+++.+|+.+.+.++|+++|+||+|+.++++.+ +.+++.+.+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~---~~~~i~~~~~~~~~~~~~p~~~ 157 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEK---VYQEIKEKLSSDIVPMQKVGLA 157 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHH---HHHHHHHHHCCCeEEEECCcEe
Confidence 9999999999999999999999999999999999999999999999998877633 33333332211
Q ss_pred ---------------------------c----CCCCc------------cccccEEecccccCCCCCcccCCCcccccch
Q 006610 205 ---------------------------L----GATDE------------QLDFPVLYASAKEGWASSTFTKDPPADVRNM 241 (639)
Q Consensus 205 ---------------------------~----g~~~~------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl 241 (639)
+ ....+ ..-+||+++||.++. |+
T Consensus 158 ~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~--------------Gv 223 (237)
T cd04168 158 PNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI--------------GI 223 (237)
T ss_pred eeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc--------------CH
Confidence 0 00000 012899999999999 99
Q ss_pred HHHHHHHHhhCCCC
Q 006610 242 SQLLDAIIRHVPPP 255 (639)
Q Consensus 242 ~~Lld~I~~~lP~p 255 (639)
+.||+.|.+++|+|
T Consensus 224 ~~ll~~~~~~~p~~ 237 (237)
T cd04168 224 EELLEGITKLFPTS 237 (237)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999987
No 62
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.96 E-value=6.2e-29 Score=255.54 Aligned_cols=131 Identities=35% Similarity=0.551 Sum_probs=121.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC----------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG 128 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG 128 (639)
++|||+|+||+|+|||||+++|++.+|... ...+++|+.++|++||+|+......++|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 369999999999999999999999887522 2457899999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHH
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (639)
|.+|..++.++++.+|++|+|+|+.+++..++..+|+.+...++|+++|+||+|+.++++.
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~ 141 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPL 141 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999887764
No 63
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=3e-28 Score=274.70 Aligned_cols=264 Identities=24% Similarity=0.271 Sum_probs=193.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee------------------cCce
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW------------------RENE 120 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~------------------~~~~ 120 (639)
+.+.|+|+||+|||||||+++|.+..... ....++|.......+.+ +-..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~------------~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAA------------KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPG 72 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------CCCCceEEeeceeeccccccccccceeccccccccccCC
Confidence 45689999999999999999997553211 11122222211111111 1113
Q ss_pred EEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC-CCCH-----------
Q 006610 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-AVSE----------- 188 (639)
Q Consensus 121 i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~-~~~~----------- 188 (639)
++|||||||.+|...+.++++.+|++|+|+|+.+|+++||.+.+..+...++|+++++||+|+. .+..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999985 2221
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCCc--------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh---
Q 006610 189 -------ERCDEVESLVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR--- 250 (639)
Q Consensus 189 -------~~~~~v~~~i~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~--- 250 (639)
..+++...++...+...|+..+ ..++|++++||++|. |+++|++.+..
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe--------------Gi~dLl~~i~~~~~ 218 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE--------------GIPDLLMVLAGLAQ 218 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC--------------ChHHHHHHHHHHHH
Confidence 1122233334444555555432 135889999999999 99999988764
Q ss_pred -hCCCC-CCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeC-------
Q 006610 251 -HVPPP-KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKG------- 321 (639)
Q Consensus 251 -~lP~p-~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g------- 321 (639)
+++.+ ..+++.|+++.|++++.+++.|.+++++|.+|+|++||.|.+.+... ....+|+.|+.+.+
T Consensus 219 ~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~-----~i~~kVr~l~~~~~~~e~~~~ 293 (586)
T PRK04004 219 RYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG-----PIVTKVRALLKPRPLDEMRDP 293 (586)
T ss_pred HHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC-----cceEEEEEEecCcchhhcccc
Confidence 34433 34567899999999999999999999999999999999998876531 13468999987632
Q ss_pred -CceeeeccCCCCceEEe--cCCCCCCcCCeeeec
Q 006610 322 -TGMVLIDSAGAGDIISV--AGMTKPSIGHTVANT 353 (639)
Q Consensus 322 -~~~~~v~~a~aGdIv~i--~gl~~~~~Gdtl~~~ 353 (639)
.....+++|.|..-|-| .|++++..||.+.-.
T Consensus 294 ~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~~v~ 328 (586)
T PRK04004 294 EDKFKPVDEVVAAAGVKISAPDLEDALAGSPLRVV 328 (586)
T ss_pred ccccccccccCCCCceEEEeCCccccCCCCeEEEe
Confidence 13356777777665555 489888889887544
No 64
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=2e-27 Score=242.34 Aligned_cols=277 Identities=28% Similarity=0.370 Sum_probs=225.4
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC--CccccccccccccccceeEeeeeEEEeec----------------
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI--PHERAMDSISLERERGITIASKVTGISWR---------------- 117 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~--~~~~v~D~~~~e~ergiTi~~~~~~~~~~---------------- 117 (639)
+.....+|+.+||+|||||||+.+|....-.+. ..-.+.|..+-|-+||.|-+.++.-+-|+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 344578999999999999999999975432221 12346788889999999988887776664
Q ss_pred -------CceEEEEeCCCCCCchHHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH
Q 006610 118 -------ENELNMVDTPGHADFGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 118 -------~~~i~iIDTPGh~dF~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (639)
+..+.|+||-||+.+...+.+.| ...|..+|+|.|.+|++..|++++-.+...++|+|++++|+|. .+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~--~~d 270 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDM--VPD 270 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEeccc--CcH
Confidence 45688999999999998888887 4579999999999999999999999999999999999999999 556
Q ss_pred HHHHHHHHHHHHHHHhcCCC------------------CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 189 ERCDEVESLVFDLFANLGAT------------------DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~------------------~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++..+.+++..+++..+-- ..+.-+|++++|+.+|. |++ ||+.+..
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~--------------Gld-lL~e~f~ 335 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE--------------GLD-LLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc--------------cHH-HHHHHHH
Confidence 77788888888877643210 11224899999999998 776 5556667
Q ss_pred hCCCC-CCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeecc
Q 006610 251 HVPPP-KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDS 329 (639)
Q Consensus 251 ~lP~p-~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~ 329 (639)
.+|.. ..+..+||.|+|.+++...++|.++.|.|.+|.|..||+|++.|..+ | ++...+|++|... +..+++
T Consensus 336 ~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~-G--~fr~v~vkSIemh----~~rvds 408 (527)
T COG5258 336 LLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKD-G--KFREVVVKSIEMH----HYRVDS 408 (527)
T ss_pred hCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCC-C--cEEEEEEEEEEEe----eEEecc
Confidence 88876 34678999999999999999999999999999999999999987643 3 5778899999764 478999
Q ss_pred CCCCceEEe--cCCCC--CCcCCeeeecCCC
Q 006610 330 AGAGDIISV--AGMTK--PSIGHTVANTEVT 356 (639)
Q Consensus 330 a~aGdIv~i--~gl~~--~~~Gdtl~~~~~~ 356 (639)
|.||+|+.+ .|++. +..|.+|+....|
T Consensus 409 a~aG~iig~Al~gv~~e~lerGMVl~~~~~p 439 (527)
T COG5258 409 AKAGSIIGIALKGVEKEELERGMVLSAGADP 439 (527)
T ss_pred ccCCcEEEEEecccCHHHHhcceEecCCCCc
Confidence 999999755 68764 8899999876333
No 65
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.5e-28 Score=243.64 Aligned_cols=250 Identities=26% Similarity=0.329 Sum_probs=212.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---------CceEEEEeCCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---------ENELNMVDTPGHA 130 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~---------~~~i~iIDTPGh~ 130 (639)
..|++|+||+|+|||||..+|..-. .....|.++...+||+|.+..+..+... ..+++++|+|||+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~-----STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa 81 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELG-----STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA 81 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhc-----cchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH
Confidence 3799999999999999999998652 3445689999999999999888776542 3578999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC--CHHHHHHHHHHHHHHHHhcCCC
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV--SEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~--~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.+...+..+....|..++|||+..|.++||.+++-.....-.+.+||+||+|.... +...+++....+.+-++..++.
T Consensus 82 sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 82 SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 99988888889999999999999999999999999888888889999999997432 2344555566666667776665
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeee
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~ 288 (639)
. +.|++++||+.|+.. ..++.+|.+.|...+-.|.+++++||.|.|...+..++.|++.+|.|.+|.
T Consensus 162 g---~~PI~~vsa~~G~~~----------~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~ 228 (522)
T KOG0461|consen 162 G---NSPIVEVSAADGYFK----------EEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGV 228 (522)
T ss_pred C---CCceeEEecCCCccc----------hhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeE
Confidence 4 379999999999622 238999999999999999999999999999999999999999999999999
Q ss_pred eecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe
Q 006610 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338 (639)
Q Consensus 289 l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i 338 (639)
++.|+.|.+...+ ...||+++..++ .+|.+|.+||.+++
T Consensus 229 ~~ln~~iE~PAL~-------e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 229 LRLNTEIEFPALN-------EKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred EecCcEEeecccc-------hhhhhhhHHHHh----hhhhhhhcccceee
Confidence 9999999987543 445788887774 58999999999765
No 66
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=7.6e-27 Score=262.29 Aligned_cols=263 Identities=25% Similarity=0.295 Sum_probs=190.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec------------------Cce
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------ENE 120 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~------------------~~~ 120 (639)
+.+-|+|+||+|||||||+++|++..... ....|+|.......+.++ ...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~ 70 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPG 70 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc------------ccCCceecccCeeEeeeccccccccccccccccccccCc
Confidence 34679999999999999999998763211 112234433222222221 124
Q ss_pred EEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC-CCH------HH---
Q 006610 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA-VSE------ER--- 190 (639)
Q Consensus 121 i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~-~~~------~~--- 190 (639)
++|||||||.+|.....++++.+|++++|+|+++|+++||.+.+..+...++|+|+++||+|+.. +.. .+
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sa 150 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFS 150 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999853 110 00
Q ss_pred --HHHHHH-------HHHHHHHhcCCCCc--------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh---
Q 006610 191 --CDEVES-------LVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR--- 250 (639)
Q Consensus 191 --~~~v~~-------~i~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~--- 250 (639)
-..+.. .+...+.+.|+..+ ..++|++++||++|. |+++|+++|..
T Consensus 151 k~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe--------------GideLl~~l~~l~~ 216 (590)
T TIGR00491 151 KQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE--------------GIPELLTMLAGLAQ 216 (590)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC--------------ChhHHHHHHHHHHH
Confidence 001111 11112333444322 225799999999999 99999998864
Q ss_pred -hCCC-CCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCC------
Q 006610 251 -HVPP-PKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGT------ 322 (639)
Q Consensus 251 -~lP~-p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~------ 322 (639)
+++. -..++++|+++.|..++.+.+.|.++.|.|++|+|++||.|.+.+.++ ....||+.|+...+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~-----~i~~kVr~l~~~~~l~e~r~~ 291 (590)
T TIGR00491 217 QYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDD-----VIVTRVRALLKPRPLEEMRES 291 (590)
T ss_pred HHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCC-----cccEEEEEecCCCcccccccc
Confidence 2332 234567899999999999999999999999999999999999987532 135689999877542
Q ss_pred --ceeeeccCC--CCceEEecCCCCCCcCCeeee
Q 006610 323 --GMVLIDSAG--AGDIISVAGMTKPSIGHTVAN 352 (639)
Q Consensus 323 --~~~~v~~a~--aGdIv~i~gl~~~~~Gdtl~~ 352 (639)
+...+.++. +|--+.+.||+++..|+.+..
T Consensus 292 ~~~~~~~~~~~~~~~~~v~~~~l~~~~aG~~~~~ 325 (590)
T TIGR00491 292 RKKFQKVDEVVAAAGVKIAAPGLDDVMAGSPIRV 325 (590)
T ss_pred ccccCCcceecCCCceeEEecCCCCCCCCCEEEE
Confidence 123455544 444556679988888988743
No 67
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.95 E-value=4.2e-27 Score=231.18 Aligned_cols=190 Identities=61% Similarity=1.006 Sum_probs=160.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC----CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ 134 (639)
++|||+++|++++|||||+++|+...+... ...+++|+.+.|..+|+|+..+...+.+++++++|||||||.+|..
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH
Confidence 379999999999999999999998655311 2357788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+. .++.+++.+++..++...++..+
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP---EEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH---HHHHHHHHHHHHHhCCccccCcc
Confidence 999999999999999999999889998888888888999999999999976444 34556666666666655556678
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
|++++||++|++...+.. ...++.+|++.|.+++|.|
T Consensus 158 ~iv~~Sa~~g~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 158 PVLYASAKNGWASLNLED----PSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred CEEEeehhcccccccccc----chhhHHHHHHHHHhcCCCC
Confidence 999999999987654322 2348999999999999987
No 68
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.4e-28 Score=248.75 Aligned_cols=285 Identities=24% Similarity=0.314 Sum_probs=235.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCC-------------------CCccccccccccccccceeEeeeeEEEeec
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD-------------------IPHERAMDSISLERERGITIASKVTGISWR 117 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------------------~~~~~v~D~~~~e~ergiTi~~~~~~~~~~ 117 (639)
+....|+.++||+++||||+-..++++.|.- -+..|+||++.+|+++|-|+....+.|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3567899999999999999999999887731 123589999999999999999999999999
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCCc-EEEEcCCCCC--CCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLRP-ILLLNKVDRP--AVS 187 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~lp~-IvviNKiD~~--~~~ 187 (639)
..+++|+|+|||..|...+....++||.++||++|..|-. .||+++...++..++.. |+++||||-+ +++
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 9999999999999999999999999999999999987643 59999999999999985 7789999975 567
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEE
Q 006610 188 EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267 (639)
Q Consensus 188 ~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V 267 (639)
.+++++..+++..++..+|+... .+.-++++|+.+|.+..+... ....|.....+|..+.+ +|...++.++||++.|
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~-~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPK-PDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPV 312 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCC-CCceeeecccccccchhhccc-ccCCcccCCccceehhc-cCcccccCCCCEEeeh
Confidence 78999999999998888877542 234578899999876554433 22223334455665544 8888899999999999
Q ss_pred EeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--C
Q 006610 268 TMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--K 343 (639)
Q Consensus 268 ~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~ 343 (639)
.+-+.| .|++.+|+|.||++++||.+.+.+.. ....|.+|+.- -++++.+.|||.+-+ .|++ +
T Consensus 313 ~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk-------~~veV~~I~~d----dvE~~~~~pGenvk~rlkgieeed 379 (501)
T KOG0459|consen 313 ANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNK-------TNVEVLGIYSD----DVETDRVAPGENVKLRLKGIEEED 379 (501)
T ss_pred hhhccc--cceEEEEEecccceecCCeEEEccCC-------cceEEEEEecc----cceeeeccCCcceEEEecccchhh
Confidence 876665 78999999999999999999999753 45678888764 368999999999765 6875 6
Q ss_pred CCcCCeeeecCCCc
Q 006610 344 PSIGHTVANTEVTT 357 (639)
Q Consensus 344 ~~~Gdtl~~~~~~~ 357 (639)
+..|-+||++.++.
T Consensus 380 i~~GfiL~~~~n~~ 393 (501)
T KOG0459|consen 380 ISPGFILCSPNNPC 393 (501)
T ss_pred ccCceEEecCCCcc
Confidence 89999999998764
No 69
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.95 E-value=4e-27 Score=234.06 Aligned_cols=186 Identities=29% Similarity=0.354 Sum_probs=152.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCC-------------------CccccccccccccccceeEeeeeEEEeecCceEE
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRENELN 122 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~ 122 (639)
||+|+||+|||||||+++|++.+|... ...+++|..+.|++||+|++.....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 699999999999999999999988543 1246899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
|||||||.+|..++..+++.+|++|+|+|+.++...++..++..+...+.| +|+|+||+|+...+...+.++.+++..+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998888888876 4668999999766655566677777777
Q ss_pred HHhcCCCCccccccEEecccccCCCCCcccCC-CcccccchHHHHHHHHhhCCCC
Q 006610 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+..++... .|++++||++|.+..+.... +++.+ ..|+++| +.+++|
T Consensus 161 ~~~~~~~~----~~ii~iSA~~g~ni~~~~~~~~w~~g---~~~~~~~-~~~~~~ 207 (208)
T cd04166 161 AAKLGIED----ITFIPISALDGDNVVSRSENMPWYSG---PTLLEHL-ETVPIA 207 (208)
T ss_pred HHHcCCCC----ceEEEEeCCCCCCCccCCCCCCCCCC---CcHHHHH-hcCCCC
Confidence 77777542 57999999999876543322 44444 4455554 334443
No 70
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.95 E-value=4.8e-27 Score=235.35 Aligned_cols=186 Identities=30% Similarity=0.384 Sum_probs=151.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCc-------------------cccccccccccccceeEeeeeEEEeecCceEE
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPH-------------------ERAMDSISLERERGITIASKVTGISWRENELN 122 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-------------------~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~ 122 (639)
||+|+||+|||||||+++|++.+|..... .+++|..+.|++||+|++.....+.|++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 79999999999999999999998853211 14899999999999999999999999999999
Q ss_pred EEeCCCCCCchHHHHHHHhhccEEEEEEeCCC-------CCchhHHHHHHHHHHcCC-CcEEEEcCCCCCCC--CHHHHH
Q 006610 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGE-------GPLAQTKFVLAKALKYGL-RPILLLNKVDRPAV--SEERCD 192 (639)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~-------g~~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~--~~~~~~ 192 (639)
|||||||.+|...+.++++.+|++|+|||+.+ +...++..++..+...+. |+|+|+||+|+..+ +...+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 567899999988888885 57789999999743 345567
Q ss_pred HHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCC-CcccccchHHHHHHHHhhC
Q 006610 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 193 ~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gl~~Lld~I~~~l 252 (639)
++.+++..++..++.... .+|++++||++|.+..+.... ++++ | ..|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~~~--~~~ii~iSA~tg~gi~~~~~~~~w~~--g-~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYNPK--DVPFIPISGLTGDNLIEKSENMPWYK--G-PTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCCcC--CceEEEeecCcCCCCCcCCCCCCCcc--C-CcHHHHHhCCC
Confidence 777788777777765432 478999999999976643221 2332 3 77888875443
No 71
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.94 E-value=6.2e-26 Score=226.32 Aligned_cols=189 Identities=33% Similarity=0.476 Sum_probs=154.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCC-------CccccccccccccccceeEeeeeEEEeec-----CceEEEEeCCC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADI-------PHERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPG 128 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------~~~~v~D~~~~e~ergiTi~~~~~~~~~~-----~~~i~iIDTPG 128 (639)
|||+|+||+|||||||+++|+...+... ...+++|..+.|+++|+|+......+.|. .+.++||||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 7999999999999999999999887533 12457899999999999999988888765 37899999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC--------CHHHHHHHHHHHHH
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV--------SEERCDEVESLVFD 200 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~--------~~~~~~~v~~~i~~ 200 (639)
|.+|...+..+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+... ...++.++.+++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999889988889888889999999999998521 12445566677777
Q ss_pred HHHhcCCCCcccccc----EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 201 LFANLGATDEQLDFP----VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 201 l~~~~g~~~~~~~~P----vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.+..++...+...+| ++++|++.+|+... . ...++.+|++.|++++|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~-~-----~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTL-E-----SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEec-H-----HHHhhhhHHHHHHhhCCCC
Confidence 777766544323355 88999999996421 0 1135679999999999987
No 72
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=3.3e-25 Score=219.47 Aligned_cols=167 Identities=30% Similarity=0.382 Sum_probs=138.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-----------------------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR----------------------- 117 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~----------------------- 117 (639)
+||+++||+|||||||+++|... .+|..+.|.++|+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~---------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV---------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECE 71 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccccccc
Confidence 48999999999999999999543 2578899999999999998888775
Q ss_pred ----C------ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-CchhHHHHHHHHHHcCCC-cEEEEcCCCCCC
Q 006610 118 ----E------NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLR-PILLLNKVDRPA 185 (639)
Q Consensus 118 ----~------~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~ 185 (639)
+ ++++|||||||.+|...+.+++..+|++++|+|+.++ +..++...+..+...+++ +|+|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 72 CPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 3 7899999999999999999999999999999999984 678889898888878874 788999999953
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 186 VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 186 ~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
.....+..+++.+++..... ..+|++++||++|. |+++|++.|.+.+|.|+
T Consensus 152 --~~~~~~~~~~i~~~~~~~~~----~~~~i~~vSA~~g~--------------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 --EEQALENYEQIKKFVKGTIA----ENAPIIPISAQLKY--------------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred --HHHHHHHHHHHHHHHhcccc----CCCcEEEEeCCCCC--------------CHHHHHHHHHHhCCCCC
Confidence 23334444555555543321 13679999999999 99999999999999875
No 73
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.93 E-value=4.7e-25 Score=227.72 Aligned_cols=128 Identities=32% Similarity=0.481 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
||+|+||+|+|||||+++|++..|... ...+++|+.+.+++|++|+......+.|++++++|||||||.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 799999999999999999999877432 23578899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHH
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (639)
+.++++.+|++|+|+|+..+...++..+|+.+...++|.++|+||+|+..++..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 999999999999999999999999999999999999999999999999877653
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=2.2e-24 Score=208.20 Aligned_cols=171 Identities=44% Similarity=0.679 Sum_probs=140.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCC---CCccccccccccccccceeEeeeeEEEee-----cCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGAD---IPHERAMDSISLERERGITIASKVTGISW-----RENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~---~~~~~v~D~~~~e~ergiTi~~~~~~~~~-----~~~~i~iIDTPGh~dF 132 (639)
|||+++|++|+|||||+++|+...+.. .....+.|+.+.++++|+|+......+.| +++.++|||||||.+|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 799999999999999999999986642 12345678888899999999988877766 4678999999999999
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...+.++++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+...+. .+..+++.+ .++...
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~---~~~~~~~~~---~~~~~~--- 151 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP---ERVKQQIED---VLGLDP--- 151 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH---HHHHHHHHH---HhCCCc---
Confidence 99999999999999999999999888888888888788999999999999865433 222233322 223221
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.+++++||++|. |+++|++.|.+.+|.|
T Consensus 152 -~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 -SEAILVSAKTGL--------------GVEDLLEAIVERIPPP 179 (179)
T ss_pred -ccEEEeeccCCC--------------CHHHHHHHHHhhCCCC
Confidence 248999999999 9999999999999877
No 75
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=9.5e-24 Score=247.43 Aligned_cols=261 Identities=23% Similarity=0.263 Sum_probs=198.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc------------------eEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN------------------ELN 122 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~------------------~i~ 122 (639)
.|+..-|-..| ||||+++|.+. ........|||.....+.+.++.. .++
T Consensus 463 ~~~~~~~~~~~-KTtLLD~iR~t------------~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~ 529 (1049)
T PRK14845 463 HNFIANGILVH-NTTLLDKIRKT------------RVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLL 529 (1049)
T ss_pred Ccceeeeeecc-cccHHHHHhCC------------CcccccCCCceeccceEEEEecccccccccccccccccCCcCcEE
Confidence 45554454444 99999999875 234445679999888888776521 289
Q ss_pred EEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC-CCCH-------------
Q 006610 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-AVSE------------- 188 (639)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~-~~~~------------- 188 (639)
|||||||.+|.....+.++.+|++++|+|+.+|+++||.+++..+...++|+|+|+||+|+. +++.
T Consensus 530 fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q 609 (1049)
T PRK14845 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQ 609 (1049)
T ss_pred EEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhh
Confidence 99999999999888888999999999999999999999999999999999999999999985 4431
Q ss_pred --HHHHHHHHHHHHH---HHhcCCCCc--------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC--
Q 006610 189 --ERCDEVESLVFDL---FANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP-- 253 (639)
Q Consensus 189 --~~~~~v~~~i~~l---~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP-- 253 (639)
....++.+++.++ +.+.|+..+ .-.+|++++||++|. |+++|+++|....+
T Consensus 610 ~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe--------------GId~Ll~~l~~l~~~~ 675 (1049)
T PRK14845 610 DQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE--------------GIPELLMMVAGLAQKY 675 (1049)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC--------------CHHHHHHHHHHhhHHh
Confidence 0112222222222 344554332 235799999999999 99999998864432
Q ss_pred ---CCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeee--------CC
Q 006610 254 ---PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK--------GT 322 (639)
Q Consensus 254 ---~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~--------g~ 322 (639)
....++++|+++.|..++.+++.|.++.+.|++|+|++||.|.+.+.++ ....||+.|+... +.
T Consensus 676 l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~-----~i~~kVRaLl~p~pl~e~r~~~~ 750 (1049)
T PRK14845 676 LEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDD-----VIVTKVRALLKPKPLDEIRDPRD 750 (1049)
T ss_pred hhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCC-----cceEEEEEecCcccccccccccc
Confidence 2344567899999999999999999999999999999999999986532 2467899988542 11
Q ss_pred ceeeeccCCCCceEEe--cCCCCCCcCCeeeec
Q 006610 323 GMVLIDSAGAGDIISV--AGMTKPSIGHTVANT 353 (639)
Q Consensus 323 ~~~~v~~a~aGdIv~i--~gl~~~~~Gdtl~~~ 353 (639)
+...++++.|..-|-| .|++++..||.+...
T Consensus 751 ~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 751 KFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred cccccccccCCCceEEecCCccccCCCCeEEEe
Confidence 3457788888777766 499998889987554
No 76
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=5.4e-24 Score=208.75 Aligned_cols=171 Identities=26% Similarity=0.297 Sum_probs=139.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--------------CceEEEEeC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--------------ENELNMVDT 126 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--------------~~~i~iIDT 126 (639)
.||+++||+|+|||||+++|+...+ ...+|....|+++|+|+......+.+. ++.++||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~-----~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt 75 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS-----TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDC 75 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc-----hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEEC
Confidence 3899999999999999999997522 234678888999999999988888776 789999999
Q ss_pred CCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHH----HH
Q 006610 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFD----LF 202 (639)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~----l~ 202 (639)
|||.+|.....++...+|++++|+|+.++...++.+.+..+...+.|+++|+||+|+.... ......+++.+ .+
T Consensus 76 pG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~ 153 (192)
T cd01889 76 PGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEE--ERERKIEKMKKKLQKTL 153 (192)
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHH--HHHHHHHHHHHHHHHHH
Confidence 9999998888888899999999999999998898887777777899999999999985322 22223333333 23
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
...+. ..+|++++||++|. |+++|+++|.+.+|.|.
T Consensus 154 ~~~~~----~~~~vi~iSa~~g~--------------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 154 EKTRF----KNSPIIPVSAKPGG--------------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HhcCc----CCCCEEEEeccCCC--------------CHHHHHHHHHhcccccc
Confidence 22222 13689999999999 99999999999999885
No 77
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.90 E-value=4.9e-23 Score=206.54 Aligned_cols=177 Identities=21% Similarity=0.188 Sum_probs=139.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCC--ccccccccccccccceeEeeee------------------------EEEe
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIP--HERAMDSISLERERGITIASKV------------------------TGIS 115 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~--~~~v~D~~~~e~ergiTi~~~~------------------------~~~~ 115 (639)
+|+++||.++|||||+++|......... ....+|....|.++|+|+.... ..++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4899999999999999999975432221 2345788889999999874333 1233
Q ss_pred ecCceEEEEeCCCCCCchHHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHH
Q 006610 116 WRENELNMVDTPGHADFGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDE 193 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~ 193 (639)
..++.++|+|||||.+|...+.+++. .+|++++|||+.+|+..++++++..+...++|+++|+||+|+. +..++.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~--~~~~~~~ 158 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA--PANILQE 158 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc--CHHHHHH
Confidence 45789999999999999999999886 7999999999999999999999999999999999999999984 4555666
Q ss_pred HHHHHHHHHHhcCCCC-------------------ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 194 VESLVFDLFANLGATD-------------------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 194 v~~~i~~l~~~~g~~~-------------------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+++.+.+...|... ....+|++++||.+|. |++.|...| ..+|+
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~--------------Gi~~L~~~L-~~lp~ 223 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE--------------GLDLLHAFL-NLLPL 223 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc--------------CHHHHHHHH-HhcCC
Confidence 7777777665433221 1123599999999999 999888765 67776
Q ss_pred C
Q 006610 255 P 255 (639)
Q Consensus 255 p 255 (639)
|
T Consensus 224 ~ 224 (224)
T cd04165 224 R 224 (224)
T ss_pred C
Confidence 4
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=5.8e-22 Score=192.20 Aligned_cols=178 Identities=44% Similarity=0.655 Sum_probs=146.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCC----ccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIP----HERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~----~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
||+|+|.+|+|||||+++|+...+.... ....++....+..+++|+......+.+.+..++||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999998764332 234566777788899999988888888999999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-------Cc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-------DE 210 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~-------~~ 210 (639)
.+++.+|++++|+|+.++...+....+..+...+.|+++|+||+|+.. ........+++.+.+...+.. ..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG--EEDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc--hhcHHHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999999988888999888888999999999999964 233344555555555544421 01
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
....|++++||++|+ |++++++.+.+.+|.|
T Consensus 159 ~~~~~v~~~Sa~~g~--------------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTGI--------------GVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccCc--------------CHHHHHHHHHhhCCCC
Confidence 134789999999999 9999999999999865
No 79
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=2.1e-21 Score=183.81 Aligned_cols=160 Identities=29% Similarity=0.387 Sum_probs=126.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCCchHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
+|+++|++|+|||||+++|+... .+....+..+++|+......+.+. +..+++|||||+.+|...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhh
Confidence 79999999999999999998541 123344556788888887777776 88999999999999998888899
Q ss_pred hhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-CcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEec
Q 006610 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~ 219 (639)
+.+|++++|+|+.++...++...+..+...+. |+++|+||+|+... .......+++.+.+...+.. .+|++++
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 146 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE--DWLELVEEEIRELLAGTFLA----DAPIFPV 146 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH--HHHHHHHHHHHHHHHhcCcC----CCcEEEE
Confidence 99999999999999888888888777777777 88999999998542 22233445555555443221 3679999
Q ss_pred ccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
||++|. |++++++.+..
T Consensus 147 Sa~~~~--------------~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGE--------------GIEELKEYLDE 163 (164)
T ss_pred eCCCCc--------------CHHHHHHHHhh
Confidence 999998 99999998753
No 80
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=196.02 Aligned_cols=216 Identities=25% Similarity=0.321 Sum_probs=161.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------- 133 (639)
+.|||+|.+|+|||||+|+|+++. ..-.+...|+|.+..+...+|.++.+.+|||+|..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-----------~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~ 72 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-----------IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQEL 72 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-----------eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHH
Confidence 579999999999999999999872 22234557999999999999999999999999987432
Q ss_pred --HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 134 --GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 134 --~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
.+++.++..||.+|||||+.+|+++++..+.+.++..+.|+|+|+||+|..... +....|..+|+.+
T Consensus 73 i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e---------~~~~efyslG~g~-- 141 (444)
T COG1160 73 IREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE---------ELAYEFYSLGFGE-- 141 (444)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh---------hhHHHHHhcCCCC--
Confidence 456789999999999999999999999999999998889999999999975211 1112356678765
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceE-EEEEEEeeeee
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRI-LTGRVSSGVVS 290 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i-~~grV~sG~l~ 290 (639)
++++||.+|. |+.+|+|++++.+| +....+..-. ++ ..++ .+||..-|+-.
T Consensus 142 ----~~~ISA~Hg~--------------Gi~dLld~v~~~l~-~~e~~~~~~~--------~~-~ikiaiiGrPNvGKSs 193 (444)
T COG1160 142 ----PVPISAEHGR--------------GIGDLLDAVLELLP-PDEEEEEEEE--------TD-PIKIAIIGRPNVGKSS 193 (444)
T ss_pred ----ceEeehhhcc--------------CHHHHHHHHHhhcC-Cccccccccc--------CC-ceEEEEEeCCCCCchH
Confidence 8899999999 99999999999997 4332111100 11 1232 44666666654
Q ss_pred cC------CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCC
Q 006610 291 VG------DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAG 331 (639)
Q Consensus 291 ~g------d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~ 331 (639)
.. +++.+.+.. | ....-|..-+.+.|.+..-++.|+
T Consensus 194 LiN~ilgeeR~Iv~~~a--G---TTRD~I~~~~e~~~~~~~liDTAG 235 (444)
T COG1160 194 LINAILGEERVIVSDIA--G---TTRDSIDIEFERDGRKYVLIDTAG 235 (444)
T ss_pred HHHHhccCceEEecCCC--C---ccccceeeeEEECCeEEEEEECCC
Confidence 33 233333221 2 245567777888888888888765
No 81
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=4e-20 Score=176.06 Aligned_cols=162 Identities=31% Similarity=0.407 Sum_probs=123.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---CceEEEEeCCCCCCchHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~---~~~i~iIDTPGh~dF~~ev~ 137 (639)
+.|+|+|+.|+|||||+++|+.... .....+++|.......+.++ +..++||||||+.+|...+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV------------AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc------------ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHH
Confidence 3699999999999999999987522 11233466666665666664 78999999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+...+ .+.+.++... ........+|++
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~ 144 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERV---KNELSELGLQ-GEDEWGGDVQIV 144 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHH---HHHHHHhhcc-ccccccCcCcEE
Confidence 899999999999999998888998888888889999999999999865443322 2222222111 000011246899
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++||++|. |+++|+++|.++.
T Consensus 145 ~~Sa~~~~--------------gi~~l~~~l~~~~ 165 (168)
T cd01887 145 PTSAKTGE--------------GIDDLLEAILLLA 165 (168)
T ss_pred EeecccCC--------------CHHHHHHHHHHhh
Confidence 99999999 9999999998653
No 82
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=3.1e-19 Score=170.05 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
||+++|+.|+|||||+++|+........ . ...+...|+......+.+++..+++||||||.+|...+..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~------~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG------L--PPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC------C--cccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhC
Confidence 6899999999999999999875321000 0 0112233444455667788899999999999999999999999
Q ss_pred hccEEEEEEeCCCCC-chhHHHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGP-LAQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|+.+.- ......++..+. ..++|+++++||+|+..... ..+ +.+++...........+++
T Consensus 73 ~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS--VEE----IKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred CCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC--HHH----HHHHhccccccccCCceEE
Confidence 999999999987642 222333444333 24799999999999865322 122 2222222111111224689
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++||++|. |+++++++|.+
T Consensus 147 ~~~Sa~~g~--------------gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGT--------------GVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCc--------------CHHHHHHHHhc
Confidence 999999999 99999999864
No 83
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=5.6e-19 Score=165.75 Aligned_cols=149 Identities=27% Similarity=0.337 Sum_probs=115.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH--------H
Q 006610 64 AVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG--------E 135 (639)
Q Consensus 64 aIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~--------e 135 (639)
+++|++|+|||||+++|+.... ...+...++|.......+.++++.+++|||||+.++.. +
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 69 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-----------AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQ 69 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-----------EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHH
Confidence 5899999999999999986521 11223346666666777778889999999999998644 5
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+...++.+|++++|+|+.++.......+++.+...+.|+++|+||+|+...+.. ...+..++.. +
T Consensus 70 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---------~~~~~~~~~~------~ 134 (157)
T cd01894 70 AELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---------AAEFYSLGFG------E 134 (157)
T ss_pred HHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---------HHHHHhcCCC------C
Confidence 567789999999999999888777788888888889999999999999653321 1222333321 4
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++|+++|. |+++++++|++++
T Consensus 135 ~~~~Sa~~~~--------------gv~~l~~~l~~~~ 157 (157)
T cd01894 135 PIPISAEHGR--------------GIGDLLDAILELL 157 (157)
T ss_pred eEEEecccCC--------------CHHHHHHHHHhhC
Confidence 8999999998 9999999998764
No 84
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=7.5e-19 Score=193.61 Aligned_cols=162 Identities=24% Similarity=0.274 Sum_probs=127.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---- 134 (639)
...+|+++|++++|||||+++|++.. ........|+|.+.....+.+++..+.||||||+.++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~-----------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~ 239 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEE-----------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEG 239 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC-----------eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhh
Confidence 45789999999999999999999762 222334568888888888888889999999999866432
Q ss_pred -------HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 135 -------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 135 -------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
...++++.+|++|+|+|+.++...++..++..+.+.+.|+|+|+||+|+.. +.....++.+++.+.+..++
T Consensus 240 ~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~- 317 (429)
T TIGR03594 240 VEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLD- 317 (429)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCC-
Confidence 234578899999999999999999999999999999999999999999962 34444455555544433322
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+|++++||++|+ |++++++++.+..
T Consensus 318 -----~~~vi~~SA~~g~--------------~v~~l~~~i~~~~ 343 (429)
T TIGR03594 318 -----FAPIVFISALTGQ--------------GVDKLLDAIDEVY 343 (429)
T ss_pred -----CCceEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 2689999999999 8888888887643
No 85
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.3e-19 Score=195.47 Aligned_cols=218 Identities=24% Similarity=0.213 Sum_probs=161.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec------------------Cce
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------ENE 120 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~------------------~~~ 120 (639)
+.+-++|+||+|.|||-|++.+-.. ........|||-....+.|... ---
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~t------------NVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg 541 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGT------------NVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG 541 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcc------------ccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe
Confidence 4567999999999999999998764 1122223466655544444322 225
Q ss_pred EEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC-C------CHHH---
Q 006610 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA-V------SEER--- 190 (639)
Q Consensus 121 i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~-~------~~~~--- 190 (639)
+.+||||||..|.....|..+.||.+|||||..+|+.+||.+-+..++..+.|+||++||+||.- | +...
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999852 1 1100
Q ss_pred ---------HHHHHHHHHHHHHhcCCCCc--------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 191 ---------CDEVESLVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 191 ---------~~~v~~~i~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+..-.+.+..-|.+.|.+.. .--+.++++||..|. |+.+|+-+|++...
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe--------------GipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE--------------GIPDLLLLLVQLTQ 687 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC--------------CcHHHHHHHHHHHH
Confidence 11111122222333333221 113678999999999 99999999987543
Q ss_pred CCC---CCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccC
Q 006610 254 PPK---ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITD 302 (639)
Q Consensus 254 ~p~---~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~ 302 (639)
.-- -.--..+++.|..+-..++.|.-.-.-+..|.|+.||+|.+++.++
T Consensus 688 k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~G 739 (1064)
T KOG1144|consen 688 KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQG 739 (1064)
T ss_pred HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCC
Confidence 211 1123567889999999999999888889999999999999997653
No 86
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.7e-18 Score=191.21 Aligned_cols=159 Identities=25% Similarity=0.305 Sum_probs=126.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG----- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~----- 133 (639)
...+|+|+|++|+|||||+++|++.. .......+|+|.++....+.+++..++||||||+.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~-----------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~ 240 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEE-----------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEG 240 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-----------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhH
Confidence 46799999999999999999999762 22334456889888888888899999999999975422
Q ss_pred ------HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 134 ------GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 134 ------~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
....++++.+|++|+|+|+.++...|+..++..+.+.+.|+|+|+||+|+. +.....++.+++...+....
T Consensus 241 ~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~--~~~~~~~~~~~~~~~l~~~~- 317 (435)
T PRK00093 241 VEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV--DEKTMEEFKKELRRRLPFLD- 317 (435)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC--CHHHHHHHHHHHHHhccccc-
Confidence 223467889999999999999999999999999999999999999999985 33334445555544433222
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
.+|++++||++|+ |++++++.+.+
T Consensus 318 -----~~~i~~~SA~~~~--------------gv~~l~~~i~~ 341 (435)
T PRK00093 318 -----YAPIVFISALTGQ--------------GVDKLLEAIDE 341 (435)
T ss_pred -----CCCEEEEeCCCCC--------------CHHHHHHHHHH
Confidence 3689999999999 88888887765
No 87
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=2.7e-18 Score=163.39 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=119.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------ 133 (639)
.++|+++|++|+|||||+++|++... ......++.+.......+.+++..+++|||||+.++.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~ 70 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER-----------VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGI 70 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc-----------eeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccH
Confidence 46899999999999999999987532 1122234566666556677778889999999986541
Q ss_pred -----HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 134 -----GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 134 -----~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+...+......+.+.+.+.+...+
T Consensus 71 e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-- 148 (174)
T cd01895 71 EKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD-- 148 (174)
T ss_pred HHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc--
Confidence 1223466789999999999998888888888888888999999999999865432333334444433322111
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
..|++++||+++. |++++++++.+.
T Consensus 149 ----~~~~~~~Sa~~~~--------------~i~~~~~~l~~~ 173 (174)
T cd01895 149 ----YAPIVFISALTGQ--------------GVDKLFDAIDEV 173 (174)
T ss_pred ----CCceEEEeccCCC--------------CHHHHHHHHHHh
Confidence 2579999999998 999999988653
No 88
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=183.89 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=135.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
...+|||+|.+++|||||+|+|+++ +..-.....|+|.++-...++|++.++.+|||.|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-----------eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~ 245 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-----------ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES 245 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-----------ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccc
Confidence 4678999999999999999999988 3444556679999999999999999999999999532
Q ss_pred ---ch-HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 132 ---FG-GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 132 ---F~-~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
|. ..+..++..+|.++||+||.+|+..|...+..++.+.|.++++|+||+|+...+....++..+++...|..+++
T Consensus 246 ~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 246 VEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred eEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 32 45667889999999999999999999999999999999999999999998665545556677777776666655
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
.|++++||++|. ++..|++++..
T Consensus 326 ------a~i~~iSA~~~~--------------~i~~l~~~i~~ 348 (444)
T COG1160 326 ------APIVFISALTGQ--------------GLDKLFEAIKE 348 (444)
T ss_pred ------CeEEEEEecCCC--------------ChHHHHHHHHH
Confidence 479999999999 77777777654
No 89
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.79 E-value=6.3e-19 Score=165.55 Aligned_cols=147 Identities=25% Similarity=0.364 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch------HH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------GE 135 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------~e 135 (639)
+||++|.+|+|||||+|+|++. +......+|.|+......+.+.+..+.|+|+||.-++. ..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~------------~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v 69 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGA------------KQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERV 69 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT------------SEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHH
Confidence 6999999999999999999987 34455668999999999999999999999999954432 12
Q ss_pred HHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 136 VERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 136 v~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+..++ ...|++|+|+||+. ..+..+++.++.++++|+++++||+|.....- +.-....+-+.+ .
T Consensus 70 ~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g-----~~id~~~Ls~~L-------g 135 (156)
T PF02421_consen 70 ARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKG-----IEIDAEKLSERL-------G 135 (156)
T ss_dssp HHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTT-----EEE-HHHHHHHH-------T
T ss_pred HHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcC-----CEECHHHHHHHh-------C
Confidence 23344 47899999999986 46667888899999999999999999732110 000111222223 3
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
+|++++||+++. |+++|+++|
T Consensus 136 ~pvi~~sa~~~~--------------g~~~L~~~I 156 (156)
T PF02421_consen 136 VPVIPVSARTGE--------------GIDELKDAI 156 (156)
T ss_dssp S-EEEEBTTTTB--------------THHHHHHHH
T ss_pred CCEEEEEeCCCc--------------CHHHHHhhC
Confidence 689999999999 999999876
No 90
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.7e-19 Score=177.08 Aligned_cols=249 Identities=23% Similarity=0.309 Sum_probs=187.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-c------------------
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-R------------------ 117 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~------------------ 117 (639)
++...||+-+||+-|||||++.++.+- .++ ....|-||.|||...++.... +
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv-------~Tv--rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~ 105 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGV-------HTV--RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSS 105 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccc-------eEE--EehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCC
Confidence 344689999999999999999998643 112 445677888998766654321 0
Q ss_pred ------------------CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-CchhHHHHHHHHHHcCCCcE-EE
Q 006610 118 ------------------ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLRPI-LL 177 (639)
Q Consensus 118 ------------------~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-~~~qt~~~l~~~~~~~lp~I-vv 177 (639)
-+.+.|+|+|||.-+...+.......|+++|+|.+.+. +++||.+++....-+.++.| ++
T Consensus 106 k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiiil 185 (466)
T KOG0466|consen 106 KEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIIL 185 (466)
T ss_pred CCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEE
Confidence 13688999999988888888888889999999999876 78999999999998999864 56
Q ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC
Q 006610 178 LNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (639)
Q Consensus 178 iNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~ 257 (639)
-||+|+.. .....+-.+++..++....+. ..|++++||.-++ +++-+.+.|++.+|-|.+
T Consensus 186 QNKiDli~--e~~A~eq~e~I~kFi~~t~ae----~aPiiPisAQlky--------------NId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 186 QNKIDLIK--ESQALEQHEQIQKFIQGTVAE----GAPIIPISAQLKY--------------NIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred echhhhhh--HHHHHHHHHHHHHHHhccccC----CCceeeehhhhcc--------------ChHHHHHHHHhcCCCCcc
Confidence 79999954 333344455666665544333 2589999999998 999999999999999999
Q ss_pred CCCCCceeEEEeeee--------ecccceEEEEEEEeeeeecCCEEEEeeccCCCC-ceeEE-----eEEEEEEeeeCCc
Q 006610 258 SLDAPFQMLVTMMEK--------DFYLGRILTGRVSSGVVSVGDKVHGLRITDSGT-EKIEE-----GKVTKLMKKKGTG 323 (639)
Q Consensus 258 ~~~~p~~~~V~~~~~--------d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~-~~~~~-----~kV~~l~~~~g~~ 323 (639)
|-..|.++.|...+. ++..|-++-|.+..|.|+.||.|.+.+.--+.. +.... .+|.+||. +
T Consensus 246 df~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~A----E 321 (466)
T KOG0466|consen 246 DFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFA----E 321 (466)
T ss_pred ccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHh----h
Confidence 999999998876553 445788999999999999999999875321000 00011 23444442 4
Q ss_pred eeeeccCCCCceEEe
Q 006610 324 MVLIDSAGAGDIISV 338 (639)
Q Consensus 324 ~~~v~~a~aGdIv~i 338 (639)
+.+.+.|.+|-.+++
T Consensus 322 ~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 322 QNDLQFAVPGGLIGV 336 (466)
T ss_pred hccceeecCCceeee
Confidence 557889999998887
No 91
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=4.9e-18 Score=175.58 Aligned_cols=157 Identities=24% Similarity=0.199 Sum_probs=111.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc--------h
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF--------G 133 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF--------~ 133 (639)
.|+++|++|+|||||+|+|++.... ......++|..........++.++.||||||+.+. .
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~-----------~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~ 70 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS-----------ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMM 70 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe-----------ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHH
Confidence 5899999999999999999976221 11222344443333333445678999999997542 2
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
..+..++..+|++++|+|++++...+ ..++..+...+.|+++|+||+|+. +... ..+.+.++....++
T Consensus 71 ~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~--~~~~---~~~~~~~~~~~~~~------ 138 (270)
T TIGR00436 71 KEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK--FKDK---LLPLIDKYAILEDF------ 138 (270)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC--CHHH---HHHHHHHHHhhcCC------
Confidence 23566788999999999998876554 667777778899999999999985 3322 22233333222222
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.+++++||++|. |+++|+++|.+++|+.
T Consensus 139 ~~v~~iSA~~g~--------------gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 139 KDIVPISALTGD--------------NTSFLAAFIEVHLPEG 166 (270)
T ss_pred CceEEEecCCCC--------------CHHHHHHHHHHhCCCC
Confidence 169999999999 9999999999999764
No 92
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=4.6e-18 Score=162.00 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=110.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev 136 (639)
..++|+++|+.|+|||||+++|+..... .+....+.+......+.+++ ..++||||||+.+|...+
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFS------------ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCc------------ccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 3589999999999999999999764211 11111222233334445554 578999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...++.+|++++|+|+.+....+.. .++..+.. .++|+|+|+||+|+...+... .++...+....+.
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~----- 140 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL----FEEACTLAEKNGM----- 140 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC----HHHHHHHHHHcCC-----
Confidence 9999999999999999886544443 34444433 368899999999986433211 1222233333332
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+++++||++|. |++++++.+.+.+
T Consensus 141 -~~~~e~Sa~~~~--------------~v~~~~~~l~~~l 165 (165)
T cd01864 141 -LAVLETSAKESQ--------------NVEEAFLLMATEL 165 (165)
T ss_pred -cEEEEEECCCCC--------------CHHHHHHHHHHhC
Confidence 358999999998 9999999998753
No 93
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=5.7e-18 Score=180.31 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=118.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-----
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF----- 132 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF----- 132 (639)
.+..+|+++|++|+|||||+++|++.... ......+.|.......+.+++.+++||||||+.+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-----------ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~ 118 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-----------IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLE 118 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-----------eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHH
Confidence 34569999999999999999999865221 11223355555455566778899999999998542
Q ss_pred ---hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 133 ---GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 133 ---~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
......++..||++|+|+|+.++....+..++..+...+.|+|+|+||+|+.... .. ++.+.+.....
T Consensus 119 ~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~---~~----~~~~~l~~~~~-- 189 (339)
T PRK15494 119 KAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY---LN----DIKAFLTENHP-- 189 (339)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc---HH----HHHHHHHhcCC--
Confidence 1223345789999999999998888777788888888889999999999985421 12 22233322211
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+++++||++|. |+++|+++|.+++|.
T Consensus 190 ---~~~i~~iSAktg~--------------gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 190 ---DSLLFPISALSGK--------------NIDGLLEYITSKAKI 217 (339)
T ss_pred ---CcEEEEEeccCcc--------------CHHHHHHHHHHhCCC
Confidence 1359999999998 999999999999875
No 94
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=175.33 Aligned_cols=270 Identities=18% Similarity=0.224 Sum_probs=193.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCcc--ccccccccccccceeEeee-------------------eEEEeec--
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHE--RAMDSISLERERGITIASK-------------------VTGISWR-- 117 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~--~v~D~~~~e~ergiTi~~~-------------------~~~~~~~-- 117 (639)
.+||++|.+|+|||||+..|....-...+.. .-+-....|.|.|.|-... ...++|-
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 4799999999999999998876432111110 0111222333333332211 1123331
Q ss_pred ----CceEEEEeCCCCCCchHHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHH
Q 006610 118 ----ENELNMVDTPGHADFGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERC 191 (639)
Q Consensus 118 ----~~~i~iIDTPGh~dF~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~ 191 (639)
-.-|+|||..||+.|...+.-.+ .+-|...|+|-|..|+-..|++++..+..+.+|+++|++|+|...+ ..+
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA--NiL 291 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA--NIL 291 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH--HHH
Confidence 24689999999999876554444 3569999999999999999999999999999999999999999554 344
Q ss_pred HHHHHHHHHHHHhcCCCCc-------------------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 192 DEVESLVFDLFANLGATDE-------------------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 192 ~~v~~~i~~l~~~~g~~~~-------------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++..+-+..+++.-|+..- ..-+|++.+|..+|. +++ ||.+.++.+
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~--------------NL~-LLkmFLNll 356 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT--------------NLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC--------------ChH-HHHHHHhhc
Confidence 5555556666655443211 113789999998887 554 777777777
Q ss_pred CCC-CCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCC
Q 006610 253 PPP-KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAG 331 (639)
Q Consensus 253 P~p-~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~ 331 (639)
+.. ...++.|..++|.+++..+++|+++.|...+|+++.+|.+.+.+... | .+-...|++|.+ ++.+|..+.
T Consensus 357 s~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~-G--~F~pI~iKSIHR----KRMpV~~Vr 429 (641)
T KOG0463|consen 357 SLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSN-G--DFMPIPIKSIHR----KRMPVGIVR 429 (641)
T ss_pred CcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCC-C--Ceeeeehhhhhh----ccccceEEe
Confidence 643 34567899999999999999999999999999999999999876532 2 355666777653 567999999
Q ss_pred CCceEEe--cCCC--CCCcCCeeeecC
Q 006610 332 AGDIISV--AGMT--KPSIGHTVANTE 354 (639)
Q Consensus 332 aGdIv~i--~gl~--~~~~Gdtl~~~~ 354 (639)
+|+...+ .+++ +++.|.++.++.
T Consensus 430 cGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 430 CGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ccchhhhHhhhcchhhhhcceEEecCC
Confidence 9998644 5664 678899888765
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=6.3e-18 Score=186.29 Aligned_cols=154 Identities=27% Similarity=0.380 Sum_probs=125.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC--------ch
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--------FG 133 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d--------F~ 133 (639)
+|+|+|++|+|||||+++|++... ...+...|+|.+.....+.|.+..++||||||+.. +.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-----------~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~ 69 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-----------AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIR 69 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-----------ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHH
Confidence 489999999999999999987521 12233468888888888999999999999999743 44
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
..+..+++.+|++|+|+|+.++.......+++.+++.+.|+++|+||+|....+.. .. + +..+++.
T Consensus 70 ~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~-----~~---~-~~~lg~~----- 135 (429)
T TIGR03594 70 EQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV-----AA---E-FYSLGFG----- 135 (429)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc-----HH---H-HHhcCCC-----
Confidence 56777889999999999999999999999999999999999999999998643221 11 1 2344442
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+++++||++|. |+.+|++++.+.+|..
T Consensus 136 -~~~~vSa~~g~--------------gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 136 -EPIPISAEHGR--------------GIGDLLDAILELLPEE 162 (429)
T ss_pred -CeEEEeCCcCC--------------ChHHHHHHHHHhcCcc
Confidence 48999999998 9999999999999764
No 96
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=8e-18 Score=160.05 Aligned_cols=154 Identities=19% Similarity=0.249 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.|+|||||+++++....... .....+.++......+..+...++||||||+..|...+..+++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ----------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhC
Confidence 799999999999999999987532111 0111233343333444445678999999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhH-HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEe
Q 006610 142 MVEGAILVVDAGEGPLAQT-KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt-~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~ 218 (639)
.+|++|+|+|+.+....+. ..++..+.+. ++|+++|+||+|+... ..++..++.... .+|+++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~-------~~~~~~ 137 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-------VTQKKFNFAEKH-------NLPLYY 137 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-------HHHHHHHHHHHc-------CCeEEE
Confidence 9999999999987655444 3455555544 7899999999998421 111222222222 257999
Q ss_pred cccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+||++|. |++++++.+.+.+.
T Consensus 138 ~Sa~~~~--------------gv~~l~~~l~~~~~ 158 (161)
T cd04124 138 VSAADGT--------------NVVKLFQDAIKLAV 158 (161)
T ss_pred EeCCCCC--------------CHHHHHHHHHHHHH
Confidence 9999999 99999999987654
No 97
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=9e-18 Score=169.50 Aligned_cols=161 Identities=25% Similarity=0.232 Sum_probs=119.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC--------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-------- 131 (639)
.--|||+|.+|+|||||+|+|+++.- .-......+|...-..-+..++.++.|+||||.-.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~Ki-----------sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~ 74 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKI-----------SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGEL 74 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCce-----------EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHH
Confidence 34699999999999999999998732 11222233443333344455789999999999432
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
....+..++..+|.+++|||+.++..+..+.++..+...+.|+|+++||+|+...+. .+....+ .+.....+.
T Consensus 75 m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~-~l~~~~~---~~~~~~~f~--- 147 (298)
T COG1159 75 MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKT-VLLKLIA---FLKKLLPFK--- 147 (298)
T ss_pred HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHH-HHHHHHH---HHHhhCCcc---
Confidence 345677889999999999999999999999999999887889999999999854322 1122222 122222332
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.++++||++|. |++.|++.+..++|.-
T Consensus 148 ---~ivpiSA~~g~--------------n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 148 ---EIVPISALKGD--------------NVDTLLEIIKEYLPEG 174 (298)
T ss_pred ---eEEEeeccccC--------------CHHHHHHHHHHhCCCC
Confidence 39999999998 9999999999999853
No 98
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=1.4e-17 Score=158.98 Aligned_cols=153 Identities=20% Similarity=0.240 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc-eEEEEeCCCCCC-------ch
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHAD-------FG 133 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~-~i~iIDTPGh~d-------F~ 133 (639)
||+|+|++|+|||||+++|.+... ......+.|+......+.+++. +++||||||+.+ +.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~------------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 69 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP------------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG 69 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc------------cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCch
Confidence 799999999999999999985421 1112224455555555666776 999999999742 33
Q ss_pred HHHHHHHhhccEEEEEEeCCCC-Cchh-HHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 134 GEVERVVGMVEGAILVVDAGEG-PLAQ-TKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g-~~~q-t~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
..+.+.+..+|++++|+|+.+. -..+ ...+.+.+.+ .+.|+++|+||+|+..... ..+.+.+++...
T Consensus 70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~~~~~~- 143 (170)
T cd01898 70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----LFELLKELLKEL- 143 (170)
T ss_pred HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-----hHHHHHHHHhhC-
Confidence 4455566779999999999876 2222 2334444433 3689999999999854322 112222232221
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
...+++++||+++. |+++++++|.+.
T Consensus 144 -----~~~~~~~~Sa~~~~--------------gi~~l~~~i~~~ 169 (170)
T cd01898 144 -----WGKPVFPISALTGE--------------GLDELLRKLAEL 169 (170)
T ss_pred -----CCCCEEEEecCCCC--------------CHHHHHHHHHhh
Confidence 12579999999998 999999998764
No 99
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.8e-17 Score=184.45 Aligned_cols=156 Identities=28% Similarity=0.360 Sum_probs=123.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
..++|+|+|.+|+|||||+++|++... ...+...|+|.+.....+.|.+..++||||||+..
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-----------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~ 105 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-----------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQA 105 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-----------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHH
Confidence 457899999999999999999986521 12234568888877788889999999999999863
Q ss_pred -chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 132 -FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 132 -F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
|...+..+++.||++|+|+|+.++.......++..+...+.|+|+|+||+|+...... ..+ +..+++..
T Consensus 106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--------~~~-~~~~g~~~- 175 (472)
T PRK03003 106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--------AAA-LWSLGLGE- 175 (472)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--------hHH-HHhcCCCC-
Confidence 4445667889999999999999998877788888888889999999999998643211 111 12334322
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.+++||++|. |+++|+++|++.++.
T Consensus 176 -----~~~iSA~~g~--------------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 176 -----PHPVSALHGR--------------GVGDLLDAVLAALPE 200 (472)
T ss_pred -----eEEEEcCCCC--------------CcHHHHHHHHhhccc
Confidence 4689999999 999999999999876
No 100
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.5e-17 Score=169.57 Aligned_cols=283 Identities=20% Similarity=0.225 Sum_probs=205.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCc-cc-cccccccccccceeEeeeeEEEe---------e------------c
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPH-ER-AMDSISLERERGITIASKVTGIS---------W------------R 117 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-~~-v~D~~~~e~ergiTi~~~~~~~~---------~------------~ 117 (639)
.++|++|..|+|||||+..|....-..... .+ -+-..+.|...|.|-..++-.+. | .
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 579999999999999999998654321111 11 11133344444444332222221 2 1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHH
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~ 195 (639)
...++|||..||..|...+..+|.. -|.++|||+|..|+...|++++..+..+++|++++++|+|+ .++..++...
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl--~~~~~~~~tv 325 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDL--VDRQGLKKTV 325 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecc--ccchhHHHHH
Confidence 3579999999999998777777765 48899999999999999999999999999999999999999 4555667777
Q ss_pred HHHHHHHHhcCCCCcc-------------------ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 196 SLVFDLFANLGATDEQ-------------------LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 196 ~~i~~l~~~~g~~~~~-------------------~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
+++.+++...|..... --+|++.+|..+|. |++ |+..++..+|+..
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe--------------gl~-ll~~fLn~Lsp~~ 390 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE--------------GLR-LLRTFLNCLSPAG 390 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc--------------chh-HHHHHHhhcCCcC
Confidence 8888888766653211 12799999999998 665 5555666666442
Q ss_pred CC------CCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccC
Q 006610 257 AS------LDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSA 330 (639)
Q Consensus 257 ~~------~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a 330 (639)
.. ...|..++|..++..+.+|.++-|.+.+|.++.|+.+.+.+..+. .+.+.+|.+|.+ ++.++..+
T Consensus 391 ~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG---~F~~itV~sI~R----nr~acrvv 463 (591)
T KOG1143|consen 391 TAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDG---TFEKITVGSIRR----NRQACRVV 463 (591)
T ss_pred ChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCC---ceeEEEeeeeec----cccceeee
Confidence 21 246788999999999999999999999999999999999987653 567788888875 35678888
Q ss_pred CCCceEEec-CCC---CCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecC
Q 006610 331 GAGDIISVA-GMT---KPSIGHTVANTEVTTALPTIELDPPTISMTFGVND 377 (639)
Q Consensus 331 ~aGdIv~i~-gl~---~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~ 377 (639)
.||+-..++ +.. .++.|.++...+.. |.+...|.++-
T Consensus 464 raGqaAslsl~d~D~~~LR~GMVl~~~~~n----------P~~c~~F~A~~ 504 (591)
T KOG1143|consen 464 RAGQAASLSLNDPDGVSLRRGMVLAEIDHN----------PPVCYEFTANL 504 (591)
T ss_pred cCccceeeeccCCCccchhcceEEeecCCC----------CceEEEEeeee
Confidence 999987764 221 35678887765432 44555566554
No 101
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=2.8e-17 Score=155.83 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|.+|+|||||+++++..........+. +.. ......+.....++++|||||+.+|......++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~----------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI----------EDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc----------cce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHH
Confidence 589999999999999999999764322111111 000 111122333346799999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|+.+....+. ..++..... .++|+++|+||+|+....... .++...+.... .+|
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~----~~~~~~~~~~~-------~~~ 140 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS----REEGQELARKL-------KIP 140 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec----HHHHHHHHHHc-------CCc
Confidence 99999999999987543222 223333332 478999999999986432211 11222333332 247
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |++++|+.|++.+
T Consensus 141 ~~~~Sa~~~~--------------~i~~l~~~l~~~~ 163 (164)
T cd04145 141 YIETSAKDRL--------------NVDKAFHDLVRVI 163 (164)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHhh
Confidence 9999999998 9999999998764
No 102
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=8.8e-18 Score=158.11 Aligned_cols=148 Identities=24% Similarity=0.314 Sum_probs=109.2
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH------HHH
Q 006610 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE------VER 138 (639)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e------v~~ 138 (639)
|+|+.|+|||||++++++.. ......+++|+......+.+++..++||||||+.+|... ...
T Consensus 1 l~G~~~~GKssl~~~~~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 68 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR------------QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARD 68 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc------------ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHH
Confidence 58999999999999997652 122234688888888888888899999999999887642 344
Q ss_pred HHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 139 VVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 139 ~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
++. .+|++|+|+|+... .+...++..+.+.++|+++|+||+|+..... +......+...++ +|+
T Consensus 69 ~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~-----~~~~~~~~~~~~~-------~~~ 134 (158)
T cd01879 69 FLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG-----IKIDLDKLSELLG-------VPV 134 (158)
T ss_pred HhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc-----chhhHHHHHHhhC-------CCe
Confidence 454 89999999999863 3334556667778999999999999965332 1111112222222 479
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++||++|. |++.+++.+.+..
T Consensus 135 ~~iSa~~~~--------------~~~~l~~~l~~~~ 156 (158)
T cd01879 135 VPTSARKGE--------------GIDELKDAIAELA 156 (158)
T ss_pred EEEEccCCC--------------CHHHHHHHHHHHh
Confidence 999999999 9999999987653
No 103
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.7e-17 Score=184.63 Aligned_cols=161 Identities=23% Similarity=0.258 Sum_probs=121.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
..++|+|+|++|+|||||+++|+... ....+...|+|.+.....+.+++..+.||||||+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~-----------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~ 278 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEE-----------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASG 278 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-----------cccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccch
Confidence 46899999999999999999999752 122334567887777777888899999999999632
Q ss_pred --chHH--HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 132 --FGGE--VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 132 --F~~e--v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
|... ...+++.+|++|+|+|+.++...+...++..+...+.|+|+|+||+|+...+ ....+.+++.+.+....
T Consensus 279 ~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~--~~~~~~~~i~~~l~~~~- 355 (472)
T PRK03003 279 HEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED--RRYYLEREIDRELAQVP- 355 (472)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh--HHHHHHHHHHHhcccCC-
Confidence 2221 2346789999999999999999999999999988999999999999996422 22223333333222211
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..|++++||++|. |++++++.+.+.+
T Consensus 356 -----~~~~~~~SAk~g~--------------gv~~lf~~i~~~~ 381 (472)
T PRK03003 356 -----WAPRVNISAKTGR--------------AVDKLVPALETAL 381 (472)
T ss_pred -----CCCEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999999 8888888887654
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=2.4e-17 Score=158.52 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|+.|+|||||+++|+.... ...+...|. ....+.++++.+++|||||+..|...+..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-----------~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~~~~~~ 77 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-----------DTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLRPYWRN 77 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-----------CCcCCcccc----ceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 346899999999999999999986511 111111222 22345566789999999999999888899
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHH----HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++++|+|+.+.-. .....++... ...+.|+++|+||+|+..... .+++.+++...... ...
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------~~~~~~~~~~~~~~--~~~ 149 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS------EEEIREALELDKIS--SHH 149 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC------HHHHHHHhCccccC--CCc
Confidence 9999999999999987622 2222333332 235789999999999865321 12222333211111 124
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+|++++||++|. |++++++++++
T Consensus 150 ~~~~~~Sa~~g~--------------gi~~l~~~l~~ 172 (173)
T cd04154 150 WRIQPCSAVTGE--------------GLLQGIDWLVD 172 (173)
T ss_pred eEEEeccCCCCc--------------CHHHHHHHHhc
Confidence 689999999998 99999999864
No 105
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=2.3e-17 Score=156.10 Aligned_cols=153 Identities=18% Similarity=0.267 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..++|||||+++|........ ......|.+ ...+.+++..+++|||||+.+|...+..+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---------~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ---------IIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYRGLWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc---------eecCccccc----eEEEEECCEEEEEEECCCCHhhHHHHHHHHc
Confidence 589999999999999999986521100 011111222 2335567889999999999999999999999
Q ss_pred hccEEEEEEeCCCCCch-hHHHHHHHHH------HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cccc
Q 006610 142 MVEGAILVVDAGEGPLA-QTKFVLAKAL------KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~-qt~~~l~~~~------~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~-~~~~ 213 (639)
.+|++|+|+|+.+.... ....++..+. ..++|+++|+||+|+...... .+ +.+.+ +... ....
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~--~~----~~~~l---~~~~~~~~~ 138 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA--VK----ITQLL---GLENIKDKP 138 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH--HH----HHHHh---CCccccCce
Confidence 99999999999876432 2223333332 247899999999998654221 11 11111 1110 1123
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
++++++||++|. |+++++++|.+
T Consensus 139 ~~~~~~Sa~~g~--------------gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGE--------------GLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCC--------------chHHHHHHHhc
Confidence 568999999999 99999999864
No 106
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=3.8e-17 Score=155.81 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG------ 134 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~------ 134 (639)
|+|+++|++|+|||||+++|+.... ..+...+.|.......+.+++.+++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 68 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP------------EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTI 68 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC------------ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchH
Confidence 5899999999999999999987521 1122235555556666677789999999999854211
Q ss_pred --HHHHHH-hhccEEEEEEeCCCCCc---hhHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 135 --EVERVV-GMVEGAILVVDAGEGPL---AQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 135 --ev~~~l-~~aD~allVVDa~~g~~---~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
....++ ..+|++|+|+|+.+... .....++..+... +.|+|+|+||+|+...+. ..+ ..++. ..
T Consensus 69 ~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~----~~~~~-~~- 140 (168)
T cd01897 69 EMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED--LSE----IEEEE-EL- 140 (168)
T ss_pred HHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh--HHH----HHHhh-hh-
Confidence 111122 33689999999976432 2233455555555 799999999999854322 111 11211 11
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..++++++||++|. |++++++++.+.+
T Consensus 141 -----~~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 167 (168)
T cd01897 141 -----EGEEVLKISTLTEE--------------GVDEVKNKACELL 167 (168)
T ss_pred -----ccCceEEEEecccC--------------CHHHHHHHHHHHh
Confidence 13579999999999 9999999998764
No 107
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.74 E-value=3.5e-17 Score=155.09 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=111.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|++++|||||+++|+...... ......|.+.......+...+.+++||||||+..|.......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~----------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE----------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHh
Confidence 479999999999999999999763211 0122224444444445555567899999999999988888899
Q ss_pred hhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 141 GMVEGAILVVDAGEGPL-AQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~-~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
+.+|++|+|+|+.+... .....++..+... ++|+++++||+|+....... .++...+....+ +++
T Consensus 72 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~~-------~~~ 140 (163)
T cd01860 72 RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS----TEEAQEYADENG-------LLF 140 (163)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC----HHHHHHHHHHcC-------CEE
Confidence 99999999999876532 3334455555444 47789999999986422111 112223333322 569
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |+.+++++|++.+|
T Consensus 141 ~~~Sa~~~~--------------~v~~l~~~l~~~l~ 163 (163)
T cd01860 141 FETSAKTGE--------------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEECCCCC--------------CHHHHHHHHHHHhC
Confidence 999999998 99999999998875
No 108
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.74 E-value=3.9e-17 Score=155.07 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|++|+|||||+++|+..........+..| .......+......+++|||||+.+|.......++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-----------~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-----------SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-----------hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHh
Confidence 7999999999999999999976432221111111 01112222233468899999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhH-HHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPLAQT-KFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt-~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|+.+....+. ..++..+. ..+.|+++|+||+|+....... .++...+.... .+|+
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~~~ 139 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS----TEEGKELARQW-------GCPF 139 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc----HHHHHHHHHHc-------CCEE
Confidence 9999999999986433222 22223322 2368999999999986432211 11122222222 2579
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |+++++++|++++.
T Consensus 140 ~~~Sa~~~~--------------~i~~l~~~l~~~~~ 162 (164)
T smart00173 140 LETSAKERV--------------NVDEAFYDLVREIR 162 (164)
T ss_pred EEeecCCCC--------------CHHHHHHHHHHHHh
Confidence 999999998 99999999998764
No 109
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.74 E-value=3.6e-17 Score=154.74 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.++|||||+++|....... . . -|+......+.+.+..++||||||+.+|...+..++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--------~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--------T---I----PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYS 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--------c---C----CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhc
Confidence 58999999999999999996542110 0 0 1222223345667889999999999999998999999
Q ss_pred hccEEEEEEeCCCCCch-hHHHHHHHH-H---HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPLA-QTKFVLAKA-L---KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~-qt~~~l~~~-~---~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++|+|+|+.+.... .....|... . ..+.|+++|+||+|+.+... ..++. ..+..... ....+++
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~----~~~~~~~~--~~~~~~~ 137 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEIS----EKLGLSEL--KDRTWSI 137 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHH----HHhCcccc--CCCcEEE
Confidence 99999999998874322 222333322 2 23789999999999865431 11221 11111111 1123579
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++||++|. |+++++++|.+
T Consensus 138 ~~~Sa~~~~--------------gi~~l~~~l~~ 157 (158)
T cd04151 138 FKTSAIKGE--------------GLDEGMDWLVN 157 (158)
T ss_pred EEeeccCCC--------------CHHHHHHHHhc
Confidence 999999999 99999999864
No 110
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.74 E-value=3.7e-17 Score=154.91 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=108.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
||+++|+.++|||||+++|+......... ...+.........+......++||||||+.+|.......++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQ----------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhc
Confidence 79999999999999999998763221111 11122222333333334468999999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 142 MVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+|++|+|+|+.+....+.. .++..... .++|+++|+||+|+...... ..+++..+....+ ++++
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~-------~~~~ 140 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREV----TFLEASRFAQENG-------LLFL 140 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC----CHHHHHHHHHHcC-------CEEE
Confidence 99999999999886554443 33343332 47899999999998542211 1122333333333 4699
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++||+++. |++++++.+++.
T Consensus 141 ~~Sa~~~~--------------~i~~~~~~~~~~ 160 (161)
T cd04113 141 ETSALTGE--------------NVEEAFLKCARS 160 (161)
T ss_pred EEECCCCC--------------CHHHHHHHHHHh
Confidence 99999999 999999999865
No 111
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=5.9e-17 Score=154.63 Aligned_cols=157 Identities=21% Similarity=0.186 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev 136 (639)
..++|+++|+.|+|||||+++|+..... ......++.......+.+.+ ..+.+|||||+.+|...+
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 73 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFP------------PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT 73 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 4689999999999999999999864211 01111222233333445555 568889999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH-HHHHHH---HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKA---LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~---~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.+|++|+|+|+.++...+.. .++..+ ...++|.++|+||+|+...+. +..++...+....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~-----i~~~~~~~~~~~~------ 142 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE-----VSQQRAEEFSDAQ------ 142 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-----cCHHHHHHHHHHc------
Confidence 9999999999999999876443322 233322 234788999999999854221 1111112222211
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..+++++||++|. |++++++.|.+++
T Consensus 143 ~~~~~~~Sa~~~~--------------gv~~l~~~i~~~~ 168 (169)
T cd04114 143 DMYYLETSAKESD--------------NVEKLFLDLACRL 168 (169)
T ss_pred CCeEEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 2469999999998 9999999998753
No 112
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=5.6e-17 Score=153.58 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+|+++|++|+|||||+++|+.... .....+.++.......+.+++ ..+++|||||+..|.......
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 69 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSY 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHH
Confidence 799999999999999999986521 111222333333334444444 688999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchhHHH-HHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++|+|+|+.+....+... ++..... .++|+++|+||+|+....... .+.+..+.... .++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~----~~~~~~~~~~~-------~~~ 138 (164)
T smart00175 70 YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS----REEAEAFAEEH-------GLP 138 (164)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC----HHHHHHHHHHc-------CCe
Confidence 99999999999998765444433 3344433 368999999999985422111 11122222222 256
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |++++++.|.+.++
T Consensus 139 ~~e~Sa~~~~--------------~i~~l~~~i~~~~~ 162 (164)
T smart00175 139 FFETSAKTNT--------------NVEEAFEELAREIL 162 (164)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988764
No 113
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.73 E-value=6.3e-17 Score=153.19 Aligned_cols=153 Identities=17% Similarity=0.219 Sum_probs=104.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee----cCceEEEEeCCCCCCchHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW----RENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~----~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+|+++|..++|||||+++|+....... ..+.+........+.+ ...+++||||||+.+|.....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD------------YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC------------CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHH
Confidence 699999999999999999987532111 1112222211122222 356899999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHH-HHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVL-AKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.+++.+|++++|+|+.+....+....| ..+.+ .++|+++|+||+|+....... .++...+...++ +
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 138 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVIT----NEEAEALAKRLQ-------L 138 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCC----HHHHHHHHHHcC-------C
Confidence 999999999999999875443433333 33322 378999999999985422111 122223333332 5
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
|++++||++|. |+++++++|.+.
T Consensus 139 ~~~~~Sa~~~~--------------~v~~l~~~l~~~ 161 (162)
T cd04106 139 PLFRTSVKDDF--------------NVTELFEYLAEK 161 (162)
T ss_pred eEEEEECCCCC--------------CHHHHHHHHHHh
Confidence 79999999998 999999998753
No 114
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=6.8e-17 Score=152.37 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|.+|+|||||+++|+..........+. +.+ ......+....+.+++|||||+.+|...+..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~----------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----------EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc----------hhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHH
Confidence 379999999999999999999753321111111 101 111122222335688999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|..+....+. ..++....+ .++|+++|+||+|+..... ..+++..+...++ +|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~-------~~ 138 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV-----SSRQGQDLAKSYG-------IP 138 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee-----cHHHHHHHHHHhC-------Ce
Confidence 99999999999876433222 223333332 4789999999999864211 1122223333322 47
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |++++++++++.+
T Consensus 139 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 161 (162)
T cd04138 139 YIETSAKTRQ--------------GVEEAFYTLVREI 161 (162)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHh
Confidence 9999999999 9999999998653
No 115
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.73 E-value=9.2e-17 Score=151.90 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=109.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~ 138 (639)
++|+++|++++|||||+++|+.... ..+...+++.+.....+.+++ .++++|||||+..|...+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF------------DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC------------CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 3799999999999999999987622 112333444444444455544 57999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHHH-Hc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKAL-KY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~-~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.++.+|++++|+|+.+....+. ..++.... .. ++|+++++||+|........ .++...+.... .+
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~----~~~~~~~~~~~-------~~ 137 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS----TEEGEKKAKEL-------NA 137 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC----HHHHHHHHHHh-------CC
Confidence 9999999999999987644333 23444332 33 48999999999985322111 11222222222 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++++||++|. |+++++++|.+.+
T Consensus 138 ~~~~~Sa~~~~--------------~v~~l~~~i~~~l 161 (161)
T cd01861 138 MFIETSAKAGH--------------NVKELFRKIASAL 161 (161)
T ss_pred EEEEEeCCCCC--------------CHHHHHHHHHHhC
Confidence 69999999999 9999999998753
No 116
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=9.4e-17 Score=177.29 Aligned_cols=154 Identities=26% Similarity=0.366 Sum_probs=120.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC--------c
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--------F 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d--------F 132 (639)
++|+|+|++|+|||||+++|++... .......|+|.+.....+.|.+..++||||||+.+ +
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-----------~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~ 70 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-----------AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQI 70 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-----------eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHH
Confidence 5799999999999999999986521 11223457777777788889999999999999988 3
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...+..++..+|++|+|+|+.++.......+++.+.+.+.|+|+|+||+|..... ..+.+ +..+++.
T Consensus 71 ~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--------~~~~~-~~~lg~~---- 137 (435)
T PRK00093 71 REQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--------ADAYE-FYSLGLG---- 137 (435)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--------hhHHH-HHhcCCC----
Confidence 3345678899999999999999988888888888888899999999999974311 11112 1234432
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.++++||++|. |++++++.|....+.
T Consensus 138 --~~~~iSa~~g~--------------gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 138 --EPYPISAEHGR--------------GIGDLLDAILEELPE 163 (435)
T ss_pred --CCEEEEeeCCC--------------CHHHHHHHHHhhCCc
Confidence 26899999999 999999999886544
No 117
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1e-16 Score=150.49 Aligned_cols=169 Identities=21% Similarity=0.190 Sum_probs=130.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCCchHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~dF~~ev~~ 138 (639)
--+|+|+|..++||||++.++..+.........-.++. ...|.+|+...+.++.+++ +.+.|+|||||.+|...++-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~--k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSG--KGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccccccc--ccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 45899999999999999999998754211000000111 1145688888888888876 99999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHHHHHHHcC-CCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG-LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~-lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.++.++++|++||++.+.....+++++.....+ +|++|++||.|+..+.+. +++.+++.... +..|++
T Consensus 88 l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp------e~i~e~l~~~~-----~~~~vi 156 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP------EKIREALKLEL-----LSVPVI 156 (187)
T ss_pred HhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH------HHHHHHHHhcc-----CCCcee
Confidence 999999999999999988777788888888888 999999999999887652 22333332211 357899
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhh-CCCC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH-VPPP 255 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~-lP~p 255 (639)
..+|.+++ +..+.|+.+..+ .+.+
T Consensus 157 ~~~a~e~~--------------~~~~~L~~ll~~~~~~~ 181 (187)
T COG2229 157 EIDATEGE--------------GARDQLDVLLLKDLLGS 181 (187)
T ss_pred eeecccch--------------hHHHHHHHHHhhcccCc
Confidence 99999998 888888888766 4443
No 118
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=7.7e-17 Score=151.03 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH-----
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE----- 135 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e----- 135 (639)
.+|+++|++|+|||||+++|+..... .....+++|.......+.+.+.++++|||||+.++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 70 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA-----------IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIG 70 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE-----------eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHH
Confidence 37999999999999999999865321 11123466666656667778889999999999887532
Q ss_pred ---HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 136 ---VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 136 ---v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
....+..+|++++|+|+...........+.. ..+.|+++|+||+|+...... . ....
T Consensus 71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----------~-------~~~~ 130 (157)
T cd04164 71 IERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----------L-------SLLA 130 (157)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----------c-------cccC
Confidence 3456778999999999997655555555444 568999999999998643221 0 1112
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..|++++||+++. |+++|+++|.+++
T Consensus 131 ~~~~~~~Sa~~~~--------------~v~~l~~~l~~~~ 156 (157)
T cd04164 131 GKPIIAISAKTGE--------------GLDELKEALLELA 156 (157)
T ss_pred CCceEEEECCCCC--------------CHHHHHHHHHHhh
Confidence 3679999999998 9999999987754
No 119
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=1.4e-16 Score=151.99 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..|+|||||+++++..........+. + ........+.++...+++|||||+.+|......++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----------E-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc----------h-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHh
Confidence 469999999999999999998763321111111 1 11122233344557899999999999998888899
Q ss_pred hhccEEEEEEeCCCCCchh-HHHHHHHHHH------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~q-t~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+.+|++|+|+|.++..... ...++..+.+ .++|+++|.||+|+....... .++...+.... .
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~-------~ 139 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVS----SNEGAACATEW-------N 139 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeec----HHHHHHHHHHh-------C
Confidence 9999999999988765433 3445554443 468999999999985422211 11111222222 2
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++++++||++|. |+++++++|++.
T Consensus 140 ~~~~e~SA~~g~--------------~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFMETSAKTNH--------------NVQELFQELLNL 163 (165)
T ss_pred CcEEEeecCCCC--------------CHHHHHHHHHhc
Confidence 468999999999 999999999754
No 120
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.72 E-value=1.2e-16 Score=152.73 Aligned_cols=157 Identities=19% Similarity=0.148 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev 136 (639)
...+|+++|.+++|||||+++++........ ...+.+......+.++ ...++||||||+.+|....
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~ 69 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSF------------ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT 69 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCccc------------ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 3578999999999999999999876332111 1111222222233333 3578999999999999888
Q ss_pred HHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...++.+|++|+|+|+.++...+. ..++..+.. .++|+++|.||+|+....... .++..++....
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~------- 138 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS----KEEGEALADEY------- 138 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC----HHHHHHHHHHc-------
Confidence 899999999999999987544332 334444433 367999999999996432211 12222333322
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+|++++||++|. |++++|+.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~--------------~v~~~~~~i~~~~ 164 (167)
T cd01867 139 GIKFLETSAKANI--------------NVEEAFFTLAKDI 164 (167)
T ss_pred CCEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999998 9999999998754
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=6.9e-17 Score=152.53 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.|+|||||+++++..... +...|+......+.+.+..++||||||+..|.......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYE 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhc
Confidence 5899999999999999999976310 0112222333456677889999999999999888899999
Q ss_pred hccEEEEEEeCCCCC-chhHHHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGP-LAQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~-~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|++.+- ......++.... ..+.|+++|+||+|+..... .+++.+. +.... .....+|+
T Consensus 66 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~----~~~~~--~~~~~~~~ 137 (158)
T cd00878 66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--VSELIEK----LGLEK--ILGRRWHI 137 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--HHHHHHh----hChhh--ccCCcEEE
Confidence 999999999998762 233334444332 35789999999999865331 1222221 11110 11124689
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++||++|. |++++++.|..
T Consensus 138 ~~~Sa~~~~--------------gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVTGD--------------GLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCCCC--------------CHHHHHHHHhh
Confidence 999999998 99999999875
No 122
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=1.8e-16 Score=165.86 Aligned_cols=160 Identities=25% Similarity=0.238 Sum_probs=113.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF------- 132 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF------- 132 (639)
...|+|+|++|+|||||+++|++.... ........|..........++.++.++||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~-----------~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~ 73 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKIS-----------IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRA 73 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCcee-----------ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHH
Confidence 467999999999999999999875321 11111222222222223335579999999997653
Q ss_pred -hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 133 -GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 133 -~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...+..++..+|++++|+|+.++.......++..+...+.|+++|+||+|+.. +.....+..+.+.+ ..+
T Consensus 74 ~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~---~~~----- 144 (292)
T PRK00089 74 MNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK-DKEELLPLLEELSE---LMD----- 144 (292)
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC-CHHHHHHHHHHHHh---hCC-----
Confidence 34455678899999999999987777777788888777899999999999953 22222222222222 122
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+++++||++|. |+++|++.|.+++|.
T Consensus 145 -~~~i~~iSA~~~~--------------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 -FAEIVPISALKGD--------------NVDELLDVIAKYLPE 172 (292)
T ss_pred -CCeEEEecCCCCC--------------CHHHHHHHHHHhCCC
Confidence 1459999999998 999999999999875
No 123
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=1.2e-16 Score=154.80 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=107.7
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC----
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA---- 130 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~---- 130 (639)
+...+..+|+|+|++|+|||||+++|+...+... .....|.|...... .++ ..+++|||||+.
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~----------~~~~~~~t~~~~~~--~~~-~~~~liDtpG~~~~~~ 79 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLAR----------TSKTPGRTQLINFF--EVN-DGFRLVDLPGYGYAKV 79 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc----------ccCCCCcceEEEEE--EeC-CcEEEEeCCCCccccC
Confidence 3345678999999999999999999987632111 11123444443322 223 379999999963
Q ss_pred ------CchHHHHHHHh---hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 131 ------DFGGEVERVVG---MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 131 ------dF~~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
+|......+++ .+|++++|+|+..+...++..+++.+...++|+++|+||+|+.. ........+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~i~~~ 157 (179)
T TIGR03598 80 SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK--KSELNKQLKKIKKA 157 (179)
T ss_pred ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC--HHHHHHHHHHHHHH
Confidence 24444445554 35899999999999999999888999889999999999999853 34445556666666
Q ss_pred HHhcCCCCccccccEEecccccCC
Q 006610 202 FANLGATDEQLDFPVLYASAKEGW 225 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~ 225 (639)
+...+. .++++++||++|+
T Consensus 158 l~~~~~-----~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 158 LKKDAD-----DPSVQLFSSLKKT 176 (179)
T ss_pred HhhccC-----CCceEEEECCCCC
Confidence 655432 2469999999998
No 124
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=1.3e-16 Score=185.72 Aligned_cols=157 Identities=23% Similarity=0.357 Sum_probs=125.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------ 131 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------ 131 (639)
...++|+|+|++|+|||||+++|++.. ....+...|+|.+.......|++..+++|||||+..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~-----------~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 341 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRR-----------EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGID 341 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCC-----------ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHH
Confidence 346899999999999999999998652 122334568888888888889999999999999763
Q ss_pred --chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 132 --FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 132 --F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
|...+..++..+|++|+|+|+.+++......+++.++..+.|+|+|+||+|+..... . ..+ +..++...
T Consensus 342 ~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~-----~---~~~-~~~lg~~~ 412 (712)
T PRK09518 342 SAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY-----D---AAE-FWKLGLGE 412 (712)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh-----h---HHH-HHHcCCCC
Confidence 456667789999999999999999988888888999999999999999999853211 1 111 22234322
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++||++|. |+++|+++|++.+|.
T Consensus 413 ------~~~iSA~~g~--------------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 ------PYPISAMHGR--------------GVGDLLDEALDSLKV 437 (712)
T ss_pred ------eEEEECCCCC--------------CchHHHHHHHHhccc
Confidence 5689999999 999999999998875
No 125
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.72 E-value=1.3e-16 Score=151.45 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|++++|||||+++|+..........+ -+.+.......+......++||||||+.+|.......++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPT----------IGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------cceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhc
Confidence 7999999999999999999976332111111 122222222333334578999999999999988888999
Q ss_pred hccEEEEEEeCCCCCchhHH-HHHHHHHH--------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 142 MVEGAILVVDAGEGPLAQTK-FVLAKALK--------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~-~~l~~~~~--------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+|++|+|+|+++....+.. .++..+.+ .+.|+++|+||+|+....... .++...+....+
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 141 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS----EDEGRLWAESKG------ 141 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC----HHHHHHHHHHcC------
Confidence 99999999999875443332 33333332 357899999999985311111 111112222222
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |+++++++|++.+
T Consensus 142 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~l 166 (168)
T cd04119 142 -FKYFETSACTGE--------------GVNEMFQTLFSSI 166 (168)
T ss_pred -CeEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 569999999999 9999999998764
No 126
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=8.5e-17 Score=156.98 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=108.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|...... ....|+......+.+.+..++++||||+.+|...+..+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---------------~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA---------------QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDY 83 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc---------------ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 578999999999999999999764211 00112222334566778899999999999998888899
Q ss_pred HhhccEEEEEEeCCCCCc-hhHHHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC-------
Q 006610 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA------- 207 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~-~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~------- 207 (639)
++.+|++++|+|+.+.-. ......+.... ..+.|+++|+||+|+..... .+++.+++.....
T Consensus 84 ~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 84 FPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS------EEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcC------HHHHHHHhCccccccccccc
Confidence 999999999999876422 22233333332 35689999999999864321 1222233221110
Q ss_pred --CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 208 --TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 208 --~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
......++++++||++|. |+++++++|.+++
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~--------------gv~e~~~~l~~~~ 190 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKRQ--------------GYGEAFRWLSQYL 190 (190)
T ss_pred ccccCceeEEEEEeEecCCC--------------ChHHHHHHHHhhC
Confidence 011123579999999999 9999999998764
No 127
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.72 E-value=2.8e-17 Score=139.39 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=78.9
Q ss_pred CCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec
Q 006610 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (639)
Q Consensus 260 ~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~ 339 (639)
++||+++|||+.+|++.|+++++|||+|+|+.||.|++.. . ..+|+.+|+.++|.++.++++|.||||+++.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~ 72 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-E-------EKIKITELRVFNNGEVVTADTVTAGDIAILT 72 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-C-------cEEEeceeEEEeCCCeEECcEECCCCEEEEE
Confidence 4799999999999999999999999999999999998764 1 4578999999999999999999999999999
Q ss_pred CCCCCCcCCeeee
Q 006610 340 GMTKPSIGHTVAN 352 (639)
Q Consensus 340 gl~~~~~Gdtl~~ 352 (639)
|++++.+||||++
T Consensus 73 gl~~~~~Gdtl~~ 85 (85)
T cd03690 73 GLKGLRVGDVLGD 85 (85)
T ss_pred CCCCCcCccccCC
Confidence 9999999999964
No 128
>PTZ00369 Ras-like protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=155.77 Aligned_cols=158 Identities=17% Similarity=0.163 Sum_probs=108.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++++..........+. +.+. .....+....+.++||||||+.+|...+..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----------EDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----------hhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHH
Confidence 3689999999999999999999763322111111 1111 1222334445679999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++|+|+|+++....+ ...++....+ .++|+++|+||+|+.....-... +...+...+ .+
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~----~~~~~~~~~-------~~ 142 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG----EGQELAKSF-------GI 142 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH----HHHHHHHHh-------CC
Confidence 99999999999998754322 2333333332 37899999999998543221111 111222222 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
|++++||++|. |++++|++|++.+.
T Consensus 143 ~~~e~Sak~~~--------------gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 143 PFLETSAKQRV--------------NVDEAFYELVREIR 167 (189)
T ss_pred EEEEeeCCCCC--------------CHHHHHHHHHHHHH
Confidence 79999999998 99999999987764
No 129
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.72 E-value=1.2e-16 Score=152.33 Aligned_cols=158 Identities=21% Similarity=0.178 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..|+|||||+++|+......... ..-|++..............+.||||||+.+|...+...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV----------STVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------CceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHc
Confidence 479999999999999999998753211111 1112222222222222346799999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchh-HHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
+.+|++++|+|..+....+ ...++..+... +.|+++|+||+|+....... .++..++...++ +|+
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~~ 140 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS----SERGRQLADQLG-------FEF 140 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC----HHHHHHHHHHcC-------CEE
Confidence 9999999999987643322 33445555443 57899999999986433211 112222223332 469
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |+++|++.+.+.++
T Consensus 141 ~~~Sa~~~~--------------gv~~l~~~l~~~~~ 163 (165)
T cd01865 141 FEASAKENI--------------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 999999999 99999999987654
No 130
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=2.8e-16 Score=153.97 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=116.0
Q ss_pred CCCCCCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 50 SPNSTLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 50 ~~~~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
++++.+.....++|+++|++|+|||||+++|+...... ......|.|....... + +.+++||||||+
T Consensus 14 ~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~----------~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~ 80 (196)
T PRK00454 14 PKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLA----------RTSKTPGRTQLINFFE--V-NDKLRLVDLPGY 80 (196)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc----------cccCCCCceeEEEEEe--c-CCeEEEeCCCCC
Confidence 34555566678999999999999999999999752111 1112234444433322 2 478999999996
Q ss_pred C----------CchHHHHHHHhhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHH
Q 006610 130 A----------DFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVES 196 (639)
Q Consensus 130 ~----------dF~~ev~~~l~~a---D~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~ 196 (639)
. .|......+++.+ +++++|+|+..+.......+++.+...++|+++++||+|+... ...+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~--~~~~~~~~ 158 (196)
T PRK00454 81 GYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK--GERKKQLK 158 (196)
T ss_pred CCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH--HHHHHHHH
Confidence 3 2333444455544 6788999988877777667777778889999999999998532 23333344
Q ss_pred HHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 197 ~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++...+... ..+++++||++|. |++++++.|.+.+.
T Consensus 159 ~i~~~l~~~-------~~~~~~~Sa~~~~--------------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 159 KVRKALKFG-------DDEVILFSSLKKQ--------------GIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHhc-------CCceEEEEcCCCC--------------CHHHHHHHHHHHhc
Confidence 444444322 2468999999998 99999999987764
No 131
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=1.4e-16 Score=155.11 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEE-eecCceEEEEeCCCCCCchHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI-SWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~-~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.+|+++|+.|+|||||+++++....... ....|.+........ .+.+..++||||||+..|...+..+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-----------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-----------CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHH
Confidence 5799999999999999999986532111 011122222211111 3356789999999999998888889
Q ss_pred HhhccEEEEEEeCCCCCchh-HHH----HHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKF----VLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~----~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++|+|+|+.+..... ... ++......++|+++|+||+|+..... .+++..++..... .....+
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~------~~~~~~~~~~~~~-~~~~~~ 145 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS------VSEVEKLLALHEL-SASTPW 145 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC------HHHHHHHhCcccc-CCCCce
Confidence 99999999999998753222 122 22333345799999999999854211 1111111110011 011135
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++++||++|. |+++++++|.+.+-
T Consensus 146 ~~~~~SA~~~~--------------gi~~l~~~l~~~l~ 170 (183)
T cd04152 146 HVQPACAIIGE--------------GLQEGLEKLYEMIL 170 (183)
T ss_pred EEEEeecccCC--------------CHHHHHHHHHHHHH
Confidence 78999999999 99999999987763
No 132
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.71 E-value=1.3e-16 Score=152.19 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=107.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.++|||||+++|+.......... .-|..+......+.....+++||||||+..|...+...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 71 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH----------TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSY 71 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCc----------ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 36899999999999999999986532211111 11222222223333334678999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++|+|+|+++....+.. .++..... .+.|+++|.||+|+....... .++...+.... .++
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~~ 140 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT----YEEAKQFADEN-------GLL 140 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC----HHHHHHHHHHc-------CCE
Confidence 9999999999999875443333 34444433 356889999999986533211 12222333322 257
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |++++|+.++..+
T Consensus 141 ~~e~Sa~~~~--------------~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGE--------------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 9999999999 9999998887643
No 133
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=1.5e-16 Score=151.51 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=106.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev~ 137 (639)
..+|+++|..|+|||||+++++...... .....++.......+..+ ..+++||||||+.+|.....
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHH
Confidence 3689999999999999999998652211 111122222222333333 45789999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
..++.+|++|+|+|+++..... ...++..... .++|+++|.||+|+........ ++...+.... .
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~-------~ 138 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDY----SEAQEFADEL-------G 138 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCH----HHHHHHHHHc-------C
Confidence 9999999999999998743222 2334444433 3689999999999854322111 1222222222 3
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+|++++||++|. |++++++.|++.+
T Consensus 139 ~~~~~~Sa~~~~--------------~v~~~~~~i~~~~ 163 (166)
T cd01869 139 IPFLETSAKNAT--------------NVEQAFMTMAREI 163 (166)
T ss_pred CeEEEEECCCCc--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998754
No 134
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=2.2e-16 Score=149.53 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|.+|+|||||+++++..........+..+ ...+...+......+.||||||+.+|......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-----------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-----------SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-----------hEEEEEEECCEEEEEEEEECCCccccchHHHHHh
Confidence 47999999999999999999965332211111100 0111122223346788999999999998888999
Q ss_pred hhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|..+.... ....++..+.+ .++|+|+|+||+|+...+... .++...+...++ .|
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 139 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVS----REEGQALARQWG-------CP 139 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceec----HHHHHHHHHHcC-------Ce
Confidence 999999999998764332 22334444433 368999999999985422111 111222222222 57
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |+.++++++++.+
T Consensus 140 ~~~~Sa~~~~--------------~v~~l~~~l~~~~ 162 (163)
T cd04136 140 FYETSAKSKI--------------NVDEVFADLVRQI 162 (163)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHhc
Confidence 9999999998 9999999998754
No 135
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.71 E-value=2e-16 Score=151.66 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=107.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..++|||||+++|....... ...|+......+.+++.++++|||||+.+|...+..+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---------------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ---------------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC---------------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhc
Confidence 48999999999999999998652110 112222233456678899999999999999999999999
Q ss_pred hccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|+++.. ......++..+.+ .+.|+++|+||+|+..... .+++.+++...... ....+++
T Consensus 66 ~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~~~-~~~~~~~ 138 (169)
T cd04158 66 NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS------VEEMTELLSLHKLC-CGRSWYI 138 (169)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC------HHHHHHHhCCcccc-CCCcEEE
Confidence 999999999987642 2233344444432 2478999999999854211 11122222111110 0112468
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++||++|. |++++|++|.+.++.
T Consensus 139 ~~~Sa~~g~--------------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 139 QGCDARSGM--------------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCCCCC--------------CHHHHHHHHHHHHhh
Confidence 899999999 999999999987754
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=2.3e-16 Score=152.07 Aligned_cols=153 Identities=24% Similarity=0.221 Sum_probs=107.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.++|+++|+.++|||||+++|+...... ...|+......+.+++..+.||||||+..|...+..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 79 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH---------------TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTY 79 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC---------------cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHH
Confidence 4689999999999999999998642210 0123333345566778899999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCch-hHHHHHHHHH-H---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cccc
Q 006610 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKAL-K---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~-qt~~~l~~~~-~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~-~~~~ 213 (639)
++.+|++|+|+|+++.... .....+..+. . .++|+++++||+|+.+... ..++.+ . ++... ....
T Consensus 80 ~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~--~~~i~~----~---l~~~~~~~~~ 150 (174)
T cd04153 80 YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT--PAEISE----S---LGLTSIRDHT 150 (174)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC--HHHHHH----H---hCcccccCCc
Confidence 9999999999999875322 2223333332 2 3589999999999865311 122221 1 12111 1234
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
++++++||++|. |+++++++|.+
T Consensus 151 ~~~~~~SA~~g~--------------gi~e~~~~l~~ 173 (174)
T cd04153 151 WHIQGCCALTGE--------------GLPEGLDWIAS 173 (174)
T ss_pred eEEEecccCCCC--------------CHHHHHHHHhc
Confidence 689999999999 99999999864
No 137
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1.1e-16 Score=186.29 Aligned_cols=163 Identities=22% Similarity=0.252 Sum_probs=122.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
..++|+|+|++|+|||||+++|++.. ........|+|.+.....+.+++..++||||||+.+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~-----------~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~ 517 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEE-----------RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTG 517 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc-----------ccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchh
Confidence 46899999999999999999999762 112233467887777777888999999999999642
Q ss_pred --chHH--HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 132 --FGGE--VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 132 --F~~e--v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
|... ...+++.+|++|+|+|+.++...++..++..+...+.|+|+|+||+|+... .....+.+.+...+....
T Consensus 518 ~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~- 594 (712)
T PRK09518 518 AEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE--FRRQRLERLWKTEFDRVT- 594 (712)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh--hHHHHHHHHHHHhccCCC-
Confidence 2211 245678899999999999999999999999998899999999999998542 222222222322221111
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..|++++||++|. |+++|++.+.+.++.
T Consensus 595 -----~~~ii~iSAktg~--------------gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 595 -----WARRVNLSAKTGW--------------HTNRLAPAMQEALES 622 (712)
T ss_pred -----CCCEEEEECCCCC--------------CHHHHHHHHHHHHHH
Confidence 2578999999999 899999988876653
No 138
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=1.7e-16 Score=152.01 Aligned_cols=161 Identities=20% Similarity=0.229 Sum_probs=108.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..++|||||+++|... .... ...|+......+.+++..+++|||||+..|...+..+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~--------------~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKK--------------VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYA 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCcc--------------ccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHc
Confidence 4899999999999999999754 1100 111222223456678899999999999999999999999
Q ss_pred hccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++|+|+|+.+.-. .....++..+.. .+.|+++|+||+|++++... .++.+.+ + +..+ +......+++
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~--~~i~~~~-~-l~~~-~~~~~~~~~~ 140 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG--ADVIEYL-S-LEKL-VNENKSLCHI 140 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH--HHHHHhc-C-cccc-cCCCCceEEE
Confidence 9999999999887432 233445554433 37899999999999765421 1222111 0 0111 1111234678
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++||++|++... ..|+.+.|+||..
T Consensus 141 ~~~Sa~~g~~~~~--------~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKI--------DPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCcc--------ccCHHHHHHHHhc
Confidence 9999999953211 1289999999864
No 139
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.71 E-value=2.1e-16 Score=151.28 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=109.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|++|+|||||+++++......... ...|.+.......+......++||||||+.+|......+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 4689999999999999999998653211110 112344433434444444689999999999999888999
Q ss_pred HhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++|+|+|+++....+.. .++..+.+ .++|+++|.||+|+....... .++...+....+ ++
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 142 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS----YEEGEAFAKEHG-------LI 142 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC----HHHHHHHHHHcC-------CE
Confidence 9999999999999865444333 34444433 368899999999986322111 122223333322 46
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||+++. |++++|+.+.+.+
T Consensus 143 ~~e~Sa~~~~--------------~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTAS--------------NVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 8999999999 9999999988765
No 140
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=4e-16 Score=146.97 Aligned_cols=158 Identities=23% Similarity=0.183 Sum_probs=109.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------ 133 (639)
.++|+++|.+|+|||||+++|++..-. ........+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 71 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKIS-----------IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGER 71 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceE-----------eccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHH
Confidence 467999999999999999999865211 011111222222333344456789999999987543
Q ss_pred --HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 134 --GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 134 --~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
......+..+|++++|+|+.+........+++.+...+.|.++|+||+|+.. ......+..+.+ .....
T Consensus 72 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~---~~~~~----- 142 (168)
T cd04163 72 MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK-DKEDLLPLLEKL---KELGP----- 142 (168)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc-cHHHHHHHHHHH---HhccC-----
Confidence 2345568899999999999987666666777777778899999999999853 222222222222 11111
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..|++.+|++++. |+++|++.|.+++
T Consensus 143 -~~~~~~~s~~~~~--------------~~~~l~~~l~~~~ 168 (168)
T cd04163 143 -FAEIFPISALKGE--------------NVDELLEEIVKYL 168 (168)
T ss_pred -CCceEEEEeccCC--------------ChHHHHHHHHhhC
Confidence 2469999999998 9999999997653
No 141
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.71 E-value=1.5e-16 Score=150.64 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.++|||||+++|+...... ......+.+.......+......++||||||+..|.......++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 71 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP----------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc----------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhC
Confidence 79999999999999999998653211 11122233333333333333468999999999999888888999
Q ss_pred hccEEEEEEeCCCCCchhHHH-HHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPLAQTKF-VLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~-~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++|+|+|+.+....+... ++..+. ..+.|+++|+||+|+...... .++...+.... .+++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~-----~~~~~~~~~~~-------~~~~ 139 (161)
T cd01863 72 GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT-----REEGLKFARKH-------NMLF 139 (161)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccC-----HHHHHHHHHHc-------CCEE
Confidence 999999999988754433332 333333 347889999999998632211 11222222222 3679
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
+++||++|. |++++++.+++.
T Consensus 140 ~~~Sa~~~~--------------gi~~~~~~~~~~ 160 (161)
T cd01863 140 IETSAKTRD--------------GVQQAFEELVEK 160 (161)
T ss_pred EEEecCCCC--------------CHHHHHHHHHHh
Confidence 999999998 999999998865
No 142
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.71 E-value=2.5e-16 Score=149.75 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=107.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~ 137 (639)
..+|+++|.+++|||||+++|+..... .+..+.++.......+..++ ..+++|||||+..|.....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN------------LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence 468999999999999999999865321 11112222222233333333 5789999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
..++.+|++|+|+|+.+....+. ..++..+.+ .++|+++|+||+|+....... .++...+.... .
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~ 139 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP----TEEAKAFAEKN-------G 139 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC----HHHHHHHHHHc-------C
Confidence 99999999999999986443332 234444443 258899999999986432211 12222332222 2
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |++.+++.+++.+
T Consensus 140 ~~~~~~Sa~~~~--------------~v~~l~~~l~~~i 164 (165)
T cd01868 140 LSFIETSALDGT--------------NVEEAFKQLLTEI 164 (165)
T ss_pred CEEEEEECCCCC--------------CHHHHHHHHHHHh
Confidence 579999999998 9999999998765
No 143
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=1e-16 Score=152.32 Aligned_cols=144 Identities=21% Similarity=0.292 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC----CCchHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH----ADFGGEV 136 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh----~dF~~ev 136 (639)
++|+++|++|+|||||+++|.+.. ... .....+.|... ++|||||+ .++..+.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~-------------~~~--------~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~ 58 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNY-------------TLA--------RKTQAVEFNDK--GDIDTPGEYFSHPRWYHAL 58 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC-------------ccC--------ccceEEEECCC--CcccCCccccCCHHHHHHH
Confidence 479999999999999999987431 000 11122333332 37999996 4566666
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
..+++.+|++|+|+|++++....+..++.. ..+.|+++++||+|+...+.. .+.+++..+++ ..|+
T Consensus 59 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~-------~~~~~~~~~~~-----~~p~ 124 (158)
T PRK15467 59 ITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVA-------ATRKLLLETGF-----EEPI 124 (158)
T ss_pred HHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHH-------HHHHHHHHcCC-----CCCE
Confidence 677899999999999998765554433332 246789999999998654332 23344444443 1489
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+++||++|. |+++|++.+.+.++.-
T Consensus 125 ~~~Sa~~g~--------------gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 125 FELNSHDPQ--------------SVQQLVDYLASLTKQE 149 (158)
T ss_pred EEEECCCcc--------------CHHHHHHHHHHhchhh
Confidence 999999999 9999999998877643
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=3.2e-16 Score=154.51 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
+..+|+++|.+|+|||||+++|.+.. ...+..+|+|..... +.+. .+++|||||+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~------------~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~ 71 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK------------VRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKE 71 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------CccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHH
Confidence 45789999999999999999997541 122334566665433 3333 699999999633
Q ss_pred ----chHHHHH----HHhhccEEEEEEeCCCC-----------CchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHH
Q 006610 132 ----FGGEVER----VVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCD 192 (639)
Q Consensus 132 ----F~~ev~~----~l~~aD~allVVDa~~g-----------~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ 192 (639)
|...+.. .+..+|++++|+|+... ...++.+++..+...++|+++|+||+|+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~---- 147 (201)
T PRK04213 72 VQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRD---- 147 (201)
T ss_pred HHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHH----
Confidence 2222222 33456899999998642 233456777877788999999999999864331
Q ss_pred HHHHHHHHHHHhcCCC--CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 193 EVESLVFDLFANLGAT--DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 193 ~v~~~i~~l~~~~g~~--~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
+..+++. ..++.. ......+++++||++| |+++++++|.+.++.-.
T Consensus 148 ~~~~~~~---~~~~~~~~~~~~~~~~~~~SA~~g---------------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 148 EVLDEIA---ERLGLYPPWRQWQDIIAPISAKKG---------------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHH---HHhcCCccccccCCcEEEEecccC---------------CHHHHHHHHHHhhcCcc
Confidence 1222222 223321 1111247899999998 68899999999886543
No 145
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.71 E-value=3.2e-16 Score=149.04 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..|+|||||+++++..........++ +-+. .....+....+.++||||||+..|.......+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI----------EDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----------hheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHH
Confidence 479999999999999999998542221111111 1111 11222222346788999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|..+....+ ...++..... .++|+++|+||+|+......... +...+...+ .+|
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~-------~~~ 139 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE----QGQNLARQW-------GCA 139 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHH----HHHHHHHHh-------CCE
Confidence 9999999999987654332 2334444432 46899999999998543211111 111222222 257
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |+++++++|++.+
T Consensus 140 ~~~~Sa~~~~--------------~v~~~~~~l~~~l 162 (164)
T cd04175 140 FLETSAKAKI--------------NVNEIFYDLVRQI 162 (164)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 9999999999 9999999998754
No 146
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.70 E-value=2.2e-16 Score=155.94 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=107.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe-ecCceEEEEeCCCCCCchHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~-~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
+|+++|..|+|||||+++|+......... ...|.........+. ...+.++||||||+..|...+..++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~----------~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYK----------ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC----------CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHh
Confidence 79999999999999999999753211111 111111222222222 3356789999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhHHH-HHHHHH-------HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 141 GMVEGAILVVDAGEGPLAQTKF-VLAKAL-------KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~-~l~~~~-------~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
+.+|++|+|+|.++....+... ++..+. ..++|+|+|+||+|+...... ..+++.++....+.
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~----- 142 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK----DGEQMDQFCKENGF----- 142 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc----CHHHHHHHHHHcCC-----
Confidence 9999999999988754433332 223322 146799999999998531111 12233344444432
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+++++||++|. |+++++++|++.+.
T Consensus 143 -~~~~e~Sak~~~--------------~v~e~f~~l~~~l~ 168 (201)
T cd04107 143 -IGWFETSAKEGI--------------NIEEAMRFLVKNIL 168 (201)
T ss_pred -ceEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 368999999998 99999999987764
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=9.7e-17 Score=149.24 Aligned_cols=149 Identities=27% Similarity=0.300 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~ 138 (639)
.||+++|++|+|||||+++|+... .+.+..++++.......+.+++ +.+.+|||||+.+|......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRL 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHH
Confidence 589999999999999999998762 2223344666666555566777 78999999999999877777
Q ss_pred HHhhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 139 VVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
..+.++.++.++|.... .......+++.+.. +.|+++++||+|+...+ ........+..++.
T Consensus 70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~---- 138 (161)
T TIGR00231 70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK------LKTHVAFLFAKLNG---- 138 (161)
T ss_pred HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch------hhHHHHHHHhhccC----
Confidence 77777777766665433 22333344444433 88999999999996532 22233333333332
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
.|++++||++|. |+.+++++|
T Consensus 139 --~~~~~~sa~~~~--------------gv~~~~~~l 159 (161)
T TIGR00231 139 --EPIIPLSAETGK--------------NIDSAFKIV 159 (161)
T ss_pred --CceEEeecCCCC--------------CHHHHHHHh
Confidence 469999999998 999999886
No 148
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.70 E-value=3.4e-16 Score=150.15 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=104.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.++|||||+++|...... .....-|.+ ...+.+.+.+++||||||+..|...+..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-----------~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 73 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-----------TTIPTVGFN----VETVTYKNVKFNVWDVGGQDKIRPLWRHY 73 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-----------cccCCcccc----eEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 468999999999999999999754211 001111222 22445577899999999999998888889
Q ss_pred HhhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++|+|+|+++.. ......+|..... .+.|+++|.||+|+..... .+++.+.+..... ....+
T Consensus 74 ~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~i~~~~~~~~~--~~~~~ 145 (168)
T cd04149 74 YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK------PHEIQEKLGLTRI--RDRNW 145 (168)
T ss_pred hccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC------HHHHHHHcCCCcc--CCCcE
Confidence 99999999999988742 2333344444322 3689999999999854211 1122222110000 11235
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++++||++|. |++++|++|.+
T Consensus 146 ~~~~~SAk~g~--------------gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGD--------------GLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCC--------------ChHHHHHHHhc
Confidence 78999999999 99999999864
No 149
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.70 E-value=3.9e-16 Score=148.30 Aligned_cols=152 Identities=18% Similarity=0.220 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.++|||||+.+|....... . ...-|. ....+.++...++||||||+..|...+..+++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~--------~---~pt~g~----~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 66 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT--------T---IPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 66 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc--------c---CCCCCc----ceEEEEECCEEEEEEECCCCHhHHHHHHHHhc
Confidence 69999999999999999997542210 0 011122 22335567889999999999999988899999
Q ss_pred hccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++|+|+|+++.. ..+....|..+.. .+.|+++++||+|+.+... ..++. ..+...... ...+.+
T Consensus 67 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~~--~~~~~~ 138 (159)
T cd04150 67 NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVT----DKLGLHSLR--NRNWYI 138 (159)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHH----HHhCccccC--CCCEEE
Confidence 999999999987642 2333344444422 2589999999999864322 11221 212111111 123568
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+++||++|. |+++++++|.+
T Consensus 139 ~~~Sak~g~--------------gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGD--------------GLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCC--------------CHHHHHHHHhc
Confidence 899999999 99999999864
No 150
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.70 E-value=3.3e-16 Score=150.18 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=105.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchH-HH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGG-EV 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~-ev 136 (639)
..+|+++|+.|+|||||+++++.... +.+....+........+.++ .+.++||||||+.+|.. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 69 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF------------PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV 69 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC------------CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH
Confidence 57899999999999999999986421 11111222222222333343 47899999999999874 56
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHH-HHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVL-AKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l-~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...++.+|++++|+|+.+....+....| ..+... ++|+++|+||+|+....... .++..++....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~------ 139 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP----TDLAQRFADAH------ 139 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC----HHHHHHHHHHc------
Confidence 7788999999999999887655555444 344433 58999999999985432211 11111222221
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||+++... .++.++|..+++.+
T Consensus 140 -~~~~~e~Sa~~~~~~-----------~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 -SMPLFETSAKDPSEN-----------DHVEAIFMTLAHKL 168 (170)
T ss_pred -CCcEEEEeccCCcCC-----------CCHHHHHHHHHHHh
Confidence 257999999994311 18999999988754
No 151
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.70 E-value=3.8e-16 Score=149.41 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=106.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|..++|||||+++++........ ....|.........+..+...++||||||+..|......
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~ 73 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL----------FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTP 73 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc----------CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHH
Confidence 3578999999999999999999865221110 011122222222223333467889999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhHHH-HHHHHHH-------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKF-VLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
+++.+|++|+|+|..+....+... +...... .++|+++|+||+|+..... ..+++.++...++.
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~--- 145 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV-----STEEAQAWCRENGD--- 145 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccccc-----CHHHHHHHHHHCCC---
Confidence 999999999999988764333332 2222221 3579999999999852111 12233334443332
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
.+++++||++|. |+.++++.+++.
T Consensus 146 ---~~~~e~Sa~~~~--------------~v~~~~~~~~~~ 169 (170)
T cd04116 146 ---YPYFETSAKDAT--------------NVAAAFEEAVRR 169 (170)
T ss_pred ---CeEEEEECCCCC--------------CHHHHHHHHHhh
Confidence 468999999998 999999999865
No 152
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.70 E-value=2.3e-16 Score=150.68 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+|+++|++|+|||||+++|+.......... ..+.+... ..+.+. ...+++|||||+.+|.......
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~----------t~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 69 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKA----------TIGADFLT--KEVTVDDKLVTLQIWDTAGQERFQSLGVAF 69 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCC----------ccceEEEE--EEEEECCEEEEEEEEeCCChHHHHhHHHHH
Confidence 799999999999999999987632111100 01211211 223333 3567899999999999989999
Q ss_pred HhhccEEEEEEeCCCCCchhHHHHH-HHHHH-------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTKFVL-AKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~~~l-~~~~~-------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
++.+|++|+|+|+.+....+....| ..... .++|+++|+||+|+...+... .+++..+....+
T Consensus 70 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----- 140 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVS----TKKAQQWCQSNG----- 140 (172)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccC----HHHHHHHHHHcC-----
Confidence 9999999999999876433322222 22111 278999999999996322111 122233333333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |+++++++|.+.+
T Consensus 141 -~~~~~~~Sa~~~~--------------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 -NIPYFETSAKEAI--------------NVEQAFETIARKA 166 (172)
T ss_pred -CceEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999998 9999999998754
No 153
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.70 E-value=2.6e-16 Score=148.89 Aligned_cols=156 Identities=20% Similarity=0.188 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|.+|+|||||+++|+..........+..+. ......+......+.||||||+.+|......++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-----------YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-----------EEEEEEECCEEEEEEEEECCChhhhhHHHHHHh
Confidence 379999999999999999999764322111111111 111222333456899999999999999999999
Q ss_pred hhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|..+.-.. ....++..... .++|+++|+||+|+....... ..+...+...+ .+|
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~----~~~~~~~~~~~-------~~~ 138 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS----SEEAANLARQW-------GVP 138 (164)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccC----HHHHHHHHHHh-------CCe
Confidence 999999999998754221 12233333332 579999999999985421111 11122222222 257
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQ--------------NVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHHH
Confidence 9999999999 9999999998654
No 154
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=4.6e-16 Score=148.60 Aligned_cols=158 Identities=17% Similarity=0.111 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.|+|||||+++|+..........+ ....++. ..+...+++++||||||+.++...+...++
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 69 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV---------LPEITIP---ADVTPERVPTTIVDTSSRPQDRANLAAEIR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCc---------ccceEee---eeecCCeEEEEEEeCCCchhhhHHHhhhcc
Confidence 7999999999999999999976332111100 0011211 122235578999999999988888888889
Q ss_pred hccEEEEEEeCCCCCchhHH--HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 142 MVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+|++++|+|+.+....+.. .++..+.. .++|+++|+||+|+.+..... ...+++..+...+.. ..+++
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~ 142 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA--GLEEEMLPIMNEFRE-----IETCV 142 (166)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh--HHHHHHHHHHHHHhc-----ccEEE
Confidence 99999999999876555542 33344443 378999999999996533211 111222222222211 02699
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++||++|. |++++++.+...+
T Consensus 143 e~Sa~~~~--------------~v~~lf~~~~~~~ 163 (166)
T cd01893 143 ECSAKTLI--------------NVSEVFYYAQKAV 163 (166)
T ss_pred Eecccccc--------------CHHHHHHHHHHHh
Confidence 99999999 9999999987654
No 155
>PLN03118 Rab family protein; Provisional
Probab=99.70 E-value=4.5e-16 Score=154.94 Aligned_cols=159 Identities=20% Similarity=0.179 Sum_probs=108.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+|+|+.|+|||||+++|+.... .......|.+.......+....+.++||||||+.+|......+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 82 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-----------EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSY 82 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-----------CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 46899999999999999999987521 1111112222222222222234688999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchhHH-HHHHH-HH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTK-FVLAK-AL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~-~~l~~-~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
++.+|++|+|+|+.+....+.. ..|.. .. ..+.|+++|+||+|+....... .++...+.... .
T Consensus 83 ~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~----~~~~~~~~~~~-------~ 151 (211)
T PLN03118 83 YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS----REEGMALAKEH-------G 151 (211)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC----HHHHHHHHHHc-------C
Confidence 9999999999999875444433 23432 22 1357889999999986432211 11122222222 2
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||++|. |++++++.|.+.+..
T Consensus 152 ~~~~e~SAk~~~--------------~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 152 CLFLECSAKTRE--------------NVEQCFEELALKIME 178 (211)
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHHHh
Confidence 569999999998 999999999987743
No 156
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=1.8e-16 Score=183.90 Aligned_cols=154 Identities=25% Similarity=0.316 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH----
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE---- 135 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e---- 135 (639)
..+|+++|++|+|||||+|+|++.. .......|.|+..+...+.++++++++|||||+.+|...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~------------~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~ 70 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT 70 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC------------CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccc
Confidence 3589999999999999999997541 123345799999988899999999999999999887531
Q ss_pred ------HHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 136 ------VERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 136 ------v~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
...++ ..+|++++|+|+++.. ....++.++.+.++|+++|+||+|+...+. +...+.++-+.+|
T Consensus 71 s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~-----i~id~~~L~~~LG- 142 (772)
T PRK09554 71 SLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIDIDALSARLG- 142 (772)
T ss_pred cHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccC-----cHHHHHHHHHHhC-
Confidence 11222 3689999999998753 345577888899999999999999853221 1112222223333
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |++++.+.+.+..+
T Consensus 143 ------~pVvpiSA~~g~--------------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 143 ------CPVIPLVSTRGR--------------GIEALKLAIDRHQA 168 (772)
T ss_pred ------CCEEEEEeecCC--------------CHHHHHHHHHHhhh
Confidence 589999999998 99999999987654
No 157
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=3.9e-16 Score=154.28 Aligned_cols=155 Identities=21% Similarity=0.234 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.|+++|..|+|||||+.++........ ....+++......+.+++ .+++||||+|+..|...+..+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~------------~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y 69 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA------------CKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 69 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc------------CCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHH
Confidence 589999999999999999987533211 111222222223344444 788999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchhHHH-HHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++|+|+|.++....+... ++..+.+ .++|+|+|.||+|+...+... .++..++...+. .++
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~----~~~~~~~a~~~~------~~~ 139 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS----RQQGEKFAQQIT------GMR 139 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC----HHHHHHHHHhcC------CCE
Confidence 99999999999998765544443 3333333 368899999999985422111 111222222211 246
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |++++|+++++.+
T Consensus 140 ~~etSAktg~--------------gV~e~F~~l~~~~ 162 (202)
T cd04120 140 FCEASAKDNF--------------NVDEIFLKLVDDI 162 (202)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 8999999999 9999999888655
No 158
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=2.6e-16 Score=150.57 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..|+|||||+++++........ ...-++.+.........+...+.+|||||+.+|.......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY----------VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----------CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHh
Confidence 37999999999999999999865221110 11112222222222233457899999999999988778889
Q ss_pred hhccEEEEEEeCCCCCchhHH-HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 141 GMVEGAILVVDAGEGPLAQTK-FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~-~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
+.+|++|+|+|.+++...+.. .++..+... ++|+++|+||+|+..... ..+..++... ..++++
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~------~~~~~~~~~~-------~~~~~~ 137 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV------KAKQITFHRK-------KNLQYY 137 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC------CHHHHHHHHH-------cCCEEE
Confidence 999999999999876554433 333444332 699999999999863221 1111122211 125699
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++||++|. |++++++.|.+.+.
T Consensus 138 e~Sa~~~~--------------~v~~~f~~l~~~~~ 159 (166)
T cd00877 138 EISAKSNY--------------NFEKPFLWLARKLL 159 (166)
T ss_pred EEeCCCCC--------------ChHHHHHHHHHHHH
Confidence 99999999 99999999997764
No 159
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.69 E-value=3.8e-16 Score=150.82 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=106.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe----------ecCceEEEEeCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS----------WRENELNMVDTPG 128 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~----------~~~~~i~iIDTPG 128 (639)
...+|+++|..++|||||++++...........++ +.........+. .....+.||||||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 72 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTV----------GIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG 72 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc----------ceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC
Confidence 35789999999999999999998763322111111 111111111111 1236789999999
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
+..|.......++.+|++|+|+|+.+....+.. .++..... .+.|+++|.||+|+....... .++..++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~----~~~~~~~~~ 148 (180)
T cd04127 73 QERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS----EEQAKALAD 148 (180)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC----HHHHHHHHH
Confidence 999999999999999999999999875433332 34444433 267899999999985432211 122233333
Q ss_pred hcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++ +|++++||++|. |++++++.|++.+
T Consensus 149 ~~~-------~~~~e~Sak~~~--------------~v~~l~~~l~~~~ 176 (180)
T cd04127 149 KYG-------IPYFETSAATGT--------------NVEKAVERLLDLV 176 (180)
T ss_pred HcC-------CeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 332 579999999998 9999999987643
No 160
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.69 E-value=3.4e-16 Score=150.76 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..|+|||||+.+++..........++ +... .....+......++||||||+.+|......++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI----------EDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc----------cceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHh
Confidence 479999999999999999998763322111111 1011 11112222336789999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhHHH-HHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQTKF-VLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~-~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++|+|+|.++....+... ++..+.+ .++|+++|+||+|+.....-. .++...+.... .+|
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~a~~~-------~~~ 140 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT----TEEGRNLAREF-------NCP 140 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC----HHHHHHHHHHh-------CCE
Confidence 9999999999998776555443 3333332 468999999999985432111 11222232222 357
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |++++|+++++.+-
T Consensus 141 ~~e~Sa~~~~--------------~v~~~f~~l~~~~~ 164 (172)
T cd04141 141 FFETSAALRH--------------YIDDAFHGLVREIR 164 (172)
T ss_pred EEEEecCCCC--------------CHHHHHHHHHHHHH
Confidence 9999999998 99999999987653
No 161
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=7.3e-16 Score=148.84 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=107.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..++|||||+.+|...... + .. .|+......+.+++..+.||||||+..|...+..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--------~---~~----~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~ 77 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--------T---TI----PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHY 77 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--------C---cC----CccccceEEEEECCEEEEEEECCCChhhHHHHHHH
Confidence 468999999999999999999643110 0 01 12222233455678899999999999999999999
Q ss_pred HhhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cccc
Q 006610 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~-~~~~ 213 (639)
++.+|++|+|+|+++.. .....++|..+.. .++|+++|+||+|+.+.... .++. +. ++... ....
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~i~----~~---~~~~~~~~~~ 148 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA--AEIT----EK---LGLHSIRDRN 148 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH--HHHH----HH---hCccccCCCc
Confidence 99999999999987643 2334455554432 35799999999998654221 1222 21 12111 1113
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+.++++||++|. |+++++++|.+.+
T Consensus 149 ~~~~~~Sa~~g~--------------gv~e~~~~l~~~~ 173 (175)
T smart00177 149 WYIQPTCATSGD--------------GLYEGLTWLSNNL 173 (175)
T ss_pred EEEEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 457789999999 9999999998764
No 162
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.69 E-value=5.4e-16 Score=144.88 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|.+++|||||+++|+....... .....+.+..............+++||+||+..|......+++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 71 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYR 71 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhc
Confidence 699999999999999999987632111 0111233333333333334578999999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 142 MVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+|++|+|+|+.+...... ..++...... +.|+++++||+|....... ..+++.++... ..++++
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~-------~~~~~~ 140 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV----STEEAQQFAKE-------NGLLFF 140 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc----cHHHHHHHHHH-------cCCeEE
Confidence 9999999999987433222 3445555554 4899999999998521111 12333333332 236799
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
++||+++. |+++++++|.
T Consensus 141 ~~sa~~~~--------------~i~~~~~~i~ 158 (159)
T cd00154 141 ETSAKTGE--------------NVEELFQSLA 158 (159)
T ss_pred EEecCCCC--------------CHHHHHHHHh
Confidence 99999998 9999999885
No 163
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=3e-16 Score=154.61 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+|+++|+.|+|||||+++|+......... ..+.......+.+.+ .+++||||||+.+|......+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYR-------------RTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCC-------------CchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHH
Confidence 48999999999999999998763211111 111111122334444 688999999999998888889
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAV-SEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~-~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+..+|++|+|+|+.+....+ ...++..+.+ .++|+|+|+||+|+... ...... +..+.+. . ...
T Consensus 68 ~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~----~~~~~~~-~-----~~~ 137 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK----DALSTVE-L-----DWN 137 (198)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH----HHHHHHH-h-----hcC
Confidence 99999999999998754333 2222233322 47899999999998542 111111 1111111 0 112
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
++++++||++|. |+++++++|++.+..+
T Consensus 138 ~~~~~~Sa~~g~--------------gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 138 CGFVETSAKDNE--------------NVLEVFKELLRQANLP 165 (198)
T ss_pred CcEEEecCCCCC--------------CHHHHHHHHHHHhhcc
Confidence 468999999999 9999999999887543
No 164
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=5e-16 Score=151.99 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..|+|||||+++|+..........++.+ .. .....+......++||||||+.+|......+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIED----------SY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHh----------hE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHH
Confidence 4899999999999999999865332211111111 00 111112222356899999999999999999999
Q ss_pred hccEEEEEEeCCCCCchhH-HHHHHHHHH------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 142 MVEGAILVVDAGEGPLAQT-KFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt-~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.+|++|+|+|.++...... ..++..+.. .+.|+|+|+||+|+....... .++..++...++ +
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 138 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS----TEEGAALARRLG-------C 138 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC----HHHHHHHHHHhC-------C
Confidence 9999999999877543332 344444432 367999999999985422211 111222222222 4
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++++||++|. |++++++++++.+-
T Consensus 139 ~~~e~SAk~~~--------------~v~~l~~~l~~~l~ 163 (190)
T cd04144 139 EFIEASAKTNV--------------NVERAFYTLVRALR 163 (190)
T ss_pred EEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 69999999999 99999999987653
No 165
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.68 E-value=2.1e-17 Score=140.21 Aligned_cols=77 Identities=26% Similarity=0.269 Sum_probs=72.9
Q ss_pred eeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeecccee
Q 006610 457 KLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (639)
Q Consensus 457 ~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (639)
++|||++++|.| .|.|+++|++|||++ .+++ +++++|+|.+|+++++||+++|+++|+|+|+|++.|+||+
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i---~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~ 77 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKI---EGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYE 77 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEE---ECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcce
Confidence 489999999999 999999999999999 8888 4789999999999999999999999999999999999999
Q ss_pred eccCCC
Q 006610 531 KHRGLL 536 (639)
Q Consensus 531 ~~~g~~ 536 (639)
|+++++
T Consensus 78 ~~~~~~ 83 (85)
T smart00838 78 EVPKSI 83 (85)
T ss_pred ECChhh
Confidence 998654
No 166
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=7.7e-16 Score=149.97 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|..|+|||||+++|....... ... |.......+.+++.+++++||||+..+...+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-----------~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 80 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-----------HQP----TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKD 80 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-----------cCC----ccccceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 44789999999999999999998642110 011 112223345567889999999999999888999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHH----HcCCCcEEEEcCCCCCCC-CHHHHHHHHHHHHHHHHhcCC--CCc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKAL----KYGLRPILLLNKVDRPAV-SEERCDEVESLVFDLFANLGA--TDE 210 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~----~~~lp~IvviNKiD~~~~-~~~~~~~v~~~i~~l~~~~g~--~~~ 210 (639)
++..+|++|+|+|+.+... ......+..+. ..+.|+++|+||+|++.. +. +++.+.+ ++...... ...
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l-~l~~~~~~~~~~~ 156 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYAL-GLTNTTGSKGKVG 156 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHc-CCCcccccccccC
Confidence 9999999999999976432 22333343332 257899999999998643 22 2222211 11000000 000
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
...+-++++||++|. |+++++++|.++
T Consensus 157 ~~~~~i~~~Sa~~~~--------------g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRM--------------GYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCC--------------ChHHHHHHHHhh
Confidence 112448999999998 999999999865
No 167
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=8.5e-16 Score=145.82 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|.+|+|||||+++++..........++. ........+......++||||||+..|......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-----------~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-----------DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-----------heEEEEEEECCEEEEEEEEECCCcccccchHHHHH
Confidence 4799999999999999999987533221111110 01112222222335688999999999999888999
Q ss_pred hhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++|+|+|.++.... ....++..+.+ .++|+++|+||+|+....... .++...+...+ .+|
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~~ 139 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVS----SAEGRALAEEW-------GCP 139 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccC----HHHHHHHHHHh-------CCE
Confidence 999999999998875432 23334444433 478999999999985321101 01111222222 247
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |+.++++++.+.+
T Consensus 140 ~~~~Sa~~~~--------------~v~~l~~~l~~~l 162 (163)
T cd04176 140 FMETSAKSKT--------------MVNELFAEIVRQM 162 (163)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHhc
Confidence 9999999998 9999999998764
No 168
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=8.2e-16 Score=149.46 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=107.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..++|||||+.+|...... ......|. ....+.+++..++||||||+..|...+..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-----------~~~pt~g~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~ 81 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-----------TTIPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-----------cccCCcce----eEEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 468999999999999999999753111 01111122 233466778999999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cccc
Q 006610 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~-~~~~ 213 (639)
++.+|++|+|+|+++.... .....+..... .+.|+++|+||+|++.... . +++.+ .++... ....
T Consensus 82 ~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~--~----~~~~~---~l~l~~~~~~~ 152 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--A----AEITD---KLGLHSLRQRH 152 (181)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC--H----HHHHH---HhCccccCCCc
Confidence 9999999999999864322 22233333321 3689999999999865432 1 12222 223221 1123
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+.++++||++|. |+.+++++|.+.+
T Consensus 153 ~~~~~~Sa~~g~--------------gv~e~~~~l~~~~ 177 (181)
T PLN00223 153 WYIQSTCATSGE--------------GLYEGLDWLSNNI 177 (181)
T ss_pred eEEEeccCCCCC--------------CHHHHHHHHHHHH
Confidence 457789999999 9999999998765
No 169
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=5.5e-16 Score=153.24 Aligned_cols=152 Identities=23% Similarity=0.222 Sum_probs=101.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc-eEEEEeCCCCCCc-hHH-
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHADF-GGE- 135 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~-~i~iIDTPGh~dF-~~e- 135 (639)
..++|+|+|++|+|||||+++|+..... .....+.|+......+.+.+. .++||||||+.+. ...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 107 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY------------AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQL 107 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc------------cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHH
Confidence 3679999999999999999999876211 111123444444455556554 8999999998542 111
Q ss_pred ------HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 136 ------VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 136 ------v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
....+..+|++++|+|+.++...... .+...+.. .+.|+++|+||+|+..... .. ..+..
T Consensus 108 ~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-----~~----~~~~~- 177 (204)
T cd01878 108 VEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-----LE----ERLEA- 177 (204)
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-----HH----HHhhc-
Confidence 11235679999999999877554433 33333333 3689999999999854322 11 11111
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
...|++++||++|. |+++++++|.+.+
T Consensus 178 ------~~~~~~~~Sa~~~~--------------gi~~l~~~L~~~~ 204 (204)
T cd01878 178 ------GRPDAVFISAKTGE--------------GLDELLEAIEELL 204 (204)
T ss_pred ------CCCceEEEEcCCCC--------------CHHHHHHHHHhhC
Confidence 13579999999998 9999999997653
No 170
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=7.9e-16 Score=154.20 Aligned_cols=159 Identities=18% Similarity=0.120 Sum_probs=109.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
....+|+++|..|+|||||+++++........ ...-|.++............+++||||||+.+|.....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~----------~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc----------CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 34579999999999999999998865322111 11123333332222233457899999999999998888
Q ss_pred HHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.+++.+|++|+|+|.++....+.. .|+..+.+ .++|+++|.||+|+...... .+++ .+... ..+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~-----~~~~-~~~~~-------~~~ 147 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQV-TFHRK-------KNL 147 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC-----HHHH-HHHHh-------cCC
Confidence 899999999999999876544433 34343332 47899999999998532110 1111 22221 125
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++++||++|. |++++|++|++.+.
T Consensus 148 ~~~e~SAk~~~--------------~i~~~f~~l~~~~~ 172 (219)
T PLN03071 148 QYYEISAKSNY--------------NFEKPFLYLARKLA 172 (219)
T ss_pred EEEEcCCCCCC--------------CHHHHHHHHHHHHH
Confidence 78999999999 99999999987764
No 171
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=5.4e-16 Score=151.66 Aligned_cols=165 Identities=17% Similarity=0.140 Sum_probs=109.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
++|+++|..|+|||||+.+++..........++. ... .....+......++||||||+.+|......++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~----------~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF----------ENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce----------eee-EEEEEECCEEEEEEEEECCCChhccccccccc
Confidence 5799999999999999999987633221111111 111 11112223346899999999999987777788
Q ss_pred hhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHH--H------HHHHHHHHHHhcCCC
Q 006610 141 GMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCD--E------VESLVFDLFANLGAT 208 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~--~------v~~~i~~l~~~~g~~ 208 (639)
+.+|++|+|+|.++....+.. .++..+... ++|+|+|.||+|+.......-. . ..++..++....+
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 147 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN-- 147 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC--
Confidence 999999999998876544433 345555443 7899999999998654321100 0 0111222222222
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
.++++++||++|. |++++|+++.+.+..|.
T Consensus 148 ----~~~~~e~SAk~~~--------------~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 148 ----ALRYLECSAKLNR--------------GVNEAFTEAARVALNVR 177 (189)
T ss_pred ----CCEEEEccCCcCC--------------CHHHHHHHHHHHHhccc
Confidence 2569999999998 99999999998876554
No 172
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=7.6e-16 Score=145.57 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=101.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCchHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
+|+++|.+|+|||||+++|........ ....+.++ ..+.+ ..+.++||||||+..|...+...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRTVWKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----------cCccCcce----EEEEeCCceEEEEEECCCCHhHHHHHHHHh
Confidence 489999999999999999987532110 11112221 12222 357899999999999988888899
Q ss_pred hhccEEEEEEeCCCCCc-hhHHHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPL-AQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~-~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++|+|+|+.+... .....++.... ..+.|+++|+||+|+..... ..++ ...+...... ....++
T Consensus 66 ~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i----~~~~~~~~~~-~~~~~~ 138 (160)
T cd04156 66 ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEI----TRRFKLKKYC-SDRDWY 138 (160)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHH----HHHcCCcccC-CCCcEE
Confidence 99999999999987542 22223333332 25789999999999854321 1122 1111111111 112467
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
++++||++|. |+++++++|.+
T Consensus 139 ~~~~Sa~~~~--------------gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGE--------------GLAEAFRKLAS 159 (160)
T ss_pred EEecccccCC--------------ChHHHHHHHhc
Confidence 9999999999 99999999864
No 173
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=5.7e-16 Score=151.74 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..|+|||||+++++........ .....+.+.......+......++||||||+.+|.......++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN---------FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC---------cCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHcc
Confidence 6999999999999999999865321100 0000122222222223333468999999999999888888999
Q ss_pred hccEEEEEEeCCCCCchh-HHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 142 MVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+|++|+|+|+.+....+ ...++..+.+. ++|+++|+||+|+...+... .++...+...++ +|++
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~----~~~~~~l~~~~~-------~~~~ 141 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVK----REDGERLAKEYG-------VPFM 141 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccC----HHHHHHHHHHcC-------CeEE
Confidence 999999999998754332 23344444433 67999999999985322111 112223322222 5799
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
++||++|. |+++++++|.+.++..
T Consensus 142 e~Sa~~~~--------------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 142 ETSAKTGL--------------NVELAFTAVAKELKHR 165 (191)
T ss_pred EEeCCCCC--------------CHHHHHHHHHHHHHHh
Confidence 99999999 9999999999887643
No 174
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.68 E-value=9.9e-16 Score=149.90 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=110.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev 136 (639)
...+|+++|..++|||||+.++...... .+....++.......+..+ ..+++||||||+.+|...+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~------------~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE------------SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC------------CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 4689999999999999999999864221 1111122222222333333 4789999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
..+++.+|++|||+|.++....+ ...++..+.+ .++|+|+|.||+|+...+... .++..++....+
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~----~~~~~~~a~~~~------- 141 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA----TEQAQAYAERNG------- 141 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC----HHHHHHHHHHcC-------
Confidence 99999999999999988754433 3445555544 378899999999985432211 223334433332
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |++++|+.|.+.+
T Consensus 142 ~~~~e~SAk~g~--------------~V~~~F~~l~~~i 166 (189)
T cd04121 142 MTFFEVSPLCNF--------------NITESFTELARIV 166 (189)
T ss_pred CEEEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 569999999999 9999999998755
No 175
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.68 E-value=9.1e-16 Score=146.78 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|.+|+|||||+++++..........++ +-. ......+......+.+|||||+.+|.......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~----------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI----------EDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----------hhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHH
Confidence 369999999999999999998664322111111 100 111112222336789999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhHH-HHHHHH----HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQTK-FVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~-~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++|+|+|..+....+.. .+.... ...++|+++++||+|+....... .++..++....+ .+|
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~----~~~~~~~~~~~~------~~~ 140 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS----REDGVSLSQQWG------NVP 140 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC----HHHHHHHHHHcC------Cce
Confidence 999999999998865333222 222222 23478999999999985433211 112222222222 257
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |++++|++++.++.
T Consensus 141 ~~~~SA~~~~--------------~i~~~f~~i~~~~~ 164 (168)
T cd04177 141 FYETSARKRT--------------NVDEVFIDLVRQII 164 (168)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHHHh
Confidence 9999999998 99999999987654
No 176
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.68 E-value=8.3e-16 Score=151.65 Aligned_cols=158 Identities=20% Similarity=0.249 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev 136 (639)
...+|+++|..|+|||||+++|+........ ....++.+ ....+.+. ...++||||||+..|...+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~----------~~t~~~~~--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSY----------ITTIGVDF--KIRTVEINGERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------Ccccccee--EEEEEEECCEEEEEEEEeCCCchhHHHHH
Confidence 3579999999999999999999865321111 11112222 22333333 3578999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
..+++.+|++|+|+|+++....+ ...++...... ..|+++|+||+|+....... .++...+.... .
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~----~~~~~~~~~~~-------~ 141 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE----TEDAYKFAGQM-------G 141 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC----HHHHHHHHHHc-------C
Confidence 99999999999999998754333 23344444332 57889999999986432211 12222233222 2
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |++++|++|.+.+.
T Consensus 142 ~~~~e~Sa~~~~--------------gi~~lf~~l~~~~~ 167 (199)
T cd04110 142 ISLFETSAKENI--------------NVEEMFNCITELVL 167 (199)
T ss_pred CEEEEEECCCCc--------------CHHHHHHHHHHHHH
Confidence 569999999999 99999999987764
No 177
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.68 E-value=8.5e-16 Score=144.86 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccccccccccee--EeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGIT--IASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiT--i~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+|+++|..|+|||||+++|+....... ..+.++ .......+......+++|||||+..|.......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 69 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK------------HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIY 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC------------cCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHH
Confidence 799999999999999999997632211 111111 111122222234579999999999998888888
Q ss_pred HhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++++|+|+.++...+.. .++..+.. .++|+++|+||+|+....... .+++..+.... .++
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~----~~~~~~~~~~~-------~~~ 138 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS----KSEAEEYAKSV-------GAK 138 (162)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC----HHHHHHHHHHc-------CCE
Confidence 9999999999999876544333 33333332 368999999999986432211 12222233322 246
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++|+++|. |++++++++.+.+
T Consensus 139 ~~~~s~~~~~--------------gi~~~~~~l~~~~ 161 (162)
T cd04123 139 HFETSAKTGK--------------GIEELFLSLAKRM 161 (162)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHh
Confidence 8999999998 9999999998754
No 178
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.68 E-value=4.1e-16 Score=149.65 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=104.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.++|||||+++++..........++. ........+....+.++||||||+.+|.......++
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-----------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-----------DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----------eeeEEEEEECCEEEEEEEEeCCCcccccccccccCC
Confidence 799999999999999999987633211111111 011111222333466899999999999887778889
Q ss_pred hccEEEEEEeCCCCCchhHH--HHHHHHH--HcCCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhcCCC
Q 006610 142 MVEGAILVVDAGEGPLAQTK--FVLAKAL--KYGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGAT 208 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~--~~l~~~~--~~~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~g~~ 208 (639)
.+|++|+|+|..+.-..+.. .++..+. ..++|+++|+||+|+....... ..+ .++...+...++.
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~- 148 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTL-ARLNDMKEKPVTVEQGQKLAKEIGA- 148 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhH-HHHhhccCCCCCHHHHHHHHHHcCC-
Confidence 99999999998875443322 2333333 3478999999999985432211 100 1122233333332
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+++++||++|. |++++|+.+++.+
T Consensus 149 -----~~~~e~Sa~~~~--------------gi~~~f~~~~~~~ 173 (174)
T cd04135 149 -----HCYVECSALTQK--------------GLKTVFDEAILAI 173 (174)
T ss_pred -----CEEEEecCCcCC--------------CHHHHHHHHHHHh
Confidence 358999999999 9999999998653
No 179
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=8.2e-16 Score=143.85 Aligned_cols=152 Identities=24% Similarity=0.269 Sum_probs=104.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhh
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGM 142 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~ 142 (639)
|+|+|+.|+|||||+++|........ ..+ |+......+.+.+..+.+|||||+..|...+..+++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~------------~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED------------TIP--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRG 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC------------ccC--CCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 79999999999999999986532111 111 1122223345567889999999999999999999999
Q ss_pred ccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 143 VEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 143 aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
+|++++|+|+.+.. ..+....+..+.. .++|+++|+||+|...... ..++. +.+..... ....++++
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~----~~~~~~~~--~~~~~~~~ 139 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELI----EQMNLKSI--TDREVSCY 139 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHH----HHhCcccc--cCCceEEE
Confidence 99999999987642 2333344444432 5789999999999865322 11111 11110001 11236799
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
++|+++|. |+++++++|.+
T Consensus 140 ~~Sa~~~~--------------gi~~l~~~l~~ 158 (159)
T cd04159 140 SISCKEKT--------------NIDIVLDWLIK 158 (159)
T ss_pred EEEeccCC--------------ChHHHHHHHhh
Confidence 99999998 99999999865
No 180
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=1.4e-15 Score=141.47 Aligned_cols=154 Identities=25% Similarity=0.279 Sum_probs=110.1
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCCch-------HHH
Q 006610 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFG-------GEV 136 (639)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~dF~-------~ev 136 (639)
|+|+.|+|||||+++|+..... .....++.|.......+.+. ...+.||||||+.++. ...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~ 69 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA-----------IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA 69 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc-----------ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH
Confidence 5899999999999999865221 12233455555555555554 7799999999988765 345
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
...++.+|++++|+|+..........++......+.|+++|+||+|+...+. .....+ ... .... .....|+
T Consensus 70 ~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~-~~~-~~~~----~~~~~~~ 141 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE--EEELLE-LRL-LILL----LLLGLPV 141 (163)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh--HHHHHH-HHH-hhcc----cccCCce
Confidence 5688999999999999998777777667777788999999999999864322 111111 000 0011 1123689
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
+++||+++. |++++++++.+.
T Consensus 142 ~~~sa~~~~--------------~v~~l~~~l~~~ 162 (163)
T cd00880 142 IAVSALTGE--------------GIDELREALIEA 162 (163)
T ss_pred EEEeeeccC--------------CHHHHHHHHHhh
Confidence 999999998 999999999765
No 181
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.68 E-value=4.5e-17 Score=135.90 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=69.4
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeec
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
|||++++|.| +|+|+++|++|||++ .+++ +++++|+|.+|+++++||+++|+++|+|+|.|++.|+||+|+
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i---~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTI---VDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPV 77 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEE---eceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEEC
Confidence 8999999999 999999999999999 8888 578999999999999999999999999999999999999998
Q ss_pred c
Q 006610 533 R 533 (639)
Q Consensus 533 ~ 533 (639)
+
T Consensus 78 ~ 78 (78)
T cd04097 78 P 78 (78)
T ss_pred c
Confidence 4
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=3.9e-16 Score=172.22 Aligned_cols=149 Identities=23% Similarity=0.250 Sum_probs=114.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH----
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE---- 135 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e---- 135 (639)
..+|+++|++|+|||||+++|++.. ........|.|.+.....+.++++.++||||||+.++...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~-----------~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~ 283 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEE-----------RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI 283 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-----------CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH
Confidence 3689999999999999999998752 1122334577777777778888999999999999876543
Q ss_pred ----HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 ----VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 ----v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
....+..+|++|+|+|+.++...+...+|.. ..+.|+++|+||+|+..... .. . .
T Consensus 284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~-----~~-------~-------~ 342 (449)
T PRK05291 284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEID-----LE-------E-------E 342 (449)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccch-----hh-------h-------c
Confidence 2346788999999999988876666666655 45789999999999854221 00 0 1
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
...+++++||++|. |+++|+++|.+.++.
T Consensus 343 ~~~~~i~iSAktg~--------------GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 343 NGKPVIRISAKTGE--------------GIDELREAIKELAFG 371 (449)
T ss_pred cCCceEEEEeeCCC--------------CHHHHHHHHHHHHhh
Confidence 12468999999999 999999999988753
No 183
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=8.2e-16 Score=146.91 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=105.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhh
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGM 142 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~ 142 (639)
|+++|..|+|||||+++|.......... .|+......+.+++.++.||||||+.+|...+..+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~--------------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV--------------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSG 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc--------------ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhh
Confidence 7899999999999999998653211111 11111224466778899999999999999999999999
Q ss_pred ccEEEEEEeCCCCCc-hhHHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEec
Q 006610 143 VEGAILVVDAGEGPL-AQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (639)
Q Consensus 143 aD~allVVDa~~g~~-~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~ 219 (639)
+|++|+|+|+++... ...+.++..+.. .++|+++|+||+|+..... ..++. +.+...... ....++++++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~~-~~~~~~~~~~ 140 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS--VQEIH----KELELEPIA-RGRRWILQGT 140 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC--HHHHH----HHhCChhhc-CCCceEEEEe
Confidence 999999999887542 233344444432 5789999999999865432 11111 111111111 1224678888
Q ss_pred ccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
||++.- +.....|++++|+.+++
T Consensus 141 Sa~~~~--------s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 141 SLDDDG--------SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eecCCC--------ChhHHHHHHHHHHHHhc
Confidence 888832 11222399999998864
No 184
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.67 E-value=5.2e-16 Score=147.82 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-chHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-FGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-F~~ev~~~l 140 (639)
+|+++|..|+|||||+++++..........+. .+.......+.++...++||||||+.. +.....+.+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~-----------~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNL-----------ESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCCh-----------HHhceEEEEECCEEEEEEEEECCCCcccccchHHHHH
Confidence 58999999999999999998642211111100 011222233344456799999999985 456778899
Q ss_pred hhccEEEEEEeCCCCCchhH-HHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQT-KFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt-~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+.+|++|+|+|+.+....+. ..++..+.. .++|+|+|+||+|+...+.-. .++...+....+ +
T Consensus 70 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 138 (165)
T cd04146 70 RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS----TEEGEKLASELG-------C 138 (165)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC----HHHHHHHHHHcC-------C
Confidence 99999999999987644332 233333332 378999999999984321101 111222222222 4
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|++++||++|. .|++++|+.+++.+
T Consensus 139 ~~~e~Sa~~~~-------------~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDY-------------DGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCc-------------hhHHHHHHHHHHHH
Confidence 69999999983 18999999998754
No 185
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.67 E-value=7.7e-16 Score=148.01 Aligned_cols=159 Identities=20% Similarity=0.160 Sum_probs=105.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..++|||||+++++..........+ -+.........+......++||||||+.+|.......++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t----------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKAT----------IGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----------eeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhc
Confidence 6899999999999999999976432211111 112222222222222467999999999999998999999
Q ss_pred hccEEEEEEeCCCCCchh-HHHHHHHHHHcC----CCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPLAQ-TKFVLAKALKYG----LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~q-t~~~l~~~~~~~----lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++|+|+|+.+..... ...++....+.. .|+|+|.||+|+...+.. ....++...+...++ .++
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~--~~~~~~~~~~~~~~~-------~~~ 142 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY--ALMEQDAIKLAAEMQ-------AEY 142 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccc--cccHHHHHHHHHHcC-------CeE
Confidence 999999999997643222 334454444432 457899999998543210 101122223333332 468
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |++++++.|.+.+.
T Consensus 143 ~e~Sa~~g~--------------~v~~lf~~l~~~~~ 165 (170)
T cd04108 143 WSVSALSGE--------------NVREFFFRVAALTF 165 (170)
T ss_pred EEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 999999999 99999999987653
No 186
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.67 E-value=2.3e-16 Score=133.30 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=76.8
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
|.++|||+.++++.|+++++||++|+|++||.|++.... +.++|.+|+.++|.++.++++|.||||+++.|++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 73 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG-------KKERISRLLQPFADQYQEIPSLSAGNIGVITGLK 73 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCC-------CEEEeeEEEEEECCCceECCeeCCCCEEEEECCC
Confidence 578999999999999999999999999999999987532 4578999999999999999999999999999999
Q ss_pred CCCcCCeeee
Q 006610 343 KPSIGHTVAN 352 (639)
Q Consensus 343 ~~~~Gdtl~~ 352 (639)
++++|||||.
T Consensus 74 ~~~~Gdtl~~ 83 (83)
T cd04092 74 QTRTGDTLVT 83 (83)
T ss_pred CcccCCEEeC
Confidence 9999999984
No 187
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=9.4e-16 Score=151.23 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCch----HH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG----GE 135 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~----~e 135 (639)
+|+|+|..|+|||||+++++....... ....++.......+.+++ +.++||||||+.+|. .+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~------------~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e 69 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE------------YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQE 69 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc------------cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhH
Confidence 799999999999999999987532211 111111111112233444 678899999987652 22
Q ss_pred ----HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 136 ----VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 136 ----v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
...+++.+|++|+|+|+++....+. ..+++.+.+ .++|+++|+||+|+...+... .+++.++..+
T Consensus 70 ~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~----~~~~~~~~~~ 145 (198)
T cd04142 70 WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP----RHVLSVLVRK 145 (198)
T ss_pred HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc----HHHHHHHHHH
Confidence 3456789999999999987644332 233333332 468999999999995432211 1112222221
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
. ..+|++++||++|. |+++||+.+++.+-
T Consensus 146 ~------~~~~~~e~Sak~g~--------------~v~~lf~~i~~~~~ 174 (198)
T cd04142 146 S------WKCGYLECSAKYNW--------------HILLLFKELLISAT 174 (198)
T ss_pred h------cCCcEEEecCCCCC--------------CHHHHHHHHHHHhh
Confidence 1 13679999999999 99999999987664
No 188
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.4e-15 Score=143.38 Aligned_cols=164 Identities=21% Similarity=0.185 Sum_probs=129.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|..++|||||+.++++..+...+..++ |+...++...++-..++++||||+|++.|...+..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI----------GiDFlskt~~l~d~~vrLQlWDTAGQERFrslips 90 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI----------GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 90 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccccccee----------eeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhh
Confidence 34799999999999999999999997766655554 77777777777666789999999999999999999
Q ss_pred HHhhccEEEEEEeCC-CCCchhHHHHHHHHHHcCC----CcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAG-EGPLAQTKFVLAKALKYGL----RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~l----p~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
++|.+..+|+|+|.+ .....+|..|+.-++..+- -+++|.||-|+.+-+.-. .++-....+++++
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs----~eEg~~kAkel~a------ 160 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS----IEEGERKAKELNA------ 160 (221)
T ss_pred hccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh----HHHHHHHHHHhCc------
Confidence 999999999999955 4567889999988876533 245789999995432211 1111233344444
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~ 257 (639)
-++.+||+.|. |+.+||..|...+|.+..
T Consensus 161 -~f~etsak~g~--------------NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 161 -EFIETSAKAGE--------------NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred -EEEEecccCCC--------------CHHHHHHHHHHhccCccc
Confidence 28899999999 999999999999998754
No 189
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=7.8e-16 Score=147.57 Aligned_cols=153 Identities=16% Similarity=0.234 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+|+|+.|+|||||+++|...... ......|++ ...+.+.+..+++|||||+..|...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-----------~~~~t~g~~----~~~i~~~~~~~~~~D~~G~~~~~~~~~~~ 78 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-----------HITPTQGFN----IKTVQSDGFKLNVWDIGGQRAIRPYWRNY 78 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-----------ccCCCCCcc----eEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 578999999999999999999864210 011112322 23455678899999999999999889999
Q ss_pred HhhccEEEEEEeCCCCCc-hhHHHHHHHH----HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cccc
Q 006610 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~-~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~-~~~~ 213 (639)
++.+|++++|+|+.+... ......+... ...++|+++++||+|+..... ..++. + .++... ....
T Consensus 79 ~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~----~---~l~~~~~~~~~ 149 (173)
T cd04155 79 FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIA----E---ALNLHDLRDRT 149 (173)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHH----H---HcCCcccCCCe
Confidence 999999999999876321 2223333322 345789999999999854321 12222 2 122211 1113
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
++++++||++|. |+++++++|++
T Consensus 150 ~~~~~~Sa~~~~--------------gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGE--------------GLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCC--------------CHHHHHHHHhc
Confidence 568899999999 99999999865
No 190
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.67 E-value=7.8e-16 Score=150.67 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|.+++|||||+++|+....... +.....|.+.......+......++||||||+.+|.......++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVG---------PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCc---------CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcC
Confidence 699999999999999999987532110 01111122222222333323356889999999998888888889
Q ss_pred hccEEEEEEeCCCCCchh-HHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH-HHHHHHHHHhcCCCCccccccEE
Q 006610 142 MVEGAILVVDAGEGPLAQ-TKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV-ESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~q-t~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v-~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+|++|+|+|..+....+ ...++..+... +.|+++|+||+|+....... .++ .+++.++.... .++++
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~-~~v~~~~~~~~~~~~-------~~~~~ 144 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSL-RQVDFHDVQDFADEI-------KAQHF 144 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccccc-CccCHHHHHHHHHHc-------CCeEE
Confidence 999999999987754332 23455555544 68999999999985422100 011 12233333322 24689
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++||++|. |+++|+++|.+.+
T Consensus 145 ~~Sa~~~~--------------gv~~l~~~i~~~~ 165 (193)
T cd04118 145 ETSSKTGQ--------------NVDELFQKVAEDF 165 (193)
T ss_pred EEeCCCCC--------------CHHHHHHHHHHHH
Confidence 99999998 9999999998765
No 191
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.67 E-value=4.6e-17 Score=136.35 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=67.9
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-CEEEEEEEeccccc-cchhhhccccceeceEeeeecccee
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYE 530 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (639)
|||++++|.| +|+||++|++|||++ .+|+ + ++++|+|.+|+|++ .||+++|+++|+|+|+|++.|+||+
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i---~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~ 77 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQ---KDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYR 77 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEE---eccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccc
Confidence 8999999999 999999999999999 9998 4 59999999999999 5999999999999999999999999
Q ss_pred ec
Q 006610 531 KH 532 (639)
Q Consensus 531 ~~ 532 (639)
|.
T Consensus 78 ~~ 79 (80)
T cd03709 78 ES 79 (80)
T ss_pred cC
Confidence 84
No 192
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.4e-15 Score=161.07 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=112.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCC------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHAD------ 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~d------ 131 (639)
-+..|+|+|.+++|||||+++|+... .......+.|+......+.+ ++..++|+||||..+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~------------~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~ 224 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK------------PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA 224 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC------------CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc
Confidence 36789999999999999999998641 12223346788877778888 457899999999743
Q ss_pred -chHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 132 -FGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 132 -F~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
+...+.+.+..+|++|+|+|+++.. ..+...++..+.. .+.|+++|+||+|+...... . .+.....+..
T Consensus 225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~--~~~~~~~~~~ 300 (335)
T PRK12299 225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE--R--EKRAALELAA 300 (335)
T ss_pred cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH--H--HHHHHHHHHh
Confidence 4456677788899999999987543 2333344444443 36799999999998643221 1 1111111222
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
. .++++++||+++. |+++|+++|.+.++.
T Consensus 301 ~-------~~~i~~iSAktg~--------------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 301 L-------GGPVFLISAVTGE--------------GLDELLRALWELLEE 329 (335)
T ss_pred c-------CCCEEEEEcCCCC--------------CHHHHHHHHHHHHHh
Confidence 1 2579999999999 999999999988754
No 193
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.66 E-value=1.8e-15 Score=147.22 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..++|||||+.+++.......... .-|..+..+...+......++||||+|+..|...+..+++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~----------T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQ----------TLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------ccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCc
Confidence 699999999999999999987633221111 1122222222233223468999999999999988889999
Q ss_pred hccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVS-EERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~-~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|+++....+. ..++..+.+. ..| |+|+||+|+.... ......+.++..++....+ +++
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-------~~~ 143 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-------APL 143 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-------CEE
Confidence 9999999999887544333 2455555442 345 7889999985321 1111122333334333332 468
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |++++|+++.+.+.
T Consensus 144 ~e~SAk~g~--------------~v~~lf~~l~~~l~ 166 (182)
T cd04128 144 IFCSTSHSI--------------NVQKIFKIVLAKAF 166 (182)
T ss_pred EEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 999999999 99999999987764
No 194
>PLN03108 Rab family protein; Provisional
Probab=99.66 E-value=1.9e-15 Score=150.52 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+|+|+.++|||||+++|+......... ..-+.+.......+......++||||||+.+|......
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~----------~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~ 74 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC----------CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH
Confidence 45799999999999999999998753221110 01122222222233223357899999999999988889
Q ss_pred HHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.++.+|++|+|+|+++....+.. .++..+.. .++|++++.||+|+....... .++...+.... .+
T Consensus 75 ~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~ 143 (210)
T PLN03108 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS----TEEGEQFAKEH-------GL 143 (210)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC----HHHHHHHHHHc-------CC
Confidence 99999999999999875433332 33433332 368899999999986432211 11222233322 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|++++||+++. |++++|+++++.+
T Consensus 144 ~~~e~Sa~~~~--------------~v~e~f~~l~~~~ 167 (210)
T PLN03108 144 IFMEASAKTAQ--------------NVEEAFIKTAAKI 167 (210)
T ss_pred EEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999998887765
No 195
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=1.7e-15 Score=151.43 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=110.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+...+|+++|+.|+|||||+++|+........ ....|.........+......++||||||+..|.....
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~----------~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~ 79 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLES----------KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS 79 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence 34679999999999999999999865221110 11112222222233333346899999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|..+....+. ..++..+.. .++|+++|+||+|+....... . ++...+.... .
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-~---~~~~~l~~~~-------~ 148 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVA-E---EDGQALAEKE-------G 148 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCC-H---HHHHHHHHHc-------C
Confidence 99999999999999876544333 345555544 378999999999985422110 1 1111222211 3
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+|++++||++|. |++++++.|+..+..
T Consensus 149 ~~~~e~SA~~g~--------------~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEAT--------------NVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHHHH
Confidence 689999999999 999999999887754
No 196
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.66 E-value=3.8e-17 Score=139.84 Aligned_cols=79 Identities=32% Similarity=0.260 Sum_probs=72.5
Q ss_pred ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc---CCEEEEEEEeccccccchhhhccccceeceEeeeeccc
Q 006610 456 VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLK 528 (639)
Q Consensus 456 ~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~ 528 (639)
+++|||++++|.+ .|.|+++|++|||++ .+++ ++++.|+|.+|+++++||+++|+++|+|+|.|++.|+|
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i---~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~ 77 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEI---LSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSG 77 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EE---EEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEE---EechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECe
Confidence 4799999999999 999999999999999 8877 48999999999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 006610 529 YEKHRGLLG 537 (639)
Q Consensus 529 y~~~~g~~~ 537 (639)
|+|+++++.
T Consensus 78 y~~~~~~~~ 86 (89)
T PF00679_consen 78 YRPVPGDIL 86 (89)
T ss_dssp EEEESHHHH
T ss_pred eEECCCChh
Confidence 999987654
No 197
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.66 E-value=8.6e-17 Score=134.19 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=69.2
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeec
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
|||++++|+| .|+|+++|++|||++ .+++ +++++|+|.+|+++++||+++|+++|+|+|.|++.|+||+|+
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i---~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATF---EDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEe---eCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEEC
Confidence 8999999999 999999999999999 9888 489999999999999999999999999999999999999997
Q ss_pred c
Q 006610 533 R 533 (639)
Q Consensus 533 ~ 533 (639)
.
T Consensus 78 ~ 78 (78)
T cd03711 78 H 78 (78)
T ss_pred C
Confidence 3
No 198
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=2.3e-15 Score=146.37 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=105.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..++|||||+.++...... .... |+......+.+.+..++||||||+..|...+..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-----------~~~~----T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 81 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-----------TTIP----TIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHY 81 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-----------ccCC----ccccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence 368999999999999999999643111 1111 1122223455678899999999999999889999
Q ss_pred HhhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-Ccccc
Q 006610 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-DEQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~-~~~~~ 213 (639)
++.+|++|+|+|+++.- .......+..... .+.|+++|+||.|+...... .++. + .++.. .....
T Consensus 82 ~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~i~----~---~l~~~~~~~~~ 152 (182)
T PTZ00133 82 YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST--TEVT----E---KLGLHSVRQRN 152 (182)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH--HHHH----H---HhCCCcccCCc
Confidence 99999999999987532 1222333333322 35789999999998653221 1221 1 12221 11123
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++.+||++|. |+++++++|.+.+
T Consensus 153 ~~~~~~Sa~tg~--------------gv~e~~~~l~~~i 177 (182)
T PTZ00133 153 WYIQGCCATTAQ--------------GLYEGLDWLSANI 177 (182)
T ss_pred EEEEeeeCCCCC--------------CHHHHHHHHHHHH
Confidence 567889999999 9999999998754
No 199
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=1.8e-15 Score=146.27 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee--cCceEEEEeCCCCCCchHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW--RENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~--~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
++|+++|++|+|||||+++++..........+. .......+.+ .++.++||||||+.+|......
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~-------------~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI-------------ENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcch-------------hhhEEEEEEECCEEEEEEEEECCChHhhHHHHHH
Confidence 689999999999999999999653321111110 0000112222 2467899999999999988889
Q ss_pred HHhhccEEEEEEeCCCCCchhHH-HHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
++..+|++++|+|..+....+.. .++....+ .++|+|+|+||+|+...+... .++...+...++
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~------- 137 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVS----TEEGKELAESWG------- 137 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccC----HHHHHHHHHHcC-------
Confidence 99999999999998876544333 33344433 467999999999985422111 111222222222
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+|++++||++|. |+.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~~--------------gv~~l~~~l~~~~ 162 (180)
T cd04137 138 AAFLESSARENE--------------NVEEAFELLIEEI 162 (180)
T ss_pred CeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999998765
No 200
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.65 E-value=1.6e-15 Score=144.73 Aligned_cols=158 Identities=14% Similarity=0.092 Sum_probs=103.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..|+|||||+++|+..........+. .........+....+.+++|||||+.+|.......++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV-----------FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-----------eeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcC
Confidence 79999999999999999999763311111111 1111122223334568999999999988766667778
Q ss_pred hccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHH------H-HHHHHHHHHHhcCCCCc
Q 006610 142 MVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCD------E-VESLVFDLFANLGATDE 210 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~------~-v~~~i~~l~~~~g~~~~ 210 (639)
.+|++++|+|+.+....+. ..++...... ++|+++|+||+|+......... . -.++...+....+.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 147 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA--- 147 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC---
Confidence 8999999999987433222 2344444433 5899999999998654431100 0 01222233333322
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
.+++++||++|. |++++++.|++
T Consensus 148 ---~~~~~~Sa~~~~--------------gi~~l~~~i~~ 170 (171)
T cd00157 148 ---IGYMECSALTQE--------------GVKEVFEEAIR 170 (171)
T ss_pred ---eEEEEeecCCCC--------------CHHHHHHHHhh
Confidence 369999999999 99999999875
No 201
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.65 E-value=1.4e-15 Score=147.99 Aligned_cols=162 Identities=15% Similarity=0.043 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe-ecCceEEEEeCCCCCCchHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~-~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.+|+++|..|+|||||+++|+..........++ +..+ ....... .....+.||||||+.+|......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~----------~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTV----------FENY-VTNIQGPNGKIIELALWDTAGQEEYDRLRPLS 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCee----------eeee-EEEEEecCCcEEEEEEEECCCchhHHHHHHHh
Confidence 379999999999999999998763321111111 1111 0111111 123578999999999998888888
Q ss_pred HhhccEEEEEEeCCCCCchhHH-H-HHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTK-F-VLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~-~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++|+|+|+++....+.. . ++..... .++|+|+|+||+|+.........-..++..++...++. .+
T Consensus 70 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~------~~ 143 (187)
T cd04132 70 YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA------FA 143 (187)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC------cE
Confidence 9999999999999875443333 2 3333332 37899999999998543210000001222333333332 26
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |++++++.+.+.+.
T Consensus 144 ~~e~Sa~~~~--------------~v~~~f~~l~~~~~ 167 (187)
T cd04132 144 YLECSAKTME--------------NVEEVFDTAIEEAL 167 (187)
T ss_pred EEEccCCCCC--------------CHHHHHHHHHHHHH
Confidence 8999999999 99999999887654
No 202
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=2e-15 Score=141.96 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=105.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+|+|+.|+|||||+++|+..........+. + ........+....+++++||+||+.++.......++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTI----------E-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCCh----------h-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHh
Confidence 58999999999999999998763221111110 0 011111222222468999999999999999999999
Q ss_pred hccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|..+... .....++..... .+.|+++|+||+|+...... ..+++..+....+ .|+
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~-------~~~ 138 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQV----SKEEGKALAKEWG-------CPF 138 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccccee----cHHHHHHHHHHcC-------CcE
Confidence 9999999999876432 223344444433 37899999999998652221 1123333333332 579
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++|++++. |+++++++|.+++
T Consensus 139 ~~~S~~~~~--------------~i~~l~~~l~~~i 160 (160)
T cd00876 139 IETSAKDNI--------------NIDEVFKLLVREI 160 (160)
T ss_pred EEeccCCCC--------------CHHHHHHHHHhhC
Confidence 999999998 9999999998753
No 203
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.65 E-value=1.8e-15 Score=146.40 Aligned_cols=163 Identities=14% Similarity=0.042 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|+.++|||||+.+++..........++. .+. .....+.....+++||||+|+.+|......++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~----------~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF----------DNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcce----------eee-EEEEEECCEEEEEEEEECCCCccccccchhhc
Confidence 4799999999999999999997644322222221 111 11122223347899999999999998888899
Q ss_pred hhccEEEEEEeCCCCCchhHH--HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHH------HHHHHHHHHHHHhcCCCCc
Q 006610 141 GMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERC------DEVESLVFDLFANLGATDE 210 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~------~~v~~~i~~l~~~~g~~~~ 210 (639)
+.+|++|||+|.++....+.. .|+..+.. .++|+|+|.||+|+........ .-..++..++....+.
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--- 147 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA--- 147 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC---
Confidence 999999999998876554443 45555543 3689999999999854211000 0011223333333332
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.+++++||++|. |++++|+.+++.+-.
T Consensus 148 ---~~~~E~SAk~~~--------------nV~~~F~~~~~~~~~ 174 (176)
T cd04133 148 ---AAYIECSSKTQQ--------------NVKAVFDAAIKVVLQ 174 (176)
T ss_pred ---CEEEECCCCccc--------------CHHHHHHHHHHHHhc
Confidence 258999999999 999999999986543
No 204
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.65 E-value=1.4e-15 Score=146.83 Aligned_cols=159 Identities=15% Similarity=0.087 Sum_probs=105.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..|+|||||+.+++..........++.+. ......+..+...++||||||+.+|......++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-----------~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-----------YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-----------eEEEEEECCEEEEEEEEECCCchhhhhhhhhhc
Confidence 479999999999999999998753322222221111 111122333446789999999999988888899
Q ss_pred hhccEEEEEEeCCCCCchhHH--HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhcCC
Q 006610 141 GMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGA 207 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~g~ 207 (639)
+.+|++|+|+|.++....+.. .++..+.. .++|+|+|.||+|+..... ..+.+ .++..++..+++.
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 149 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh-hHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 999999999999875444443 23343333 2689999999999854221 11111 1122233333331
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++++++||++|. |++++|+.+.+.
T Consensus 150 ------~~~~e~Sa~~~~--------------~i~~~f~~l~~~ 173 (174)
T cd01871 150 ------VKYLECSALTQK--------------GLKTVFDEAIRA 173 (174)
T ss_pred ------cEEEEecccccC--------------CHHHHHHHHHHh
Confidence 469999999999 999999998764
No 205
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.65 E-value=3.8e-15 Score=145.97 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=109.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..++|||||+.+++..........++ +... .....+..+.+.++||||||+..|......++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV----------FDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSY 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCce----------Eeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhc
Confidence 589999999999999999998764322221111 1111 11112333346899999999999998888899
Q ss_pred hhccEEEEEEeCCCCCchhHHH-HH-HHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHH---------HHHHHHHHhcCC
Q 006610 141 GMVEGAILVVDAGEGPLAQTKF-VL-AKALK--YGLRPILLLNKVDRPAVSEERCDEVE---------SLVFDLFANLGA 207 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~-~l-~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~---------~~i~~l~~~~g~ 207 (639)
+.+|++|+|+|.++....+... .| ..+.. .++|+++|.||.|+.+.... ...+. ++...+...++
T Consensus 73 ~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~-~~~~~~~~~~~v~~~~~~~~a~~~~- 150 (191)
T cd01875 73 PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT-LKKLKEQGQAPITPQQGGALAKQIH- 150 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh-HHHHhhccCCCCCHHHHHHHHHHcC-
Confidence 9999999999988765444432 23 33332 37899999999998543210 01110 11222222222
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
.++++++||++|. |++++|+.+++.+-.|.
T Consensus 151 -----~~~~~e~SAk~g~--------------~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 151 -----AVKYLECSALNQD--------------GVKEVFAEAVRAVLNPT 180 (191)
T ss_pred -----CcEEEEeCCCCCC--------------CHHHHHHHHHHHHhccc
Confidence 1479999999999 99999999998775553
No 206
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=2.3e-15 Score=150.37 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---CceEEEEeCCCCCCchHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~---~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+|+++|..++|||||+++|+....... ...-++.+.....+.+. ...++||||||+..|......
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~------------~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~ 69 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKS------------YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDK 69 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC------------CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHH
Confidence 699999999999999999986532211 11122222222233332 468999999999999988899
Q ss_pred HHhhccEEEEEEeCCCCCch-hHHHHHHHHHHc------CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 139 VVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY------GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~------~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
.++.+|++|+|+|+++.... ....++..+.+. +.|+++|.||+|+...+... .++...+....+
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~----~~~~~~~~~~~~----- 140 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK----DDKHARFAQANG----- 140 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC----HHHHHHHHHHcC-----
Confidence 99999999999998865332 233444544432 35678999999986422211 112222333222
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |++++|++|.+.+-
T Consensus 141 --~~~~~iSAktg~--------------gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 --MESCLVSAKTGD--------------RVNLLFQQLAAELL 166 (215)
T ss_pred --CEEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 468999999999 99999999998764
No 207
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.4e-15 Score=144.05 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=114.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccccccccc--ceeEeeeeEEEeecCceEEEEeCCCCCCchH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER--GITIASKVTGISWRENELNMVDTPGHADFGG 134 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~er--giTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ 134 (639)
.+...+|.++|..|+|||.|+.++...+. .++... |+.+......++.+..+++||||.|+++|..
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f------------~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt 73 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTF------------TESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT 73 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCc------------chhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh
Confidence 35678999999999999999999976533 222333 4444444444444567899999999999999
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
.+..++|.|+|+|+|+|.++.-.... ..|+..++++ ++|.++|.||+|+.....-..+ +..++..++
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~----~a~~fa~~~----- 144 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTE----EAQEFADEL----- 144 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHH----HHHHHHHhc-----
Confidence 99999999999999999887544333 3455666654 6789999999998654332212 222333333
Q ss_pred ccccc-EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 211 QLDFP-VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 211 ~~~~P-vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+.| ++++||+.+. ++++.|..|...+
T Consensus 145 --~~~~f~ETSAK~~~--------------NVe~~F~~la~~l 171 (205)
T KOG0084|consen 145 --GIPIFLETSAKDST--------------NVEDAFLTLAKEL 171 (205)
T ss_pred --CCcceeecccCCcc--------------CHHHHHHHHHHHH
Confidence 356 9999999998 8888888776544
No 208
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.65 E-value=2.3e-15 Score=159.41 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=108.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCC------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------ 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~d------ 131 (639)
-+..|+|+|.+++|||||+++|.... .........|.......+.+.+ .+++|+||||+.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~------------~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~ 223 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK------------PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA 223 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC------------ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccc
Confidence 46789999999999999999998651 1122233556666666677776 8999999999753
Q ss_pred -chHHHHHHHhhccEEEEEEeCCCC----CchhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 132 -FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 132 -F~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
+...+.+.+..+|++|+|+|+.+. +..+...+.+.+.. .+.|+++|+||+|+... ....+..+++
T Consensus 224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l--- 298 (329)
T TIGR02729 224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKEL--- 298 (329)
T ss_pred cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHH---
Confidence 344566777789999999998753 22222333333333 36899999999998643 2222222222
Q ss_pred HHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
...+ .++++++||+++. |+++|+++|.+.+
T Consensus 299 ~~~~-------~~~vi~iSAktg~--------------GI~eL~~~I~~~l 328 (329)
T TIGR02729 299 KKAL-------GKPVFPISALTGE--------------GLDELLYALAELL 328 (329)
T ss_pred HHHc-------CCcEEEEEccCCc--------------CHHHHHHHHHHHh
Confidence 1222 2469999999999 9999999998765
No 209
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=8.4e-16 Score=142.64 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC----CchHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA----DFGGEVE 137 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~----dF~~ev~ 137 (639)
+|+++|++|+|||||+++|+.... . ...| ..+.|.. .+|||||+. .+.....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~------------~----~~~t-----~~~~~~~---~~iDt~G~~~~~~~~~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI------------L----YKKT-----QAVEYND---GAIDTPGEYVENRRLYSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc------------c----cccc-----eeEEEcC---eeecCchhhhhhHHHHHHHH
Confidence 799999999999999999975511 0 0011 1233433 789999973 2223333
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
..++.+|++|+|+|++++...+...++.. .+.|+|+|+||+|+..... . .+++.+++...+. .|++
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~------~~~~ 123 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV-D----IERAKELLETAGA------EPIF 123 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc-C----HHHHHHHHHHcCC------CcEE
Confidence 45789999999999998877666544433 2459999999999854211 1 1222233333332 2689
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
++||++|. |+++++++|.
T Consensus 124 ~~Sa~~~~--------------gi~~l~~~l~ 141 (142)
T TIGR02528 124 EISSVDEQ--------------GLEALVDYLN 141 (142)
T ss_pred EEecCCCC--------------CHHHHHHHHh
Confidence 99999998 9999999874
No 210
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.3e-15 Score=142.09 Aligned_cols=169 Identities=20% Similarity=0.274 Sum_probs=121.8
Q ss_pred CCCCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC-
Q 006610 52 NSTLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA- 130 (639)
Q Consensus 52 ~~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~- 130 (639)
.+.++.+....||++|.+|+|||||+|+|+++.. -....+.+|.|....+..+.. .+.|+|.||+.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~----------LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGy 82 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN----------LARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGY 82 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc----------eeecCCCCCccceeEEEEecC---cEEEEeCCCccc
Confidence 3444555678999999999999999999998632 133456678888877666543 38999999963
Q ss_pred ---------CchHHHHHHHh---hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHH
Q 006610 131 ---------DFGGEVERVVG---MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLV 198 (639)
Q Consensus 131 ---------dF~~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i 198 (639)
.....+..++. ...++++++|+.+++...++++++.+.+.++|++|++||+|+...+ .....+..+
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~--~~~k~l~~v 160 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKS--ERNKQLNKV 160 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChh--HHHHHHHHH
Confidence 23344455553 3578999999999999999999999999999999999999996532 222233333
Q ss_pred HHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 199 FDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 199 ~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+ .++.......+ ++..|+.++. |+++|.+.|.+++-
T Consensus 161 ~~---~l~~~~~~~~~-~~~~ss~~k~--------------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 161 AE---ELKKPPPDDQW-VVLFSSLKKK--------------GIDELKAKILEWLK 197 (200)
T ss_pred HH---HhcCCCCccce-EEEEeccccc--------------CHHHHHHHHHHHhh
Confidence 32 22222211111 7888888888 99999999987653
No 211
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.65 E-value=1.3e-16 Score=133.57 Aligned_cols=72 Identities=21% Similarity=0.154 Sum_probs=67.6
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-CE-EEEEEEeccccccchhhhccccceeceEeeeecccee
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WL-WKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~~-~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (639)
||+++++|.+ +|+|+++|++|||++ ++++ + ++ .+|++++|+++++||.++||++|+|+|.|++.|+||+
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i---~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~ 77 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHV---IYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQ 77 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEE---eeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeee
Confidence 8999999999 999999999999999 8877 3 33 8999999999999999999999999999999999999
Q ss_pred ecc
Q 006610 531 KHR 533 (639)
Q Consensus 531 ~~~ 533 (639)
+++
T Consensus 78 ~v~ 80 (80)
T cd04098 78 IVP 80 (80)
T ss_pred ECc
Confidence 974
No 212
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=2.1e-15 Score=145.68 Aligned_cols=157 Identities=12% Similarity=0.013 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~ 138 (639)
.+|+++|..|+|||||+.+++..........++ +.... ..+.+++ +.++||||||+.+|......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~----------~~~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV----------FDNYA---VTVMIGGEPYTLGLFDTAGQEDYDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce----------eeeeE---EEEEECCEEEEEEEEECCCccchhhhhhh
Confidence 479999999999999999998753322111111 11110 1223333 68899999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCchhHH-H-HHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK-F-VLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANL 205 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~-~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~ 205 (639)
+++.+|++|+|+|.++....+.. . ++..... .++|+|+|.||+|+..... ....+ .++..++....
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~-~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS-TIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh-hHHHhhhccCCCcCHHHHHHHHHHh
Confidence 99999999999998876544433 2 4444433 2689999999999854311 00000 01111222222
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
+ .++++++||++|. |++++|+.++..
T Consensus 148 ~------~~~~~e~SA~tg~--------------~v~~~f~~~~~~ 173 (175)
T cd01874 148 K------AVKYVECSALTQK--------------GLKNVFDEAILA 173 (175)
T ss_pred C------CcEEEEecCCCCC--------------CHHHHHHHHHHH
Confidence 2 1569999999999 999999998764
No 213
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.64 E-value=1.9e-16 Score=132.41 Aligned_cols=71 Identities=41% Similarity=0.536 Sum_probs=68.5
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceee
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (639)
|||++++|.| +|+||++|++|||++ .+++ + ++++|+|.+|+++++||.++|+++|+|+|+|++.|+||+|
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i---~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~ 77 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEM---VDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEP 77 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEE---EccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEe
Confidence 8999999999 999999999999999 8888 4 6899999999999999999999999999999999999998
Q ss_pred c
Q 006610 532 H 532 (639)
Q Consensus 532 ~ 532 (639)
+
T Consensus 78 ~ 78 (79)
T cd03710 78 Y 78 (79)
T ss_pred c
Confidence 6
No 214
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.64 E-value=3.4e-15 Score=149.44 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=108.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..++|||||+++|+...... ...|+........+..+.++||||||+..|......+++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~---------------~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD---------------TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCR 66 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---------------CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhc
Confidence 69999999999999999998753211 011222233334456788999999999999998899999
Q ss_pred hccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCH--------H-------HHHHHHHHHHHHH
Q 006610 142 MVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSE--------E-------RCDEVESLVFDLF 202 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~--------~-------~~~~v~~~i~~l~ 202 (639)
.+|++|+|+|+++....... .+|..+.+ .++|+|+|.||+|+..... . ...-..++...+.
T Consensus 67 ~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a 146 (220)
T cd04126 67 GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence 99999999999875433333 34444443 3578999999999854100 0 0000112233333
Q ss_pred HhcCCC---Cc----cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 203 ANLGAT---DE----QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 203 ~~~g~~---~~----~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+.+.. .+ ..++|++++||++|. |++++|+.+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~--------------~V~elf~~i~~~~ 189 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGY--------------NVDELFEYLFNLV 189 (220)
T ss_pred HHhCccccccccccccccceEEEeeCCCCC--------------CHHHHHHHHHHHH
Confidence 333210 00 112679999999999 9999999998765
No 215
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=3.1e-15 Score=161.59 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=113.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~d------- 131 (639)
+-.|+|+|.+|+|||||+++|+... .......++|.......+.+.+ ..+.|+||||..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k------------~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~ 226 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK------------PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAG 226 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc------------ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhh
Confidence 5589999999999999999998651 2233445777777777777775 4699999999753
Q ss_pred chHHHHHHHhhccEEEEEEeCC----CCCchhHHHHHHHHHHc-----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Q 006610 132 FGGEVERVVGMVEGAILVVDAG----EGPLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~----~g~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~ 202 (639)
+.....+.+..+|++|+|||+. ..+..+...+++.+..+ +.|.|+|+||+|+.. ... +.+.+..+.
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~--~~e---l~~~l~~l~ 301 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD--EEE---AEERAKAIV 301 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC--hHH---HHHHHHHHH
Confidence 3445667889999999999986 22333444555555543 689999999999853 222 222222222
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..++. ..+++++||+++. |+++|++.|.+++|.
T Consensus 302 ~~~~~-----~~~Vi~ISA~tg~--------------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 302 EALGW-----EGPVYLISAASGL--------------GVKELCWDLMTFIEE 334 (390)
T ss_pred HHhCC-----CCCEEEEECCCCc--------------CHHHHHHHHHHHhhh
Confidence 22222 1358999999998 999999999998864
No 216
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.64 E-value=1.7e-15 Score=149.49 Aligned_cols=151 Identities=19% Similarity=0.151 Sum_probs=104.0
Q ss_pred EcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccE
Q 006610 66 IAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEG 145 (639)
Q Consensus 66 iGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~ 145 (639)
+|..++|||||+.+++.......... .-|++.......+..+..+++||||||+.+|...+..+++.+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~----------Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVA----------TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCC----------ceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCE
Confidence 59999999999999985422111100 11223332222333345789999999999999999999999999
Q ss_pred EEEEEeCCCCCchhHH-HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccc
Q 006610 146 AILVVDAGEGPLAQTK-FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAK 222 (639)
Q Consensus 146 allVVDa~~g~~~qt~-~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~ 222 (639)
+|+|+|+++....+.. .|+..+.+ .++|+|+|.||+|+..... ..+..++... ..++++++||+
T Consensus 71 ~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v------~~~~~~~~~~-------~~~~~~e~SAk 137 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV------KAKSITFHRK-------KNLQYYDISAK 137 (200)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC------CHHHHHHHHH-------cCCEEEEEeCC
Confidence 9999999987655444 34444554 4789999999999843111 1111122222 13679999999
Q ss_pred cCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 223 EGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 223 ~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|. |+.++|++|.+.+.
T Consensus 138 ~~~--------------~v~~~F~~l~~~i~ 154 (200)
T smart00176 138 SNY--------------NFEKPFLWLARKLI 154 (200)
T ss_pred CCC--------------CHHHHHHHHHHHHH
Confidence 999 99999999987653
No 217
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.64 E-value=8.3e-16 Score=130.21 Aligned_cols=81 Identities=26% Similarity=0.260 Sum_probs=74.8
Q ss_pred eEEEeeee---ecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCC
Q 006610 265 MLVTMMEK---DFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGM 341 (639)
Q Consensus 265 ~~V~~~~~---d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl 341 (639)
++|||+.+ +++.|+++++|||||+|++||.|++...+ ..++|.+|+.++|.++.++++|.||||++++|+
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~-------~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl 73 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLG-------KEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNP 73 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCC-------CEEEeeEeEEEecCCeeEcCEECCCCEEEEECC
Confidence 47999999 99999999999999999999999987531 357899999999999999999999999999999
Q ss_pred CCCCcCCeeee
Q 006610 342 TKPSIGHTVAN 352 (639)
Q Consensus 342 ~~~~~Gdtl~~ 352 (639)
+++.+|||||+
T Consensus 74 ~~~~~Gdtl~~ 84 (85)
T cd03689 74 GNFQIGDTLTE 84 (85)
T ss_pred CCccccCEeeC
Confidence 99999999985
No 218
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=2.8e-15 Score=143.81 Aligned_cols=158 Identities=16% Similarity=0.089 Sum_probs=103.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhh
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGM 142 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~ 142 (639)
|+|+|..|+|||||+++++..........+. .........+....+.+.||||||+.+|.......++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTV-----------FENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcE-----------EeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCC
Confidence 5899999999999999998764322111111 01111112222234578999999999998888888999
Q ss_pred ccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhcCCCC
Q 006610 143 VEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGATD 209 (639)
Q Consensus 143 aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~g~~~ 209 (639)
+|++|+|+|.++.-..+.. .++....+. ++|+|+|+||+|+.... ....+. .++...+...++.
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 146 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALAKRIGA-- 146 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHHHHcCC--
Confidence 9999999998865333222 344444433 78999999999985421 111111 1122233333332
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+++++||++|. |++++++.+++.+
T Consensus 147 ----~~~~e~Sa~~~~--------------~v~~lf~~l~~~~ 171 (174)
T smart00174 147 ----VKYLECSALTQE--------------GVREVFEEAIRAA 171 (174)
T ss_pred ----cEEEEecCCCCC--------------CHHHHHHHHHHHh
Confidence 368999999999 9999999998765
No 219
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.64 E-value=2.7e-15 Score=143.76 Aligned_cols=150 Identities=22% Similarity=0.247 Sum_probs=101.1
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCC-------chHHH
Q 006610 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHAD-------FGGEV 136 (639)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~d-------F~~ev 136 (639)
|+|+.|+|||||+++|+.... ......+.|+......+.++ +..++||||||+.+ +....
T Consensus 1 iiG~~~~GKStll~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 68 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQF 68 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHH
Confidence 589999999999999987521 22233456666666667777 89999999999743 22344
Q ss_pred HHHHhhccEEEEEEeCCCCC-------chhHHHHHHHHH----------HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHH
Q 006610 137 ERVVGMVEGAILVVDAGEGP-------LAQTKFVLAKAL----------KYGLRPILLLNKVDRPAVSEERCDEVESLVF 199 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~-------~~qt~~~l~~~~----------~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~ 199 (639)
...++.+|++++|+|+.+.. ..+...++..+. ..+.|+++|+||+|+..... ..+.. ..
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~--~~ 144 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEEL--VR 144 (176)
T ss_pred HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHH--HH
Confidence 56678899999999998762 122222333332 14789999999999854322 11111 11
Q ss_pred HHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
. ... ....+++++||+++. |++++++.+...
T Consensus 145 ~-~~~------~~~~~~~~~Sa~~~~--------------gl~~l~~~l~~~ 175 (176)
T cd01881 145 E-LAL------EEGAEVVPISAKTEE--------------GLDELIRAIYEL 175 (176)
T ss_pred H-Hhc------CCCCCEEEEehhhhc--------------CHHHHHHHHHhh
Confidence 1 111 112569999999999 999999998764
No 220
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5.3e-15 Score=142.12 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=121.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
..+...+|.++|.+++|||+|+.++...+.......++ ||....+...+.....++.||||.|+..|...
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi----------GIDFk~kti~l~g~~i~lQiWDtaGQerf~ti 77 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI----------GIDFKIKTIELDGKKIKLQIWDTAGQERFRTI 77 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE----------EEEEEEEEEEeCCeEEEEEEEEcccchhHHHH
Confidence 44568899999999999999999999886654443332 55555555555556678999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...+++.|++++||+|.+.... ...+.|++...+. ++|.++|.||+|+...+.-. .++-..+..++|
T Consensus 78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~----~e~ge~lA~e~G----- 148 (207)
T KOG0078|consen 78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVS----KERGEALAREYG----- 148 (207)
T ss_pred HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccccc----HHHHHHHHHHhC-----
Confidence 9999999999999999766543 3444455555543 78899999999986522211 122334444554
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||+.|. |+++.|-.+.+.+-
T Consensus 149 --~~F~EtSAk~~~--------------NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 149 --IKFFETSAKTNF--------------NIEEAFLSLARDIL 174 (207)
T ss_pred --CeEEEccccCCC--------------CHHHHHHHHHHHHH
Confidence 569999999999 88888887776654
No 221
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.64 E-value=3.9e-15 Score=151.72 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=107.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..|+|||||+++++..........++-| ...+...+....+.++||||+|+.+|......++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d-----------~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED-----------FHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH-----------hEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhc
Confidence 6999999999999999999865332211111111 11222223333478999999999999887777889
Q ss_pred hccEEEEEEeCCCCCchhH-HHHHHHHHH------------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 142 MVEGAILVVDAGEGPLAQT-KFVLAKALK------------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt-~~~l~~~~~------------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.+|++|+|+|.++....+. ..++..+.+ .++|+|+|+||+|+...+... .+++.+++...
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~----~~ei~~~~~~~--- 143 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ----RDEVEQLVGGD--- 143 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC----HHHHHHHHHhc---
Confidence 9999999999887543222 334444432 368999999999985422111 12233333211
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
..++++++||++|. |++++|++|.+..-.|.
T Consensus 144 ---~~~~~~evSAktg~--------------gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 144 ---ENCAYFEVSAKKNS--------------NLDEMFRALFSLAKLPN 174 (247)
T ss_pred ---CCCEEEEEeCCCCC--------------CHHHHHHHHHHHhcccc
Confidence 12569999999998 99999999998765544
No 222
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=3.1e-15 Score=164.24 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH--
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV-- 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev-- 136 (639)
...+|+|+|++|+|||||+++|++... .......|+|.+.....+.++++.++||||||+.++...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-----------aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-----------AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVER 270 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-----------cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHH
Confidence 346899999999999999999997521 1122345778777778888899999999999997765432
Q ss_pred ------HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 137 ------ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 137 ------~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
..+++.+|++|+|+|++++...+.. ++..+...+.|+|+|+||+|+...+. . + +...+
T Consensus 271 ~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~---~----~---~~~~~----- 334 (442)
T TIGR00450 271 LGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL---E----F---FVSSK----- 334 (442)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch---h----h---hhhhc-----
Confidence 3567889999999999887665554 66666667899999999999854311 1 1 11111
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..|++.+||+++ |++++++.+.+.+
T Consensus 335 --~~~~~~vSak~~---------------gI~~~~~~L~~~i 359 (442)
T TIGR00450 335 --VLNSSNLSAKQL---------------KIKALVDLLTQKI 359 (442)
T ss_pred --CCceEEEEEecC---------------CHHHHHHHHHHHH
Confidence 246889999973 6777777766544
No 223
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.64 E-value=5.1e-15 Score=144.02 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|..++|||||+.+++..........++.+ .. .....+..+...+.||||+|+..|......
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~----------~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE----------NY-TASFEIDTQRIELSLWDTSGSPYYDNVRPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee----------ee-EEEEEECCEEEEEEEEECCCchhhHhhhhh
Confidence 3568999999999999999999976433222222211 11 111222333467999999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHH---------HHHHHHHHHHhc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDE---------VESLVFDLFANL 205 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~---------v~~~i~~l~~~~ 205 (639)
+++.+|++|+|+|.++....+. ..|+..+.+. +.|+|+|.||+|+.... ....+ ..++..++..++
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 9999999999999887654444 2444454443 67899999999984311 00000 112333444444
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccc-hHHHHHHHHhh
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRH 251 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-l~~Lld~I~~~ 251 (639)
++ ++++++||++|. | ++++|+.+++.
T Consensus 152 ~~------~~~~E~SAk~~~--------------n~v~~~F~~~~~~ 178 (182)
T cd04172 152 GA------ATYIECSALQSE--------------NSVRDIFHVATLA 178 (182)
T ss_pred CC------CEEEECCcCCCC--------------CCHHHHHHHHHHH
Confidence 42 369999999998 7 99999988763
No 224
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.64 E-value=1.1e-15 Score=129.17 Aligned_cols=83 Identities=29% Similarity=0.461 Sum_probs=76.7
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
|.++|||++++++.|+++++|||+|+|++||.|++.... ...+|.+|+.+.|.++.++++|.||||+++.|++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~ 73 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKG-------KKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLK 73 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCC-------cEEEeeEEEEEcCCCceECCEeCCCCEEEEECCC
Confidence 578999999999999999999999999999999988532 4578999999999999999999999999999999
Q ss_pred CCCcCCeeee
Q 006610 343 KPSIGHTVAN 352 (639)
Q Consensus 343 ~~~~Gdtl~~ 352 (639)
++.+||||++
T Consensus 74 ~~~~Gdtl~~ 83 (83)
T cd04088 74 DTATGDTLCD 83 (83)
T ss_pred CCccCCEeeC
Confidence 9999999974
No 225
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.63 E-value=2.3e-16 Score=132.26 Aligned_cols=72 Identities=24% Similarity=0.184 Sum_probs=68.1
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C--CEEEEEEEeccccccchhhhccccceeceEeeeecccee
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G--WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~--~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (639)
|||++++|.+ +|+|+++|++|||++ .+++ + ++++|+|.+|+++++||.++|+++|+|+|+|++.|+||+
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i---~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~ 77 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHV---LSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWE 77 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEE---eEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeE
Confidence 8999999999 999999999999999 8877 2 459999999999999999999999999999999999999
Q ss_pred ecc
Q 006610 531 KHR 533 (639)
Q Consensus 531 ~~~ 533 (639)
|++
T Consensus 78 ~~~ 80 (80)
T cd04096 78 IVP 80 (80)
T ss_pred ECc
Confidence 974
No 226
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.63 E-value=4.9e-15 Score=140.62 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=104.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe-ecCceEEEEeCCCCCCchHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~-~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
+|+++|..++|||||+++|......-. .......|..+......+. .....+++|||||+..|...+...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFP--------KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC--------ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHh
Confidence 799999999999999999985311100 0000111222222222232 2347899999999999998899999
Q ss_pred hhccEEEEEEeCCCCCchh-HHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~q-t~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
+.+|++++|+|.++..... -..++..+... +.|+++|+||+|+....... .+ +...+.... .++++
T Consensus 74 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~---~~~~~~~~~-------~~~~~ 142 (164)
T cd04101 74 ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVT-DA---QAQAFAQAN-------QLKFF 142 (164)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCC-HH---HHHHHHHHc-------CCeEE
Confidence 9999999999987653322 23444444443 68999999999985432101 00 111111111 24689
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++||++|. |++++++.+.+.+
T Consensus 143 ~~Sa~~~~--------------gi~~l~~~l~~~~ 163 (164)
T cd04101 143 KTSALRGV--------------GYEEPFESLARAF 163 (164)
T ss_pred EEeCCCCC--------------ChHHHHHHHHHHh
Confidence 99999999 9999999998754
No 227
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4.5e-15 Score=144.79 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..++|||||+++|+........ ....|.+.......+......+.||||||+.+|...+...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST----------KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHc
Confidence 37999999999999999999865321111 11112223233333333346789999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 141 GMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
+.+|++|+|+|+.+.-.... ..++..... .+.|+++++||+|+......... ....+.... .+|+
T Consensus 71 ~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~----~~~~~~~~~-------~~~~ 139 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSN----IAKSFCDSL-------NIPF 139 (188)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHH----HHHHHHHHc-------CCeE
Confidence 99999999999887543322 233444433 25788999999998642211101 111222222 2479
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |++++|+.+++.+.
T Consensus 140 ~evSa~~~~--------------~i~~~f~~l~~~~~ 162 (188)
T cd04125 140 FETSAKQSI--------------NVEEAFILLVKLII 162 (188)
T ss_pred EEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 999999998 99999998887664
No 228
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.63 E-value=5e-15 Score=142.21 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
++|+|+|+.++|||||+.+|+..........++ +... .....+..+...+.||||||+.+|.......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------ccce-EEEEEECCEEEEEEEEeCCCchhhhhcccccc
Confidence 589999999999999999998763322111111 1111 11122222345789999999999877766788
Q ss_pred hhccEEEEEEeCCCCCchhHH--HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhcCC
Q 006610 141 GMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGA 207 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~g~ 207 (639)
+.+|++++|+|..+....... .++..+.. .++|+++|+||+|+..... ...++ ..+...+...++
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~i~~~~~~~v~~~~~~~~~~~~~- 148 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH-TRRELAKMKQEPVKPEEGRDMANKIG- 148 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh-hhhhhhhccCCCccHHHHHHHHHHcC-
Confidence 899999999998754222221 23333333 3789999999999854221 00111 011112222222
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |+++++++|.+..
T Consensus 149 -----~~~~~~~Sa~~~~--------------~v~~lf~~l~~~~ 174 (175)
T cd01870 149 -----AFGYMECSAKTKE--------------GVREVFEMATRAA 174 (175)
T ss_pred -----CcEEEEeccccCc--------------CHHHHHHHHHHHh
Confidence 2469999999998 9999999998653
No 229
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.63 E-value=3.1e-15 Score=159.72 Aligned_cols=150 Identities=25% Similarity=0.277 Sum_probs=102.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCC-CCchH--
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGH-ADFGG-- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh-~dF~~-- 134 (639)
...+|+|+|++|+|||||+++|++.. .......+.|.+.....+.+ ++..+.||||||+ .++..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~------------~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~l 255 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD------------VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHEL 255 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc------------eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHH
Confidence 45789999999999999999998752 11122235566666666666 5689999999997 32111
Q ss_pred -----HHHHHHhhccEEEEEEeCCCCCchhHH----HHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 135 -----EVERVVGMVEGAILVVDAGEGPLAQTK----FVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 135 -----ev~~~l~~aD~allVVDa~~g~~~qt~----~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
.+...+..||++|+|+|+++....... .+++.+...+.|+|+|+||+|+.. ... +. .+..
T Consensus 256 ie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~--~~~---v~----~~~~-- 324 (351)
T TIGR03156 256 VAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD--EPR---IE----RLEE-- 324 (351)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC--hHh---HH----HHHh--
Confidence 122347789999999999876544332 233333233789999999999853 211 11 1111
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
+ ..+++++||++|. |+++|+++|.+.
T Consensus 325 ~------~~~~i~iSAktg~--------------GI~eL~~~I~~~ 350 (351)
T TIGR03156 325 G------YPEAVFVSAKTGE--------------GLDLLLEAIAER 350 (351)
T ss_pred C------CCCEEEEEccCCC--------------CHHHHHHHHHhh
Confidence 1 1358999999999 999999999765
No 230
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=4.4e-15 Score=163.21 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=110.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
-+..|+|+|.+++|||||+++|+.. ........+.|+......+.+++.+++|+||||..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~a------------kpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~g 225 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAA------------KPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKG 225 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcC------------CccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhH
Confidence 3678999999999999999999864 122334457888888888888999999999999643
Q ss_pred chHHHHHHHhhccEEEEEEeCCCC-----CchhHHH----HHHHH----------HHcCCCcEEEEcCCCCCCCCHHHHH
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEG-----PLAQTKF----VLAKA----------LKYGLRPILLLNKVDRPAVSEERCD 192 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g-----~~~qt~~----~l~~~----------~~~~lp~IvviNKiD~~~~~~~~~~ 192 (639)
...+..+.+..||++|+|||++.. +..+... +..+. ...+.|+|||+||+|++.+.
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~----- 300 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR----- 300 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-----
Confidence 233456677889999999998641 1111111 22222 12468999999999985432
Q ss_pred HHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 193 ~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++.+.+.+.+... .+|++++||+++. |+++|+++|.+.+.
T Consensus 301 el~e~l~~~l~~~-------g~~Vf~ISA~tge--------------GLdEL~~~L~ell~ 340 (500)
T PRK12296 301 ELAEFVRPELEAR-------GWPVFEVSAASRE--------------GLRELSFALAELVE 340 (500)
T ss_pred HHHHHHHHHHHHc-------CCeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 1222232333322 2579999999998 99999999887663
No 231
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.63 E-value=9.7e-15 Score=138.87 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=103.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+|+++|..++|||||+.+++....... ....+........+... ...++||||||+.+|......+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~ 69 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSS------------HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQY 69 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC------------CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHH
Confidence 699999999999999999986532111 11112222222233333 3578999999999999888899
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++++|+|..+.-..+ ...++..+.. .++|+++|.||+|+...+... .++...+...++ +|
T Consensus 70 ~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~----~~~~~~~~~~~~-------~~ 138 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVG----DEQGNKLAKEYG-------MD 138 (161)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC----HHHHHHHHHHcC-------CE
Confidence 99999999999987643322 2234443333 257899999999985432211 112222222222 46
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++++||++|. |++++|++|.+.
T Consensus 139 ~~e~Sa~~~~--------------~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNS--------------NIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHhh
Confidence 8999999998 999999999764
No 232
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.62 E-value=3e-16 Score=130.93 Aligned_cols=72 Identities=28% Similarity=0.271 Sum_probs=69.2
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeec
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
|||++++|.+ .|.|+++|++|||++ .+++ +++.+|+|.+|+++++||.++|+++|+|+|.+++.|+||+++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i---~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~ 77 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQI---LGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEV 77 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCce---EceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeEC
Confidence 8999999999 999999999999999 9888 478999999999999999999999999999999999999997
Q ss_pred c
Q 006610 533 R 533 (639)
Q Consensus 533 ~ 533 (639)
+
T Consensus 78 ~ 78 (78)
T cd03713 78 P 78 (78)
T ss_pred c
Confidence 4
No 233
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=4.5e-15 Score=140.11 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=118.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..++|||||+-++....+... .|..-|-....+...+.-...++-||||.|++.|.+...-+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMY 74 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHEN----------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMY 74 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccc----------cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccce
Confidence 46899999999999999999987633211 23333545555555544445789999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHHcCCC-c--EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALKYGLR-P--ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~~lp-~--IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+|.|++||+|+|.++.-..+ .+.|++.+.+..-| + .+|.||+|+...+...+ ++..++....| .+
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~----~ea~~yAe~~g-------ll 143 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEF----EEAQAYAESQG-------LL 143 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccH----HHHHHHHHhcC-------CE
Confidence 99999999999988765444 44566666555444 2 36899999965333222 23334443333 56
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~ 257 (639)
++++||++|. |++++|..|.+.+|....
T Consensus 144 ~~ETSAKTg~--------------Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 144 FFETSAKTGE--------------NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEEEeccccc--------------CHHHHHHHHHHhccCccc
Confidence 9999999999 999999999999997654
No 234
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=8.6e-15 Score=141.92 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..++|||||+.+++..........++. ... .....+..+..+++||||||+..|......++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~----------~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~ 70 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF----------ENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCY 70 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE----------EEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhc
Confidence 3799999999999999999987643222111111 011 11122222346789999999999988888889
Q ss_pred hhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHH--------H-HHHHHHHHHhcCC
Q 006610 141 GMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDE--------V-ESLVFDLFANLGA 207 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~--------v-~~~i~~l~~~~g~ 207 (639)
+.+|++|+|+|.++....+. ..|+..+.+. +.|+|+|.||+|+... .....+ + .++..++...+++
T Consensus 71 ~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~-~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 71 PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTD-LSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcC-hhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 99999999999877654443 3455555443 6789999999998531 110000 1 1223333333332
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccc-hHHHHHHHHhh
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRH 251 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-l~~Lld~I~~~ 251 (639)
.+++++||++|. + ++++|+.+++.
T Consensus 150 ------~~~~E~SA~~~~--------------~~v~~~F~~~~~~ 174 (178)
T cd04131 150 ------EIYLECSAFTSE--------------KSVRDIFHVATMA 174 (178)
T ss_pred ------CEEEECccCcCC--------------cCHHHHHHHHHHH
Confidence 268999999997 6 99999998763
No 235
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.61 E-value=3.2e-15 Score=127.15 Aligned_cols=86 Identities=42% Similarity=0.671 Sum_probs=77.6
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
|+|+|||++++++.|+++++||++|+|++||.|++...++ .....+|.+|+.++|.++.+++++.||||+++.|++
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~----~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDG----KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCC----CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCC
Confidence 6899999999999999999999999999999999875421 124578999999999999999999999999999999
Q ss_pred CCCcCCeeee
Q 006610 343 KPSIGHTVAN 352 (639)
Q Consensus 343 ~~~~Gdtl~~ 352 (639)
++.+||||++
T Consensus 77 ~~~~Gdtl~~ 86 (86)
T cd03691 77 DITIGDTICD 86 (86)
T ss_pred CCcccceecC
Confidence 9999999963
No 236
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=7.1e-15 Score=141.14 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=104.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC-CCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA-DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+..+|+++|..|+|||||+++++..... .....++ +.........+......+++|||+|+..|.....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~----------~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI----------KPRYAVNTVEVYGQEKYLILREVGEDEVAILLND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc----------CcceEEEEEEECCeEEEEEEEecCCcccccccch
Confidence 5789999999999999999999875332 1111111 1111112222222235788999999999988788
Q ss_pred HHHhhccEEEEEEeCCCCCchh-HHHHHHHHH-HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKAL-KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~-~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
.+++.+|++|+|+|+++....+ ...+++... ..++|+++|+||+|+...... ...+..++...++.. +
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~------~ 142 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR----YEVQPDEFCRKLGLP------P 142 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc----cccCHHHHHHHcCCC------C
Confidence 8889999999999997753222 223444332 237899999999998543211 011112222333332 2
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |++++++.+.+.+-
T Consensus 143 ~~~~Sa~~~~--------------~v~~lf~~l~~~~~ 166 (169)
T cd01892 143 PLHFSSKLGD--------------SSNELFTKLATAAQ 166 (169)
T ss_pred CEEEEeccCc--------------cHHHHHHHHHHHhh
Confidence 5889999998 99999999987653
No 237
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=7.8e-15 Score=159.35 Aligned_cols=153 Identities=21% Similarity=0.270 Sum_probs=109.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHAD------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~d------- 131 (639)
+..|+|+|.+++|||||+++|+... .......+.|+......+.+. +..++|+||||+..
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak------------~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g 225 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK------------PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG 225 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC------------CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccch
Confidence 5689999999999999999998651 122334567777777777777 78999999999743
Q ss_pred chHHHHHHHhhccEEEEEEeCCCC----CchhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~ 202 (639)
+.....+.+..+|++|+|||++.. +..+...+...+.. .+.|.|||+||+|+... .. . +.++.
T Consensus 226 Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e----~---l~~l~ 297 (424)
T PRK12297 226 LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EE----N---LEEFK 297 (424)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HH----H---HHHHH
Confidence 334556667779999999998642 22233344444443 37899999999998432 11 1 11222
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
..++ .+++++||+++. |+++|+++|.+.+.
T Consensus 298 ~~l~-------~~i~~iSA~tge--------------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 298 EKLG-------PKVFPISALTGQ--------------GLDELLYAVAELLE 327 (424)
T ss_pred HHhC-------CcEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 2222 369999999999 99999999987764
No 238
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.61 E-value=4.2e-15 Score=142.93 Aligned_cols=156 Identities=18% Similarity=0.092 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..|+|||||+.+++..........+.. ........+.....+++||||||+.+|......+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-----------~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-----------DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-----------eeeeEEEEECCEEEEEEEEECCCChhhccccccccC
Confidence 689999999999999999987533222111111 111112223323467899999999998887777889
Q ss_pred hccEEEEEEeCCCCCchhH--HHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHH--------HH-HHHHHHHHHhcCCC
Q 006610 142 MVEGAILVVDAGEGPLAQT--KFVLAKALK--YGLRPILLLNKVDRPAVSEERCD--------EV-ESLVFDLFANLGAT 208 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~--------~v-~~~i~~l~~~~g~~ 208 (639)
.+|++|+|+|..+....+. ..++..+.. .+.|+++++||+|+..... ... .+ .++...+....+.
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~a~~~~~- 148 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN-VLIQLARYGEKPVSQSRAKALAEKIGA- 148 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh-HHHHHhhcCCCCcCHHHHHHHHHHhCC-
Confidence 9999999999887644332 345555544 3689999999999853210 000 00 1122233333332
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
.+++++||++|. |++++++.++
T Consensus 149 -----~~~~e~Sa~~~~--------------~v~~lf~~~~ 170 (173)
T cd04130 149 -----CEYIECSALTQK--------------NLKEVFDTAI 170 (173)
T ss_pred -----CeEEEEeCCCCC--------------CHHHHHHHHH
Confidence 269999999999 9999999875
No 239
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=7.2e-15 Score=142.06 Aligned_cols=158 Identities=23% Similarity=0.281 Sum_probs=115.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
++..+|+++|..|+|||||+++|.... ... ..-|+......+.++++.++++|.+|+..|...+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~-----------~~~----~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~ 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGE-----------ISE----TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWK 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSS-----------EEE----EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcc-----------ccc----cCcccccccceeeeCcEEEEEEeccccccccccce
Confidence 456799999999999999999997431 111 12244455567788999999999999999988899
Q ss_pred HHHhhccEEEEEEeCCCCC-chhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.++..+|++|+|||+.+.- ....+..+..+.. .++|+++++||.|.+++... . ++.+.+...... ...
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~--~----~i~~~l~l~~l~-~~~ 149 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE--E----EIKEYLGLEKLK-NKR 149 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH--H----HHHHHTTGGGTT-SSS
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh--h----HHHhhhhhhhcc-cCC
Confidence 9999999999999988642 3445555544433 37899999999999765331 2 222222211111 233
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
.+.++.+||.+|. |+.+.+++|.+.
T Consensus 150 ~~~v~~~sa~~g~--------------Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 150 PWSVFSCSAKTGE--------------GVDEGLEWLIEQ 174 (175)
T ss_dssp CEEEEEEBTTTTB--------------THHHHHHHHHHH
T ss_pred ceEEEeeeccCCc--------------CHHHHHHHHHhc
Confidence 5779999999998 999999999865
No 240
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=7.9e-15 Score=146.14 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=104.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee---cCceEEEEeCCCCCCchHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---RENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~---~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+|+++|..|+|||||+++|+....... ..+.+..+.....+.+ ....++||||||+..|.....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~------------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV------------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC------------CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHH
Confidence 6899999999999999999987532111 1111222222222322 235799999999999998888
Q ss_pred HHHhhccEEEEEEeCCCCCchh-HHHHHHHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+++.+|++|+|+|.++..... ...++..+.+. ..|++++.||+|+....... .++...+...++
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~----~~~~~~~~~~~~------ 140 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT----REEAEKLAKDLG------ 140 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC----HHHHHHHHHHhC------
Confidence 9999999999999988753322 23344444332 45678899999985422111 112222223222
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.+.
T Consensus 141 -~~~~e~Sak~g~--------------~v~e~f~~l~~~~~ 166 (211)
T cd04111 141 -MKYIETSARTGD--------------NVEEAFELLTQEIY 166 (211)
T ss_pred -CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999998 99999999987664
No 241
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=3e-14 Score=134.58 Aligned_cols=156 Identities=19% Similarity=0.294 Sum_probs=105.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc----------
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF---------- 132 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF---------- 132 (639)
|+++|+.|+|||||++.|++.... ...+...+.|..... +.+. ..+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~----------~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~ 68 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL----------ARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKW 68 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce----------eeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHH
Confidence 799999999999999999853221 111222344433322 2222 38999999998653
Q ss_pred hHHHHHHHh---hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 133 GGEVERVVG---MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 133 ~~ev~~~l~---~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
......++. .++++++|+|+....+.....+++.+...+.|+++++||+|... ..........+...+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~--~~~~~~~~~~~~~~l~~~~--- 143 (170)
T cd01876 69 GKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK--KSELAKALKEIKKELKLFE--- 143 (170)
T ss_pred HHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC--hHHHHHHHHHHHHHHHhcc---
Confidence 222333333 45789999999887777777788888888999999999999843 2222333333333333211
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
...+++++||+++. ++.++++.|.+++
T Consensus 144 --~~~~~~~~Sa~~~~--------------~~~~l~~~l~~~~ 170 (170)
T cd01876 144 --IDPPIILFSSLKGQ--------------GIDELRALIEKWL 170 (170)
T ss_pred --CCCceEEEecCCCC--------------CHHHHHHHHHHhC
Confidence 12579999999998 9999999998754
No 242
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.60 E-value=3.5e-15 Score=125.41 Aligned_cols=81 Identities=26% Similarity=0.459 Sum_probs=74.3
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
|.++|||+.+|++ |+++++||++|+|++||.|++...+ +.++|.+|+.+.|.++.+++++.||||+++.|++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~-------~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~ 72 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTG-------KKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID 72 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCC-------CEEEEeEEEEEeCCCceEccEECCCCEEEEECCC
Confidence 5789999999988 9999999999999999999987532 4689999999999999999999999999999997
Q ss_pred CCCcCCeeee
Q 006610 343 KPSIGHTVAN 352 (639)
Q Consensus 343 ~~~~Gdtl~~ 352 (639)
+.+||||++
T Consensus 73 -~~~Gdtl~~ 81 (81)
T cd04091 73 -CASGDTFTD 81 (81)
T ss_pred -cccCCEecC
Confidence 999999974
No 243
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=7.6e-15 Score=147.29 Aligned_cols=178 Identities=22% Similarity=0.244 Sum_probs=119.7
Q ss_pred CCCCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC-
Q 006610 52 NSTLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA- 130 (639)
Q Consensus 52 ~~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~- 130 (639)
.......+..+||+||.+|+|||||.|.|+++. -.+..++..+|.......+.-+..++.|+||||..
T Consensus 64 rde~e~~k~L~vavIG~PNvGKStLtN~mig~k-----------v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs 132 (379)
T KOG1423|consen 64 RDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQK-----------VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVS 132 (379)
T ss_pred CCchhcceEEEEEEEcCCCcchhhhhhHhhCCc-----------cccccccccceeeeeeEEEecCceEEEEecCCcccc
Confidence 333445678999999999999999999999872 23344555666666777777788999999999932
Q ss_pred -----------CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc-CCCcEEEEcCCCCCCCCHHHHHHHHH--
Q 006610 131 -----------DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-GLRPILLLNKVDRPAVSEERCDEVES-- 196 (639)
Q Consensus 131 -----------dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-~lp~IvviNKiD~~~~~~~~~~~v~~-- 196 (639)
.|....+.++..||.+++|+|+.+.-....-.+++.+.++ ++|-|+|+||+|.......- ....+
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~L-l~l~~~L 211 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLL-LNLKDLL 211 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHH-hhhHHhc
Confidence 2455678899999999999999863333333455555554 78999999999985422110 11110
Q ss_pred ----------HHHHHHHhcC---CCCccccc----cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 197 ----------LVFDLFANLG---ATDEQLDF----PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 197 ----------~i~~l~~~~g---~~~~~~~~----Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
++.+-|.... .......+ -||++||++|. |+++|-++|+...|+-
T Consensus 212 t~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~--------------GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 212 TNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE--------------GIKDLKQYLMSQAPPG 273 (379)
T ss_pred cccccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc--------------CHHHHHHHHHhcCCCC
Confidence 1111111100 00000001 28999999999 9999999999888753
No 244
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=1.2e-14 Score=158.70 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=105.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc-eEEEEeCCCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHAD------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~-~i~iIDTPGh~d------- 131 (639)
.+.|+|+|.+|+|||||+|+|++.. .......+.|++.....+.+.+. .+.||||||+.+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~------------~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lv 264 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEAR------------VYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLV 264 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc------------eeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHH
Confidence 4689999999999999999998641 11223346666666666766654 899999999843
Q ss_pred --chHHHHHHHhhccEEEEEEeCCCCCchhHH----HHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 132 --FGGEVERVVGMVEGAILVVDAGEGPLAQTK----FVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 132 --F~~ev~~~l~~aD~allVVDa~~g~~~qt~----~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
|.. +...++.+|++|+|+|+++....... .++..+...++|+|+|+||+|+...... .+ +. ...
T Consensus 265 e~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~-----~~-~~~ 334 (426)
T PRK11058 265 AAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RI-----DR-DEE 334 (426)
T ss_pred HHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HH-----HH-Hhc
Confidence 222 23446789999999999886543332 3344444457899999999998532111 01 00 011
Q ss_pred CCCCcccccc-EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 206 GATDEQLDFP-VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 206 g~~~~~~~~P-vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+ .| ++++||++|. |+++|+++|.+.++.
T Consensus 335 ~-------~~~~v~ISAktG~--------------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 335 N-------KPIRVWLSAQTGA--------------GIPLLFQALTERLSG 363 (426)
T ss_pred C-------CCceEEEeCCCCC--------------CHHHHHHHHHHHhhh
Confidence 1 23 5889999999 999999999998854
No 245
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.59 E-value=7.5e-15 Score=166.75 Aligned_cols=146 Identities=25% Similarity=0.336 Sum_probs=108.0
Q ss_pred cCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH-----H-HHHH
Q 006610 67 AHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE-----V-ERVV 140 (639)
Q Consensus 67 Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e-----v-~~~l 140 (639)
|.+|+|||||+|+|++.. ......+|+|++.....+.++++++++|||||+.+|... + ..++
T Consensus 1 G~pNvGKSSL~N~Ltg~~------------~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l 68 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN------------QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL 68 (591)
T ss_pred CCCCCCHHHHHHHHhCCC------------CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH
Confidence 789999999999998651 123346799999988889999999999999999887542 2 2222
Q ss_pred --hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEe
Q 006610 141 --GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (639)
Q Consensus 141 --~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~ 218 (639)
..+|++++|+|+++. ........++.+.++|+++|+||+|+.+... +..+...+.+.+ .+|+++
T Consensus 69 ~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~-----i~~d~~~L~~~l-------g~pvv~ 134 (591)
T TIGR00437 69 LNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKG-----IRIDEEKLEERL-------GVPVVP 134 (591)
T ss_pred hhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCC-----ChhhHHHHHHHc-------CCCEEE
Confidence 368999999999863 2344555666778999999999999843221 111122222233 357999
Q ss_pred cccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+||++|. |++++++++.+..
T Consensus 135 tSA~tg~--------------Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 TSATEGR--------------GIERLKDAIRKAI 154 (591)
T ss_pred EECCCCC--------------CHHHHHHHHHHHh
Confidence 9999998 9999999998754
No 246
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=3.1e-14 Score=143.42 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=107.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..++|||||+.+++...+......++. ... .....+......++||||+|+.+|......+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~----------~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF----------ENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLC 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCcee----------eee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHH
Confidence 45899999999999999999987644322222221 111 1111222334689999999999998888889
Q ss_pred HhhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHH-------HHH-HHHHHHHHHHhcCC
Q 006610 140 VGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEER-------CDE-VESLVFDLFANLGA 207 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~-------~~~-v~~~i~~l~~~~g~ 207 (639)
++.+|++|||+|.++.-..+. ..|+..+.+. +.|+|+|.||+|+....... ... ..++..++...+++
T Consensus 82 ~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred cCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 999999999999987655443 3455555432 67899999999985311000 000 11233444444443
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+++++||++|.. |++++|+.++..+
T Consensus 162 ------~~~~EtSAktg~~-------------~V~e~F~~~~~~~ 187 (232)
T cd04174 162 ------EVYLECSAFTSEK-------------SIHSIFRSASLLC 187 (232)
T ss_pred ------CEEEEccCCcCCc-------------CHHHHHHHHHHHH
Confidence 1489999999951 5999998887543
No 247
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.58 E-value=1.6e-15 Score=126.86 Aligned_cols=72 Identities=28% Similarity=0.246 Sum_probs=69.2
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceee
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (639)
|||++++|.+ .|.|+++|++|||++ .+++ + ++.+|+|.+|+++++||+++|+++|+|+|.|++.|+||++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v---~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~ 77 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEI---LGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEP 77 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCee---EeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEe
Confidence 8999999999 999999999999999 8888 5 7999999999999999999999999999999999999998
Q ss_pred cc
Q 006610 532 HR 533 (639)
Q Consensus 532 ~~ 533 (639)
++
T Consensus 78 ~~ 79 (79)
T cd01514 78 VP 79 (79)
T ss_pred Cc
Confidence 74
No 248
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.58 E-value=7.7e-15 Score=124.78 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=72.0
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec-C-
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G- 340 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~-g- 340 (639)
|+++|||+++++|.|+++++|||+|+|++||.|++...+ +.+++.+|+.+ +.++.+++++.||||+++. |
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~-------~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~ 72 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTG-------KEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGI 72 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCC-------CeEEEEEEEEE-CCCccCCceECCCCEEEEEccc
Confidence 689999999999999999999999999999999987532 35789999955 7778999999999999985 4
Q ss_pred --CCCCCcCCeeee
Q 006610 341 --MTKPSIGHTVAN 352 (639)
Q Consensus 341 --l~~~~~Gdtl~~ 352 (639)
++++.+|||||+
T Consensus 73 ~~l~~~~~Gdtl~~ 86 (86)
T cd03699 73 KTVKDARVGDTITL 86 (86)
T ss_pred cccCccccccEeeC
Confidence 677899999984
No 249
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.58 E-value=4.5e-14 Score=141.50 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=104.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|..++|||||+.+++..........++.+. .. ....+......++||||+|+..|......++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~----------~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN----------YT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc----------eE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhc
Confidence 479999999999999999998764432222222111 11 1112222346789999999999998888899
Q ss_pred hhccEEEEEEeCCCCCchhHH-HHHH-HHHH--cCCCcEEEEcCCCCCCCCHHHHHH--------H-HHHHHHHHHhcCC
Q 006610 141 GMVEGAILVVDAGEGPLAQTK-FVLA-KALK--YGLRPILLLNKVDRPAVSEERCDE--------V-ESLVFDLFANLGA 207 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~-~~l~-~~~~--~~lp~IvviNKiD~~~~~~~~~~~--------v-~~~i~~l~~~~g~ 207 (639)
+.+|++|+|+|..+.-..+.. ..|. .... .+.|+|+|.||+|+.... ....+ + .++...+...+++
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 999999999998876433332 3343 2222 368999999999985421 11111 0 1122333333432
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++++++||+++.+ |++++|+.....
T Consensus 150 ------~~y~E~SAk~~~~-------------~V~~~F~~~~~~ 174 (222)
T cd04173 150 ------VSYVECSSRSSER-------------SVRDVFHVATVA 174 (222)
T ss_pred ------CEEEEcCCCcCCc-------------CHHHHHHHHHHH
Confidence 3699999998861 499999988764
No 250
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=2.8e-14 Score=143.20 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=100.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|..|+|||||+++++...... ...+...+.........+......++||||||+.++.. ...++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~---------~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDD---------HAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTE--DSCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCc---------cCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHH--hHHhh
Confidence 69999999999999999997542210 00001111122223333334567899999999984422 34556
Q ss_pred -hccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 142 -MVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 142 -~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
.+|++++|+|+++..... ...++..+.+ .++|+|+|.||+|+....... .++...+.... .++
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~a~~~-------~~~ 139 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVS----VQEGRACAVVF-------DCK 139 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceec----HHHHHHHHHHc-------CCe
Confidence 899999999998754332 2344444444 368999999999985432211 11112222222 246
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |+++++++|++.+-
T Consensus 140 ~~e~SA~~~~--------------gv~~l~~~l~~~~~ 163 (221)
T cd04148 140 FIETSAGLQH--------------NVDELLEGIVRQIR 163 (221)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 8999999998 99999999998774
No 251
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=154.71 Aligned_cols=154 Identities=22% Similarity=0.229 Sum_probs=120.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH---
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV--- 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev--- 136 (639)
-.+++|+|.+|+|||||+|+|+++ |..-+..-.|+|.+.-...+..+++.+.|+||.|..+-...+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-----------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i 285 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-----------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI 285 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-----------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH
Confidence 468999999999999999999988 444445557999999999999999999999999976544333
Q ss_pred -----HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 137 -----ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 137 -----~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...+..||.+|+|+|+.++...+....+. +...+.|+++|+||+|+....... .+ +.. .
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~------~~-----~~~--~-- 349 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE------SE-----KLA--N-- 349 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccc------hh-----hcc--C--
Confidence 34678899999999999876666666666 566788999999999996543311 00 000 1
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
..|++.+|+++|. |++.|.++|.+++..-
T Consensus 350 -~~~~i~iSa~t~~--------------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 -GDAIISISAKTGE--------------GLDALREAIKQLFGKG 378 (454)
T ss_pred -CCceEEEEecCcc--------------CHHHHHHHHHHHHhhc
Confidence 2369999999998 9999999998877654
No 252
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.57 E-value=2.7e-13 Score=136.41 Aligned_cols=182 Identities=18% Similarity=0.153 Sum_probs=119.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
...+.|+|+|++|+|||||+++|+...... ......|. + ..+..++.+++++||||+. ..+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~~~~~g~-i----~i~~~~~~~i~~vDtPg~~---~~~l 98 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NISDIKGP-I----TVVTGKKRRLTFIECPNDI---NAMI 98 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------cccccccc-E----EEEecCCceEEEEeCCchH---HHHH
Confidence 345789999999999999999998763211 11112231 1 1122367899999999974 5666
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEE-EEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPIL-LLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~Iv-viNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
..+..+|.+++|+|+.++...++..++..+...++|.++ |+||+|+... .....++.+++.+.+...-.. ..|+
T Consensus 99 ~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~~~~~~~~~~l~~~~~~~~~~----~~ki 173 (225)
T cd01882 99 DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK-NKTLRKTKKRLKHRFWTEVYQ----GAKL 173 (225)
T ss_pred HHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc-HHHHHHHHHHHHHHHHHhhCC----CCcE
Confidence 778999999999999999999999999999999999654 9999998642 333455566665533311111 2479
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeee
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMME 271 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~ 271 (639)
+++||++.... .......++-.|...-+.+-...+.-.-|++.+++
T Consensus 174 ~~iSa~~~~~~---------~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~ 219 (225)
T cd01882 174 FYLSGIVHGRY---------PKTEIHNLARFISVMKFRPLNWRNSHPYVLADRME 219 (225)
T ss_pred EEEeeccCCCC---------CHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeee
Confidence 99999987411 11123445555544334443333444455555543
No 253
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=2.1e-14 Score=131.77 Aligned_cols=147 Identities=25% Similarity=0.265 Sum_probs=101.6
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe----ecCceEEEEeCCCCCCchHHHHHHH
Q 006610 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS----WRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~----~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
|+|++|+|||||+++|+..... ...+..|. ....... ..+..+++|||||+.++.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-------------~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-------------PEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-------------Ccccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHh
Confidence 5899999999999999976321 01111111 1222222 2367899999999999988888899
Q ss_pred hhccEEEEEEeCCCCCchhHHHHH-----HHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQTKFVL-----AKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~~l-----~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|+..+........| ......+.|+++++||+|+.......... ....+... ...|
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~----~~~~~~~~------~~~~ 136 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE----LAEQLAKE------LGVP 136 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH----HHHHHHhh------cCCc
Confidence 999999999999987665555433 33455688999999999986543321111 01111111 1367
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
++++|++++. |+.+++++|.
T Consensus 137 ~~~~s~~~~~--------------~i~~~~~~l~ 156 (157)
T cd00882 137 YFETSAKTGE--------------NVEELFEELA 156 (157)
T ss_pred EEEEecCCCC--------------ChHHHHHHHh
Confidence 9999999998 9999999875
No 254
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=1.9e-14 Score=131.18 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=114.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
-..+|.+||..|+|||||+-++......+....+ -|+....+...+..+..++.||||+|++.|...+..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t----------IGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT----------IGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCce----------eeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh
Confidence 3579999999999999999999876443222111 266677777788878899999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHH-HHHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFV-LAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~-l~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.|.|+|+|+|.+..-....... ++.+..+ ++-.++|.||+|++..+.-. .++=.++.++.+
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~----reEG~kfAr~h~------- 148 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVD----REEGLKFARKHR------- 148 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccccc----HHHHHHHHHhhC-------
Confidence 9999999999999876544333343 4444433 34457899999986422211 122334433333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+-++++||++.. +++..|+.++..+
T Consensus 149 ~LFiE~SAkt~~--------------~V~~~FeelveKI 173 (209)
T KOG0080|consen 149 CLFIECSAKTRE--------------NVQCCFEELVEKI 173 (209)
T ss_pred cEEEEcchhhhc--------------cHHHHHHHHHHHH
Confidence 238999999998 8888777776654
No 255
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.56 E-value=2.1e-14 Score=134.27 Aligned_cols=164 Identities=21% Similarity=0.208 Sum_probs=114.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
....+|.|+|.+|+|||||++++...........++ |.....+...+.-+-..++||||.|++.|...-.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI----------gadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~ 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI----------GADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc----------chhheeeEEEEcCeEEEEEEEecccHHHhhhccc
Confidence 346899999999999999999999874322211111 2222333344443446789999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHH-----HHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAK-----ALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~-----~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
..+|.+|.++||+|....-......-|+. +.. ...|+||+.||+|..+... + ....+.........|
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~-r-~VS~~~Aq~WC~s~g--- 151 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS-R-QVSEKKAQTWCKSKG--- 151 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc-c-eeeHHHHHHHHHhcC---
Confidence 88999999999999877655565555543 221 2568999999999865321 1 111223334444333
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++|.+++|||.+. +++..|+.+....-
T Consensus 152 ---nipyfEtSAK~~~--------------NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 152 ---NIPYFETSAKEAT--------------NVDEAFEEIARRAL 178 (210)
T ss_pred ---CceeEEecccccc--------------cHHHHHHHHHHHHH
Confidence 5899999999999 99999998876554
No 256
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.56 E-value=5.6e-15 Score=121.99 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=64.8
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHc-CcEE
Q 006610 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFEL 441 (639)
Q Consensus 364 ~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrre-g~ev 441 (639)
||+|++++++.|.+. .+..+|.++|.+++++||+|++..+ ++++++|+|+||+||+|++++|+++ |+++
T Consensus 1 ~p~Pv~~~~i~p~~~---------~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v 71 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNK---------EDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEV 71 (75)
T ss_dssp SSS-SEEEEEEESSH---------HHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBE
T ss_pred CCCCeEEEEEEECCH---------hHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCee
Confidence 688999999999763 6889999999999999999999998 7888999999999999999999875 9999
Q ss_pred EEeC
Q 006610 442 SVSP 445 (639)
Q Consensus 442 ~vs~ 445 (639)
++++
T Consensus 72 ~~~~ 75 (75)
T PF14492_consen 72 EFGK 75 (75)
T ss_dssp EEE-
T ss_pred EecC
Confidence 9874
No 257
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.55 E-value=7.5e-14 Score=132.65 Aligned_cols=149 Identities=16% Similarity=0.209 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~~~ 139 (639)
+|+++|+.|+|||||+.+++......... +. .+ .. ...+.+++ ..+.||||+|+.+. .+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~-------~~---~~-~~---~~~i~~~~~~~~l~i~D~~g~~~~-----~~ 62 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES-------PE---GG-RF---KKEVLVDGQSHLLLIRDEGGAPDA-----QF 62 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC-------CC---cc-ce---EEEEEECCEEEEEEEEECCCCCch-----hH
Confidence 69999999999999999998653221110 00 01 00 12233344 67999999999763 45
Q ss_pred HhhccEEEEEEeCCCCCchhH-HHHHHHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++++|+|.++.-..+. ..++..+... ++|+++|.||+|+...+...+. .++..++..+.+ .+
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~--~~~~~~~~~~~~------~~ 134 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID--DARARQLCADMK------RC 134 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC--HHHHHHHHHHhC------CC
Confidence 678999999999887665555 4555655543 5789999999997432221111 112223322221 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
+++++||++|. |++++|+.+.+.
T Consensus 135 ~~~e~SAk~~~--------------~i~~~f~~~~~~ 157 (158)
T cd04103 135 SYYETCATYGL--------------NVERVFQEAAQK 157 (158)
T ss_pred cEEEEecCCCC--------------CHHHHHHHHHhh
Confidence 79999999999 999999998764
No 258
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.55 E-value=1.2e-13 Score=137.89 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|+.|+|||||+++++......... ..-+..+.........+...+++|||||+.+|......
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI----------PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCC----------CccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHH
Confidence 35789999999999999999877542211111 11122332222223345678999999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHH-HHHH--HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVL-AKAL--KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l-~~~~--~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+++.+|++++|+|.++....+....| ..+. ..++|+++++||+|+..... ..+...+.... .+.
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~------~~~~~~~~~~~-------~~~ 144 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV------KARQITFHRKK-------NLQ 144 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC------CHHHHHHHHHc-------CCE
Confidence 88999999999999877655444333 2222 14688899999999853211 11111222222 245
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |++..+.+|.+.+.
T Consensus 145 ~~e~Sa~~~~--------------~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 145 YYDISAKSNY--------------NFEKPFLWLARRLT 168 (215)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHHh
Confidence 8999999998 89998888887664
No 259
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.53 E-value=2.6e-13 Score=134.40 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe----ecCceEEEEeCCCCCCchHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS----WRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~----~~~~~i~iIDTPGh~dF~~ev 136 (639)
++|+++|+.|+|||||+.+|.......... ++......+. .++..+.|||||||.+|....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---------------s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~ 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---------------SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKL 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---------------cEeecceEEEeecCCCCceEEEEECCCCHHHHHHH
Confidence 479999999999999999998753221110 0111111111 346789999999999999999
Q ss_pred HHHHhhc-cEEEEEEeCCCCC--chhHHHHHHHH----HH--cCCCcEEEEcCCCCCCCCH
Q 006610 137 ERVVGMV-EGAILVVDAGEGP--LAQTKFVLAKA----LK--YGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 137 ~~~l~~a-D~allVVDa~~g~--~~qt~~~l~~~----~~--~~lp~IvviNKiD~~~~~~ 188 (639)
..+++.+ +++|+|+|+.... ...+..+|..+ .. .++|+++|+||+|+..+.+
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred HHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9999998 9999999998752 22233333222 11 4899999999999876554
No 260
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.53 E-value=1.6e-13 Score=138.70 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=62.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-------hH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF-------GG 134 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF-------~~ 134 (639)
+|+++|.+++|||||+++|++... ......+.|.......+.+++..+++|||||+.+. ..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~------------~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~ 69 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS------------EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR 69 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------------cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHH
Confidence 589999999999999999986521 11223355655666667788999999999998542 34
Q ss_pred HHHHHHhhccEEEEEEeCCCC
Q 006610 135 EVERVVGMVEGAILVVDAGEG 155 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g 155 (639)
++..+++.+|++++|+|+++.
T Consensus 70 ~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 70 QVIAVARTADLILMVLDATKP 90 (233)
T ss_pred HHHHhhccCCEEEEEecCCcc
Confidence 566788999999999998754
No 261
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.52 E-value=1.4e-13 Score=134.37 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev~~ 138 (639)
.+|+|+|..|+|||||+++|...........++. ..-...+.+. ...+++|||||+.+|......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~-------------~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~ 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF-------------ENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc-------------ceEEEEEEECCEEEEEEEEECCCChhccccchh
Confidence 4799999999999999999985422111100100 0001122222 356889999999887655556
Q ss_pred HHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHH-------HHHHHHHHHHHHHHhcCC
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEE-------RCDEVESLVFDLFANLGA 207 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~-------~~~~v~~~i~~l~~~~g~ 207 (639)
.++.+|++|+++|....-..+.. .++..+... .+|+|+|.||+|+...... +... .++...+...++.
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 147 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAKEIGA 147 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHHHhCC
Confidence 77899999999998654333322 344444433 6899999999998532110 0000 1122222333332
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |++++|+.+.+.+.
T Consensus 148 ------~~~~e~Sa~~~~--------------~v~~~f~~l~~~~~ 173 (187)
T cd04129 148 ------KKYMECSALTGE--------------GVDDVFEAATRAAL 173 (187)
T ss_pred ------cEEEEccCCCCC--------------CHHHHHHHHHHHHh
Confidence 368999999999 99999999987653
No 262
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.6e-13 Score=152.19 Aligned_cols=156 Identities=26% Similarity=0.377 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch------H
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------G 134 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------~ 134 (639)
..||++|.+|+|||||+|+|++. +.......|.|+..+...+.++++.+.|+|.||.-++. .
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~------------~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~ 71 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA------------NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEK 71 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc------------CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHH
Confidence 45999999999999999999986 44556678999999999999999999999999965542 1
Q ss_pred HHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 135 EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 135 ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
-+.+++ ...|.+|-|+||+. ......+.-++.+.|+|+|+++|++|... . ..+.=+...+-+.+|
T Consensus 72 Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~--~---~Gi~ID~~~L~~~LG------ 138 (653)
T COG0370 72 VARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAK--K---RGIRIDIEKLSKLLG------ 138 (653)
T ss_pred HHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHH--h---cCCcccHHHHHHHhC------
Confidence 123333 34699999999985 34555666778899999999999999732 1 111111222223334
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
+||+++||++|. |+++|++.+.+..+...
T Consensus 139 -vPVv~tvA~~g~--------------G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 139 -VPVVPTVAKRGE--------------GLEELKRAIIELAESKT 167 (653)
T ss_pred -CCEEEEEeecCC--------------CHHHHHHHHHHhccccc
Confidence 689999999999 99999999998776543
No 263
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=2.5e-13 Score=124.77 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=113.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+-.+|.|+|..||||||++++|+.. |...... |......++.++++.++|||..|+..+..-+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~-----------~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGE-----------DTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCC-----------CccccCC----ccceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 3467999999999999999999976 2222222 333445678889999999999999999999999
Q ss_pred HHhhccEEEEEEeCCCC-CchhHHHHHHHH----HHcCCCcEEEEcCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 139 VVGMVEGAILVVDAGEG-PLAQTKFVLAKA----LKYGLRPILLLNKVDRPAVS-EERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g-~~~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~-~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
++..+|+.|+|||+.+. .+.++...++.+ +-.|.|++++.||.|.+++= .+.+.. .-++.+++ ...
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~-~~~L~~l~-------ks~ 151 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISK-ALDLEELA-------KSH 151 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHH-hhCHHHhc-------ccc
Confidence 99999999999998654 334455444444 33588999999999997542 221111 11222222 123
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++-|||.+|. ++.+-++++++.+
T Consensus 152 ~~~l~~cs~~tge--------------~l~~gidWL~~~l 177 (185)
T KOG0073|consen 152 HWRLVKCSAVTGE--------------DLLEGIDWLCDDL 177 (185)
T ss_pred CceEEEEeccccc--------------cHHHHHHHHHHHH
Confidence 5889999999998 6766677766544
No 264
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.51 E-value=1.7e-13 Score=129.81 Aligned_cols=156 Identities=25% Similarity=0.305 Sum_probs=107.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.++|||||+++|........... ..|.........+....+.+.|||++|+.+|.......++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIP----------TIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSET----------TSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccc----------cccccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999987633221111 1133333333333334567999999999999888888999
Q ss_pred hccEEEEEEeCCCCCchh-HHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 142 MVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
.+|++|+|+|.++.-.-. ...++..+... +.|++++.||.|+...+.-. .++...+...++ +|++
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~----~~~~~~~~~~~~-------~~~~ 139 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS----VEEAQEFAKELG-------VPYF 139 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC----HHHHHHHHHHTT-------SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeccccccccccch----hhHHHHHHHHhC-------CEEE
Confidence 999999999987653332 23444444433 46889999999985422111 122333444433 5799
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+||+++. |+.++|..+++.+
T Consensus 140 e~Sa~~~~--------------~v~~~f~~~i~~i 160 (162)
T PF00071_consen 140 EVSAKNGE--------------NVKEIFQELIRKI 160 (162)
T ss_dssp EEBTTTTT--------------THHHHHHHHHHHH
T ss_pred EEECCCCC--------------CHHHHHHHHHHHH
Confidence 99999998 9999999988753
No 265
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2e-13 Score=122.85 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=114.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
-..++.|+|...+|||||+-+.+..+.....-. .-||....+...-.-+..+++||||.|++.+..-+-.
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvs----------TvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTa 89 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS----------TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTA 89 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceee----------eeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHH
Confidence 346899999999999999999988765432222 2266655554333334578999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhHHH-HHHHHH---HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKF-VLAKAL---KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~-~l~~~~---~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.++|.||++|.+........+ +.-++. ..+.|+|+|.||||+...+.-. .+....+..++|+
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis----~e~g~~l~~~LGf------- 158 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS----HERGRQLADQLGF------- 158 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeee----HHHHHHHHHHhCh-------
Confidence 999999999999987654433333 333333 3488999999999986533211 2334455566675
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
-+++.||+.+. +++++|+.++..+
T Consensus 159 efFEtSaK~Ni--------------nVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 159 EFFETSAKENI--------------NVKQVFERLVDII 182 (193)
T ss_pred HHhhhcccccc--------------cHHHHHHHHHHHH
Confidence 38999999998 8888888877654
No 266
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.5e-13 Score=123.41 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=81.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc---------
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF--------- 132 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF--------- 132 (639)
+|+|+|.+|+|||||+++|+... ........+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-----------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~ 69 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-----------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKE 69 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-----------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc-----------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHH
Confidence 48999999999999999999641 1122333466666655667788899999999997542
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcC
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNK 180 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNK 180 (639)
...+.+.+..+|++++|+|+.+....+...+++.++ .+.|+++|+||
T Consensus 70 ~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 70 IRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 234556668899999999988754556667777776 88999999998
No 267
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2e-13 Score=127.86 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=114.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...++.++|..|+|||.|+-+++...+......+ -|+.......++.-+..+++||||.||+.|..-+..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~T----------iGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~s 74 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLT----------IGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRS 74 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccce----------eeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHH
Confidence 3578999999999999999999877543221111 255555566666667789999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCC-chhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGP-LAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVES-LVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~-~i~~l~~~~g~~~~~~~ 213 (639)
+++.+.|+|||+|.+..- +.....||..++++ ++.++++.||+|+...+. +.+ +-..+.++.|
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~-----Vs~EEGeaFA~ehg------- 142 (216)
T KOG0098|consen 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARRE-----VSKEEGEAFAREHG------- 142 (216)
T ss_pred HhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccc-----ccHHHHHHHHHHcC-------
Confidence 999999999999976543 34444566667666 445678899999965432 222 2222333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++..+||+++. |+++.|..+...+
T Consensus 143 LifmETSakt~~--------------~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 LIFMETSAKTAE--------------NVEEAFINTAKEI 167 (216)
T ss_pred ceeehhhhhhhh--------------hHHHHHHHHHHHH
Confidence 468899999998 8988887765544
No 268
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.7e-13 Score=123.45 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=113.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
-..+|+++|..|+|||.|+.++....+......++ |+....+...+..+..+++||||.|++.|..-+..
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgati----------gvdfmiktvev~gekiklqiwdtagqerfrsitqs 75 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI----------GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQS 75 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee----------eeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHH
Confidence 46899999999999999999998764322211111 45555666666667789999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.|++.|||+|....+.... -+|++.+.++ ++-.|+|.||+|+.+. .++-+++-+-|.+. .+.
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr-----revp~qigeefs~~------qdm 144 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR-----REVPQQIGEEFSEA------QDM 144 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh-----hhhhHHHHHHHHHh------hhh
Confidence 9999999999999776554433 3566666654 4445899999998432 22333333323221 112
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
-++..||+... +++.||..+.-.+
T Consensus 145 yfletsakea~--------------nve~lf~~~a~rl 168 (213)
T KOG0095|consen 145 YFLETSAKEAD--------------NVEKLFLDLACRL 168 (213)
T ss_pred hhhhhcccchh--------------hHHHHHHHHHHHH
Confidence 37889999988 8999988776544
No 269
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.49 E-value=4.4e-13 Score=132.08 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCchHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.+|+++|.+|+|||||+++|++........... +. ...|.... .+.. ....+.+|||||+.++....+.+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~-~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~~ 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPT-GV------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDDY 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCcccc-Cc------cccccCce--eeecCCCCCceEEeCCCCCcccCCHHHH
Confidence 479999999999999999998753211110000 00 00111111 1111 13479999999987643333333
Q ss_pred -----HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH-----------HHHHHHHHHHHHHHH
Q 006610 140 -----VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE-----------ERCDEVESLVFDLFA 203 (639)
Q Consensus 140 -----l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~-----------~~~~~v~~~i~~l~~ 203 (639)
+..+|.+++|.| +.+......+++.+.+.+.|+++|+||+|+...+. ....++.+.+...+.
T Consensus 73 l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 73 LEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred HHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 455788888754 34666777788888888999999999999843222 112223333334443
Q ss_pred hcCCCCccccccEEecccc--cCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 204 NLGATDEQLDFPVLYASAK--EGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~--~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
..+.. .-+|+.+|+. .++ ++..|.++++..+|...
T Consensus 151 ~~~~~----~p~v~~vS~~~~~~~--------------~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 151 EAGVS----EPPVFLVSNFDPSDY--------------DFPKLRETLLKDLPAHK 187 (197)
T ss_pred HcCCC----CCCEEEEeCCChhhc--------------ChHHHHHHHHHHhhHHH
Confidence 33322 1368899998 566 89999999999998654
No 270
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.48 E-value=1.5e-13 Score=126.57 Aligned_cols=137 Identities=23% Similarity=0.264 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC----CCCchHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG----HADFGGEV 136 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG----h~dF~~ev 136 (639)
++|.++|.+|+|||||+++|.+.... ..+...+.|.+ ++||||| +..|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---------------------~~KTq~i~~~~---~~IDTPGEyiE~~~~y~aL 57 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---------------------YKKTQAIEYYD---NTIDTPGEYIENPRFYHAL 57 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---------------------cCccceeEecc---cEEECChhheeCHHHHHHH
Confidence 57999999999999999999865210 11223344433 5699999 45566666
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
......||.+++|.||++....-- -..+..++.|+|=||||+|+.. +... .+.....+..-|+.. +
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~~-~~~~----i~~a~~~L~~aG~~~------i 123 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLPS-DDAN----IERAKKWLKNAGVKE------I 123 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCcc-chhh----HHHHHHHHHHcCCCC------e
Confidence 666678999999999987532111 1234456789999999999973 1222 233445566667653 7
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
+++|+.+|. |+++|.+.|-
T Consensus 124 f~vS~~~~e--------------Gi~eL~~~L~ 142 (143)
T PF10662_consen 124 FEVSAVTGE--------------GIEELKDYLE 142 (143)
T ss_pred EEEECCCCc--------------CHHHHHHHHh
Confidence 999999999 9999999874
No 271
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.46 E-value=1.1e-12 Score=129.10 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHH-HHcCC-----CCCccccc--cccccccccceeEeee-eEEEeecCceEEEEeCCCCCC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLL-RQCGA-----DIPHERAM--DSISLERERGITIASK-VTGISWRENELNMVDTPGHAD 131 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll-~~~g~-----~~~~~~v~--D~~~~e~ergiTi~~~-~~~~~~~~~~i~iIDTPGh~d 131 (639)
.+|+++|..++|||||+.+.. ..... .....++. |... ....+..+ ...+....+.++||||+|+.+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~----~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~ 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYR----VCQEVLERSRDVVDGVSVSLRLWDTFGDHD 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceeccccee----EEeeeccccceeeCCEEEEEEEEeCCCChh
Confidence 589999999999999996443 22110 00111110 0000 00000000 001223357899999999875
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHH--HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHH--------------HH
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERC--------------DE 193 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~--------------~~ 193 (639)
. ....+++.+|++|+|+|.++....+.. .|+..+.. .+.|+|+|.||+|+...+.... ..
T Consensus 79 ~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T cd01873 79 K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI 156 (195)
T ss_pred h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence 3 234478899999999998876544433 24444443 3678999999999854211000 00
Q ss_pred -HHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 194 -VESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 194 -v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
..++..++..+++ ++++++||++|. |++++|+.+++.
T Consensus 157 V~~~e~~~~a~~~~-------~~~~E~SAkt~~--------------~V~e~F~~~~~~ 194 (195)
T cd01873 157 LPPETGRAVAKELG-------IPYYETSVVTQF--------------GVKDVFDNAIRA 194 (195)
T ss_pred cCHHHHHHHHHHhC-------CEEEEcCCCCCC--------------CHHHHHHHHHHh
Confidence 1123334444443 469999999999 999999998763
No 272
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.7e-13 Score=128.88 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=117.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev 136 (639)
-+...+|+++|.+++|||-|+.++....+......+ -|+.+......+..+-.+.+||||.|++.|..-.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksT----------IGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit 80 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKST----------IGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT 80 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccc----------eeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence 345789999999999999999999877443222222 2666666666666677889999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.|-||+||+|.+...+- ...+|++.++.+ ++++++|.||+|+.+.+.-.. ++...+.+..+
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~t----e~~k~~Ae~~~------ 150 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPT----EDGKAFAEKEG------ 150 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccch----hhhHhHHHhcC------
Confidence 9999999999999998765443 445688888776 678899999999965322111 12222222222
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+++++||+.+. +++..|+.++..+
T Consensus 151 -l~f~EtSAl~~t--------------NVe~aF~~~l~~I 175 (222)
T KOG0087|consen 151 -LFFLETSALDAT--------------NVEKAFERVLTEI 175 (222)
T ss_pred -ceEEEecccccc--------------cHHHHHHHHHHHH
Confidence 358999999998 8887777776544
No 273
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.45 E-value=4.1e-13 Score=120.88 Aligned_cols=156 Identities=23% Similarity=0.300 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
..+.++|-.++|||||++......+.. +. +-|.......+.-.+..+.+||.||+..|...++++.
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~e----------dm----iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWeryc 86 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLE----------DM----IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYC 86 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchh----------hh----cccccceeEEeccCceEEEEEecCCCccHHHHHHHHh
Confidence 358999999999999999886532211 11 2333344445555678899999999999999999999
Q ss_pred hhccEEEEEEeCCCCC-chhHH----HHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc-cccc
Q 006610 141 GMVEGAILVVDAGEGP-LAQTK----FVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE-QLDF 214 (639)
Q Consensus 141 ~~aD~allVVDa~~g~-~~qt~----~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~-~~~~ 214 (639)
+.++++++||||.+.- ....+ .++....-.|+|++|..||.|++++-.. .++..++|..+- ..++
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---------~~li~rmgL~sitdREv 157 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---------IALIERMGLSSITDREV 157 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---------HHHHHHhCccccccceE
Confidence 9999999999987732 12222 3444444569999999999999876321 123344444321 2246
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
-++.+|+++.. +++.++++|+++..
T Consensus 158 cC~siScke~~--------------Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 158 CCFSISCKEKV--------------NIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEEcCCc--------------cHHHHHHHHHHHhh
Confidence 68889999988 99999999998753
No 274
>PLN00023 GTP-binding protein; Provisional
Probab=99.44 E-value=1.7e-12 Score=134.95 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=82.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-------------cCceEEEE
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-------------RENELNMV 124 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-------------~~~~i~iI 124 (639)
....+|+++|+.++|||||+.+++..........+ -|.++..+...+.. +.+.++||
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pT----------IG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIW 88 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQT----------IGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELW 88 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCc----------eeeeEEEEEEEECCcccccccccccCCceEEEEEE
Confidence 34578999999999999999999875322111111 13333222222211 23679999
Q ss_pred eCCCCCCchHHHHHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHHc---------------CCCcEEEEcCCCCCC
Q 006610 125 DTPGHADFGGEVERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY---------------GLRPILLLNKVDRPA 185 (639)
Q Consensus 125 DTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~---------------~lp~IvviNKiD~~~ 185 (639)
||+|+..|......+++.+|++|+|+|.++.-.. ....|+..+... ++|+|||.||+|+..
T Consensus 89 DTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 89 DVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999998764333 233455555543 378999999999854
No 275
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.44 E-value=6.1e-13 Score=114.83 Aligned_cols=89 Identities=29% Similarity=0.335 Sum_probs=75.7
Q ss_pred ceeEEEeeeeec-ccceEEEEEEEeeeeecCCEEEEeeccCC--CCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec
Q 006610 263 FQMLVTMMEKDF-YLGRILTGRVSSGVVSVGDKVHGLRITDS--GTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (639)
Q Consensus 263 ~~~~V~~~~~d~-~~G~i~~grV~sG~l~~gd~v~~~~~~~~--~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~ 339 (639)
+.++|||+.+++ +.|+++++|||+|+|+.||.|++...+.. ..+.....++.+|+.+.|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 467899999999 99999999999999999999988753210 001235678999999999999999999999999999
Q ss_pred CCCCCCcCCeee
Q 006610 340 GMTKPSIGHTVA 351 (639)
Q Consensus 340 gl~~~~~Gdtl~ 351 (639)
|++++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999999854
No 276
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.43 E-value=9.6e-13 Score=133.13 Aligned_cols=153 Identities=22% Similarity=0.383 Sum_probs=110.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCce-EEEEeCCCCCC------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENE-LNMVDTPGHAD------ 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~-i~iIDTPGh~d------ 131 (639)
.+-+|+++|-+|+|||||+++|... ...+....-+|+......+.|+++. +.+-|.||...
T Consensus 195 siadvGLVG~PNAGKSTLL~als~A------------KpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nk 262 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRA------------KPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNK 262 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhcc------------CCcccccceeeeccccceeeccccceeEeccCccccccccccC
Confidence 3678999999999999999999876 3344445577888888888898876 99999999542
Q ss_pred -chHHHHHHHhhccEEEEEEeCCCC----CchhHHHHHHHHHHc-----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 132 -FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 132 -F~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
......+.+..|+..++|||...+ +..|-..++..+..+ ..|.++|+||+|.+.+... . +..+
T Consensus 263 GlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~----~---l~~L 335 (366)
T KOG1489|consen 263 GLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN----L---LSSL 335 (366)
T ss_pred cccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH----H---HHHH
Confidence 344556677779999999998765 233444455555443 4578999999998632221 1 2233
Q ss_pred HHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
...+.-. -|+++||+.++ |+.+|++.|..
T Consensus 336 ~~~lq~~------~V~pvsA~~~e--------------gl~~ll~~lr~ 364 (366)
T KOG1489|consen 336 AKRLQNP------HVVPVSAKSGE--------------GLEELLNGLRE 364 (366)
T ss_pred HHHcCCC------cEEEeeecccc--------------chHHHHHHHhh
Confidence 3333321 29999999998 99999998754
No 277
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.43 E-value=1e-12 Score=113.65 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=73.1
Q ss_pred ceeEEEeeeeeccc-ceEEEEEEEeeeeecCCEEEEeeccCCC--CceeEEeEEEEEEeeeCCceeeeccCCCCceEEec
Q 006610 263 FQMLVTMMEKDFYL-GRILTGRVSSGVVSVGDKVHGLRITDSG--TEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (639)
Q Consensus 263 ~~~~V~~~~~d~~~-G~i~~grV~sG~l~~gd~v~~~~~~~~~--~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~ 339 (639)
+.++|||+.++++. |+++++|||||+|++||.|++...+... ......++|.+|+.+.|.++.++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 46899999999998 6799999999999999999886432000 01235689999999999999999999999999999
Q ss_pred CCCCCCcCCee
Q 006610 340 GMTKPSIGHTV 350 (639)
Q Consensus 340 gl~~~~~Gdtl 350 (639)
|+++...+.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99987777654
No 278
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.42 E-value=5.7e-12 Score=124.55 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe-----ecCceEEEEeCCCCCCchHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-----WRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~-----~~~~~i~iIDTPGh~dF~~ev 136 (639)
+|+++|..++|||||+.+++..........+ -|.++..+...+. -+.+.++||||+|+.+|....
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~T----------ig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWT----------VGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcc----------eeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH
Confidence 6999999999999999999976332211111 1222322222221 124679999999999999888
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH----------------------cCCCcEEEEcCCCCCC
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----------------------YGLRPILLLNKVDRPA 185 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~----------------------~~lp~IvviNKiD~~~ 185 (639)
..+++.+|++|+|+|.++.-..+.. .|+..+.. .++|+|+|.||+|+..
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 8999999999999998876544333 44444433 2589999999999854
No 279
>PRK09866 hypothetical protein; Provisional
Probab=99.41 E-value=6.6e-12 Score=138.87 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=84.8
Q ss_pred CceEEEEeCCCCCC-----chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcC--CCcEEEEcCCCCCCCCHHH
Q 006610 118 ENELNMVDTPGHAD-----FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG--LRPILLLNKVDRPAVSEER 190 (639)
Q Consensus 118 ~~~i~iIDTPGh~d-----F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~--lp~IvviNKiD~~~~~~~~ 190 (639)
..++.|+||||... +...+..++..+|.+|+|+|+..+.....+.+++.+.+.+ .|+|+|+||+|+.+-....
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 36899999999532 4445667899999999999999888888888888888877 4999999999985322111
Q ss_pred HHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 191 ~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
.+.+.+.+...+....... -.++++||++|. |++.|++.|..+
T Consensus 309 kE~Lle~V~~~L~q~~i~f----~eIfPVSAlkG~--------------nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITP----QQIFPVSSMWGY--------------LANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCC----ceEEEEeCCCCC--------------CHHHHHHHHHhC
Confidence 2333333333333222221 139999999999 999999999875
No 280
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.3e-12 Score=116.60 Aligned_cols=147 Identities=22% Similarity=0.208 Sum_probs=106.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+-..++.++|+.|.|||.|+.+++.....+.. ...-|+...+....+..+..+++||||.|++.|..-+.
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDds----------sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDS----------SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccc----------cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHH
Confidence 34678999999999999999999987543222 22337777777777777888999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchh-HHHHHHHHHHcCCC---cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKYGLR---PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~~lp---~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.|-|++||+|++..-... ...|+.-++.+--| +|++.||-|+...+.-.+.+.. .+.. +. +
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs----~Faq-----En--e 145 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS----RFAQ-----EN--E 145 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHH----hhhc-----cc--c
Confidence 9999999999999987654333 33466666665444 5678899998665443322221 1111 11 2
Q ss_pred ccEEecccccCC
Q 006610 214 FPVLYASAKEGW 225 (639)
Q Consensus 214 ~Pvi~~SA~~g~ 225 (639)
+-+.+.||++|.
T Consensus 146 l~flETSa~TGe 157 (214)
T KOG0086|consen 146 LMFLETSALTGE 157 (214)
T ss_pred eeeeeecccccc
Confidence 347899999998
No 281
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=1.8e-12 Score=116.75 Aligned_cols=159 Identities=21% Similarity=0.239 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+.....|+|.+|+|||+|+-++....+...+-.+ -|+........+.....++.||||+|++.|...+..
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitT----------iGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITT----------IGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEE----------eeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHH
Confidence 3466789999999999999888766443322211 144455555556656689999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+++..+++++|+|.+.|.. ...++|++.++.. .+|-++|.||.|.++.+.-. .++........| +.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~----t~dAr~~A~~mg-------ie 145 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVD----TEDARAFALQMG-------IE 145 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeee----hHHHHHHHHhcC-------ch
Confidence 9999999999999887754 5567788887764 67889999999986533211 122233333333 34
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++.||+... +++..|..|.+.+
T Consensus 146 ~FETSaKe~~--------------NvE~mF~cit~qv 168 (198)
T KOG0079|consen 146 LFETSAKENE--------------NVEAMFHCITKQV 168 (198)
T ss_pred heehhhhhcc--------------cchHHHHHHHHHH
Confidence 8999999998 8888888776554
No 282
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.40 E-value=2.5e-12 Score=126.59 Aligned_cols=162 Identities=18% Similarity=0.216 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------- 133 (639)
+||+++|.+|+|||||+|+|++..... .....++.|.........+.+.++++|||||..|+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~----------~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~ 70 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFE----------SKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS 70 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccc----------cccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH
Confidence 589999999999999999999763211 111234677777777788899999999999987763
Q ss_pred HHHHHHH----hhccEEEEEEeCCCCCchhHHHHHHHHHHc-C----CCcEEEEcCCCCCCCC-HHHHHH-HHHHHHHHH
Q 006610 134 GEVERVV----GMVEGAILVVDAGEGPLAQTKFVLAKALKY-G----LRPILLLNKVDRPAVS-EERCDE-VESLVFDLF 202 (639)
Q Consensus 134 ~ev~~~l----~~aD~allVVDa~~g~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~~~~-~~~~~~-v~~~i~~l~ 202 (639)
.+..+.+ ..+|++|+|+|+.. ........++.+.+. | .++|+++|+.|..... .+.+.. ....+..++
T Consensus 71 ~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~ 149 (196)
T cd01852 71 KEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL 149 (196)
T ss_pred HHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH
Confidence 1222222 34689999999987 777777777777653 3 4678999999975432 111111 113344455
Q ss_pred HhcCCCCccccccEEecc-----cccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 203 ANLGATDEQLDFPVLYAS-----AKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~S-----A~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
...+.. ++..+ +..+. ++..||+.|.+.++.
T Consensus 150 ~~c~~r-------~~~f~~~~~~~~~~~--------------q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 150 EKCGGR-------YVAFNNKAKGEEQEQ--------------QVKELLAKVESMVKE 185 (196)
T ss_pred HHhCCe-------EEEEeCCCCcchhHH--------------HHHHHHHHHHHHHHh
Confidence 444321 22222 23333 899999999887764
No 283
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=8.8e-12 Score=127.37 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=87.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF------ 132 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF------ 132 (639)
..++|+|+|++|+|||||+.++... ..+....+-+|-.....+++++..++++|||||.-|-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~A------------kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTA------------KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcC------------CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 4789999999999999999999876 3344445566667788899999999999999997662
Q ss_pred --hHHHHHHHhh-ccEEEEEEeCCCC----CchhHHHHHHHH-HHcCCCcEEEEcCCCCCCCCHHHHHHHH
Q 006610 133 --GGEVERVVGM-VEGAILVVDAGEG----PLAQTKFVLAKA-LKYGLRPILLLNKVDRPAVSEERCDEVE 195 (639)
Q Consensus 133 --~~ev~~~l~~-aD~allVVDa~~g----~~~qt~~~l~~~-~~~~lp~IvviNKiD~~~~~~~~~~~v~ 195 (639)
-.....||+- .+.+|+++|+++. +..|-. +|+.. ..++.|+++|+||+|. .+.++.+++.
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~nK~D~--~~~e~~~~~~ 302 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVINKIDI--ADEEKLEEIE 302 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcCCCeEEEEecccc--cchhHHHHHH
Confidence 1223345543 4678899997653 233333 44444 4457789999999998 4455444443
No 284
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.38 E-value=3.1e-11 Score=125.10 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=94.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchH---
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG--- 134 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~--- 134 (639)
..||+++|+.|+|||||+++|+.......... . +.......+.+++......+..++ .+++||||||+.|+..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~-~-~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP-P-DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC-C-CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 46899999999999999999987633211000 0 001112233444555555566665 5799999999877642
Q ss_pred ------------------HHHHHHh-------hccEEEEEEeCC-CCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH
Q 006610 135 ------------------EVERVVG-------MVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 135 ------------------ev~~~l~-------~aD~allVVDa~-~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (639)
+..+..+ .+|++++++++. .++.+....+++.+.. ++|+|+|+||+|+. +.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l--~~ 158 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTL--TP 158 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcC--CH
Confidence 1111122 368899999976 4777888888888875 89999999999984 34
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 006610 189 ERCDEVESLVFDLFANLG 206 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g 206 (639)
.......+.+.+.+...+
T Consensus 159 ~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 159 EELKEFKQRIMEDIEEHN 176 (276)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 444555666666666554
No 285
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=6.2e-12 Score=125.71 Aligned_cols=166 Identities=18% Similarity=0.297 Sum_probs=113.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeee-eEEEeecCceEEEEeCCCCCC----
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASK-VTGISWRENELNMVDTPGHAD---- 131 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~-~~~~~~~~~~i~iIDTPGh~d---- 131 (639)
....-||.|+|..|+|||||+|+|+....... ..-|.+.... .....+++..++||||||..|
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v------------~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~ 103 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV------------SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK 103 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee------------eecccCCCchhhHHhhccccceEEecCCCcccchhh
Confidence 34567999999999999999999995422110 0001111111 112234568899999999877
Q ss_pred ---chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCcEEEEcCCCCCCC----CH------HHHHHHH-
Q 006610 132 ---FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAV----SE------ERCDEVE- 195 (639)
Q Consensus 132 ---F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~----~~------~~~~~v~- 195 (639)
+...+...+...|.+++++|+.+.-.......++..... +.+.|+++|.+|+..- +. ....+..
T Consensus 104 D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~ 183 (296)
T COG3596 104 DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIE 183 (296)
T ss_pred hHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHH
Confidence 555677888999999999999887777777777766544 4689999999998431 11 1111111
Q ss_pred ---HHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 196 ---SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 196 ---~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
+.+.+++.. --|+++.|+..+| |++.|+.+++..+|...
T Consensus 184 ~k~~~~~~~~q~--------V~pV~~~~~r~~w--------------gl~~l~~ali~~lp~e~ 225 (296)
T COG3596 184 EKAEALGRLFQE--------VKPVVAVSGRLPW--------------GLKELVRALITALPVEA 225 (296)
T ss_pred HHHHHHHHHHhh--------cCCeEEeccccCc--------------cHHHHHHHHHHhCcccc
Confidence 122233322 2589999999999 99999999999999543
No 286
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.34 E-value=2e-12 Score=116.11 Aligned_cols=113 Identities=25% Similarity=0.256 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+|+|+.|+|||||+++|+..... +........+.++......+......+.++|++|+..|.......+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhh
Confidence 5899999999999999999987432 01111222344555445555555556999999999888776666799
Q ss_pred hccEEEEEEeCCCCCc-hhHHHH---HHHHHH--cCCCcEEEEcCCC
Q 006610 142 MVEGAILVVDAGEGPL-AQTKFV---LAKALK--YGLRPILLLNKVD 182 (639)
Q Consensus 142 ~aD~allVVDa~~g~~-~qt~~~---l~~~~~--~~lp~IvviNKiD 182 (639)
.+|++|+|+|+.+... .+...+ +..... .++|+|+|.||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999987542 222223 333332 3589999999998
No 287
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=126.15 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=67.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------c
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------F 132 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-------F 132 (639)
.-.|+++|.+++|||||+++|++.. ........+|...-...++|++.+|+|+|+||... -
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~------------seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr 130 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK------------SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR 130 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC------------ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC
Confidence 4679999999999999999998751 12222335666677778899999999999998543 2
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCC
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGP 156 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~ 156 (639)
+.++....|.||.+++|+|+.+..
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCCh
Confidence 357788899999999999998654
No 288
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.34 E-value=1.2e-11 Score=123.23 Aligned_cols=166 Identities=21% Similarity=0.213 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEe-eeeEEEeec-CceEEEEeCCCCCCchHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIA-SKVTGISWR-ENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~-~~~~~~~~~-~~~i~iIDTPGh~dF~~ev~~ 138 (639)
.+|+++|..|+|||||+++|......... ...+... .+.....+. ..++.+|||+|+.+|...+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY------------PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC------------CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHH
Confidence 78999999999999999999987432221 1111111 111111111 467999999999999999999
Q ss_pred HHhhccEEEEEEeCCC--CCchhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHH-----HHHHHhcCCC
Q 006610 139 VVGMVEGAILVVDAGE--GPLAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLV-----FDLFANLGAT 208 (639)
Q Consensus 139 ~l~~aD~allVVDa~~--g~~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i-----~~l~~~~g~~ 208 (639)
+.+.++++++|+|... .....++.+...+... +.|+++|.||+|+....... ..+.+.. ..........
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSS-EEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHH-HHHHhhhhcCcchhhhHhHHhh
Confidence 9999999999999764 4455566666666654 48999999999997654321 1111110 0000000000
Q ss_pred CccccccEEecccc--cCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 209 DEQLDFPVLYASAK--EGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~--~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
........+.+|++ .+. ++..++..+...+.
T Consensus 153 ~~~~~~~~~~~s~~~~~~~--------------~v~~~~~~~~~~~~ 185 (219)
T COG1100 153 PEVANPALLETSAKSLTGP--------------NVNELFKELLRKLL 185 (219)
T ss_pred hhhcccceeEeecccCCCc--------------CHHHHHHHHHHHHH
Confidence 00011227889998 776 88888888877664
No 289
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=121.15 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=113.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..|+|||+|+-+++...+...+..++- +...+...+......+.|+||+|+.+|..+...+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-----------d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-----------DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-----------ccceEEEEECCEEEEEEEEcCCCcccChHHHHHh
Confidence 46899999999999999999998765544333222 2233444444445678899999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|+.++|++.++....+ ...++.++.+ ..+|+++|.||+|+...+... .++...+... +.+
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~----~eeg~~la~~-------~~~ 140 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS----EEEGKALARS-------WGC 140 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC----HHHHHHHHHh-------cCC
Confidence 99999999999987754433 3334444422 357999999999996543221 1222233222 346
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||+..+ +++++|..+++.+-.
T Consensus 141 ~f~E~Sak~~~--------------~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 141 AFIETSAKLNY--------------NVDEVFYELVREIRL 166 (196)
T ss_pred cEEEeeccCCc--------------CHHHHHHHHHHHHHh
Confidence 79999999998 999999999876543
No 290
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=2.6e-11 Score=124.10 Aligned_cols=117 Identities=22% Similarity=0.241 Sum_probs=77.8
Q ss_pred CceEEEEeCCCCCCc---hHHHH---HHHhh--ccEEEEEEeCCCCCchhHHHHHHHH-----HHcCCCcEEEEcCCCCC
Q 006610 118 ENELNMVDTPGHADF---GGEVE---RVVGM--VEGAILVVDAGEGPLAQTKFVLAKA-----LKYGLRPILLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF---~~ev~---~~l~~--aD~allVVDa~~g~~~qt~~~l~~~-----~~~~lp~IvviNKiD~~ 184 (639)
+..+.||||||+.++ ..... +.+.. .+.+++|+|+..+..+.+......+ ...++|+++|+||+|..
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 347999999998763 22222 22332 8999999999887776665433322 25799999999999986
Q ss_pred CCCHHHHHHHHHHHH------------------------HHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccc
Q 006610 185 AVSEERCDEVESLVF------------------------DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRN 240 (639)
Q Consensus 185 ~~~~~~~~~v~~~i~------------------------~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g 240 (639)
..+. .++..+.+. +++...+. ..+++++|++++. |
T Consensus 176 ~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~-----~~~vi~iSa~~~~--------------g 234 (253)
T PRK13768 176 SEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL-----PVRVIPVSAKTGE--------------G 234 (253)
T ss_pred Cchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC-----CCcEEEEECCCCc--------------C
Confidence 5322 122222111 11222221 2468999999998 9
Q ss_pred hHHHHHHHHhhCCCC
Q 006610 241 MSQLLDAIIRHVPPP 255 (639)
Q Consensus 241 l~~Lld~I~~~lP~p 255 (639)
+++|+++|.+++|+-
T Consensus 235 l~~L~~~I~~~l~~~ 249 (253)
T PRK13768 235 FDELYAAIQEVFCGG 249 (253)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999763
No 291
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.6e-11 Score=115.94 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=115.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+-.+|.++|--+|||||++.+|-...- ...--|+......+.|++..+++||..|+..+...+..
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~---------------vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEI---------------VTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCc---------------ccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 356899999999999999888754311 11134667778889999999999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++..+++|+|||+++... ...+ ++.+.+.. .+.|++++.||.|.+++-. ..++.+.+....... ..
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als------~~ei~~~L~l~~l~~--~~ 152 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS------AAEITNKLGLHSLRS--RN 152 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC------HHHHHhHhhhhccCC--CC
Confidence 9999999999999886422 2222 33333332 3778999999999987643 123333333222332 23
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+-+..++|.+|. |+.+-++++.+.+.
T Consensus 153 w~iq~~~a~~G~--------------GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 153 WHIQSTCAISGE--------------GLYEGLDWLSNNLK 178 (181)
T ss_pred cEEeeccccccc--------------cHHHHHHHHHHHHh
Confidence 558889999998 99999999987664
No 292
>COG2262 HflX GTPases [General function prediction only]
Probab=99.28 E-value=3.3e-11 Score=126.84 Aligned_cols=154 Identities=22% Similarity=0.234 Sum_probs=107.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCC-----
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHAD----- 131 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~d----- 131 (639)
..++.|+++|..|+|||||+|+|+.. ....+.....|.+.+...+.+. +..+.+-||-|+.+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~------------~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~ 257 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGA------------DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP 257 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhcc------------CeeccccccccccCceeEEEeCCCceEEEecCccCcccCChH
Confidence 45789999999999999999999854 1222334456677777777776 68999999999765
Q ss_pred ----chHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 132 ----FGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 132 ----F~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
|... ..-...+|.+|.|||+++.- ..+-..+.+.+.+ ..+|+|+|.||+|+..... ....+ .
T Consensus 258 LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~----~ 327 (411)
T COG2262 258 LVEAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAEL----E 327 (411)
T ss_pred HHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhh----h
Confidence 2222 22345689999999988763 2333334444444 4679999999999853211 11111 1
Q ss_pred hcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.. . . +.+++||++|+ |++.|++.|.+.++.
T Consensus 328 ~~-~-----~-~~v~iSA~~~~--------------gl~~L~~~i~~~l~~ 357 (411)
T COG2262 328 RG-S-----P-NPVFISAKTGE--------------GLDLLRERIIELLSG 357 (411)
T ss_pred hc-C-----C-CeEEEEeccCc--------------CHHHHHHHHHHHhhh
Confidence 10 0 1 38999999999 999999999998874
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.28 E-value=4.4e-11 Score=126.05 Aligned_cols=170 Identities=21% Similarity=0.202 Sum_probs=102.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc---------c------ccccccccc---cccceeEeeeeEE-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH---------E------RAMDSISLE---RERGITIASKVTG------- 113 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~---------~------~v~D~~~~e---~ergiTi~~~~~~------- 113 (639)
+...|+|.|.+|+|||||+++|.......... . ...|....+ ...+.-+.+....
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 45789999999999999999976553211100 0 111222221 1122222221111
Q ss_pred ---------EeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHH--HHHHHHHcCCCcEEEEcCCC
Q 006610 114 ---------ISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF--VLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 114 ---------~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~--~l~~~~~~~lp~IvviNKiD 182 (639)
+...++.+.||||+|...-. +. +...||.+++|++...|-.-|... .++.+ -|+|+||+|
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~--~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaD 205 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSE--TA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKAD 205 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccch--hH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhc
Confidence 11236899999999987432 22 577899999998754444333322 23333 489999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 183 ~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+.... .......++...+.........+..|++++||++|. |+++|++.|.+++|
T Consensus 206 l~~~~--~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~--------------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 206 GDNKT--AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE--------------GIDEIWQAIEDHRA 260 (332)
T ss_pred ccchh--HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 86432 223344444444432221111233589999999998 99999999999876
No 294
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.2e-11 Score=107.02 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=104.1
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG 134 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ 134 (639)
++...+.+-.|+|..|+|||.|+.++....+......++ |+........+.....++.||||.|++.|..
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphti----------gvefgtriievsgqkiklqiwdtagqerfra 75 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI----------GVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 75 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCccc----------ceecceeEEEecCcEEEEEEeecccHHHHHH
Confidence 344568899999999999999999998875432221111 3333444445555667899999999999999
Q ss_pred HHHHHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHcCCC---cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 135 EVERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGLR---PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~~lp---~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
-+..+++.+.++++|+|.+.... .....|+.-++.+--| ++++.||.|++..+...+++ ...+.++.|.
T Consensus 76 vtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yee----ak~faeengl--- 148 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEE----AKEFAEENGL--- 148 (215)
T ss_pred HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHH----HHHHHhhcCe---
Confidence 99999999999999999875433 2333455556655444 56788999996544322232 2233333332
Q ss_pred cccccEEecccccCC
Q 006610 211 QLDFPVLYASAKEGW 225 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~ 225 (639)
-++.+||++|.
T Consensus 149 ----~fle~saktg~ 159 (215)
T KOG0097|consen 149 ----MFLEASAKTGQ 159 (215)
T ss_pred ----EEEEecccccC
Confidence 38999999998
No 295
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.5e-11 Score=131.17 Aligned_cols=161 Identities=21% Similarity=0.217 Sum_probs=115.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-c-----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-F----- 132 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-F----- 132 (639)
.-.+|||+|.+|+|||||+|+|.+. |..-...+.|.|-++-.+.++.+++++.|+||.|... -
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~-----------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRE-----------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIE 335 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcC-----------CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhH
Confidence 3479999999999999999999987 5666777889999999999999999999999999765 1
Q ss_pred ---hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcC------------CCcEEEEcCCCCCCCCHHHHHHHHHH
Q 006610 133 ---GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG------------LRPILLLNKVDRPAVSEERCDEVESL 197 (639)
Q Consensus 133 ---~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~------------lp~IvviNKiD~~~~~~~~~~~v~~~ 197 (639)
.......+..+|.+++|+||.++.+.+...+.+.+...+ -|.|+++||+|....-+ +....
T Consensus 336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~----~~~~~ 411 (531)
T KOG1191|consen 336 ALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP----EMTKI 411 (531)
T ss_pred HHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc----cccCC
Confidence 123356778899999999998888777777777766553 35677788888643100 00000
Q ss_pred HHHHHHhcCCCCcccccc-EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 198 VFDLFANLGATDEQLDFP-VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 198 i~~l~~~~g~~~~~~~~P-vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
...+....+.. .+| +.++|++++. |+..|.+++.+.+
T Consensus 412 ~~~~~~~~~~~----~~~i~~~vs~~tke--------------g~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PVVYPSAEGRS----VFPIVVEVSCTTKE--------------GCERLSTALLNIV 449 (531)
T ss_pred ceeccccccCc----ccceEEEeeechhh--------------hHHHHHHHHHHHH
Confidence 00000001111 234 4448888888 9999988887654
No 296
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.25 E-value=3.2e-11 Score=116.03 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=68.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee---cCceEEEEeCCCCCCchHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---RENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~---~~~~i~iIDTPGh~dF~~ev 136 (639)
.+.|.|+|+.|+|||+|..+|...... .++ .++ .....+.. .+..+.+||+|||..+....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~-----------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~ 66 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTV-----------TSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKL 66 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B--------------S-SEEEECCGSSTCGTCECEEEETT-HCCCHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----Cee-----------ccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHH
Confidence 468999999999999999999986221 111 111 11112222 45689999999999988877
Q ss_pred HHH---HhhccEEEEEEeCCCCCchhHH---H-HHHHH---H--HcCCCcEEEEcCCCCCCCCH
Q 006610 137 ERV---VGMVEGAILVVDAGEGPLAQTK---F-VLAKA---L--KYGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 137 ~~~---l~~aD~allVVDa~~g~~~qt~---~-~l~~~---~--~~~lp~IvviNKiD~~~~~~ 188 (639)
... +..+.++|+|||+.. ...+-+ + +...+ . ..++|++|+.||.|+..+.+
T Consensus 67 ~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 67 LDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred HHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 665 889999999999874 222222 2 21211 1 24778999999999987665
No 297
>PTZ00099 rab6; Provisional
Probab=99.24 E-value=5.4e-11 Score=115.11 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=84.8
Q ss_pred EEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCCcEEEEcCCCCCCCCH
Q 006610 113 GISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 113 ~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~ 188 (639)
.+..+..+++||||||+..|...+..+++.+|++|+|+|+++....+ ...++..+.. .++|+|+|+||+|+.....
T Consensus 23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 102 (176)
T PTZ00099 23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRK 102 (176)
T ss_pred EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 33334578999999999999999999999999999999998754322 2344444433 2567899999999854322
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
.... +...+....+ ++++++||++|. |++++|++|.+.+|...
T Consensus 103 v~~~----e~~~~~~~~~-------~~~~e~SAk~g~--------------nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 103 VTYE----EGMQKAQEYN-------TMFHETSAKAGH--------------NIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCHH----HHHHHHHHcC-------CEEEEEECCCCC--------------CHHHHHHHHHHHHHhcc
Confidence 1111 1222222222 358899999999 99999999999987644
No 298
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5.6e-11 Score=110.45 Aligned_cols=168 Identities=20% Similarity=0.205 Sum_probs=117.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC-CCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG-ADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g-~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.-.+|.|+|.-++|||||++++-..-- +-. .++.. +--.|+.....++...+..+.+||.-|+......+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~----~l~~~----ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~ 87 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYG----GLNPS----KITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWK 87 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhc----CCCHH----HeecccceeecceeeccceeEEEEcCChHHHHHHHH
Confidence 346899999999999999999854311 000 00000 012344555566667788999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCC-c----hhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGP-L----AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~-~----~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.++..|+++++||||.+.- . .+-+.+...-...|+|+++.+||-|+.++-. ..+ ++.++++....+ ..
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~E-l~~~~~~~e~~~----~r 160 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAE-LDGVFGLAELIP----RR 160 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHH-HHHHhhhhhhcC----Cc
Confidence 9999999999999998732 2 2233455555567999999999999965422 122 223333322222 23
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+.|+.++||.+|. |+++-.++++..++..
T Consensus 161 d~~~~pvSal~ge--------------gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGE--------------GVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcc--------------cHHHHHHHHHHHHhhc
Confidence 5789999999999 8888888888877654
No 299
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.22 E-value=1.8e-11 Score=111.59 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=106.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|..=+|||||+-++....++.....++ .-++..+...++-....++||||.|++.|-..=.-+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl----------QASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL----------QASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH----------HHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence 5789999999999999999998765432111111 011122223333344579999999999997766678
Q ss_pred HhhccEEEEEEeCCCCCchhHHH-HHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++..+|+|||+|.++.-..|-.. |...++. ..+..++|.||+|++..+.- ..++...+.+..|+.
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V----t~qeAe~YAesvGA~------- 151 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV----TRQEAEAYAESVGAL------- 151 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh----hHHHHHHHHHhhchh-------
Confidence 89999999999998876666544 3333433 34567899999998543221 122333334444542
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+..||+.+. |+.+||+.+...+
T Consensus 152 y~eTSAk~N~--------------Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 152 YMETSAKDNV--------------GISELFESLTAKM 174 (218)
T ss_pred heeccccccc--------------CHHHHHHHHHHHH
Confidence 7899999998 9999998887543
No 300
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.21 E-value=5.8e-10 Score=113.63 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=92.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH---H
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---E 135 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---e 135 (639)
...||+++|.+|+|||||+|+|++..... .....+.|.........+++.++++|||||..+... .
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~-----------v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAA-----------TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc-----------cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHH
Confidence 45799999999999999999999863211 111123344444555667889999999999887731 1
Q ss_pred -------HHHHHh--hccEEEEEEeCCC-CCchhHHHHHHHHHH-cC----CCcEEEEcCCCCCCCC--------HHHHH
Q 006610 136 -------VERVVG--MVEGAILVVDAGE-GPLAQTKFVLAKALK-YG----LRPILLLNKVDRPAVS--------EERCD 192 (639)
Q Consensus 136 -------v~~~l~--~aD~allVVDa~~-g~~~qt~~~l~~~~~-~~----lp~IvviNKiD~~~~~--------~~~~~ 192 (639)
+.+++. ..|.+++|..... ........+++.+.+ +| .+.|+|+||+|....+ .++..
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~ 178 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFV 178 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHH
Confidence 222332 4577777765432 334444556665554 44 3689999999984321 12222
Q ss_pred HHHHHHHHHHHhcCCCCccccccEEecccc
Q 006610 193 EVESLVFDLFANLGATDEQLDFPVLYASAK 222 (639)
Q Consensus 193 ~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~ 222 (639)
.....+.+-.......+..+..|++.++..
T Consensus 179 ~~~~~i~~~~~~~~~~~~~~~~pv~lven~ 208 (249)
T cd01853 179 AQRSHIVQQAIQQAAGDPRLENPVSLVENH 208 (249)
T ss_pred HHHHHHHHHHhhhhccCccccCCEEEEeCC
Confidence 333344333222222334556788877643
No 301
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.21 E-value=2.8e-10 Score=119.83 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=52.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEE------------------------eecC
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI------------------------SWRE 118 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~------------------------~~~~ 118 (639)
|+|+|.+++|||||+++|+..... .....+.|+....... .+..
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~------------~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVE------------IANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCc------------ccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence 589999999999999999875311 0111122222111111 1234
Q ss_pred ceEEEEeCCCC----CCchH---HHHHHHhhccEEEEEEeCCC
Q 006610 119 NELNMVDTPGH----ADFGG---EVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 119 ~~i~iIDTPGh----~dF~~---ev~~~l~~aD~allVVDa~~ 154 (639)
..++||||||. ..+.+ .....++.||++++|+|+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 67999999997 33433 45567999999999999863
No 302
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=7e-12 Score=111.00 Aligned_cols=154 Identities=21% Similarity=0.259 Sum_probs=106.0
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhcc
Q 006610 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVE 144 (639)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD 144 (639)
++|.++.|||.|+-++-..++.. .. .-..-||....+...+.-+..++++|||.|++.|..-+..+++.+|
T Consensus 2 llgds~~gktcllir~kdgafl~--~~-------fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~ 72 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA--GN-------FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDAD 72 (192)
T ss_pred ccccCccCceEEEEEeccCceec--Cc-------eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccc
Confidence 68999999999876543222110 00 0111266666666666666789999999999999999999999999
Q ss_pred EEEEEEeCCC-CCchhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecc
Q 006610 145 GAILVVDAGE-GPLAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (639)
Q Consensus 145 ~allVVDa~~-g~~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~S 220 (639)
+.+|++|... ......+.|+.++.++ .+...++.||+|+...+... .++-..+.+.++ +|+.+.|
T Consensus 73 allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~----~ddg~kla~~y~-------ipfmets 141 (192)
T KOG0083|consen 73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVK----RDDGEKLAEAYG-------IPFMETS 141 (192)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccc----cchHHHHHHHHC-------CCceecc
Confidence 9999999554 4455566677777665 45678999999984321100 011122333333 6899999
Q ss_pred cccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 221 AKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|++|. +++..|-+|.+.+
T Consensus 142 aktg~--------------nvd~af~~ia~~l 159 (192)
T KOG0083|consen 142 AKTGF--------------NVDLAFLAIAEEL 159 (192)
T ss_pred ccccc--------------cHhHHHHHHHHHH
Confidence 99999 8888777777654
No 303
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=118.86 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=107.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHAD------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~d------- 131 (639)
+-.|+++|-+++|||||++++... .......+-+|+......+.. .+..+.+-|.||...
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~A------------kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G 226 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAA------------KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG 226 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhc------------CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC
Confidence 457899999999999999999876 334444557777777777765 456699999999543
Q ss_pred chHHHHHHHhhccEEEEEEeCCCC----CchhHHHHHHHHHHc-----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g----~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~ 202 (639)
+.-...+.+..|-..+.|||...- +..+-..++..+.++ +.|.+||+||+|.+.. .+.+++..+.+.+
T Consensus 227 LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~-- 303 (369)
T COG0536 227 LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAE-- 303 (369)
T ss_pred ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHH--
Confidence 334445666668899999997632 233334455555444 6789999999997543 3333333332221
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+. ++.+++||.+++ |+++|+..+.+.+..
T Consensus 304 -~~~~------~~~~~ISa~t~~--------------g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 -ALGW------EVFYLISALTRE--------------GLDELLRALAELLEE 334 (369)
T ss_pred -hcCC------Ccceeeehhccc--------------CHHHHHHHHHHHHHH
Confidence 2222 123349999998 999998888776543
No 304
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.4e-11 Score=110.78 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=106.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee---------cCceEEEEeCCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---------RENELNMVDTPGHA 130 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~---------~~~~i~iIDTPGh~ 130 (639)
..++..+|.+|+||||++-+.....+....-.++ ||....+.....- ....++||||.|++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV----------GIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE 78 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV----------GIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE 78 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEe----------ecccccceEEEeccCCCCCCcceEEEEeeeccccHH
Confidence 4567789999999999988776554332111111 2222222211111 12468999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCC-CCCchhHHHHHHHHHHc---CCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 131 DFGGEVERVVGMVEGAILVVDAG-EGPLAQTKFVLAKALKY---GLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~-~g~~~qt~~~l~~~~~~---~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
.|...+-..++.|-|.||++|-+ +...-.++.|+.++..+ .-| ++++.||+|+++.+.. -.++...+..++
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V----s~~qa~~La~ky 154 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV----SEDQAAALADKY 154 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh----hHHHHHHHHHHh
Confidence 99999999999999999999965 44556677788777654 224 6789999999653321 123444555555
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
| +|+++.||-+|.+... .++-|++.+.+.+
T Consensus 155 g-------lPYfETSA~tg~Nv~k----------ave~LldlvM~Ri 184 (219)
T KOG0081|consen 155 G-------LPYFETSACTGTNVEK----------AVELLLDLVMKRI 184 (219)
T ss_pred C-------CCeeeeccccCcCHHH----------HHHHHHHHHHHHH
Confidence 5 5899999999983221 3455666555544
No 305
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=7.3e-10 Score=106.66 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=84.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.+.|.++|..|+|||+|.-+|...+... .-.++......+.+++....|||-|||..........
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~---------------TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~ 102 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRG---------------TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEY 102 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccC---------------eeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHH
Confidence 3579999999999999999998763211 1234555666677777789999999999988888777
Q ss_pred Hh---hccEEEEEEeCCCCC---chhHHHHHHHHH-----HcCCCcEEEEcCCCCCCCCHHH
Q 006610 140 VG---MVEGAILVVDAGEGP---LAQTKFVLAKAL-----KYGLRPILLLNKVDRPAVSEER 190 (639)
Q Consensus 140 l~---~aD~allVVDa~~g~---~~qt~~~l~~~~-----~~~lp~IvviNKiD~~~~~~~~ 190 (639)
+. .+-++|+|||+..-. ....+++...+. ..+.|++++.||-|+.-+.+..
T Consensus 103 ~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~ 164 (238)
T KOG0090|consen 103 LKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAE 164 (238)
T ss_pred ccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHH
Confidence 77 799999999976432 222333333332 3466788999999997776543
No 306
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=4.8e-10 Score=102.98 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=106.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCchHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
..++.+||..-+|||+|+..+.....+.....++ |+...+....+.- ...+++||||.|++.|..-+..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptv----------gvdffarlie~~pg~riklqlwdtagqerfrsitks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV----------GVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc----------chHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHH
Confidence 4578999999999999999988664433222221 2222221111111 1357899999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHc-CCC----cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY-GLR----PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~-~lp----~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
+++..-|+++|+|.++.-. .....|++.|... +-| +.+|..|+|+...+.-. .++...+.+..|.
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt----~EEaEklAa~hgM----- 148 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT----AEEAEKLAASHGM----- 148 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc----HHHHHHHHHhcCc-----
Confidence 9999999999999776543 4444555555432 323 45789999996544322 2333344444443
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++||++|- |+++.+++|.+.+
T Consensus 149 --~FVETSak~g~--------------NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 149 --AFVETSAKNGC--------------NVEEAFDMLAQEI 172 (213)
T ss_pred --eEEEecccCCC--------------cHHHHHHHHHHHH
Confidence 48999999998 9999999887654
No 307
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.5e-09 Score=97.35 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|..+|-.++||||++-.|.-..-.. .--|+..+...+.|++.++|+||..|+......+.+++
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~---------------~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy 82 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT---------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYY 82 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc---------------cccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhc
Confidence 468999999999999999986542111 01233445567789999999999999999999999999
Q ss_pred hhccEEEEEEeCCCC--CchhHHHHHHHH---HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEG--PLAQTKFVLAKA---LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g--~~~qt~~~l~~~---~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
....++|+|+|+.+. +...-.++.+.+ ....++++|..||-|++++.. ..++.+.+.--.+.+. .+-
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------pqei~d~leLe~~r~~--~W~ 154 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------PQEIQDKLELERIRDR--NWY 154 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC------HHHHHHHhccccccCC--ccE
Confidence 999999999997654 222222233332 234678889999999987653 2234444432222222 355
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+.++||.+|. |+.+=|.++.+.+.
T Consensus 155 vqp~~a~~gd--------------gL~eglswlsnn~~ 178 (180)
T KOG0071|consen 155 VQPSCALSGD--------------GLKEGLSWLSNNLK 178 (180)
T ss_pred eeccccccch--------------hHHHHHHHHHhhcc
Confidence 8899999998 88888888876553
No 308
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.10 E-value=1.8e-09 Score=117.08 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe------------------------e
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS------------------------W 116 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~------------------------~ 116 (639)
.+|+|+|.+++|||||+++|+..... .....+.|+........ +
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~------------~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~ 69 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE------------IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGT 69 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc------------ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCc
Confidence 47999999999999999999865221 11112233322221111 2
Q ss_pred cCceEEEEeCCCCCC-------chHHHHHHHhhccEEEEEEeCC
Q 006610 117 RENELNMVDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (639)
Q Consensus 117 ~~~~i~iIDTPGh~d-------F~~ev~~~l~~aD~allVVDa~ 153 (639)
....++|+||||..+ ......+.++.||++++|||+.
T Consensus 70 ~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 70 RFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred ceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 235689999999532 3346667799999999999986
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.10 E-value=3.1e-10 Score=113.65 Aligned_cols=166 Identities=26% Similarity=0.321 Sum_probs=98.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCC---------------cccccccccc---ccccceeEeeeeEEE------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------HERAMDSISL---ERERGITIASKVTGI------ 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------~~~v~D~~~~---e~ergiTi~~~~~~~------ 114 (639)
+...|+|.|++|+|||||+++|....-.... ..-.-|+... ....++-|.+..+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 3568999999999999999999864321000 0111222222 233455554433331
Q ss_pred ----------eecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHH--HHHHHHHcCCCcEEEEcCCC
Q 006610 115 ----------SWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF--VLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 115 ----------~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~--~l~~~~~~~lp~IvviNKiD 182 (639)
+.-++.+.||.|-|--.-.- ....+||.+++|+-...|-..|..+ +++.+ =|+|+||.|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------Di~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------DIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------cEEEEeCCC
Confidence 11378999999998543221 2578999999999977776555443 55544 499999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 183 ~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++ +....++...+....-....+..||+.+||.+|. |+++|.++|.+|.
T Consensus 179 ~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~--------------Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 179 RPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGE--------------GIDELWEAIDEHR 229 (266)
T ss_dssp HHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTB--------------SHHHHHHHHHHHH
T ss_pred hHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCC--------------CHHHHHHHHHHHH
Confidence 7543 3344455444443322234456799999999998 9999999998753
No 310
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.10 E-value=1.5e-10 Score=114.90 Aligned_cols=181 Identities=20% Similarity=0.242 Sum_probs=108.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc---------------------------cccccccccccccceeEeee
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH---------------------------ERAMDSISLERERGITIASK 110 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~---------------------------~~v~D~~~~e~ergiTi~~~ 110 (639)
++...|.++|..|+||||++.+|....+....+ ..+|....+....||.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 455689999999999999999998765532111 12344444555667665544
Q ss_pred eEEEeec-----------CceEEEEeCCCCCC-ch-----HHHHHHH-hh-ccEEEEEEeCCCCCchhH-----HHHHHH
Q 006610 111 VTGISWR-----------ENELNMVDTPGHAD-FG-----GEVERVV-GM-VEGAILVVDAGEGPLAQT-----KFVLAK 166 (639)
Q Consensus 111 ~~~~~~~-----------~~~i~iIDTPGh~d-F~-----~ev~~~l-~~-aD~allVVDa~~g~~~qt-----~~~l~~ 166 (639)
.....++ ..++.||||||+.+ |. .-...++ .. --.+++|||....-.+.| ......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 4333222 46799999999876 21 1111112 22 235788999765544444 344555
Q ss_pred HHHcCCCcEEEEcCCCCCCCCH--------HHHHHHHHHH-----HHHHHhcC--CCCccccccEEecccccCCCCCccc
Q 006610 167 ALKYGLRPILLLNKVDRPAVSE--------ERCDEVESLV-----FDLFANLG--ATDEQLDFPVLYASAKEGWASSTFT 231 (639)
Q Consensus 167 ~~~~~lp~IvviNKiD~~~~~~--------~~~~~v~~~i-----~~l~~~~g--~~~~~~~~Pvi~~SA~~g~~~~~~~ 231 (639)
+.+.++|+|++.||+|..+..+ +.+++.+++. .++...+. +......+-++.+|+.+|.
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~------ 250 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE------ 250 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC------
Confidence 6678999999999999977544 2233322221 01100000 0000012458999999999
Q ss_pred CCCcccccchHHHHHHHHhhC
Q 006610 232 KDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 232 ~~~~~~~~gl~~Lld~I~~~l 252 (639)
|++++|.++...+
T Consensus 251 --------G~ddf~~av~~~v 263 (366)
T KOG1532|consen 251 --------GFDDFFTAVDESV 263 (366)
T ss_pred --------cHHHHHHHHHHHH
Confidence 9999999887544
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.09 E-value=1.7e-09 Score=113.61 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=95.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc---------c-----ccc-cccccc---cccceeEeeeeEE------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH---------E-----RAM-DSISLE---RERGITIASKVTG------ 113 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~---------~-----~v~-D~~~~e---~ergiTi~~~~~~------ 113 (639)
.+...|+|+|.+|+|||||+..|.......... . .+. |..... ...+.-+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 346789999999999999999988653211000 0 000 110000 0112111111110
Q ss_pred ----------EeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 114 ----------ISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 114 ----------~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
+...++.+.||||||...- ....+..+|.++++.+...+-. ...... .-.++|.++|+||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e---l~~~~~-~l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD---LQGIKA-GLMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH---HHHHHH-HHhhhccEEEEEcccc
Confidence 1224789999999996532 2236788899998866543321 111111 1247888999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 184 PAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 184 ~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
...... ..+...+..-+..+......+..|++++||++|. |+++|+++|.+++
T Consensus 185 ~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~--------------Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 185 EGATNV--TIARLMLALALEEIRRREDGWRPPVLTTSAVEGR--------------GIDELWDAIEEHK 237 (300)
T ss_pred cchhHH--HHHHHHHHHHHhhccccccCCCCCEEEEEccCCC--------------CHHHHHHHHHHHH
Confidence 754321 1111111111111111111223579999999998 9999999998764
No 312
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.08 E-value=3.2e-09 Score=106.58 Aligned_cols=160 Identities=18% Similarity=0.280 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccc-cccceeEeeeeEEEeec-CceEEEEeCCCCCCchHH----
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLE-RERGITIASKVTGISWR-ENELNMVDTPGHADFGGE---- 135 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e-~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~dF~~e---- 135 (639)
+|.++|..++||||....+.... .+.+ ..-|.|+......+... ...++|||+||+.+|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~------------~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~ 68 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY------------SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNS 68 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---------------GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTC
T ss_pred CEEEEcCCCCChhhHHHHHHcCC------------CchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccc
Confidence 58999999999999999888652 1211 22366777666677544 569999999999987654
Q ss_pred -HHHHHhhccEEEEEEeCCCCCchhHH----HHHHHHHHc--CCCcEEEEcCCCCCCCCH--HHHHHHHHHHHHHHHhcC
Q 006610 136 -VERVVGMVEGAILVVDAGEGPLAQTK----FVLAKALKY--GLRPILLLNKVDRPAVSE--ERCDEVESLVFDLFANLG 206 (639)
Q Consensus 136 -v~~~l~~aD~allVVDa~~g~~~qt~----~~l~~~~~~--~lp~IvviNKiD~~~~~~--~~~~~v~~~i~~l~~~~g 206 (639)
.+..++.++++|+|+|+......... ..+..+.+. ++.+.|++.|+|....+. +.+.+..+.+.+.+...+
T Consensus 69 ~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 69 QREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp CHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 47789999999999999833232222 344444443 567889999999854221 223334445555555544
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.. .+-++.+|-... .+-+.+-.|+..+
T Consensus 149 ~~----~~~~~~TSI~D~---------------Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 149 IE----DITFFLTSIWDE---------------SLYEAWSKIVQKL 175 (232)
T ss_dssp -T----SEEEEEE-TTST---------------HHHHHHHHHHHTT
T ss_pred cc----ceEEEeccCcCc---------------HHHHHHHHHHHHH
Confidence 33 244666665543 5777777777665
No 313
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.07 E-value=1e-09 Score=111.23 Aligned_cols=167 Identities=22% Similarity=0.236 Sum_probs=104.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCC---------------cccccccccc---ccccceeEeeeeEE-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------HERAMDSISL---ERERGITIASKVTG------- 113 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------~~~v~D~~~~---e~ergiTi~~~~~~------- 113 (639)
+...|+|.|.+|+|||||+++|......... ..-.-|+... ....|+-+.+....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 4567999999999999999999865321000 0111121111 11223333222211
Q ss_pred ---------EeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHH--HHHHHHHcCCCcEEEEcCCC
Q 006610 114 ---------ISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF--VLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 114 ---------~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~--~l~~~~~~~lp~IvviNKiD 182 (639)
++--++.+.||.|-|--.-.- ....+||.+++|.=+.-|-..|..+ +++.+. |+||||.|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------i~vINKaD 200 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------IIVINKAD 200 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------eeeEeccC
Confidence 111278999999998543222 2568899999998877776666654 444444 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhc--CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 183 RPAVSEERCDEVESLVFDLFANL--GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 183 ~~~~~~~~~~~v~~~i~~l~~~~--g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+.++.. ...++...+... ......+.-|++.+||.+|. |+++|+++|.++..
T Consensus 201 ~~~A~~-----a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~--------------Gi~~L~~ai~~h~~ 254 (323)
T COG1703 201 RKGAEK-----AARELRSALDLLREVWRENGWRPPVVTTSALEGE--------------GIDELWDAIEDHRK 254 (323)
T ss_pred hhhHHH-----HHHHHHHHHHhhcccccccCCCCceeEeeeccCC--------------CHHHHHHHHHHHHH
Confidence 865432 223333333222 13344556789999999998 99999999988753
No 314
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.06 E-value=2.4e-10 Score=94.06 Aligned_cols=73 Identities=34% Similarity=0.523 Sum_probs=63.6
Q ss_pred ceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCC-CCcCCeee
Q 006610 277 GRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK-PSIGHTVA 351 (639)
Q Consensus 277 G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~-~~~Gdtl~ 351 (639)
|+++++||++|+|++||+|++.+ ..++ ++....+|.+|+.+++...+++..+.||+++++.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~-~~~~-~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLP-NGTG-KKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEES-TTTT-EECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECc-cCCc-ceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999976 3222 11245899999999999999999999999999999999 89999997
No 315
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.06 E-value=1.5e-09 Score=107.81 Aligned_cols=164 Identities=15% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-----cc--cccccccccccccee---EeeeeEE-------------E
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-----HE--RAMDSISLERERGIT---IASKVTG-------------I 114 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-----~~--~v~D~~~~e~ergiT---i~~~~~~-------------~ 114 (639)
..+++|+++|+.|+|||||+++|+...+.... .+ .-.|....+ ..|.. +...... .
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 35899999999999999999999987442110 00 011222221 11211 1111000 0
Q ss_pred eecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHH
Q 006610 115 SWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEV 194 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v 194 (639)
...+..+.||+|.|..-.... .....+..+.|+|+.++...+ .......+.|.++++||+|+.+.......++
T Consensus 99 ~~~~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred ccCCCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccccchhhHHHH
Confidence 112458899999993111111 112345567899987664322 2233345678899999999965322222333
Q ss_pred HHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 195 ~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+.+ ..+. ...|++++||++|. |++++++++.++.
T Consensus 172 ~~~l----~~~~-----~~~~i~~~Sa~~g~--------------gv~~l~~~i~~~~ 206 (207)
T TIGR00073 172 KADA----KKIN-----PEAEIILMSLKTGE--------------GLDEWLEFLEGQV 206 (207)
T ss_pred HHHH----HHhC-----CCCCEEEEECCCCC--------------CHHHHHHHHHHhh
Confidence 3333 2222 12579999999999 9999999998753
No 316
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=2.1e-10 Score=106.68 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=107.2
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
.-+...+++|+|..++||||++.++++.-+......++ |+........+...+..+.+|||.|+.+|..-
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI----------gvdflerqi~v~~Edvr~mlWdtagqeEfDaI 85 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----------GVDFLERQIKVLIEDVRSMLWDTAGQEEFDAI 85 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhcccccccccccc----------chhhhhHHHHhhHHHHHHHHHHhccchhHHHH
Confidence 34567899999999999999999999654332222211 22222222223345678889999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
+..+++.|.+.+||++.++... ..+..|.+.... ..+|.++|-||+|+.....-.-. ++..+.+.+.
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~----evE~lak~l~------ 155 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKG----EVEGLAKKLH------ 155 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchH----HHHHHHHHhh------
Confidence 9999999999999999877543 445555555533 48999999999999653221111 2222222222
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
.-.+-+|++... ++...|..+.+
T Consensus 156 -~RlyRtSvked~--------------NV~~vF~YLae 178 (246)
T KOG4252|consen 156 -KRLYRTSVKEDF--------------NVMHVFAYLAE 178 (246)
T ss_pred -hhhhhhhhhhhh--------------hhHHHHHHHHH
Confidence 226778888887 77666666654
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.00 E-value=4.3e-09 Score=111.45 Aligned_cols=168 Identities=19% Similarity=0.284 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCC-----CCccccccccccccccc---eeEeeee---EEEeec-----CceEEEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGAD-----IPHERAMDSISLERERG---ITIASKV---TGISWR-----ENELNMV 124 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~-----~~~~~v~D~~~~e~erg---iTi~~~~---~~~~~~-----~~~i~iI 124 (639)
..|+++|++++|||||++++..+.-.. ....+..|-.+.. ..| +|...++ ..++.. ..++.||
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcC-CCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 479999999999999999999883211 1123333433332 236 5555555 333332 2589999
Q ss_pred eCCCCCCch-------HH----------------------HHHHHh-hccEEEEEE-eCC------CCCchhHHHHHHHH
Q 006610 125 DTPGHADFG-------GE----------------------VERVVG-MVEGAILVV-DAG------EGPLAQTKFVLAKA 167 (639)
Q Consensus 125 DTPGh~dF~-------~e----------------------v~~~l~-~aD~allVV-Da~------~g~~~qt~~~l~~~ 167 (639)
||+|+.+=+ .. +...+. .+|.+|+|. |++ ++......+++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999976511 11 456777 899999999 875 55667778899999
Q ss_pred HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHH
Q 006610 168 LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDA 247 (639)
Q Consensus 168 ~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~ 247 (639)
++.++|+|+++||.|-.. ++ ..+..+++.+ .+ ++|++++|+.+-. ...+..+|+.
T Consensus 177 k~~~kPfiivlN~~dp~~--~e-t~~l~~~l~e---ky-------~vpvl~v~c~~l~------------~~DI~~il~~ 231 (492)
T TIGR02836 177 KELNKPFIILLNSTHPYH--PE-TEALRQELEE---KY-------DVPVLAMDVESMR------------ESDILSVLEE 231 (492)
T ss_pred HhcCCCEEEEEECcCCCC--ch-hHHHHHHHHH---Hh-------CCceEEEEHHHcC------------HHHHHHHHHH
Confidence 999999999999999421 11 1222222211 11 3567777765432 1156666666
Q ss_pred HHhhCCC
Q 006610 248 IIRHVPP 254 (639)
Q Consensus 248 I~~~lP~ 254 (639)
++-.+|-
T Consensus 232 vL~EFPv 238 (492)
T TIGR02836 232 VLYEFPI 238 (492)
T ss_pred HHhcCCc
Confidence 6666553
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.99 E-value=1.5e-09 Score=95.80 Aligned_cols=138 Identities=22% Similarity=0.271 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC----CCCchHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG----HADFGGEV 136 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG----h~dF~~ev 136 (639)
.+++++|.+|+|||||+++|-+.. +...+...++|++. -.||||| |..+-...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~---------------------~lykKTQAve~~d~--~~IDTPGEy~~~~~~Y~aL 58 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND---------------------TLYKKTQAVEFNDK--GDIDTPGEYFEHPRWYHAL 58 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch---------------------hhhcccceeeccCc--cccCCchhhhhhhHHHHHH
Confidence 469999999999999999997651 12334455666543 3689999 33332333
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
...+..+|.+++|-.+.++-+.-. -..+.-...|+|=+++|.|+.. ... ++....++.+.|+. |+
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLae--d~d----I~~~~~~L~eaGa~------~I 123 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAE--DAD----ISLVKRWLREAGAE------PI 123 (148)
T ss_pred HHHhhccceeeeeecccCccccCC---cccccccccceEEEEecccccc--hHh----HHHHHHHHHHcCCc------ce
Confidence 444567888999988887633221 1222334557888999999963 222 22334455566643 59
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+.+|+.+.. |+++|++.+..
T Consensus 124 F~~s~~d~~--------------gv~~l~~~L~~ 143 (148)
T COG4917 124 FETSAVDNQ--------------GVEELVDYLAS 143 (148)
T ss_pred EEEeccCcc--------------cHHHHHHHHHh
Confidence 999999987 99999998864
No 319
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.97 E-value=1.4e-09 Score=105.23 Aligned_cols=163 Identities=17% Similarity=0.119 Sum_probs=113.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEE-eecCceEEEEeCCCCCCchHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI-SWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~-~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
.++++|+|...+|||+|+-.+....+-..+..++.|.. +....+ .-+.+.+.||||.|++||.....-
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-----------s~~v~V~dg~~v~L~LwDTAGqedYDrlRpl 72 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-----------SANVTVDDGKPVELGLWDTAGQEDYDRLRPL 72 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-----------eEEEEecCCCEEEEeeeecCCCccccccccc
Confidence 46899999999999999988877655455555565542 222333 244567899999999999775556
Q ss_pred HHhhccEEEEEEeCCCCCc--hhHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHH---------HHHHHHHHhc
Q 006610 139 VVGMVEGAILVVDAGEGPL--AQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVE---------SLVFDLFANL 205 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~--~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~---------~~i~~l~~~~ 205 (639)
.+..+|.+|++++...... .-...|+-..+.+ ++|+|+|.+|.|+. .++...++.. ++-..+..++
T Consensus 73 sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr-~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 73 SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR-DDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh-hCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 7788999999888655433 2344566666555 69999999999986 2332222221 2334455566
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
|+ ..++++||++.. |+.+.|+..+.+.-.
T Consensus 152 ga------~~y~EcSa~tq~--------------~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 152 GA------VKYLECSALTQK--------------GVKEVFDEAIRAALR 180 (198)
T ss_pred Cc------ceeeeehhhhhC--------------CcHHHHHHHHHHHhc
Confidence 65 348999999998 899999887776533
No 320
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.95 E-value=4.9e-09 Score=90.04 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=73.0
Q ss_pred CCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe-
Q 006610 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV- 338 (639)
Q Consensus 260 ~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i- 338 (639)
++||++.|.+++.....|+++.|||.+|+++.||+|++.+.+ ...+|++|..+. .++++|.|||.|+|
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~-------~~~~V~sI~~~~----~~~~~a~aG~~v~i~ 70 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG-------VTGEVKSVEMHH----EPLEEALPGDNVGFN 70 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC-------cEEEEEEEEECC----cCcCEECCCCEEEEE
Confidence 579999999999988899999999999999999999999753 567899998763 57899999999877
Q ss_pred -cCCC--CCCcCCeeeecCC
Q 006610 339 -AGMT--KPSIGHTVANTEV 355 (639)
Q Consensus 339 -~gl~--~~~~Gdtl~~~~~ 355 (639)
.+++ +++.||.||++++
T Consensus 71 l~~i~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 71 VKNVSKKDIKRGDVAGDSKN 90 (91)
T ss_pred ECCCCHHHcCCcCEEccCCC
Confidence 5653 5889999998754
No 321
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.7e-09 Score=97.43 Aligned_cols=158 Identities=17% Similarity=0.159 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+--+|.++|--|+||||+.-+|--..+. ...-|+......+.|++.++++||.-|+.....-++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv---------------ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRc 81 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV---------------TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRC 81 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc---------------ccCCCCCcCccccccccccceeeEccCcccccHHHHH
Confidence 3456899999999999976655322111 1123455666778889999999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchh--HHHHHHHH---HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ--TKFVLAKA---LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q--t~~~l~~~---~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
++...|.+|+|||+.+-..-. -.++...+ +-.+...+||.||+|...+-- ..++...+.--...+ .-
T Consensus 82 Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t------~~E~~~~L~l~~Lk~--r~ 153 (182)
T KOG0072|consen 82 YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT------RSEVLKMLGLQKLKD--RI 153 (182)
T ss_pred HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh------HHHHHHHhChHHHhh--he
Confidence 999999999999987653322 22233333 223556789999999865321 222211111000011 12
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+.++..||.+|. |+++.+|++.+-+.
T Consensus 154 ~~Iv~tSA~kg~--------------Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 154 WQIVKTSAVKGE--------------GLDPAMDWLQRPLK 179 (182)
T ss_pred eEEEeecccccc--------------CCcHHHHHHHHHHh
Confidence 669999999999 99999999987654
No 322
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3.5e-10 Score=118.40 Aligned_cols=138 Identities=33% Similarity=0.457 Sum_probs=108.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCC-------------------CCccccccccccccccceeEeeeeEEEeecCce
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGAD-------------------IPHERAMDSISLERERGITIASKVTGISWRENE 120 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------------------~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~ 120 (639)
.+||.++||+++||||+.. +.+|.. ....+++|....|++|+++|+.....+....+.
T Consensus 7 ~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~ 83 (391)
T KOG0052|consen 7 HINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYY 83 (391)
T ss_pred ccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEE
Confidence 5899999999999999876 322311 112488999999999999988888888778899
Q ss_pred EEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCC-cEEEEcCCCCCC--CCHHH
Q 006610 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPA--VSEER 190 (639)
Q Consensus 121 i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~--~~~~~ 190 (639)
++++|.|||.||...+....+++|.++++|.+.-| ...||+++...+..+++. +|+.+||||... ....+
T Consensus 84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~r 163 (391)
T KOG0052|consen 84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEAR 163 (391)
T ss_pred EEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccccc
Confidence 99999999999999988889999999999988433 247999999999999875 678899999744 23344
Q ss_pred HHHHHHHHHH
Q 006610 191 CDEVESLVFD 200 (639)
Q Consensus 191 ~~~v~~~i~~ 200 (639)
+.++.++...
T Consensus 164 ~~ei~k~~~~ 173 (391)
T KOG0052|consen 164 YEEIKKEVSS 173 (391)
T ss_pred hhhhheeeee
Confidence 4555444433
No 323
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.92 E-value=3e-09 Score=107.80 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=57.6
Q ss_pred eEEEEeCCCCCCchHHHHHHH--------hhccEEEEEEeCCCCCchhHH-----HHHHHHHHcCCCcEEEEcCCCCCCC
Q 006610 120 ELNMVDTPGHADFGGEVERVV--------GMVEGAILVVDAGEGPLAQTK-----FVLAKALKYGLRPILLLNKVDRPAV 186 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l--------~~aD~allVVDa~~g~~~qt~-----~~l~~~~~~~lp~IvviNKiD~~~~ 186 (639)
.+.|+|||||.+|.......- ...=++|+++|+..-..+... ..+....+.++|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999988654333322 223468999998643332222 1223344579999999999999652
Q ss_pred CHHHHH------------------HHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 187 SEERCD------------------EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 187 ~~~~~~------------------~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
...... ...+++.+++...+. ..++++.|+.++. |+..|+..|
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~-----~~~f~pls~~~~~--------------~~~~L~~~i 232 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL-----VIRFIPLSSKDGE--------------GMEELLAAI 232 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS-----S---EE-BTTTTT--------------THHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CceEEEEECCChH--------------HHHHHHHHH
Confidence 211100 011122222222221 1269999999998 999998887
Q ss_pred Hh
Q 006610 249 IR 250 (639)
Q Consensus 249 ~~ 250 (639)
-+
T Consensus 233 d~ 234 (238)
T PF03029_consen 233 DK 234 (238)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 324
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.92 E-value=7.4e-09 Score=87.36 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=68.4
Q ss_pred CceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--c
Q 006610 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (639)
Q Consensus 262 p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~ 339 (639)
||++.|.+++..+ .|.++.|||.+|++++||.|.+.+.+ ...+|++|..++ .++++|.|||.+++ .
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~-------~~~~V~si~~~~----~~~~~a~aGd~v~~~l~ 68 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK-------ESVEVKSIYVDD----EEVDYAVAGENVRLKLK 68 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC-------cEEEEEEEEECC----eECCEECCCCEEEEEEC
Confidence 7999999999988 89999999999999999999999763 457899998653 68999999999985 5
Q ss_pred CCC--CCCcCCeeee
Q 006610 340 GMT--KPSIGHTVAN 352 (639)
Q Consensus 340 gl~--~~~~Gdtl~~ 352 (639)
+++ +++.||+||+
T Consensus 69 ~~~~~~v~~G~vl~~ 83 (83)
T cd03698 69 GIDEEDISPGDVLCS 83 (83)
T ss_pred CCCHHHCCCCCEEeC
Confidence 665 6889999974
No 325
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.91 E-value=7.4e-09 Score=93.07 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCCchHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~dF~~ev~~ 138 (639)
-.+|.++|--++||||++.+|-.. |....-+..|.++ ..+.+.+ +++|+||..|+....+-+..
T Consensus 17 EirilllGldnAGKTT~LKqL~sE-----------D~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~IRpyWsN 81 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSE-----------DPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGIRPYWSN 81 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccC-----------ChhhccccCCcce----EEEeecCcEEEEEEecCCccccchhhhh
Confidence 457999999999999999999765 3333334445443 4466665 89999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhH-H---HHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQT-K---FVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt-~---~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
++..+|++|+|||+++.-. ..+ . ++++..+-..+|+.++.||-|+.-+.. .+++...+ ++ -+..+ ..
T Consensus 82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~kl-nl---~~lrd--Rs 153 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKL-NL---AGLRD--RS 153 (185)
T ss_pred hhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhc-ch---hhhhh--ce
Confidence 9999999999999776422 111 2 233333344779999999999865433 12222111 00 01111 13
Q ss_pred ccEEecccccCC
Q 006610 214 FPVLYASAKEGW 225 (639)
Q Consensus 214 ~Pvi~~SA~~g~ 225 (639)
+.+-.+||.++.
T Consensus 154 whIq~csals~e 165 (185)
T KOG0074|consen 154 WHIQECSALSLE 165 (185)
T ss_pred EEeeeCcccccc
Confidence 558889999988
No 326
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.90 E-value=1.3e-08 Score=108.21 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=93.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccccccccccee-EeeeeEEEeecC-ceEEEEeCCCCCCchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGIT-IASKVTGISWRE-NELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiT-i~~~~~~~~~~~-~~i~iIDTPGh~dF~~ev~ 137 (639)
..||||+|.+|+|||||+|+|.+-...+.. .-..|.+ .....+.+.+.. -.+.+||.||...-.-...
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~----------aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~ 104 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEG----------AAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE 104 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTT----------S--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcC----------cCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH
Confidence 469999999999999999999754221111 0111221 111222222322 3699999999643222233
Q ss_pred HH-----HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC--------C--CCHH-HHHHHHHHHHHH
Q 006610 138 RV-----VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP--------A--VSEE-RCDEVESLVFDL 201 (639)
Q Consensus 138 ~~-----l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~--------~--~~~~-~~~~v~~~i~~l 201 (639)
.+ +...|.+|++.+. ........+++.+.++|.|+.+|-+|+|.. . .+.+ .++++.+.+.+-
T Consensus 105 ~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 105 EYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp HHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred HHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 33 4556877776653 355667788899999999999999999951 0 1111 123344445555
Q ss_pred HHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC
Q 006610 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~ 257 (639)
+.+.|..+ -+|+.+|..+-. ..+...|.+++.+.+|..++
T Consensus 183 L~k~gv~~----P~VFLVS~~dl~------------~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 183 LQKAGVSE----PQVFLVSSFDLS------------KYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHCTT-SS------EEEB-TTTTT------------STTHHHHHHHHHHHS-GGGH
T ss_pred HHHcCCCc----CceEEEeCCCcc------------cCChHHHHHHHHHHhHHHHH
Confidence 55555443 358888886532 12688899999999998654
No 327
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.89 E-value=1.2e-08 Score=103.01 Aligned_cols=127 Identities=15% Similarity=0.147 Sum_probs=82.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC------CCCC-----------cc----------cccccccccc------c---
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG------ADIP-----------HE----------RAMDSISLER------E--- 102 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g------~~~~-----------~~----------~v~D~~~~e~------e--- 102 (639)
..+.|+++|+.++|||||+++|++... .... .. .+.|...... +
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 357899999999999999999997631 0000 00 0111111110 0
Q ss_pred -cceeEeeeeEEEee--c-CceEEEEeCCCCCCc-------------hHHHHHHHh-hccEEEEEEeCCCCCchhH-HHH
Q 006610 103 -RGITIASKVTGISW--R-ENELNMVDTPGHADF-------------GGEVERVVG-MVEGAILVVDAGEGPLAQT-KFV 163 (639)
Q Consensus 103 -rgiTi~~~~~~~~~--~-~~~i~iIDTPGh~dF-------------~~ev~~~l~-~aD~allVVDa~~g~~~qt-~~~ 163 (639)
.+-.+......++. . -..++||||||..+. ...+..+++ ..+.+|+|+||..++..+. .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 01112222222222 1 258999999998532 124556777 4468999999999888877 578
Q ss_pred HHHHHHcCCCcEEEEcCCCCCC
Q 006610 164 LAKALKYGLRPILLLNKVDRPA 185 (639)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~ 185 (639)
.+.+...+.|.|+|+||+|...
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCC
Confidence 8888889999999999999865
No 328
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.87 E-value=1e-07 Score=99.00 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchH----
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG---- 134 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~---- 134 (639)
.||.++|..|.|||||++.|+........ ...+.......+..++......+.-++ .+++||||||+.|...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED--SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS-----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc--ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 69999999999999999999986432111 000111112233444554444444333 4789999999876321
Q ss_pred ----------HHHHHH-------------hhccEEEEEEeCC-CCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHH
Q 006610 135 ----------EVERVV-------------GMVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER 190 (639)
Q Consensus 135 ----------ev~~~l-------------~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~ 190 (639)
....++ ..+|++|++++++ .|+.+...+.++.+.+ .+++|.||.|.|. ..+++
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~--lt~~e 159 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADT--LTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGG--S-HHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccc--cCHHH
Confidence 111122 2257899999975 6788888888887765 4889999999998 45667
Q ss_pred HHHHHHHHHHHHHhcCC
Q 006610 191 CDEVESLVFDLFANLGA 207 (639)
Q Consensus 191 ~~~v~~~i~~l~~~~g~ 207 (639)
+...++.+.+-+...+.
T Consensus 160 l~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 160 LQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 77777777777766544
No 329
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.86 E-value=3.9e-08 Score=102.06 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=71.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH---H
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---E 135 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---e 135 (639)
...+|+++|.+|+|||||+|+|++..-.. +.++ .+.+.........+++.++++|||||..+... +
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~-----vs~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~ 105 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIAT-----VSAF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQ 105 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc-----ccCC------CCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHH
Confidence 45789999999999999999999763211 0011 11122222233446789999999999887532 2
Q ss_pred HHHHHh------hccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CCcEEEEcCCCCC
Q 006610 136 VERVVG------MVEGAILVVDAGE-GPLAQTKFVLAKALKY-G----LRPILLLNKVDRP 184 (639)
Q Consensus 136 v~~~l~------~aD~allVVDa~~-g~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~ 184 (639)
....++ ..|++|+|..... ......+.+++.+.+. | .+.||++++.|..
T Consensus 106 ~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 106 AVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 222232 4788999954322 2444445555544432 2 4679999999964
No 330
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.80 E-value=1.7e-08 Score=96.21 Aligned_cols=64 Identities=28% Similarity=0.267 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCCc----hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHH-HHHHcCCCcEEEEcCC
Q 006610 118 ENELNMVDTPGHADF----GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLA-KALKYGLRPILLLNKV 181 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF----~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~-~~~~~~lp~IvviNKi 181 (639)
...+.||||||..+. ...+..++..+|.+|+|+++......+....+. .....+-..|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999997542 256788889999999999999876655444444 4444555678888985
No 331
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.80 E-value=1.2e-08 Score=102.03 Aligned_cols=155 Identities=19% Similarity=0.145 Sum_probs=100.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccccccc-ccceeEeeeeEEEeecCceEEEEeCCCC-------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLER-ERGITIASKVTGISWRENELNMVDTPGH------- 129 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~-ergiTi~~~~~~~~~~~~~i~iIDTPGh------- 129 (639)
.+...+++.|..++|||+|++.++..... .| .++ ..|-|....... -+..+.++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~-------~~---t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~ 200 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI-------AD---TSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGF 200 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh-------hh---hcCCCCccceeeeeee---ccceEEEEecCCcccccCCc
Confidence 45578999999999999999999876321 11 112 345444433333 3578999999992
Q ss_pred ---CCchHHHHHHHhhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 130 ---ADFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 130 ---~dF~~ev~~~l~~a---D~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
.|+...+..++-.= =-+.+++|+.-++++.+...+..+.+.++|+.+|.||||+...-...-......+...|.
T Consensus 201 ~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~ 280 (320)
T KOG2486|consen 201 ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ 280 (320)
T ss_pred cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehh
Confidence 35555555555433 347888999999999999999999999999999999999742110000000001111111
Q ss_pred hcCCCCccccccEEecccccCC
Q 006610 204 NLGATDEQLDFPVLYASAKEGW 225 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~ 225 (639)
.+.-......+|++++|+.++.
T Consensus 281 ~l~~~~f~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 281 GLIRGVFLVDLPWIYVSSVTSL 302 (320)
T ss_pred hccccceeccCCceeeeccccc
Confidence 1221222335789999999998
No 332
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.77 E-value=4.9e-08 Score=96.32 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=65.4
Q ss_pred CceEEEEeCCCC--CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHH
Q 006610 118 ENELNMVDTPGH--ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (639)
Q Consensus 118 ~~~i~iIDTPGh--~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~ 195 (639)
+....+|+|.|- .... . -..+|.+|+|+|+.++...+.. ...+....-++++||+|+........+.+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~---~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF---S--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCCEEEEECCCCCccccc---c--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccccccHHHHH
Confidence 357889999993 2211 1 1236899999999887553211 112222334899999999642222223333
Q ss_pred HHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 196 ~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+.+..+ .. ..|++++||++|+ |+++++++|.+++
T Consensus 162 ~~~~~~----~~-----~~~i~~~Sa~~g~--------------gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKM----RG-----EKPFIFTNLKTKE--------------GLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHh----CC-----CCCEEEEECCCCC--------------CHHHHHHHHHhhc
Confidence 333332 11 2579999999999 9999999998765
No 333
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.75 E-value=6.3e-08 Score=79.88 Aligned_cols=80 Identities=38% Similarity=0.377 Sum_probs=67.2
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
++++|++++++++.|+++++||++|+|++||.+.+.+.. .....+|.+|+.+. .+++++.|||++++.+.+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~-----~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~ 71 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGG-----GGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKD 71 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCC-----ceeEEEEeEeEecC----ceeceecCCCEEEEEEcc
Confidence 468899999999999999999999999999999998631 12567888988775 578999999999997655
Q ss_pred C--CCcCCeee
Q 006610 343 K--PSIGHTVA 351 (639)
Q Consensus 343 ~--~~~Gdtl~ 351 (639)
. +.+||+++
T Consensus 72 ~~~~~~g~~l~ 82 (83)
T cd01342 72 KDDIKIGDTLT 82 (83)
T ss_pred ccccCCCCEec
Confidence 4 88999886
No 334
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.72 E-value=2.9e-07 Score=91.87 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-------h
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF-------G 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF-------~ 133 (639)
++|+++|..|+||||++|.|++...... .......|.........+.+..+++|||||..|- .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~----------~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~ 70 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS----------GSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEII 70 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee----------ccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHH
Confidence 4799999999999999999997632111 0012234545555666889999999999996542 1
Q ss_pred HHHHHHH----hhccEEEEEEeCCCCCchhHHHHHHHHHH-cCC----CcEEEEcCCCCCC
Q 006610 134 GEVERVV----GMVEGAILVVDAGEGPLAQTKFVLAKALK-YGL----RPILLLNKVDRPA 185 (639)
Q Consensus 134 ~ev~~~l----~~aD~allVVDa~~g~~~qt~~~l~~~~~-~~l----p~IvviNKiD~~~ 185 (639)
.+..+++ ...+++|||+... ......+..++.+.+ +|- -.||+++..|...
T Consensus 71 ~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 71 REIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 2333333 2368899999988 667677777766654 343 2577888888644
No 335
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.69 E-value=1.3e-07 Score=79.66 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=64.7
Q ss_pred CceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--c
Q 006610 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (639)
Q Consensus 262 p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~ 339 (639)
||++.|.+++... |.+..|||.+|++++||+|.+.+.+ ...+|++|.... .++++|.|||.+++ .
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~-------~~~~V~si~~~~----~~~~~a~aGd~v~l~l~ 67 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK-------TQVEVLSIYNED----VEVRYARPGENVRLRLK 67 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC-------cEEEEEEEEECC----EECCEECCCCEEEEEec
Confidence 7899999988753 8999999999999999999999763 457889987653 68999999999987 4
Q ss_pred CCC--CCCcCCeeee
Q 006610 340 GMT--KPSIGHTVAN 352 (639)
Q Consensus 340 gl~--~~~~Gdtl~~ 352 (639)
+++ +++.||.||+
T Consensus 68 ~i~~~~v~~G~vl~~ 82 (82)
T cd04089 68 GIEEEDISPGFVLCS 82 (82)
T ss_pred CCCHHHCCCCCEEeC
Confidence 443 5788998874
No 336
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.69 E-value=9.3e-08 Score=87.40 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=121.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|....|||||+-...+... | ..-+...|+...-+..++......+.|||..|+.+|..+..-+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~---------d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEY---------D-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchh---------H-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 46899999999999999988876521 1 1122345777766777776667788999999999998888878
Q ss_pred HhhccEEEEEEeCCCCCc-hhHHHHHHHHHHcCCC--cEEEEcCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGLR--PILLLNKVDRP-AVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~~lp--~IvviNKiD~~-~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
...+-++|+++|-+.... ..-++|.++|+..+.. +|+|.+|-|.- ...++..+++..+.+...+.+++ +
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-------s 162 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-------S 162 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-------c
Confidence 888888999999766544 3445788888887664 47899999963 33445445566666666555544 5
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+++|+-+.. +++.+|..+...+
T Consensus 163 L~F~Sts~sI--------------Nv~KIFK~vlAkl 185 (205)
T KOG1673|consen 163 LFFCSTSHSI--------------NVQKIFKIVLAKL 185 (205)
T ss_pred EEEeeccccc--------------cHHHHHHHHHHHH
Confidence 8999999998 9999999887654
No 337
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.7e-06 Score=93.51 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=98.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..-+|++|++|+|||||+..|....- .+.-.+...-||+. ..+..+|+|+.|| .|+ ..+...
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~t---------k~ti~~i~GPiTvv------sgK~RRiTflEcp--~Dl-~~miDv 130 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFT---------KQTIDEIRGPITVV------SGKTRRITFLECP--SDL-HQMIDV 130 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHH---------HhhhhccCCceEEe------ecceeEEEEEeCh--HHH-HHHHhH
Confidence 45688999999999999999987621 11111222234433 3456789999999 443 445566
Q ss_pred HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEE-EEcCCCCCCCCHHHHHHHHHHHHHHHH-hcCCCCccccccEE
Q 006610 140 VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPIL-LLNKVDRPAVSEERCDEVESLVFDLFA-NLGATDEQLDFPVL 217 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~Iv-viNKiD~~~~~~~~~~~v~~~i~~l~~-~~g~~~~~~~~Pvi 217 (639)
...||.+||+||+.-|..-.|.+++..+..+|+|.++ |++..|+-. ++..+..+.+.+...|. ++-. ....+
T Consensus 131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk-~~stLr~~KKrlkhRfWtEiyq-----GaKlF 204 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK-NPSTLRSIKKRLKHRFWTEIYQ-----GAKLF 204 (1077)
T ss_pred HHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc-ChHHHHHHHHHHhhhHHHHHcC-----CceEE
Confidence 7899999999999999999999999999999999765 889999853 34445555555544332 2111 12377
Q ss_pred ecccccC
Q 006610 218 YASAKEG 224 (639)
Q Consensus 218 ~~SA~~g 224 (639)
+.|...+
T Consensus 205 ylsgV~n 211 (1077)
T COG5192 205 YLSGVEN 211 (1077)
T ss_pred Eeccccc
Confidence 8886544
No 338
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.63 E-value=2.4e-07 Score=77.74 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=65.6
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~g 340 (639)
|++.|.+++.....|+.+.|||.+|++++||+|.+.+.+ ...+|++|..++ .++++|.|||.|++ .+
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~-------~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~ 69 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG-------KTSRVKSIETFD----GELDEAGAGESVTLTLED 69 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC-------CeEEEEEEEECC----cEeCEEcCCCEEEEEECC
Confidence 578899988876677789999999999999999999753 457899998763 57999999999977 44
Q ss_pred CCCCCcCCeeee
Q 006610 341 MTKPSIGHTVAN 352 (639)
Q Consensus 341 l~~~~~Gdtl~~ 352 (639)
-+++..||.||.
T Consensus 70 ~~~i~~G~vl~~ 81 (81)
T cd03695 70 EIDVSRGDVIVA 81 (81)
T ss_pred ccccCCCCEEeC
Confidence 456889999873
No 339
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.63 E-value=4.9e-08 Score=104.45 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=89.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---- 134 (639)
..|++.|+|.+++|||||++.+....- +.-....+|-..-..++.|+-..|+++||||.-|---
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv------------evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN 234 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD------------EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN 234 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc------------ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence 468999999999999999998876511 1111123333344456777778999999999776432
Q ss_pred --HHHHHHhhc---cEEEEEEeCCCC----CchhHHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 135 --EVERVVGMV---EGAILVVDAGEG----PLAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 135 --ev~~~l~~a---D~allVVDa~~g----~~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
|......+| -+||++.|-++- +..|.. ++..++. .+.|.|+|+||+|... ++.+.+-.+++.+-+.
T Consensus 235 ~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLFaNK~~IlvlNK~D~m~--~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 235 IIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLFANKVTILVLNKIDAMR--PEDLDQKNQELLQTII 311 (620)
T ss_pred HHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHhcCCceEEEeecccccC--ccccCHHHHHHHHHHH
Confidence 222322333 358999996543 223322 2233322 3789999999999743 2222222222222222
Q ss_pred hcCCCCccccccEEecccccCCCCC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASS 228 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~ 228 (639)
.-+ .+|++..|+.+.++..
T Consensus 312 ~~~------~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 312 DDG------NVKVVQTSCVQEEGVM 330 (620)
T ss_pred hcc------CceEEEecccchhcee
Confidence 211 3789999999888444
No 340
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-06 Score=80.20 Aligned_cols=167 Identities=19% Similarity=0.217 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC--CccccccccccccccceeEeeeeEEEeec---CceEEEEeCCCCCCch
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI--PHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFG 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~--~~~~v~D~~~~e~ergiTi~~~~~~~~~~---~~~i~iIDTPGh~dF~ 133 (639)
+.-+|+++|.-++|||.++++|++...... ...++-|. -..+++.+ ...+.|.||.|..+.-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDi-------------Y~~svet~rgarE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDI-------------YVASVETDRGAREQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhh-------------eeEeeecCCChhheEEEeecccccCch
Confidence 356899999999999999999998755322 12222222 11222222 2478999999988874
Q ss_pred HHH-HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 134 GEV-ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 134 ~ev-~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
.+. ..++..+|+.+||+|..+.-..|-.++++.-.. ..+|++|..||+|+. ++.+. ..++...+..-
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~--~p~~v---d~d~A~~Wa~r-- 147 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA--EPREV---DMDVAQIWAKR-- 147 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc--cchhc---CHHHHHHHHhh--
Confidence 444 457788999999999988766666666654433 357889999999994 33221 11221222110
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCc
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPF 263 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~ 263 (639)
+ .+....++|.... .+-+-|..+...+-.|.....-|+
T Consensus 148 --E--kvkl~eVta~dR~--------------sL~epf~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 148 --E--KVKLWEVTAMDRP--------------SLYEPFTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred --h--heeEEEEEeccch--------------hhhhHHHHHHHhccCCcccccCcc
Confidence 1 1346777887776 777888888888877765433343
No 341
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.61 E-value=2.3e-07 Score=101.26 Aligned_cols=159 Identities=20% Similarity=0.116 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
-.+|+++|.-|+|||||+-+|+........+.+. .-|+|-+.. .-......|+||+-..+-...+..-
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---------~~i~IPadv---tPe~vpt~ivD~ss~~~~~~~l~~E 76 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---------PRILIPADV---TPENVPTSIVDTSSDSDDRLCLRKE 76 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccC---------CccccCCcc---CcCcCceEEEecccccchhHHHHHH
Confidence 3469999999999999999999986654433211 124443222 2234558999999877766677788
Q ss_pred HhhccEEEEEEeCCCC--CchhHHHHHHHHHHc-----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 140 VGMVEGAILVVDAGEG--PLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 140 l~~aD~allVVDa~~g--~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
++.||.+++|.+.++. +..-+.+|+-..++. ++|+|+|.||+|.........+....-+...|.+..
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE------ 150 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE------ 150 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH------
Confidence 9999999999987653 334455666666654 589999999999865433321221222333333322
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..+.|||++-. ++.++|...-+.+
T Consensus 151 --tciecSA~~~~--------------n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 151 --TCIECSALTLA--------------NVSELFYYAQKAV 174 (625)
T ss_pred --HHHhhhhhhhh--------------hhHhhhhhhhhee
Confidence 16788998877 6666666554444
No 342
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.61 E-value=3.2e-07 Score=94.71 Aligned_cols=162 Identities=17% Similarity=0.252 Sum_probs=90.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------Ccccccccccccccccee---EeeeeEE-------------E
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------PHERAMDSISLERERGIT---IASKVTG-------------I 114 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------~~~~v~D~~~~e~ergiT---i~~~~~~-------------~ 114 (639)
....-|.|+|.+|+|||||+++|+....... ...+..|.... +..|+. +...... +
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI-~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI-RATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHH-HhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 4578999999999999999999998642111 00111122111 111221 1110000 1
Q ss_pred eecCceEEEEeCCCC-CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHH
Q 006610 115 SWRENELNMVDTPGH-ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDE 193 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh-~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~ 193 (639)
...+..+.||++-|. ..= .+. -+. .+.-+.|++..+|... .+++-..+..+-++++||+|+.......+++
T Consensus 181 ~~~~~d~liIEnvGnLvcP-a~f--dlg-e~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~~~dle~ 252 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCP-ASF--DLG-EKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYLNFDVEK 252 (290)
T ss_pred hhcCCcEEEEECCCCccCC-Ccc--chh-hceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCcccHHHHHH
Confidence 112457788888884 110 000 011 1234577888777321 1223334466779999999996432223344
Q ss_pred HHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 194 VESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 194 v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
..+.+..+ .. ..+++.+||++|. |+++|+++|...
T Consensus 253 ~~~~lr~l----np-----~a~I~~vSA~tGe--------------Gld~L~~~L~~~ 287 (290)
T PRK10463 253 CIACAREV----NP-----EIEIILISATSGE--------------GMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHhh----CC-----CCcEEEEECCCCC--------------CHHHHHHHHHHh
Confidence 44433332 21 2569999999999 999999999753
No 343
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=3.2e-07 Score=85.05 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=79.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
.-++.++|--|+|||||+..|-...-.... -|.......+...+.+++-+|..||..-..-+..+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv---------------PTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdy 84 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV---------------PTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDY 84 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC---------------CCcCCChHHheecCceEEEEccccHHHHHHHHHHH
Confidence 457999999999999999877543221111 11122222344567889999999998877888889
Q ss_pred HhhccEEEEEEeCCCCCc-hhHHHHHHHH----HHcCCCcEEEEcCCCCCCCC
Q 006610 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKA----LKYGLRPILLLNKVDRPAVS 187 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~-~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~ 187 (639)
+..+|+++++|||.+.-. ...+..++.+ .-..+|+++..||+|++.+-
T Consensus 85 f~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 85 FPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 999999999999875432 2223333222 23589999999999998765
No 344
>PTZ00258 GTP-binding protein; Provisional
Probab=98.58 E-value=2.9e-07 Score=99.07 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-----------------ceE
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NEL 121 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----------------~~i 121 (639)
.-..|+|+|.+++|||||+++|... ........+.|+......+.+.+ .++
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~------------~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi 87 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQ------------QVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQL 87 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcC------------cccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCe
Confidence 3468999999999999999999765 12333345777777776666653 359
Q ss_pred EEEeCCCCCC-------chHHHHHHHhhccEEEEEEeCC
Q 006610 122 NMVDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (639)
Q Consensus 122 ~iIDTPGh~d-------F~~ev~~~l~~aD~allVVDa~ 153 (639)
.|+||||... ........++.+|++++|||+.
T Consensus 88 ~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 88 DITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred EEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9999999542 4446677889999999999985
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.57 E-value=1.8e-06 Score=90.20 Aligned_cols=142 Identities=17% Similarity=0.236 Sum_probs=96.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchH---
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG--- 134 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~--- 134 (639)
..||.++|..|.|||||+|.|+.+.-.... .+-+..+...++++.|......+.-++ ..+|+|||||..||..
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~--~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDET--EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCC--CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 579999999999999999999998432211 000111111345566666556665555 4688999999888642
Q ss_pred -----------HHHHHH-------h-------hccEEEEEEeC-CCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH
Q 006610 135 -----------EVERVV-------G-------MVEGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 135 -----------ev~~~l-------~-------~aD~allVVDa-~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (639)
+...+| | .++++|+.+-. .+|+.+...+.++.+.+ .+.+|-||-|.|. ...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~--lT~ 177 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADT--LTD 177 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeecccc--CCH
Confidence 111222 1 25679999984 57899999998888764 5788999999998 455
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 006610 189 ERCDEVESLVFDLFANLG 206 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g 206 (639)
+++....+.+...+....
T Consensus 178 ~El~~~K~~I~~~i~~~n 195 (373)
T COG5019 178 DELAEFKERIREDLEQYN 195 (373)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 666677777777766543
No 346
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.56 E-value=6.7e-07 Score=88.19 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------ch
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------FG 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-------F~ 133 (639)
-+|+++|.+.+|||||+..+.... ......--.|..+-...+.|++..|+++|.||... -+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~------------SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG 130 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH------------SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG 130 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch------------hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC
Confidence 479999999999999999998651 11122224566677778899999999999999643 23
Q ss_pred HHHHHHHhhccEEEEEEeCCCC
Q 006610 134 GEVERVVGMVEGAILVVDAGEG 155 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g 155 (639)
.++....+.||.+++|.||+.+
T Consensus 131 RQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 131 RQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ceEEEEeecccEEEEEecCCcc
Confidence 4566677889999999999874
No 347
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.55 E-value=2.8e-07 Score=78.47 Aligned_cols=82 Identities=27% Similarity=0.355 Sum_probs=67.1
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~g 340 (639)
|++.|.+++..++.|.+..|||.+|++++||.|.+.+... ....+|++|..++ .++++|.|||.|++ .+
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-----~~~~~V~si~~~~----~~~~~a~~G~~v~l~l~~ 71 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-----TLKTTVTGIEMFR----KTLDEAEAGDNVGVLLRG 71 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-----CceEEEEEEEECC----cCCCEECCCCEEEEEECC
Confidence 5788999998888999999999999999999999986421 1457888987653 57899999999877 45
Q ss_pred C--CCCCcCCeeeec
Q 006610 341 M--TKPSIGHTVANT 353 (639)
Q Consensus 341 l--~~~~~Gdtl~~~ 353 (639)
+ +++..|+.||++
T Consensus 72 ~~~~~v~rG~vl~~~ 86 (87)
T cd03697 72 VKREDVERGMVLAKP 86 (87)
T ss_pred CCHHHcCCccEEecC
Confidence 5 357889999875
No 348
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.53 E-value=4.4e-07 Score=76.51 Aligned_cols=79 Identities=29% Similarity=0.402 Sum_probs=65.7
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~g 340 (639)
|++.|.+++..+..|.+..|||.+|++++||++.+.+.+ ...+|++|... ..++++|.|||.|++ .+
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~-------~~~~V~sI~~~----~~~~~~a~aGd~v~i~l~~ 69 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG-------EETRVRSIQVH----GKDVEEAKAGDRVALNLTG 69 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC-------ceEEEEEEEEC----CcCcCEEcCCCEEEEEEcC
Confidence 578899999888899999999999999999999998753 45788898765 357899999999877 45
Q ss_pred C--CCCCcCCeeee
Q 006610 341 M--TKPSIGHTVAN 352 (639)
Q Consensus 341 l--~~~~~Gdtl~~ 352 (639)
+ +++..||.||+
T Consensus 70 ~~~~~i~~G~vl~~ 83 (83)
T cd03696 70 VDAKDLERGDVLSS 83 (83)
T ss_pred CCHHHcCCccEEcC
Confidence 4 36788998863
No 349
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.53 E-value=2.2e-07 Score=95.80 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=59.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc-----------------eEEEEe
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-----------------ELNMVD 125 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~-----------------~i~iID 125 (639)
|+|+|.+++|||||+++|++.. .......+.|+......+.+.+. .+.|+|
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~------------~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD 68 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG------------AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD 68 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC------------CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEE
Confidence 5899999999999999998762 12333356666666666555443 599999
Q ss_pred CCCCCC-------chHHHHHHHhhccEEEEEEeCCC
Q 006610 126 TPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 126 TPGh~d-------F~~ev~~~l~~aD~allVVDa~~ 154 (639)
+||..+ ++......++.+|++++|||+.+
T Consensus 69 ~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 69 IAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 999543 34466677889999999999853
No 350
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=5e-07 Score=85.36 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=70.7
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.....++++.+|.+|+|+|+.++...+...+...+...+.|+++|+||+|+.. ..... ....+....
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~--~~~~~----~~~~~~~~~------- 69 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVP--KEVLE----KWKSIKESE------- 69 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCC--HHHHH----HHHHHHHhC-------
Confidence 34567788889999999999887777777776767777899999999999843 21111 111222211
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..|++++||++|. |+++|++.|.+.+|.
T Consensus 70 ~~~~~~iSa~~~~--------------gi~~L~~~l~~~~~~ 97 (156)
T cd01859 70 GIPVVYVSAKERL--------------GTKILRRTIKELAKI 97 (156)
T ss_pred CCcEEEEEccccc--------------cHHHHHHHHHHHHhh
Confidence 2479999999998 999999999999874
No 351
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.50 E-value=9.1e-07 Score=75.29 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=67.1
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~g 340 (639)
|.+.|.+++..+..|.++.|||.+|++++||.+.+.+... + +....+|++|..+ ..++++|.|||.+++ .+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~-g--~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~ 73 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQD-G--SFRPVTVKSIHRN----RSPVRVVRAGQSASLALKK 73 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCC-C--CEeEEEEEEEEEC----CeECCEECCCCEEEEEEcC
Confidence 5688999998888999999999999999999999997531 1 2356789999865 468999999999877 45
Q ss_pred CC--CCCcCCeeee
Q 006610 341 MT--KPSIGHTVAN 352 (639)
Q Consensus 341 l~--~~~~Gdtl~~ 352 (639)
++ ++..|+.||.
T Consensus 74 i~~~~i~~G~vl~~ 87 (87)
T cd03694 74 IDRSLLRKGMVLVS 87 (87)
T ss_pred CCHHHcCCccEEeC
Confidence 53 5778888873
No 352
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.3e-06 Score=88.13 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=94.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCch----
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG---- 133 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~---- 133 (639)
-.++.++|..|.|||||+|.|+....... ...+.......+...+......++-++ ..++++||||..|+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~---~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGN---REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCC---cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 47999999999999999999998733211 111222233333555555555555554 467889999988743
Q ss_pred ----------HHHHHHHh-------------hccEEEEEEeC-CCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHH
Q 006610 134 ----------GEVERVVG-------------MVEGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (639)
Q Consensus 134 ----------~ev~~~l~-------------~aD~allVVDa-~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (639)
.....++. .++++|+.|.. .+|+.+.....++.+. .++.+|-||-|.|.. ..+
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~l--T~~ 174 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTL--TKD 174 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeeccccC--CHH
Confidence 12222221 35789999995 5779999998887765 468899999999984 455
Q ss_pred HHHHHHHHHHHHHHhcC
Q 006610 190 RCDEVESLVFDLFANLG 206 (639)
Q Consensus 190 ~~~~v~~~i~~l~~~~g 206 (639)
.+....+.+...+....
T Consensus 175 El~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHN 191 (366)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 55666666666655443
No 353
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.47 E-value=5e-07 Score=96.25 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-----------------ceEEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELNM 123 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----------------~~i~i 123 (639)
.+|+|+|.+++|||||+++|++.. ......++.|+......+.+.+ .++.|
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~------------~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l 70 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG------------AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF 70 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC------------CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE
Confidence 479999999999999999998762 2223345666666555554443 25999
Q ss_pred EeCCCCCC-------chHHHHHHHhhccEEEEEEeCC
Q 006610 124 VDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (639)
Q Consensus 124 IDTPGh~d-------F~~ev~~~l~~aD~allVVDa~ 153 (639)
+||||..+ +.......++.||++++|||+.
T Consensus 71 vD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 71 VDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred EECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 99999543 3345667789999999999985
No 354
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.43 E-value=1.1e-06 Score=84.45 Aligned_cols=151 Identities=19% Similarity=0.277 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc-------cccccccccccccceeE---eee-eEE----E----------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPH-------ERAMDSISLERERGITI---ASK-VTG----I---------- 114 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-------~~v~D~~~~e~ergiTi---~~~-~~~----~---------- 114 (639)
.+.|.+.|++|||||||+++++......... .+..|.....+..|..+ .+. ..+ +
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5789999999999999999999875432100 11122222222122222 111 001 0
Q ss_pred eecCceEEEEeCCCC--CCchHHHHHHHhhcc-EEEEEEeCCCCCchhHHHHHHHHHHcCCC-----cEEEEcCCCCCC-
Q 006610 115 SWRENELNMVDTPGH--ADFGGEVERVVGMVE-GAILVVDAGEGPLAQTKFVLAKALKYGLR-----PILLLNKVDRPA- 185 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh--~dF~~ev~~~l~~aD-~allVVDa~~g~~~qt~~~l~~~~~~~lp-----~IvviNKiD~~~- 185 (639)
.+.+..+.||.+.|- .-| .....| .-|+|+|.++|...-- .+-| -++||||.|+..
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~------sp~L~d~~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~~ 157 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPF------SPDLGDHLRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAPY 157 (202)
T ss_pred cCCcCCEEEEecCcceeccc------CcchhhceEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHHH
Confidence 011247888999881 122 123345 7899999999854221 1223 379999999843
Q ss_pred --CCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 186 --VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 186 --~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++.+.+ .+.+.. .. . +.|++++|+++|. |++++++++...
T Consensus 158 v~~dlevm---~~da~~----~n--p---~~~ii~~n~ktg~--------------G~~~~~~~i~~~ 199 (202)
T COG0378 158 VGADLEVM---ARDAKE----VN--P---EAPIIFTNLKTGE--------------GLDEWLRFIEPQ 199 (202)
T ss_pred hCccHHHH---HHHHHH----hC--C---CCCEEEEeCCCCc--------------CHHHHHHHHHhh
Confidence 232222 222211 11 1 3689999999999 999999998754
No 355
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.42 E-value=7.6e-06 Score=91.86 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=70.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG----- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~----- 133 (639)
...+|+++|.+|+|||||+|+|++...... .....++| ........+.+..+++|||||..+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~v----------ss~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~dq~~ 185 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFST----------DAFGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSASDQSK 185 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccc----------cCCCCCce-EEEEEEEEECCceEEEEECCCCCccccchHH
Confidence 357899999999999999999998632110 00112322 33333445678999999999987642
Q ss_pred -HH----HHHHHh--hccEEEEEEeCCCC-CchhHHHHHHHHHH-cCC----CcEEEEcCCCCCC
Q 006610 134 -GE----VERVVG--MVEGAILVVDAGEG-PLAQTKFVLAKALK-YGL----RPILLLNKVDRPA 185 (639)
Q Consensus 134 -~e----v~~~l~--~aD~allVVDa~~g-~~~qt~~~l~~~~~-~~l----p~IvviNKiD~~~ 185 (639)
.+ +.+++. .+|++|+|...... .......+++.+.+ +|- -.|||.+..|...
T Consensus 186 neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 186 NEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12 222333 36888888765322 22233344444432 232 3688999999853
No 356
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.42 E-value=4.7e-08 Score=92.07 Aligned_cols=161 Identities=21% Similarity=0.258 Sum_probs=106.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc---eEEEEeCCCCCCch
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN---ELNMVDTPGHADFG 133 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~---~i~iIDTPGh~dF~ 133 (639)
++...++.|+|..++|||+++.+.+.+.....+.. -|-.+.....+.|+++ ++.|||..|+..|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRA------------tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA------------TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHH------------HHhHHHHHHHhccChHHHHHHHHhcchhhhhhc
Confidence 45678899999999999999999998844221111 1222233334556653 67899999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH------cCC--CcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK------YGL--RPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~------~~l--p~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
....-+++.+.++.+|+|.+.........-|.+-.. .|. |+++..||||...... .+.-..+-+...+.
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---~~~~~~~d~f~ken 166 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---NEATRQFDNFKKEN 166 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh---hhhHHHHHHHHhcc
Confidence 999999999999999999776544333333333221 233 4678899999854322 22223333344455
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|+.. ++.+|++.+. ++++....+++.+
T Consensus 167 gf~g------wtets~Kenk--------------ni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 167 GFEG------WTETSAKENK--------------NIPEAQRELVEKI 193 (229)
T ss_pred Cccc------eeeecccccc--------------ChhHHHHHHHHHH
Confidence 5543 8899999988 7776666666543
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=5.9e-06 Score=81.15 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=88.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccccccccc-ceeEeeeeEEEeecC--ceEEEEeCCCCCCch--
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER-GITIASKVTGISWRE--NELNMVDTPGHADFG-- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~er-giTi~~~~~~~~~~~--~~i~iIDTPGh~dF~-- 133 (639)
-..||.++|.+|.|||||++.|....-... ...|. ..++-+ .+.+.+....++-++ .++++|||||+.|+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~---s~~~~-~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDS---SSSDN-SAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhc---cCCCc-ccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 458999999999999999999987532111 11111 222222 233444444444454 478999999988753
Q ss_pred ------------HHHHHHHh--------------hccEEEEEEeCC-CCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC
Q 006610 134 ------------GEVERVVG--------------MVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV 186 (639)
Q Consensus 134 ------------~ev~~~l~--------------~aD~allVVDa~-~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~ 186 (639)
.+.+.+|+ .++.+|+.+.++ +...+.+.++++.+.+ -+.+|-||-|.|...
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT- 198 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT- 198 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeeccccc-
Confidence 12223332 146788888865 4566777777776654 356788999999743
Q ss_pred CHHHHHHHHHHHHHHHHhcCCC
Q 006610 187 SEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 187 ~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.++..+..+.+.+-|...+++
T Consensus 199 -leEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 199 -LEERSAFKQRIRKELEKHGID 219 (336)
T ss_pred -HHHHHHHHHHHHHHHHhcCcc
Confidence 333344556666666655543
No 358
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.1e-07 Score=85.04 Aligned_cols=144 Identities=18% Similarity=0.128 Sum_probs=92.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
.++.++++|..|.||||++++.+.......+..+ -|.........-..+..+++.|||.|++.|.+.-..
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at----------~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPAT----------LGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCc----------ceeEEeeeeeecccCcEEEEeeecccceeecccccc
Confidence 4789999999999999999999876432211111 122222222222223478999999999999888777
Q ss_pred HHhhccEEEEEEeCCCCCchhHHH-HHHHH-H-HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKF-VLAKA-L-KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~-~l~~~-~-~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++-...++++++|.+..+.-+... |.+-+ + ..++|++++.||.|..... +..+-..+.. ..++.
T Consensus 79 yyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------~k~k~v~~~r-------kknl~ 145 (216)
T KOG0096|consen 79 YYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK------VKAKPVSFHR-------KKNLQ 145 (216)
T ss_pred cEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc------cccccceeee-------cccce
Confidence 777788899999987665544332 22222 2 2368999999999974311 1111111111 12345
Q ss_pred EEecccccCC
Q 006610 216 VLYASAKEGW 225 (639)
Q Consensus 216 vi~~SA~~g~ 225 (639)
.++.||+.+.
T Consensus 146 y~~iSaksn~ 155 (216)
T KOG0096|consen 146 YYEISAKSNY 155 (216)
T ss_pred eEEeeccccc
Confidence 8899999887
No 359
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.31 E-value=4e-06 Score=85.81 Aligned_cols=147 Identities=25% Similarity=0.233 Sum_probs=95.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCC------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHAD------ 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~d------ 131 (639)
....|+++|..|+|||||+++|+..+-. ..++. .-|.+........ .+..+.+.||-|+..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~--p~drL----------FATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~L 244 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY--PNDRL----------FATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQL 244 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC--ccchh----------heeccchhhhccCCCCcEEEEeechhhhhhCcHHH
Confidence 3578999999999999999999954221 11111 1222222222222 356788999999642
Q ss_pred ---chHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHHcCCC-------cEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 006610 132 ---FGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGLR-------PILLLNKVDRPAVSEERCDEVESLVFD 200 (639)
Q Consensus 132 ---F~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~lp-------~IvviNKiD~~~~~~~~~~~v~~~i~~ 200 (639)
|....+ -...+|.+|-|+|.+++. ..|-..++..+.+.++| +|=|=||+|.......
T Consensus 245 vaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e----------- 312 (410)
T KOG0410|consen 245 VAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE----------- 312 (410)
T ss_pred HHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-----------
Confidence 322222 235679999999987764 46666788999999996 3456788886543220
Q ss_pred HHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+. .-.+++||++|. |++++++++-..+-
T Consensus 313 --------~E~--n~~v~isaltgd--------------gl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 313 --------EEK--NLDVGISALTGD--------------GLEELLKAEETKVA 341 (410)
T ss_pred --------ccc--CCccccccccCc--------------cHHHHHHHHHHHhh
Confidence 000 116789999998 99999999866543
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.30 E-value=1.1e-05 Score=85.33 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=68.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccc--ccc---------ccccccceeEeeeeEE-------------E
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DSI---------SLERERGITIASKVTG-------------I 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~~---------~~e~ergiTi~~~~~~-------------~ 114 (639)
....|+++|+.|+||||++..|..........-.+. |.. .....+++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999876542211111111 111 0122334443322100 0
Q ss_pred eecCceEEEEeCCCCCCch----HHHHHHHh--------hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 115 SWRENELNMVDTPGHADFG----GEVERVVG--------MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~----~ev~~~l~--------~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
...++.+.||||||...+. .+.....+ ..+..+||+||+.|-.... .. +...+.--+.-+++||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a-~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QA-KAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HH-HHHHhhCCCCEEEEECCC
Confidence 1246789999999965432 34444433 3567899999996532221 12 111111123468999999
Q ss_pred CC
Q 006610 183 RP 184 (639)
Q Consensus 183 ~~ 184 (639)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 53
No 361
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.29 E-value=6.4e-06 Score=79.23 Aligned_cols=122 Identities=21% Similarity=0.233 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccc--cccc------c---ccccceeEeeeeEE-------------Eeec
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DSIS------L---ERERGITIASKVTG-------------ISWR 117 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~~~------~---e~ergiTi~~~~~~-------------~~~~ 117 (639)
.++++|++|+||||++..|..........-.+. |... . ..+.++.+...... ....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999888775432111111111 1110 0 11223332221110 1123
Q ss_pred CceEEEEeCCCCCCch----HHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC
Q 006610 118 ENELNMVDTPGHADFG----GEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~----~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (639)
++.+.|+||||...+. .+..... ...|.+++|+|+..+.. .....+......++ .-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 6779999999986443 2222222 23899999999965432 22334444444553 567889999753
No 362
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.28 E-value=2.3e-06 Score=81.08 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=63.6
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+.+++..+|.+++|+|+.++.......+.+.+... +.|+|+|+||+|+. +.+.. ......+.+. . .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~--~~~~~----~~~~~~~~~~-~-----~ 69 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV--PTWVT----ARWVKILSKE-Y-----P 69 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC--CHHHH----HHHHHHHhcC-C-----c
Confidence 56789999999999999987666666666666543 48999999999994 33221 1122222211 1 1
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+-++++||+++. |+++|++.|.+++
T Consensus 70 ~~~~~iSa~~~~--------------~~~~L~~~l~~~~ 94 (157)
T cd01858 70 TIAFHASINNPF--------------GKGSLIQLLRQFS 94 (157)
T ss_pred EEEEEeeccccc--------------cHHHHHHHHHHHH
Confidence 225789999998 9999999987653
No 363
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.23 E-value=2.3e-05 Score=75.75 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=55.7
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
+.+.+.|+|||+... .....++..+|.+|+++.+...........++.+.+.+.|..+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999997643 356678899999999999887766778888888888899999999999964
No 364
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=3.9e-06 Score=90.03 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=76.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc----CCCCCcccccccc---cccc------ccceeEeeeeEE-------EeecC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSI---SLER------ERGITIASKVTG-------ISWRE 118 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~---~~e~------ergiTi~~~~~~-------~~~~~ 118 (639)
+..+++++|++|+||||++.+|.... |.....-...|.. ..|+ ..|+.+...... -.+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 45789999999999999999998653 1111000011111 0111 123333222111 13457
Q ss_pred ceEEEEeCCCCCC---chHHHHHHHhhcc---EEEEEEeCCCCCchhHHHHHHHHHHcCCCc-------EEEEcCCCCC
Q 006610 119 NELNMVDTPGHAD---FGGEVERVVGMVE---GAILVVDAGEGPLAQTKFVLAKALKYGLRP-------ILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~d---F~~ev~~~l~~aD---~allVVDa~~g~~~qt~~~l~~~~~~~lp~-------IvviNKiD~~ 184 (639)
+.+.||||||..- +..+....+..++ -.+||++|+.+....+..++.+....++|. =++++|+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 8999999999763 4444445454444 359999999887776666666665554432 4788999974
No 365
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.1e-05 Score=89.93 Aligned_cols=160 Identities=21% Similarity=0.249 Sum_probs=97.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC----------------Ccccc--ccccccccccce--------------e
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------------PHERA--MDSISLERERGI--------------T 106 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------------~~~~v--~D~~~~e~ergi--------------T 106 (639)
..-+|+|.|...+||||++|+||.+.-... ..+.+ .|-. .|+..-. .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCC-cccccHHHHhHHHHhcCccccc
Confidence 356899999999999999999998753100 00000 0000 0000000 1
Q ss_pred EeeeeEEEeecC-------ceEEEEeCCCC---CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cE
Q 006610 107 IASKVTGISWRE-------NELNMVDTPGH---ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PI 175 (639)
Q Consensus 107 i~~~~~~~~~~~-------~~i~iIDTPGh---~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~I 175 (639)
-......+.|++ ..+.++|.||. ..+...+....-.+|.+|||+.|..-.+...+..+..+.+. .| ++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 122334445543 27899999995 45777788888899999999999876665556667777665 56 45
Q ss_pred EEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-ccccccEEecccccC
Q 006610 176 LLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLDFPVLYASAKEG 224 (639)
Q Consensus 176 vviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~-~~~~~Pvi~~SA~~g 224 (639)
++.||+|.....++-.+.+..++.+| .... .+..=-|+++||+.-
T Consensus 266 IlnnkwDasase~ec~e~V~~Qi~eL----~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 266 ILNNKWDASASEPECKEDVLKQIHEL----SVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred EEechhhhhcccHHHHHHHHHHHHhc----CcccHhhhcCeeEEEeccch
Confidence 67789998765555555566665433 2110 000112889997643
No 366
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=2.6e-05 Score=82.27 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe------------------ecCceEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS------------------WRENELN 122 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~------------------~~~~~i~ 122 (639)
.+++|+|-+|+|||||.++|+..... ....+-.||........ +-...+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~------------~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve 70 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAE------------IANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVE 70 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCcc------------ccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeE
Confidence 57999999999999999999987421 11112222222222111 1124689
Q ss_pred EEeCCCCCC-------chHHHHHHHhhccEEEEEEeCC
Q 006610 123 MVDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (639)
Q Consensus 123 iIDTPGh~d-------F~~ev~~~l~~aD~allVVDa~ 153 (639)
|+|.+|... ++.....-+|.+|+++.|||+.
T Consensus 71 ~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 71 FVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred EEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 999999543 5667778899999999999986
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.19 E-value=2.9e-05 Score=80.38 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=67.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccc-----c------ccccceeEeeeeE-----E-----E---
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----L------ERERGITIASKVT-----G-----I--- 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----~------e~ergiTi~~~~~-----~-----~--- 114 (639)
+.+.|+++|++|+||||++-.|..........-.+.|.+. . ...+++.+..... . +
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998888754321111111111110 1 1233433321100 0 0
Q ss_pred eecCceEEEEeCCCCCCchH----HHHHH---Hh-----hccEEEEEEeCCCCCchhHHHHHHHHH-HcCCCcEEEEcCC
Q 006610 115 SWRENELNMVDTPGHADFGG----EVERV---VG-----MVEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNKV 181 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~~----ev~~~---l~-----~aD~allVVDa~~g~~~qt~~~l~~~~-~~~lp~IvviNKi 181 (639)
...++.+.||||||...... +.... .. .+|.++||+|+..+-. +........ ..+ ..-+++||+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~-~~g~IlTKl 227 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVG-LTGIILTKL 227 (272)
T ss_pred HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCC-CCEEEEEcc
Confidence 12468999999999764332 22222 22 3789999999975422 222222222 222 346889999
Q ss_pred CCC
Q 006610 182 DRP 184 (639)
Q Consensus 182 D~~ 184 (639)
|..
T Consensus 228 De~ 230 (272)
T TIGR00064 228 DGT 230 (272)
T ss_pred CCC
Confidence 973
No 368
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.18 E-value=4.7e-06 Score=81.51 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHH-HH-HHh
Q 006610 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVF-DL-FAN 204 (639)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~-~l-~~~ 204 (639)
|.+..|...+..++..+|++|+|+|+.+........++. ...+.|+++|+||+|+..... ....+ +... .+ ...
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~-~~~~~~~~~~~ 94 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRI-KNWLRAKAAAG 94 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHH-HHHHHHHHHhh
Confidence 444447888899999999999999998754333333322 235789999999999854221 11111 1111 01 111
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+... .+++++||++|+ |+++|++.|.+++|
T Consensus 95 ~~~~~----~~i~~vSA~~~~--------------gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKP----KDVILISAKKGW--------------GVEELINAIKKLAK 125 (190)
T ss_pred cCCCc----ccEEEEECCCCC--------------CHHHHHHHHHHHhh
Confidence 22111 258999999999 99999999999886
No 369
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.15 E-value=1.1e-05 Score=75.81 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
++.+.||||||.. ......+..+|-+|+|+... .....-+.+...+..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe----~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPG----AGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCC----chhHHHHhhhhHhhhcCEEEEeCCC
Confidence 6899999999964 33345899999999998876 2233333444455556799999998
No 370
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=5.9e-05 Score=78.44 Aligned_cols=127 Identities=24% Similarity=0.229 Sum_probs=91.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCC--CCCc-------cccccccccccccceeEeeee-EEEe------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA--DIPH-------ERAMDSISLERERGITIASKV-TGIS------------ 115 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~--~~~~-------~~v~D~~~~e~ergiTi~~~~-~~~~------------ 115 (639)
...+-|.++|+-..||||+++.|+.+... .... ..+|.-+.++.-.|.+..... ..|.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 34567999999999999999999987542 1111 134444444444555443221 0010
Q ss_pred -----ec---CceEEEEeCCCC-----------CCchHHHHHHHhhccEEEEEEeCCC-CCchhHHHHHHHHHHcCCCcE
Q 006610 116 -----WR---ENELNMVDTPGH-----------ADFGGEVERVVGMVEGAILVVDAGE-GPLAQTKFVLAKALKYGLRPI 175 (639)
Q Consensus 116 -----~~---~~~i~iIDTPGh-----------~dF~~ev~~~l~~aD~allVVDa~~-g~~~qt~~~l~~~~~~~lp~I 175 (639)
.. -.+++||||||. -||.+-.+-....||.++|++|+.. .+...+.+++..++-+.-.+-
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiR 215 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIR 215 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeE
Confidence 00 137999999994 3788888888899999999999754 577889999999988888889
Q ss_pred EEEcCCCCC
Q 006610 176 LLLNKVDRP 184 (639)
Q Consensus 176 vviNKiD~~ 184 (639)
||+||.|..
T Consensus 216 VVLNKADqV 224 (532)
T KOG1954|consen 216 VVLNKADQV 224 (532)
T ss_pred EEecccccc
Confidence 999999984
No 371
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.13 E-value=2e-05 Score=85.93 Aligned_cols=123 Identities=17% Similarity=0.098 Sum_probs=68.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--cccc--------c-cccccceeEeeeeEEE-------------e
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSI--------S-LERERGITIASKVTGI-------------S 115 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~--------~-~e~ergiTi~~~~~~~-------------~ 115 (639)
...|+++|..|+||||++..|............+ .|.. . .....++.+......- .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999987543111111011 1111 0 1222344433211100 0
Q ss_pred ecCceEEEEeCCCCCCc----hHHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 116 WRENELNMVDTPGHADF----GGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF----~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
-.++.+.||||||.... ..+....... .|-++||+||..|-.. ....+...+.--+.-+++||+|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 13689999999996543 3344443333 4679999999876332 222222222222457889999974
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.11 E-value=1.2e-05 Score=74.76 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=59.2
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+++.+++..+|.+|+|+|+.++...+...+.+.+... +.|+++|+||+|+.. ... ..+..+.+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~--~~~----~~~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT--EEQ----RKAWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC--HHH----HHHHHHHHHhcC-----
Confidence 5678899999999999999988877777777777766 899999999999842 222 122333343333
Q ss_pred ccccEEecccccCC
Q 006610 212 LDFPVLYASAKEGW 225 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~ 225 (639)
.+++++||+++.
T Consensus 72 --~~ii~iSa~~~~ 83 (141)
T cd01857 72 --IVVVFFSALKEN 83 (141)
T ss_pred --CeEEEEEecCCC
Confidence 358999999886
No 373
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.11 E-value=7.4e-06 Score=80.16 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=84.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCCchHHH--
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEV-- 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~dF~~ev-- 136 (639)
.++|.++|..|+|||++=..+...- ....-+..|-||+....++.+-| .-+|+||+.|+..|....
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny-----------~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~ 72 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANY-----------IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLS 72 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhh-----------hhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHh
Confidence 4789999999999999866655321 01112345888888888887755 789999999998776543
Q ss_pred ---HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc------CCCcEEEEcCCCCCCCCH
Q 006610 137 ---ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY------GLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 137 ---~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~------~lp~IvviNKiD~~~~~~ 188 (639)
...++.++..++|+|+....+..+....+.|.+. ..++++.+.|+|+...+.
T Consensus 73 ~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 73 SQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred hcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 3467889999999998766555555444444332 344678999999966543
No 374
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.09 E-value=9.8e-06 Score=77.92 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCCCC-CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 126 TPGHA-DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 126 TPGh~-dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
-|||- .-..++...+..+|.+++|+|+.++.......++..+ .+.|+++|+||+|+.. ... + .+..+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~--~~~---~-~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLAD--PKK---T-KKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCC--hHH---H-HHHHHHHHh
Confidence 36663 3456778889999999999999877665555554433 3679999999999842 221 1 112122222
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+ .+++++||+++. |+++|++.+...+|
T Consensus 74 ~~-------~~vi~iSa~~~~--------------gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KG-------EKVLFVNAKSGK--------------GVKKLLKAAKKLLK 101 (171)
T ss_pred cC-------CeEEEEECCCcc--------------cHHHHHHHHHHHHH
Confidence 11 348999999998 99999999998875
No 375
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.02 E-value=8.6e-06 Score=77.11 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+|+++|.+|+|||||+|+|+.... .......|.|....... .+..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~-----------~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV-----------CKVAPIPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc-----------eeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 35799999999999999999987522 22334456665433222 2346899999993
No 376
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.02 E-value=1.7e-05 Score=82.50 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=71.0
Q ss_pred CCCCC-chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 127 PGHAD-FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 127 PGh~d-F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
|||-. ...++...+..+|.+|+|+||..+.......+.+.+ .+.|+|+|+||+|+.. .... +...+.+...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~--~~~~----~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLAD--PAVT----KQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCC--HHHH----HHHHHHHHHc
Confidence 78743 456788899999999999999877665555555544 3789999999999842 2211 1222223222
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+ .+++++||+++. |++.|++.+.+.+|.
T Consensus 77 ~-------~~vi~iSa~~~~--------------gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 G-------IKALAINAKKGK--------------GVKKIIKAAKKLLKE 104 (276)
T ss_pred C-------CeEEEEECCCcc--------------cHHHHHHHHHHHHHH
Confidence 2 368999999998 999999999888764
No 377
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.00 E-value=5.6e-05 Score=66.20 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCCCceeEEEeeeeec--------ccceEEEEEEEeeeeecCCEEEEeecc---CCC-Cc-eeEEeEEEEEEeeeCCcee
Q 006610 259 LDAPFQMLVTMMEKDF--------YLGRILTGRVSSGVVSVGDKVHGLRIT---DSG-TE-KIEEGKVTKLMKKKGTGMV 325 (639)
Q Consensus 259 ~~~p~~~~V~~~~~d~--------~~G~i~~grV~sG~l~~gd~v~~~~~~---~~~-~~-~~~~~kV~~l~~~~g~~~~ 325 (639)
.++|+.|+|...+... ..|.++-|+|.+|.|+.||.|.+.+.- +.+ .. .....+|.+|+.++ .
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~----~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAEN----N 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecC----c
Confidence 4789999998887665 789999999999999999999887431 000 00 12345777777653 5
Q ss_pred eeccCCCCceEEe-cCCC
Q 006610 326 LIDSAGAGDIISV-AGMT 342 (639)
Q Consensus 326 ~v~~a~aGdIv~i-~gl~ 342 (639)
.+++|.||+.++| ++|+
T Consensus 78 ~l~~a~pGgliGvgT~Ld 95 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLD 95 (113)
T ss_pred cccEEeCCCeEEEccccC
Confidence 8999999999999 4554
No 378
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.98 E-value=1.7e-05 Score=80.94 Aligned_cols=87 Identities=26% Similarity=0.413 Sum_probs=62.2
Q ss_pred HHHHhhccEEEEEEeCCCCC--chhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 137 ERVVGMVEGAILVVDAGEGP--LAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~--~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
..+++.+|.+++|+|+.+.. .....+++..+...++|+++|+||+|+..... +..+..+.+...+ +
T Consensus 31 r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~-----~~~~~~~~~~~~g-------~ 98 (245)
T TIGR00157 31 RPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED-----MEKEQLDIYRNIG-------Y 98 (245)
T ss_pred CcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH-----HHHHHHHHHHHCC-------C
Confidence 34688899999999988643 33445566677778999999999999953211 2222223343333 5
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
+++++||++|. |+++|++.+.
T Consensus 99 ~v~~~SAktg~--------------gi~eLf~~l~ 119 (245)
T TIGR00157 99 QVLMTSSKNQD--------------GLKELIEALQ 119 (245)
T ss_pred eEEEEecCCch--------------hHHHHHhhhc
Confidence 69999999998 9999998874
No 379
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.97 E-value=2.9e-05 Score=73.36 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=57.8
Q ss_pred cEEEEEEeCCCCCchhHHHHH-HHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccc
Q 006610 144 EGAILVVDAGEGPLAQTKFVL-AKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAK 222 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l-~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~ 222 (639)
|.+|+|+|+.++.......+. ..+...+.|+|+|+||+|+.. .+...+ .+ ..+.... ..+++++||+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~--~~~~~~---~~-~~~~~~~------~~~ii~vSa~ 68 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP--KEVLRK---WL-AYLRHSY------PTIPFKISAT 68 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC--HHHHHH---HH-HHHHhhC------CceEEEEecc
Confidence 789999999887665555554 456677899999999999843 222111 11 1122111 1358999999
Q ss_pred cCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 223 EGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 223 ~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|. |++.|++.|.+.++
T Consensus 69 ~~~--------------gi~~L~~~i~~~~~ 85 (155)
T cd01849 69 NGQ--------------GIEKKESAFTKQTN 85 (155)
T ss_pred CCc--------------ChhhHHHHHHHHhH
Confidence 998 99999999877643
No 380
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.97 E-value=9.3e-05 Score=62.51 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=62.4
Q ss_pred eEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC
Q 006610 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT 342 (639)
Q Consensus 265 ~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~ 342 (639)
+.|.+++.....|.++.+||.+|++++|+.+.+.+.+. -....+|.+|..+ ..++++|.+|+-|.| .+++
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~----~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~ 74 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGE----VIYEGKISSLKRF----KDDVKEVKKGYECGITLENFN 74 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCC----EEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcc
Confidence 45666666556789999999999999999999997531 2345788888866 358999999999877 5788
Q ss_pred CCCcCCee
Q 006610 343 KPSIGHTV 350 (639)
Q Consensus 343 ~~~~Gdtl 350 (639)
+++.||+|
T Consensus 75 d~~~Gdvi 82 (84)
T cd03692 75 DIKVGDII 82 (84)
T ss_pred cCCCCCEE
Confidence 89999987
No 381
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.96 E-value=1.4e-05 Score=77.02 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=41.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+|+++|.+|+|||||+|+|++.. ........|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~-----------~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSR-----------ACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc-----------cceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 4689999999999999999999752 2233445688876544333 347999999994
No 382
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.93 E-value=6.3e-06 Score=77.98 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
+.++++|++|+|||||+|+|+....... ..+ +....+-+.+|.......+ .....||||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t--~~i--s~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT--GEI--SEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------SEEEEEE---TTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh--hhh--hcccCCCcccCCCeeEEec---CCCcEEEECCCCCcc
Confidence 6899999999999999999997632111 001 1111222334444433333 345799999998887
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=97.91 E-value=0.00011 Score=78.11 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--cccc---------ccccccceeEeeeeE-----E--------E
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSI---------SLERERGITIASKVT-----G--------I 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~---------~~e~ergiTi~~~~~-----~--------~ 114 (639)
+.+.|+++|.+|+||||++..|..........-.+ .|.. .....-|+.+..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35789999999999999888776542211000000 1110 001112332211110 0 0
Q ss_pred eecCceEEEEeCCCCCC----chHHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHH-HcCCCcEEEEcCCCCC
Q 006610 115 SWRENELNMVDTPGHAD----FGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNKVDRP 184 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~d----F~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~-~~~lp~IvviNKiD~~ 184 (639)
...++.+.||||||... +..+.....+ ..|.++||+||..|- ......+... ..++ --+++||+|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~-~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGI-DGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCC-CEEEEeeecCC
Confidence 11356799999999653 3344433333 358899999997652 2222122221 1222 46889999974
No 384
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.90 E-value=1.9e-05 Score=74.55 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=42.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
...+++++|++++|||||+|+|+.... ......+++|.......+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~-----------~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK-----------LKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc-----------ccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 357899999999999999999997632 123344577766655443 357999999994
No 385
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.87 E-value=0.00032 Score=72.04 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCC-------CCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHH
Q 006610 171 GLRPILLLNKVDRPA-------VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (639)
Q Consensus 171 ~lp~IvviNKiD~~~-------~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~ 243 (639)
|+|++||++|+|... .+.+.++.+...+++++..+|+. .+|.|++... +++-
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-------LiyTSvKE~K--------------Nidl 280 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-------LIYTSVKETK--------------NIDL 280 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-------eEEeeccccc--------------chHH
Confidence 789999999999732 22244555667777888888864 8999999987 8999
Q ss_pred HHHHHHhhC
Q 006610 244 LLDAIIRHV 252 (639)
Q Consensus 244 Lld~I~~~l 252 (639)
|...|+..+
T Consensus 281 lyKYivhr~ 289 (473)
T KOG3905|consen 281 LYKYIVHRS 289 (473)
T ss_pred HHHHHHHHh
Confidence 999888754
No 386
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.86 E-value=3e-05 Score=81.01 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCCCC-chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 126 TPGHAD-FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 126 TPGh~d-F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
-|||-. -..+....+..+|.+|+|+|+..+.......+.+... +.|+|+|+||+|+. +... .+...+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~--~~~~----~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA--DPEV----TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC--CHHH----HHHHHHHHHH
Confidence 478743 3456788999999999999998876665555444432 78999999999984 2221 1222233332
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.+ .+++++||+++. |++.|++.+.+.+|..
T Consensus 79 ~~-------~~vi~vSa~~~~--------------gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QG-------IKALAINAKKGQ--------------GVKKILKAAKKLLKEK 108 (287)
T ss_pred cC-------CeEEEEECCCcc--------------cHHHHHHHHHHHHHHH
Confidence 22 468999999998 9999999998877643
No 387
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.86 E-value=2.4e-05 Score=72.73 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~ 130 (639)
+++++|.+|+|||||+|+|+..... ......|.|..... +..+ ..+.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-----------~~~~~~~~~~~~~~--~~~~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-----------SVSATPGKTKHFQT--IFLT-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-----------eeCCCCCcccceEE--EEeC-CCEEEEECCCcC
Confidence 7999999999999999999865221 12223344444332 3333 368999999963
No 388
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.86 E-value=0.00019 Score=79.48 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=46.0
Q ss_pred CCCcEEEEcCCCCCC-------CCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHH
Q 006610 171 GLRPILLLNKVDRPA-------VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (639)
Q Consensus 171 ~lp~IvviNKiD~~~-------~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~ 243 (639)
|+|++||++|.|... +..+.++-+...++.++..+|+. .+|+|.+... +++-
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-------L~yts~~~~~--------------n~~~ 254 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-------LIYTSVKEEK--------------NLDL 254 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-------EEEeeccccc--------------cHHH
Confidence 589999999999632 33344556667777777777764 8899998886 8888
Q ss_pred HHHHHHhhC
Q 006610 244 LLDAIIRHV 252 (639)
Q Consensus 244 Lld~I~~~l 252 (639)
|...|...+
T Consensus 255 L~~yi~h~l 263 (472)
T PF05783_consen 255 LYKYILHRL 263 (472)
T ss_pred HHHHHHHHh
Confidence 888887665
No 389
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.85 E-value=5.3e-05 Score=71.97 Aligned_cols=119 Identities=20% Similarity=0.190 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCC-------Cccccccccccccc--cceeEeeeeEEEe-----------------
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADI-------PHERAMDSISLERE--RGITIASKVTGIS----------------- 115 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~-------~~~~v~D~~~~e~e--rgiTi~~~~~~~~----------------- 115 (639)
-+.++|..|+|||||+++++....... ....-.|....... +-+.+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 468999999999999999997632100 01111122111111 1111111111110
Q ss_pred --ecCceEEEEeCCCCCCchHHHH--------HHHhhccEEEEEEeCCCCCchh--HHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 116 --WRENELNMVDTPGHADFGGEVE--------RVVGMVEGAILVVDAGEGPLAQ--TKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 116 --~~~~~i~iIDTPGh~dF~~ev~--------~~l~~aD~allVVDa~~g~~~q--t~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
.....+.+|||||..+-..... .....+|+++.|||+....... ...+. .+....-++++||+|+
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~---~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQ---SQIAFADRILLNKTDL 158 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHH---HHHHHCCEEEEecccC
Confidence 1245789999999876333222 2334478999999986533211 11111 2223345889999995
No 390
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.81 E-value=4.9e-05 Score=75.66 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=76.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------ch
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------FG 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-------F~ 133 (639)
-++.++|.+.+|||||+..|.+. ..+....-+.|...-.....|++-+|.+.|.||..+ -+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~------------~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg 127 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT------------FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG 127 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC------------CCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc
Confidence 47999999999999999999865 223333335555555566779999999999999654 23
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHH-HHHHcC-----CCcEEEEcCCCCCCC
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLA-KALKYG-----LRPILLLNKVDRPAV 186 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~-~~~~~~-----lp~IvviNKiD~~~~ 186 (639)
.++....+.|..+++|.|+...+.. +.+++ .+.-+| -|+=+..-|-|+-+.
T Consensus 128 ~qviavartcnli~~vld~~kp~~h--k~~ie~eleg~girlnk~pp~i~~kkKdkgGI 184 (358)
T KOG1487|consen 128 KQVIAVARTCNLIFIVLDVLKPLSH--KKIIEKELEGFGIRLNKQPPNIGTKKKDKGGI 184 (358)
T ss_pred cEEEEEeecccEEEEEeeccCcccH--HHHHHHhhhcceeeccCCCCCccccccccCce
Confidence 4566677889999999999875432 22333 233333 355555556665443
No 391
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.80 E-value=3e-05 Score=75.80 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
.+++++|.+|+|||||+|+|+......... -........+|+|.......+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~---~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL---KDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc---ccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 579999999999999999999863211100 0011233445877776555543 26899999994
No 392
>PRK12289 GTPase RsgA; Reviewed
Probab=97.80 E-value=8.1e-05 Score=79.70 Aligned_cols=84 Identities=27% Similarity=0.326 Sum_probs=60.6
Q ss_pred HHhhccEEEEEEeCCCCC-ch-hHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 139 VVGMVEGAILVVDAGEGP-LA-QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~-~~-qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
++..+|.+++|+|+.+.. .. ...+++..+...++|+|+|+||+|+.. .... +...+.+..+| +++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~--~~~~----~~~~~~~~~~g-------~~v 152 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS--PTEQ----QQWQDRLQQWG-------YQP 152 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC--hHHH----HHHHHHHHhcC-------CeE
Confidence 578899999999987643 33 335666677778999999999999953 2221 22233333333 468
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
+++||++|. |+++|++.+.
T Consensus 153 ~~iSA~tg~--------------GI~eL~~~L~ 171 (352)
T PRK12289 153 LFISVETGI--------------GLEALLEQLR 171 (352)
T ss_pred EEEEcCCCC--------------CHHHHhhhhc
Confidence 999999998 9999998884
No 393
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.79 E-value=0.00024 Score=68.13 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=71.9
Q ss_pred EcCCCCCHHHHHHHHHHHcCCCCCcccccccccccccc----ceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 66 IAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER----GITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 66 iGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~er----giTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
-+..|+||||+.-.|....-......-+.|.++..... +..........+.-...+.|||||+..+. ....++.
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~~l~ 83 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFITAIA 83 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHHHHH
Confidence 34789999999888766532222222233333211000 00000000000001117999999987554 4667889
Q ss_pred hccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCC
Q 006610 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPA 185 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~ 185 (639)
.+|.+|+++++.......+...++.+.+.+.+ ..+|+|++|...
T Consensus 84 ~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 84 PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred hCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 99999999998877777777778887777766 468999998643
No 394
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.75 E-value=0.00022 Score=63.00 Aligned_cols=99 Identities=18% Similarity=0.091 Sum_probs=67.8
Q ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCC-CCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 63 VAVIA-HVDHGKTTLMDRLLRQCGAD-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 63 IaIiG-h~~~GKTTLv~~Ll~~~g~~-~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
|+++| ..|+||||+.-.|....-.. .....+.|.++... ..+.|+|||+..+. ....++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~-----------------~D~IIiDtpp~~~~--~~~~~l 62 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG-----------------DDYVVVDLGRSLDE--VSLAAL 62 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC-----------------CCEEEEeCCCCcCH--HHHHHH
Confidence 45544 47899999887776553222 22223334333211 17999999997653 456789
Q ss_pred hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC----cEEEEcC
Q 006610 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR----PILLLNK 180 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp----~IvviNK 180 (639)
..+|.+|+++++...-...+...++.+++.+.+ +.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 999999999998877777788888887777654 4588886
No 395
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.75 E-value=0.00038 Score=64.56 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=67.1
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhcc
Q 006610 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVE 144 (639)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD 144 (639)
.-+..|+||||+.-.|............+.|.+... -.+ .+.+.++|||+..+ .....++..+|
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~----~~~----------~yd~VIiD~p~~~~--~~~~~~l~~aD 68 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL----ANL----------DYDYIIIDTGAGIS--DNVLDFFLAAD 68 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC----CCC----------CCCEEEEECCCCCC--HHHHHHHHhCC
Confidence 345688999999888776532222222233332210 000 17899999998643 44567899999
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHc--CCCcEEEEcCCCC
Q 006610 145 GAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDR 183 (639)
Q Consensus 145 ~allVVDa~~g~~~qt~~~l~~~~~~--~lp~IvviNKiD~ 183 (639)
.+++|+++...-...+...++.+.+. ..+..+++|+++.
T Consensus 69 ~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 69 EVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred eEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99999998765555566666666443 3456799999985
No 396
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.75 E-value=0.00017 Score=62.24 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=65.0
Q ss_pred eeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCC
Q 006610 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343 (639)
Q Consensus 264 ~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 343 (639)
++.|.....++..|.++..-|.+|+|++||.+.... ...||+.|+...| .++++|.||+.|-|.|+++
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~---------~~gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~ 69 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT---------TYGKVRAMFDENG---KRVKEAGPSTPVEILGLKG 69 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc---------cccEEEEEECCCC---CCCCEECCCCcEEEcCCCC
Confidence 467888888999999999999999999999998753 3469999998877 5799999999999999987
Q ss_pred C-CcCCeeee
Q 006610 344 P-SIGHTVAN 352 (639)
Q Consensus 344 ~-~~Gdtl~~ 352 (639)
+ ..||.+..
T Consensus 70 ~P~aGd~~~~ 79 (95)
T cd03702 70 VPQAGDKFLV 79 (95)
T ss_pred CCCCCCEEEE
Confidence 6 56776643
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.72 E-value=0.00024 Score=70.00 Aligned_cols=122 Identities=20% Similarity=0.261 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCcc--ccccccc---------cccccceeEeeeeE----------E---Eee
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHE--RAMDSIS---------LERERGITIASKVT----------G---ISW 116 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~--~v~D~~~---------~e~ergiTi~~~~~----------~---~~~ 116 (639)
+.|+++|+.|+||||.+-+|..........- -..|... ..+.-|+.+..... . +.-
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4689999999999999988876543211100 0011111 01111332211110 0 111
Q ss_pred cCceEEEEeCCCCCCchH----HHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFGG----EVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~----ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
+++.+.||||||...+.. +....+. ..+-++||+||+.+.. ....+.......++. =++++|+|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCc-eEEEEeecCC
Confidence 357899999999765443 3333333 3467999999987643 333455555555555 4559999974
No 398
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.71 E-value=4.1e-05 Score=82.58 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
++++++|.+|+|||||+|+|+........ .......+|.|....... . +..+.|+||||..... .+...+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~------~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~-~~~~~l 224 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD------VITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSH-QMAHYL 224 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc------eeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChh-Hhhhhc
Confidence 58999999999999999999986432111 112334467776644333 2 2346899999976532 111111
Q ss_pred -----------hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC
Q 006610 141 -----------GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (639)
Q Consensus 141 -----------~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (639)
.......+.+|....++......+......+..+.++++|-+..+
T Consensus 225 ~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 225 DKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred CHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 123456777776554443333333333333455677888877654
No 399
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.71 E-value=7.5e-05 Score=71.77 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=40.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+++++|.+++|||||+++|+.... .......+.|.......+. ..+.+|||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~-----------~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV-----------AKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-----------eeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 46899999999999999999997522 1122233566665544442 57899999995
No 400
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.69 E-value=0.00012 Score=78.26 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-----------------CceEEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-----------------ENELNM 123 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-----------------~~~i~i 123 (639)
.+++|+|.+++|||||+++|+....+.. ......|+......+.+. ...+.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-----------a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~ 71 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-----------ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF 71 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-----------CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence 5799999999999999999987743111 111222233333223222 236899
Q ss_pred EeCCCCCC-------chHHHHHHHhhccEEEEEEeCCC
Q 006610 124 VDTPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 124 IDTPGh~d-------F~~ev~~~l~~aD~allVVDa~~ 154 (639)
+|.||... ++......++.+|+++.|||+.+
T Consensus 72 ~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 72 VDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred EeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99999643 56678889999999999999864
No 401
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.68 E-value=0.00024 Score=78.19 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=67.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--cccc-c--------cccccceeEeeeeEE----------E-ee
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSI-S--------LERERGITIASKVTG----------I-SW 116 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~-~--------~e~ergiTi~~~~~~----------~-~~ 116 (639)
+...|+++|.+|+||||++..|............+ .|.. + ....-++.+...... + ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999998886543211111000 0110 0 011123332211100 0 01
Q ss_pred cCceEEEEeCCCCCCchHH----HH--HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCc-EEEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFGGE----VE--RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRP-ILLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~e----v~--~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~-IvviNKiD~~ 184 (639)
.++.+.||||||...+... .. ..+..+|.++||+||..|- ..+..+..+ .+++ -+++||+|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 2458999999997654322 22 2344679999999998762 223334333 2444 5788999963
No 402
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.67 E-value=0.00063 Score=71.95 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------ccccccc---cccccccceeEeeeeEEEe---------------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIP-------HERAMDS---ISLERERGITIASKVTGIS--------------- 115 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------~~~v~D~---~~~e~ergiTi~~~~~~~~--------------- 115 (639)
+...|-|--|||||||+++|+.+...... .+--.|. .....+.-..+......+.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 45789999999999999999988652110 1111121 1111111222333333333
Q ss_pred ecCceEEEEeCCCCCCchHHHHHHH--------hhccEEEEEEeCCCCCchhH---HHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 116 WRENELNMVDTPGHADFGGEVERVV--------GMVEGAILVVDAGEGPLAQT---KFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF~~ev~~~l--------~~aD~allVVDa~~g~~~qt---~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.+.....+|.|-|.++=..-+.... -..|++|-||||........ ....++ ....=++++||.|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Q---ia~AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQ---LAFADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHH---HHhCcEEEEecccCC
Confidence 1245788999999887433333222 23588999999986544332 122222 223458999999995
Q ss_pred C
Q 006610 185 A 185 (639)
Q Consensus 185 ~ 185 (639)
.
T Consensus 159 ~ 159 (323)
T COG0523 159 D 159 (323)
T ss_pred C
Confidence 4
No 403
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.67 E-value=0.00016 Score=78.04 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
..+|......+...+|.+++|+|+.+-...-...+.+.+ .+.|+++|+||+|+...+. ...++.+.+.+.+...+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~-~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSV-NLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCC-CHHHHHHHHHHHHHHcCCC
Confidence 447888777788899999999999765433333333332 2679999999999854221 1133344444455555543
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
. ..++.+||++|+ |+++|++.|.++
T Consensus 127 ~----~~i~~vSAk~g~--------------gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 P----VDIILVSAKKGN--------------GIDELLDKIKKA 151 (360)
T ss_pred c----CcEEEecCCCCC--------------CHHHHHHHHHHH
Confidence 1 138899999999 999999998765
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00023 Score=79.02 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=65.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCC--CCccccc--ccccc---c------cccceeEeeeeEEE-------eecC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD--IPHERAM--DSISL---E------RERGITIASKVTGI-------SWRE 118 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~--~~~~~v~--D~~~~---e------~ergiTi~~~~~~~-------~~~~ 118 (639)
...+|+|+|..|+||||++..|....-.. ...-.+. |.... + +.-|+.+......- .+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35789999999999999999987642111 0111111 21110 0 11122222111000 1246
Q ss_pred ceEEEEeCCCCCCchHHHHH---HHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 119 NELNMVDTPGHADFGGEVER---VVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~---~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
+.+.||||||.......... .+. .....+||+++..+.... ..+++..... .+.-+++||+|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl-~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDL-DEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHH-HHHHHHHHhh-CCeEEEEecCcCc
Confidence 78999999997543322111 111 123568889987653322 2334443333 3567899999973
No 405
>PRK12288 GTPase RsgA; Reviewed
Probab=97.65 E-value=6.1e-05 Score=80.61 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=40.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
.++|+|.+|+|||||+|+|+........ .+ +....+-|.+|.......+..+ ..||||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~--~i--s~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVG--DV--SDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeec--cc--cCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4899999999999999999976322110 01 1112233445555554554322 359999999887
No 406
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.63 E-value=0.00026 Score=75.10 Aligned_cols=81 Identities=21% Similarity=0.152 Sum_probs=63.1
Q ss_pred cceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-----------CchhHHHHHHHHHH--
Q 006610 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK-- 169 (639)
Q Consensus 103 rgiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-----------~~~qt~~~l~~~~~-- 169 (639)
|..|+......+.+++..+.+||++|+..+...|..++..++++|+|||..+- -+..+...++.+..
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 34455556667888899999999999999999999999999999999998752 12334444444433
Q ss_pred --cCCCcEEEEcCCCC
Q 006610 170 --YGLRPILLLNKVDR 183 (639)
Q Consensus 170 --~~lp~IvviNKiD~ 183 (639)
.+.|+++++||.|+
T Consensus 225 ~~~~~pill~~NK~D~ 240 (317)
T cd00066 225 WFANTSIILFLNKKDL 240 (317)
T ss_pred cccCCCEEEEccChHH
Confidence 47899999999995
No 407
>PRK00098 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.00015 Score=76.18 Aligned_cols=84 Identities=31% Similarity=0.437 Sum_probs=59.0
Q ss_pred HHhhccEEEEEEeCCCCCc--hhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 139 VVGMVEGAILVVDAGEGPL--AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~--~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+..+|.+++|+|+.+... ....+++..+...++|+++|+||+|+.. +... ..+..+.+..++ +|+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~----~~~~~~~~~~~g-------~~v 144 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEE----ARELLALYRAIG-------YDV 144 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHH----HHHHHHHHHHCC-------CeE
Confidence 4688999999999975432 2224566667788999999999999852 2211 222233333333 579
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
+++||+++. |+++|++.+
T Consensus 145 ~~vSA~~g~--------------gi~~L~~~l 162 (298)
T PRK00098 145 LELSAKEGE--------------GLDELKPLL 162 (298)
T ss_pred EEEeCCCCc--------------cHHHHHhhc
Confidence 999999998 999998876
No 408
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.61 E-value=0.00016 Score=75.13 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=39.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..+++++|.+|+|||||+|+|+.... .......|+|....... . +..+.|+||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~-----------~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKV-----------AKVGNRPGVTKGQQWIK--L-SDGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-----------cccCCCCCeecceEEEE--e-CCCEEEEECCCc
Confidence 46899999999999999999986521 12223456666544333 3 246899999997
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.60 E-value=0.00042 Score=60.54 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=54.7
Q ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 63 VAVIA-HVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 63 IaIiG-h~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
|++.| ..|+||||+.-.|............+.|.++. +.+.|+|+|+..+. ....++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~-------------------~d~viiD~p~~~~~--~~~~~l~ 60 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-------------------YDYIIIDTPPSLGL--LTRNALA 60 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-------------------CCEEEEeCcCCCCH--HHHHHHH
Confidence 56677 57899999988887653221112222232221 67999999997543 4558899
Q ss_pred hccEEEEEEeCCCCCchhHHHHHH
Q 006610 142 MVEGAILVVDAGEGPLAQTKFVLA 165 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~~l~ 165 (639)
.+|.+++++++...-......+++
T Consensus 61 ~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 61 AADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HCCEEEEeccCCHHHHHHHHHHHH
Confidence 999999999987554455555544
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00031 Score=75.40 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=65.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--cccc---cccc------ccceeEeeeeEE---------Ee-ecC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSI---SLER------ERGITIASKVTG---------IS-WRE 118 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~---~~e~------ergiTi~~~~~~---------~~-~~~ 118 (639)
.+.|+|+|+.|+||||++..|............+ .|.. ..++ .-|+.+...... +. ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5789999999999999999997543211111000 1111 0111 112222211100 00 114
Q ss_pred ceEEEEeCCCCCCc----hHHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 119 NELNMVDTPGHADF----GGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~dF----~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
+.+.||||||.... ..+..+.+.. .|-++||+||+.+.. ....+++.....++ -=++++|+|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~i-dglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCC-CEEEEEcccCC
Confidence 68999999997543 3344444433 367899999864322 22333333333222 24779999974
No 411
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=7.7e-05 Score=76.99 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
+..+++|++|+|||||+|+|+....... ..+ +....+-|.+|..+....+... =.||||||...|.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t--~eI--S~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKT--GEI--SEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhh--hhh--cccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 4789999999999999999986432111 011 2223344566666666666433 4789999998873
No 412
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.56 E-value=0.00012 Score=74.65 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=41.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
..++++|++|+|||||+|+|+........ .+ +....+-+.+|.......+ . ...|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~--~i--~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVN--DI--SSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccc--ce--eccCCCCCCcCCceEEEEc--C--CcEEEeCCCcccc
Confidence 47899999999999999999976321110 00 1112233446666555554 2 2489999998776
No 413
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.55 E-value=0.00015 Score=75.78 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=41.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d 131 (639)
..+++++|.+|+|||||+|+|++... .......|+|..... +.. +..+.|+||||...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~-----------~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKI-----------AKTGNRPGVTKAQQW--IKL-GKGLELLDTPGILW 178 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc-----------cccCCCCCeEEEEEE--EEe-CCcEEEEECCCcCC
Confidence 46899999999999999999997521 122234577766543 222 35799999999643
No 414
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.55 E-value=0.00064 Score=72.75 Aligned_cols=140 Identities=19% Similarity=0.187 Sum_probs=74.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------Ccccccccccccc--------ccceeEeeeeEEEe--------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------PHERAMDSISLER--------ERGITIASKVTGIS-------- 115 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------~~~~v~D~~~~e~--------ergiTi~~~~~~~~-------- 115 (639)
+++-..|.|..|+|||||+++|+....... ..+.-.|..-... +.-+.+......+.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 356788999999999999999997643210 0011112111111 01111111111111
Q ss_pred -------ecCceEEEEeCCCCCCchHHHHHHH-------hhccEEEEEEeCCCCCchh--------------------HH
Q 006610 116 -------WRENELNMVDTPGHADFGGEVERVV-------GMVEGAILVVDAGEGPLAQ--------------------TK 161 (639)
Q Consensus 116 -------~~~~~i~iIDTPGh~dF~~ev~~~l-------~~aD~allVVDa~~g~~~q--------------------t~ 161 (639)
-......+|.|.|.++...-+.... -..|++|.||||....... ..
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHET 162 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccc
Confidence 0135788999999998655443321 2458899999997532100 00
Q ss_pred HHHHH-HHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 006610 162 FVLAK-ALKYGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (639)
Q Consensus 162 ~~l~~-~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~ 200 (639)
.+-.. ..+....=++++||+|+. +.+.+.++.+.+.+
T Consensus 163 ~~~~~~~~Qi~~AD~IvlnK~Dl~--~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 163 PLEELFEDQLACADLVILNKADLL--DAAGLARVRAEIAA 200 (341)
T ss_pred hHHHHHHHHHHhCCEEEEeccccC--CHHHHHHHHHHHHH
Confidence 00001 123334468999999985 44444444444433
No 415
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.53 E-value=0.00058 Score=73.10 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=64.4
Q ss_pred cceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-----------CchhHHHHHHHHHH--
Q 006610 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK-- 169 (639)
Q Consensus 103 rgiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-----------~~~qt~~~l~~~~~-- 169 (639)
|-.|+......+.+++..+.+||..|+..+...|..++..++++|+|||..+- -...+..+++.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 34455566677888899999999999999999999999999999999998752 23444555555543
Q ss_pred --cCCCcEEEEcCCCCC
Q 006610 170 --YGLRPILLLNKVDRP 184 (639)
Q Consensus 170 --~~lp~IvviNKiD~~ 184 (639)
.+.|+++++||.|..
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 378999999999963
No 416
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.53 E-value=0.0007 Score=71.72 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=70.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCC-------CCccccccccccccc--cceeEeeeeEEEeec------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD-------IPHERAMDSISLERE--RGITIASKVTGISWR------------ 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------~~~~~v~D~~~~e~e--rgiTi~~~~~~~~~~------------ 117 (639)
+++-..|.|..|||||||+++|+...... ...+.-.|..-.+.. .-.++......+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46778999999999999999999764311 011111222222111 112222222222211
Q ss_pred -------CceEEEEeCCCCCCchHHHHHHHh--------hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 118 -------ENELNMVDTPGHADFGGEVERVVG--------MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 118 -------~~~i~iIDTPGh~dF~~ev~~~l~--------~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
.....+|.|.|.++-..-....+. ..|+++.||||.......... -....+....=++++||+|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~IvlnK~D 161 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLTKTD 161 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCEEEEeccc
Confidence 246789999999885443333211 248899999997643221111 1111233345589999999
Q ss_pred CCC
Q 006610 183 RPA 185 (639)
Q Consensus 183 ~~~ 185 (639)
+..
T Consensus 162 l~~ 164 (318)
T PRK11537 162 VAG 164 (318)
T ss_pred cCC
Confidence 864
No 417
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.52 E-value=0.00026 Score=71.20 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc-CCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC-GADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG---- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~-g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~---- 133 (639)
++..|+|+|..++|||||+|+|++.. +.. +++. .....+||-+....... ..+..+.++||||..+..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~-----~~~~-~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~ 78 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFD-----VMDT-SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEF 78 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeE-----ecCC-CCCCccceEEEeccccC-CCcceEEEEecCCcCccccCch
Confidence 46789999999999999999999872 100 0001 01122344433221111 246789999999975532
Q ss_pred --HHHHHHHhh--ccEEEEEEeCC
Q 006610 134 --GEVERVVGM--VEGAILVVDAG 153 (639)
Q Consensus 134 --~ev~~~l~~--aD~allVVDa~ 153 (639)
.....++.. +|.+|+.++..
T Consensus 79 ~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 79 EDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred hhhhHHHHHHHHHhCEEEEeccCc
Confidence 223445555 89888888864
No 418
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.51 E-value=0.0012 Score=71.78 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=89.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC----C--------------CCC-c-------cccccccc-------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG----A--------------DIP-H-------ERAMDSIS------------- 98 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g----~--------------~~~-~-------~~v~D~~~------------- 98 (639)
++.++|+++|...+||||.++.+....- . +.. + .+-.|-..
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 4678999999999999999998875421 0 000 0 01111111
Q ss_pred ---cccccceeEeeeeEEEeecC---ceEEEEeCCCCC-----C--------chHHHHHHHhhccEEEEEEe--CCCCCc
Q 006610 99 ---LERERGITIASKVTGISWRE---NELNMVDTPGHA-----D--------FGGEVERVVGMVEGAILVVD--AGEGPL 157 (639)
Q Consensus 99 ---~e~ergiTi~~~~~~~~~~~---~~i~iIDTPGh~-----d--------F~~ev~~~l~~aD~allVVD--a~~g~~ 157 (639)
..-..|.|+.....++..++ .+..++|.||.. | .......++..-.++||||- +.+...
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 12244778888888887765 478999999943 2 23444566777788998874 122222
Q ss_pred hhHHHHHHHHHHcCCCcEEEEcCCCCCC---CCHHHHHHHHH
Q 006610 158 AQTKFVLAKALKYGLRPILLLNKVDRPA---VSEERCDEVES 196 (639)
Q Consensus 158 ~qt~~~l~~~~~~~lp~IvviNKiD~~~---~~~~~~~~v~~ 196 (639)
.....+..++.-.|...|+|++|+|+.. ++|+++..+++
T Consensus 466 SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 2333456677778999999999999854 56766555543
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.00048 Score=75.59 Aligned_cols=122 Identities=19% Similarity=0.145 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC-CCCCcccc--ccccc---------cccccceeEeeeeE-----E--------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG-ADIPHERA--MDSIS---------LERERGITIASKVT-----G-------- 113 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g-~~~~~~~v--~D~~~---------~e~ergiTi~~~~~-----~-------- 113 (639)
+...|.++|++|+||||++-.|..... .......+ .|... ....-|+.+..... .
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 356899999999999999887765421 00011001 11000 01112333222110 0
Q ss_pred EeecCceEEEEeCCCCCCchH----HHHHH--HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCC
Q 006610 114 ISWRENELNMVDTPGHADFGG----EVERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (639)
Q Consensus 114 ~~~~~~~i~iIDTPGh~dF~~----ev~~~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (639)
....++.+.||||||...... +.... ....|.++||+|+..| .......+... ..+++ =+++||+|.
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDG 251 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccC
Confidence 011357899999999643322 22221 1236889999999754 22222222222 12333 577999995
No 420
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.49 E-value=0.00034 Score=73.15 Aligned_cols=84 Identities=26% Similarity=0.283 Sum_probs=58.7
Q ss_pred HHhhccEEEEEEeCCCCC-c-hhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 139 VVGMVEGAILVVDAGEGP-L-AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~-~-~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+..+|.+++|+|+.++. . ....+++..+...++|+++|+||+|+... .. ... ....+... .+|+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~--~~---~~~-~~~~~~~~-------g~~v 141 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD--EE---EEL-ELVEALAL-------GYPV 141 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh--HH---HHH-HHHHHHhC-------CCeE
Confidence 467899999999998775 3 23345666677789999999999998532 11 111 11112222 2579
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
+++||+++. |+++|++.|.
T Consensus 142 ~~vSA~~g~--------------gi~~L~~~L~ 160 (287)
T cd01854 142 LAVSAKTGE--------------GLDELREYLK 160 (287)
T ss_pred EEEECCCCc--------------cHHHHHhhhc
Confidence 999999998 9998888763
No 421
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.00032 Score=69.49 Aligned_cols=63 Identities=33% Similarity=0.418 Sum_probs=49.9
Q ss_pred CceEEEEeCC-CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcC-CCcEEEEcCCCC
Q 006610 118 ENELNMVDTP-GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG-LRPILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTP-Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~-lp~IvviNKiD~ 183 (639)
.+.+.++||= |.+-|+. .....+|.+|+|+|.+..-....+++-+.+.+.+ .++.+|+||+|.
T Consensus 133 ~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred cCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 3678889984 6666653 3567899999999987766677778888889999 567789999995
No 422
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.47 E-value=0.00021 Score=67.44 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=37.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
...+++++|.+++|||||+++|+.... .......|.|.... +...+..+.||||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-----------~~~~~~~~~t~~~~---~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-----------ASTSPSPGYTKGEQ---LVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-----------cccCCCCCeeeeeE---EEEcCCCEEEEECcCC
Confidence 356789999999999999999985421 11122234443322 2122457999999994
No 423
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.46 E-value=0.00019 Score=74.98 Aligned_cols=65 Identities=25% Similarity=0.346 Sum_probs=41.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
..++++|++|+|||||+|.|+........ .+ +....+-+++|.......+.. ...++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g--~v--~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG--EI--SEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc--ce--eccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 57999999999999999999976432111 01 111123334555544444322 2479999999887
No 424
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00055 Score=75.34 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=67.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC--CCCCcccccccccc-----------ccccceeEeeeeEEE-------eecCc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG--ADIPHERAMDSISL-----------ERERGITIASKVTGI-------SWREN 119 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g--~~~~~~~v~D~~~~-----------e~ergiTi~~~~~~~-------~~~~~ 119 (639)
.+.|+|+|+.|+||||++-.|....- .......+.+.+.. .+..++.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999888865421 11111111111110 011222221111100 12367
Q ss_pred eEEEEeCCCCCCch----HHHHHHHhh---ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 120 ELNMVDTPGHADFG----GEVERVVGM---VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 120 ~i~iIDTPGh~dF~----~ev~~~l~~---aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.+.||||||+..+. .+....+.. -+-+.||++++.+. .....+++.....++ -=++++|+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 89999999986553 334444442 23578899987542 233344444444343 25889999973
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=97.44 E-value=0.00077 Score=74.02 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=62.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCC-CCcccc--cccc------c---cccccceeEeeeeE-----E--------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD-IPHERA--MDSI------S---LERERGITIASKVT-----G-------- 113 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-~~~~~v--~D~~------~---~e~ergiTi~~~~~-----~-------- 113 (639)
....|.++|+.|+||||++-.|....... .....+ .|.. . .....|+.+..... .
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35689999999999999777776432111 110000 0100 0 01222333322110 0
Q ss_pred EeecCceEEEEeCCCCCCc----hHHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCC
Q 006610 114 ISWRENELNMVDTPGHADF----GGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (639)
Q Consensus 114 ~~~~~~~i~iIDTPGh~dF----~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (639)
....++.+.||||||.... ..+...... ..|.+++|+|+..| .......+...+ .+++ -+++||+|.
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDG 252 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccC
Confidence 0113578999999995432 222222222 45788999998654 122222222221 3443 578899995
No 426
>PRK12288 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.00077 Score=72.19 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=59.6
Q ss_pred HhhccEEEEEEeCCCCCchhH-HHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEe
Q 006610 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~ 218 (639)
...+|.+++|.+......... ..++..+...++|+++|+||+|+.... . .+...+..+.+..++ +++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~--~-~~~~~~~~~~y~~~g-------~~v~~ 187 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE--G-RAFVNEQLDIYRNIG-------YRVLM 187 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH--H-HHHHHHHHHHHHhCC-------CeEEE
Confidence 456899999998765544332 345566777899999999999995321 1 111222333333333 57999
Q ss_pred cccccCCCCCcccCCCcccccchHHHHHHHHh
Q 006610 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (639)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~ 250 (639)
+||+++. |+++|++.|..
T Consensus 188 vSA~tg~--------------GideL~~~L~~ 205 (347)
T PRK12288 188 VSSHTGE--------------GLEELEAALTG 205 (347)
T ss_pred EeCCCCc--------------CHHHHHHHHhh
Confidence 9999998 99999998854
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00035 Score=74.70 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=62.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--ccccc---------cccccceeEeeeeE--E-------Ee-ec
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVT--G-------IS-WR 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~e~ergiTi~~~~~--~-------~~-~~ 117 (639)
+.+.|+++|+.|+||||++..|............+ .|... ....-++.+..... . +. ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 46789999999999999999987653211111000 11100 01111222211100 0 00 03
Q ss_pred CceEEEEeCCCCCCch----HHHHHHHhhc--cEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFG----GEVERVVGMV--EGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~----~ev~~~l~~a--D~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (639)
++.+.||||||..... .+.......+ |.++||+++.... .+....++... .++ --++++|+|..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~-~d~~~i~~~f~--~l~i~glI~TKLDET 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS-ADVMTILPKLA--EIPIDGFIITKMDET 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH-HHHHHHHHhcC--cCCCCEEEEEcccCC
Confidence 5789999999975433 3333333332 5667888774321 12222222222 233 25779999974
No 428
>PRK12289 GTPase RsgA; Reviewed
Probab=97.42 E-value=0.00016 Score=77.49 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=39.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
.++|+|++|+|||||+|+|+........ .+ +....+-|.+|.......+ .+ ...|+||||...|
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~--~v--s~~~~rGrHTT~~~~l~~l--~~-g~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG--KV--SGKLGRGRHTTRHVELFEL--PN-GGLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc--cc--cCCCCCCCCcCceeEEEEC--CC-CcEEEeCCCcccc
Confidence 4899999999999999999965322110 01 1112233345555433333 21 2379999998776
No 429
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.39 E-value=0.00044 Score=66.20 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=52.9
Q ss_pred cCceEEEEeCCCCCCchHHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
.++.+.|+|||+... ......+ ..+|.+|+|+.+.......+...++.+.+.+++++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 578899999999743 3333344 58999999999887777888899999999999875 789999853
No 430
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.38 E-value=0.0016 Score=57.33 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=66.2
Q ss_pred eeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCC-------ceeeeccCC--CCc
Q 006610 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGT-------GMVLIDSAG--AGD 334 (639)
Q Consensus 264 ~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~-------~~~~v~~a~--aGd 334 (639)
++.|.....+++.|.++..-|++|+|+.||.|.+....+ ....||+.|+...++ +...++++. +|=
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~G-----pi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gv 76 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNG-----PIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGV 76 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCC-----CceEEEeEecCCCCchhhccccccceeeEEecCCCc
Confidence 456778888999999999999999999999999876532 245799999998885 234566666 777
Q ss_pred eEEecCCCCCCcCCeeee
Q 006610 335 IISVAGMTKPSIGHTVAN 352 (639)
Q Consensus 335 Iv~i~gl~~~~~Gdtl~~ 352 (639)
-+.+.||+++..|+.|.-
T Consensus 77 kI~~~gL~~v~aG~~~~v 94 (110)
T cd03703 77 KILAPDLEKAIAGSPLLV 94 (110)
T ss_pred EEEeCCCccccCCCEEEE
Confidence 777789998888887643
No 431
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.36 E-value=0.001 Score=57.48 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=63.3
Q ss_pred eeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCC
Q 006610 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343 (639)
Q Consensus 264 ~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 343 (639)
++.|.....++..|.++..-|.+|+|++||.+.... ...||..++...| ..+.+|.|++.+.+.|+.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~---------~~GkVr~~~d~~g---~~v~~a~Ps~~v~i~g~~~ 69 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG---------TYGKIRTMVDENG---KALLEAGPSTPVEILGLKD 69 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC---------ccceEEEEECCCC---CCccccCCCCCEEEeeecC
Confidence 467888888999999999999999999999998753 3568999988776 4789999999999999875
Q ss_pred -CCcCCeee
Q 006610 344 -PSIGHTVA 351 (639)
Q Consensus 344 -~~~Gdtl~ 351 (639)
...||.+-
T Consensus 70 ~p~aGd~~~ 78 (95)
T cd03701 70 VPKAGDGVL 78 (95)
T ss_pred CccCCCEEE
Confidence 45677653
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0016 Score=70.63 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=67.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC----CCCcc--ccccccc---------cccccceeEeeeeEE-------Eee
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHE--RAMDSIS---------LERERGITIASKVTG-------ISW 116 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~--~v~D~~~---------~e~ergiTi~~~~~~-------~~~ 116 (639)
..+.|+++|+.|+||||.+..|...... ....- -..|... ....-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999888754210 00000 0011100 001112322211110 012
Q ss_pred cCceEEEEeCCCCCCch----HHHHHHHhhc--c-EEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFG----GEVERVVGMV--E-GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~----~ev~~~l~~a--D-~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.++.+.||||||..... .+....+..+ + -.+||+||+.+.... .+++......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 47899999999965422 3555555544 3 589999998873322 23444333222 235779999974
No 433
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0012 Score=65.22 Aligned_cols=138 Identities=19% Similarity=0.265 Sum_probs=85.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH---HHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---EVE 137 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---ev~ 137 (639)
++|.++|+--+||||+-......... . +..-+|....+|.+.-..+ -..+.+||-||+.+|.. ..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP---n----eTlflESTski~~d~is~s----finf~v~dfPGQ~~~Fd~s~D~e 96 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP---N----ETLFLESTSKITRDHISNS----FINFQVWDFPGQMDFFDPSFDYE 96 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC---C----ceeEeeccCcccHhhhhhh----hcceEEeecCCccccCCCccCHH
Confidence 35999999999999988776654211 0 1122233333332211111 14688999999988643 456
Q ss_pred HHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHcCC----CcEEEEcCCCCCCCCH--HHHHHHHHHHHHHHHhcCCCC
Q 006610 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGL----RPILLLNKVDRPAVSE--ERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~~l----p~IvviNKiD~~~~~~--~~~~~v~~~i~~l~~~~g~~~ 209 (639)
...+.+.+.|+||||.+..+ +.++-++..++.+++ .+=|++-|+|-...+. +....+..+..+-+...|...
T Consensus 97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~ 175 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK 175 (347)
T ss_pred HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence 78899999999999987654 445556666666654 3458999999764332 222234444445555555544
No 434
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.27 E-value=0.00038 Score=73.89 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=42.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~ 130 (639)
..++.++|-+++|||||+|+|++... ....+.+|+|-......+. ..+.|+||||..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~-----------~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKV-----------AKTSNRPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccc-----------eeeCCCCceecceEEEEcC---CCeEEecCCCcC
Confidence 35699999999999999999998743 2334455887766555543 459999999953
No 435
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00061 Score=74.40 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=64.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc----CCCCCccccccccc---------cccccceeEeeeeEE-------EeecC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSIS---------LERERGITIASKVTG-------ISWRE 118 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~~---------~e~ergiTi~~~~~~-------~~~~~ 118 (639)
....|+++|..|+||||++..|.... +.....-...|... ..+-.|+........ ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34689999999999999999887652 11110000001100 011123332211111 12346
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhh------ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 119 NELNMVDTPGHADFGGEVERVVGM------VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~------aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
+.+.+|||+|..........-+.. .+-.+||+||+.+... ...++......++ -=++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~-~~~~~~~f~~~~~-~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT-LDEVISAYQGHGI-HGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH-HHHHHHHhcCCCC-CEEEEEeeeCC
Confidence 789999999976543333222222 2347899999854221 1223332222222 24778999974
No 436
>PRK01889 GTPase RsgA; Reviewed
Probab=97.24 E-value=0.0014 Score=70.57 Aligned_cols=82 Identities=24% Similarity=0.232 Sum_probs=60.6
Q ss_pred HhhccEEEEEEeCCCCCch-hHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEe
Q 006610 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~ 218 (639)
...+|.+++|+++...+.. ....++..+...++++++|+||+|+... . .+..+.+..+ . ..+|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~---~~~~~~~~~~--~-------~g~~Vi~ 176 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-A---EEKIAEVEAL--A-------PGVPVLA 176 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-H---HHHHHHHHHh--C-------CCCcEEE
Confidence 4668999999999776666 5567888889999999999999999532 1 1122233222 1 1357999
Q ss_pred cccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
+|+++|. |++.|.+.|
T Consensus 177 vSa~~g~--------------gl~~L~~~L 192 (356)
T PRK01889 177 VSALDGE--------------GLDVLAAWL 192 (356)
T ss_pred EECCCCc--------------cHHHHHHHh
Confidence 9999998 888888876
No 437
>PRK13796 GTPase YqeH; Provisional
Probab=97.24 E-value=0.00049 Score=74.42 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=41.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~ 130 (639)
++++++|.+|+|||||+|+|+....... +.......+|+|.......+ . ....|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~------~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEK------DVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCcc------ceEEecCCCCccceeEEEEc--C-CCcEEEECCCcc
Confidence 5899999999999999999997632110 11123455788876544333 2 235899999974
No 438
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.21 E-value=0.00094 Score=69.32 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-----------------CceEE
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-----------------ENELN 122 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-----------------~~~i~ 122 (639)
...++|+|-+++|||||+++|+...- ..+.-+-.||+.....+... .-.++
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a------------~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~ 87 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKA------------GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLT 87 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCC------------CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEE
Confidence 46899999999999999999997632 22233344444444433321 23699
Q ss_pred EEeCCCCCC-------chHHHHHHHhhccEEEEEEeCCC
Q 006610 123 MVDTPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 123 iIDTPGh~d-------F~~ev~~~l~~aD~allVVDa~~ 154 (639)
+.|+.|... ++.....-+|.+|+++-||++.+
T Consensus 88 v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 88 VYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred EEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 999999542 55666778899999999999865
No 439
>PRK13796 GTPase YqeH; Provisional
Probab=97.20 E-value=0.0016 Score=70.49 Aligned_cols=100 Identities=22% Similarity=0.134 Sum_probs=62.0
Q ss_pred CchHHHHHHHhhcc-EEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 131 DFGGEVERVVGMVE-GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 131 dF~~ev~~~l~~aD-~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
||.. +...+...| .+++|||+.+-.......+.+.. .+.|+++|+||+|+...+. ...++.+.+...+...|...
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHHHhcCCCc
Confidence 4544 444555555 88999999875433322222222 2789999999999954211 11223333334444445421
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..++.+||++|+ |+++|++.|.++.
T Consensus 134 ----~~v~~vSAk~g~--------------gI~eL~~~I~~~~ 158 (365)
T PRK13796 134 ----VDVVLISAQKGH--------------GIDELLEAIEKYR 158 (365)
T ss_pred ----CcEEEEECCCCC--------------CHHHHHHHHHHhc
Confidence 148999999999 9999999997764
No 440
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.20 E-value=0.0011 Score=64.27 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=62.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH-HcCCC-------CCccccccccccccccceeE---eeeeEEEe--------------e
Q 006610 62 NVAVIAHVDHGKTTLMDRLLR-QCGAD-------IPHERAMDSISLERERGITI---ASKVTGIS--------------W 116 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~-~~g~~-------~~~~~v~D~~~~e~ergiTi---~~~~~~~~--------------~ 116 (639)
-+.|.|..|||||||+++|+. ..... ...+.-.|..-.+ +.|+++ ......+. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~-~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQ-EDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHH-TTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhc-ccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 468999999999999999995 32211 0011111221111 112221 11111111 1
Q ss_pred c--CceEEEEeCCCCCCchHHH-----HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 117 R--ENELNMVDTPGHADFGGEV-----ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 117 ~--~~~i~iIDTPGh~dF~~ev-----~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
. .....||.+.|..+...-+ ....-..+.+|.||||..-...... .-....+....-++++||+|+.
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~-~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENI-PELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTH-CHHHHHHHCT-SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccc-hhhhhhcchhcCEEEEeccccC
Confidence 1 3578999999977654331 1112335889999999653111111 1112234455669999999984
No 441
>PHA02518 ParA-like protein; Provisional
Probab=97.17 E-value=0.0031 Score=62.26 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=43.8
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH---c--CCCc-EEEEcCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK---Y--GLRP-ILLLNKVDR 183 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~---~--~lp~-IvviNKiD~ 183 (639)
..+.+.||||||.. ......++..+|.+|+++.+..--...+..+++.+.+ . +++. .++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 35789999999974 4557789999999999999865433334444333332 2 4554 466777664
No 442
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0024 Score=65.99 Aligned_cols=125 Identities=15% Similarity=0.174 Sum_probs=65.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcc--cccccc---------ccccccceeEeeeeEE------E----eec
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHE--RAMDSI---------SLERERGITIASKVTG------I----SWR 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~--~v~D~~---------~~e~ergiTi~~~~~~------~----~~~ 117 (639)
+..+++++|..|+|||||+..|........... ...|.. .....-++.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 346899999999999999998876532110000 001111 0000112222111000 0 112
Q ss_pred CceEEEEeCCCCCCch----HHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC
Q 006610 118 ENELNMVDTPGHADFG----GEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~----~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (639)
++.+.||||||..... .+....++. .|-++||+||+.... +...+++.....++ -=++++|+|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~-~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCC-CEEEEEeecCCC
Confidence 5789999999976432 333333333 356899999875321 22223333332222 247899999743
No 443
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.14 E-value=0.0026 Score=53.80 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=53.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH-HHHHHh
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE-VERVVG 141 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e-v~~~l~ 141 (639)
+++.|..|+||||++..|...... .|..+ ..+. .+.++|+|+..+.... ....+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------------~g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~ 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------------RGKRV----LLID----DYVLIDTPPGLGLLVLLCLLALL 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------------CCCeE----EEEC----CEEEEeCCCCccchhhhhhhhhh
Confidence 678899999999999999876311 11111 1111 7999999997764321 245778
Q ss_pred hccEEEEEEeCCCCCchhHHHH
Q 006610 142 MVEGAILVVDAGEGPLAQTKFV 163 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~~ 163 (639)
.+|.++++++............
T Consensus 58 ~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 58 AADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hCCEEEEecCCchhhHHHHHHH
Confidence 8999999999876655555544
No 444
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.14 E-value=0.0014 Score=66.32 Aligned_cols=64 Identities=8% Similarity=0.088 Sum_probs=46.3
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHH------HcCCCcEEEEcCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL------KYGLRPILLLNKVD 182 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~------~~~lp~IvviNKiD 182 (639)
+++.+.||||||+.+ .....++..+|.+|+.+.+..--...+...+.... ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999875 45677899999999988875443334444443332 23678889999997
No 445
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0015 Score=70.93 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC-CCCCcccc--ccccc------cc---cccceeEeeee------EEEeecCceEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG-ADIPHERA--MDSIS------LE---RERGITIASKV------TGISWRENELN 122 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g-~~~~~~~v--~D~~~------~e---~ergiTi~~~~------~~~~~~~~~i~ 122 (639)
..++++|+.|+||||++..|..... .......+ .|... .. ...|+...... ..+.-.++.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 4689999999999999999985421 00000001 11100 00 11122221100 00011367899
Q ss_pred EEeCCCCCCch----HHHHHHHhhc-----cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 123 MVDTPGHADFG----GEVERVVGMV-----EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 123 iIDTPGh~dF~----~ev~~~l~~a-----D~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
||||||..... .+....++.+ .-.+||+||+.+... ....++.....++ -=++++|+|-.
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~~-~glIlTKLDEt 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLNY-RRILLTKLDEA 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCCC-CEEEEEcccCC
Confidence 99999975322 2333333332 257899999876322 2333333333333 25778999974
No 446
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.10 E-value=0.0026 Score=62.81 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=51.9
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
.+.+.|||||.... ..+.......+|.+|+|+++...-........+.+.+.+.+++ +|+||.|..
T Consensus 127 ~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 57899999997322 2233445678999999999987777888888888888898864 799999964
No 447
>PRK00098 GTPase RsgA; Reviewed
Probab=97.10 E-value=0.00078 Score=70.80 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
..++++|++|+|||||+|+|+....... ..+.. ...+-+.+|.......+ . ....|+||||...|
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~--g~v~~--~~~~G~htT~~~~~~~~--~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT--GEISE--ALGRGKHTTTHVELYDL--P-GGGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC--cceec--cCCCCCcccccEEEEEc--C-CCcEEEECCCcCcc
Confidence 4699999999999999999986532111 01100 01112223433333222 2 23589999998764
No 448
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.07 E-value=0.0037 Score=63.51 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=49.6
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (639)
.+.+.|||||+..+ .....++..+|.+|+|+++.......+...++.+...+++. .+++|+.+.
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCc
Confidence 57899999998654 35667888999999999987555555566666666777775 489999986
No 449
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.04 E-value=0.0071 Score=65.00 Aligned_cols=168 Identities=21% Similarity=0.309 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCC-----CccccccccccccccceeEeeeeE--------EEeec---CceEEEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADI-----PHERAMDSISLERERGITIASKVT--------GISWR---ENELNMV 124 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~-----~~~~v~D~~~~e~ergiTi~~~~~--------~~~~~---~~~i~iI 124 (639)
.-|+++|++-.|||||+.++....-... ...+..|-.++.-. |-||...-. .+..+ ..++.+|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 4699999999999999999987654211 12344555554332 334332211 12222 3578899
Q ss_pred eCCCCC--------C-----------------chHHHHHHHhhc------cEEEEEEeCCCC------CchhHHHHHHHH
Q 006610 125 DTPGHA--------D-----------------FGGEVERVVGMV------EGAILVVDAGEG------PLAQTKFVLAKA 167 (639)
Q Consensus 125 DTPGh~--------d-----------------F~~ev~~~l~~a------D~allVVDa~~g------~~~qt~~~l~~~ 167 (639)
||-|+. + |...++-.-+.+ =|+++--|.+=+ ......++...+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999842 1 332222222211 134444443321 123456788999
Q ss_pred HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHH
Q 006610 168 LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDA 247 (639)
Q Consensus 168 ~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~ 247 (639)
++.|.|+++++|-.+- .+ ....++.+++.+ ++ ++||+++++.+-. ...+..+|+.
T Consensus 177 k~igKPFvillNs~~P--~s-~et~~L~~eL~e---kY-------~vpVlpvnc~~l~------------~~DI~~Il~~ 231 (492)
T PF09547_consen 177 KEIGKPFVILLNSTKP--YS-EETQELAEELEE---KY-------DVPVLPVNCEQLR------------EEDITRILEE 231 (492)
T ss_pred HHhCCCEEEEEeCCCC--CC-HHHHHHHHHHHH---Hh-------CCcEEEeehHHcC------------HHHHHHHHHH
Confidence 9999999999998773 12 233334444322 22 3677777765432 1156666666
Q ss_pred HHhhCCC
Q 006610 248 IIRHVPP 254 (639)
Q Consensus 248 I~~~lP~ 254 (639)
++-.+|-
T Consensus 232 vLyEFPV 238 (492)
T PF09547_consen 232 VLYEFPV 238 (492)
T ss_pred HHhcCCc
Confidence 6655553
No 450
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.0025 Score=70.75 Aligned_cols=167 Identities=22% Similarity=0.253 Sum_probs=83.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc----CCCCCcccccccc--------c-cccccceeEeeeeEE-------EeecCc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSI--------S-LERERGITIASKVTG-------ISWREN 119 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~--------~-~e~ergiTi~~~~~~-------~~~~~~ 119 (639)
...|+++|+.|+||||++..|.... |.....--..|.. . ..+..|+.+...... ....++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 4679999999999999999998643 1111100001111 0 012223332211111 122466
Q ss_pred eEEEEeCCCCCCchHHHHHHHhhc-cE-----EEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHH
Q 006610 120 ELNMVDTPGHADFGGEVERVVGMV-EG-----AILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDE 193 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~a-D~-----allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~ 193 (639)
.+.+|||+|...........+.+. +. .+||+|+..+. ....++++.....++ --+++||+|-.. ...
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~-~g~IlTKlDet~-~~G---- 408 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGL-AGCILTKLDEAA-SLG---- 408 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCC-CEEEEeCCCCcc-cch----
Confidence 899999999544332222222221 22 68999997653 122223333333333 346789999632 221
Q ss_pred HHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCc-ccccchHHHHHHHHhh
Q 006610 194 VESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPP-ADVRNMSQLLDAIIRH 251 (639)
Q Consensus 194 v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~-~~~~gl~~Lld~I~~~ 251 (639)
.+.++....+ .|+.|++.=.+. |+ ....+-+.|.+.++..
T Consensus 409 ---~~l~i~~~~~-------lPI~yvt~GQ~V--------PeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 409 ---GALDVVIRYK-------LPLHYVSNGQRV--------PEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred ---HHHHHHHHHC-------CCeEEEecCCCC--------hhhhccCCHHHHHHHHhcC
Confidence 2223333332 578887754332 11 1112456677777654
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0035 Score=72.95 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=62.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc----CCCCCccccccccc---cc------cccceeEeeeeEE-------EeecCc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSIS---LE------RERGITIASKVTG-------ISWREN 119 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~~---~e------~ergiTi~~~~~~-------~~~~~~ 119 (639)
...|+++|+.|+||||++..|.... |.....--..|... .| ...|+.+...... -...++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3579999999999999999988543 21010000011110 00 1112222111000 012467
Q ss_pred eEEEEeCCCCCCchHHHHHHHhh------ccEEEEEEeCCCCCchhHHHHHHHHHHc-CCC-cEEEEcCCCCC
Q 006610 120 ELNMVDTPGHADFGGEVERVVGM------VEGAILVVDAGEGPLAQTKFVLAKALKY-GLR-PILLLNKVDRP 184 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~------aD~allVVDa~~g~~~qt~~~l~~~~~~-~lp-~IvviNKiD~~ 184 (639)
.+.||||||......+....+.. -+-.+||+|++.+.. .-.++++..... +++ -=++++|+|-.
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 89999999944333333332322 234799999985321 112233322222 122 34779999974
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.95 E-value=0.0055 Score=66.95 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
..+++|+|+|+.++|||||+++|....|.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 45789999999999999999999988664
No 453
>PRK13695 putative NTPase; Provisional
Probab=96.92 E-value=0.0026 Score=61.23 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=30.4
Q ss_pred hhccEEEEEEe---CCCCCchhHHHHHHHHHHcCCCcEEEEcCC
Q 006610 141 GMVEGAILVVD---AGEGPLAQTKFVLAKALKYGLRPILLLNKV 181 (639)
Q Consensus 141 ~~aD~allVVD---a~~g~~~qt~~~l~~~~~~~lp~IvviNKi 181 (639)
..+|. +++| +.+....+....+..+.+.+.|+|+++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 33444 7889 666666777888888888999999999984
No 454
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.92 E-value=0.011 Score=59.76 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=41.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH--cCCCcEEEEcCCCCC
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK--YGLRPILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~--~~lp~IvviNKiD~~ 184 (639)
+.+.|||||+. +......++..+|.+|+++.+..-...... .+.+.... ...+.-+|+|++|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 47999999995 345677899999999999987532222222 12222221 234466899999863
No 455
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.89 E-value=0.0061 Score=62.19 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=50.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCC-CcEEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGL-RPILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~l-p~IvviNKiD~ 183 (639)
.+.+.|||||+..+ ..+..++..+|.+|+|+.+.......+..+++.+...+. +..+++|+++.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 47899999998754 345678899999999999876666677777777777765 56789999985
No 456
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.87 E-value=0.0034 Score=61.12 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=43.1
Q ss_pred ceEEEEeCCCCCC------chHHHHHHHhhcc---EEEEEEeCCCCC-----chhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 119 NELNMVDTPGHAD------FGGEVERVVGMVE---GAILVVDAGEGP-----LAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~d------F~~ev~~~l~~aD---~allVVDa~~g~-----~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
-.+.++|+||+.+ -.....+.+..-+ ++++++|+.--+ .......+.......+|.|=|++|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 4688999999665 3344445555533 478888874311 1122234444556789999999999986
Q ss_pred C
Q 006610 185 A 185 (639)
Q Consensus 185 ~ 185 (639)
.
T Consensus 178 k 178 (273)
T KOG1534|consen 178 K 178 (273)
T ss_pred h
Confidence 4
No 457
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.86 E-value=0.0055 Score=60.98 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=41.1
Q ss_pred cCceEEEEeCCCCCCchHHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCCc-EEEEcCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRP-ILLLNKVDR 183 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~----~lp~-IvviNKiD~ 183 (639)
+.|.+.||||||......- ...+ +.||.+|++++...--......+++.+.+. +++. .+++||++.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4689999999986532111 0123 489999999987543333334444545443 4443 489999995
No 458
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.85 E-value=0.0026 Score=68.21 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=67.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC--CCC--cccccccccc---cc------ccceeEeeeeEEEe-------ecC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA--DIP--HERAMDSISL---ER------ERGITIASKVTGIS-------WRE 118 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~--~~~--~~~v~D~~~~---e~------ergiTi~~~~~~~~-------~~~ 118 (639)
+.+.|+++|+.|+||||-+-.|...... ... .--.+|+... |+ --|+++......-+ +.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4789999999999999988888766441 100 0001122111 00 11223222221111 236
Q ss_pred ceEEEEeCCCCCCch----HHHHHHHhhc--cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 119 NELNMVDTPGHADFG----GEVERVVGMV--EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~----~ev~~~l~~a--D~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
+.+.||||.|+.-.. .+....++.+ .-+-||++|+.- ...-++++......++. =++++|+|-.
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET 351 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDET 351 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEccccc
Confidence 799999999965443 3444444444 236778888642 22223344444433333 3568999974
No 459
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.73 E-value=0.0018 Score=62.93 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=50.6
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC---cEEEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR---PILLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp---~IvviNKiD~~ 184 (639)
.+.+.|||||+..... +..++..+|.+|+++++..-....+..++..+...+.+ .-+|+||++..
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 3899999999976654 77889999999999998754455666677777777743 36899999863
No 460
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.70 E-value=0.0087 Score=62.07 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=59.5
Q ss_pred ccEEEEEEeCCCCCc--hhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecc
Q 006610 143 VEGAILVVDAGEGPL--AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (639)
Q Consensus 143 aD~allVVDa~~g~~--~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~S 220 (639)
.|-+++|+.+.++.. .+..+.|-.+...|+.+++++||+|+..... ... ++....+..+| ++++++|
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~--~~~--~~~~~~y~~~g-------y~v~~~s 148 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEE--AAV--KELLREYEDIG-------YPVLFVS 148 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchH--HHH--HHHHHHHHhCC-------eeEEEec
Confidence 677889999877644 3445677888899999999999999954322 121 34444555555 5799999
Q ss_pred cccCCCCCcccCCCcccccchHHHHHHH
Q 006610 221 AKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
+++++ +++.|.+.+
T Consensus 149 ~~~~~--------------~~~~l~~~l 162 (301)
T COG1162 149 AKNGD--------------GLEELAELL 162 (301)
T ss_pred CcCcc--------------cHHHHHHHh
Confidence 99998 888888776
No 461
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.69 E-value=0.018 Score=47.99 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred CceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--c
Q 006610 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (639)
Q Consensus 262 p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~ 339 (639)
|-.+.|...+.-.... +..|+|..|+|++|..| . | ....+|.+|.. +.+++++|.+||-||| .
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~----G---~~iG~I~sIe~----~~k~v~~A~~G~eVai~Ie 68 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---D----G---RKIGRIKSIED----NGKNVDEAKKGDEVAISIE 68 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---C----S---SCEEEEEEEEE----TTEEESEEETT-EEEEEEE
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---C----C---EEEEEEEEeEE----CCcCccccCCCCEEEEEEe
Confidence 4555565555444556 78889999999999999 1 1 13566777764 3479999999999987 4
Q ss_pred CCCCCCcCCeee
Q 006610 340 GMTKPSIGHTVA 351 (639)
Q Consensus 340 gl~~~~~Gdtl~ 351 (639)
|..++.-||+|.
T Consensus 69 g~~~i~eGDiLy 80 (81)
T PF14578_consen 69 GPTQIKEGDILY 80 (81)
T ss_dssp T--TB-TT-EEE
T ss_pred CCccCCCCCEEe
Confidence 655777888873
No 462
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.0038 Score=63.03 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=76.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCC-----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHAD----- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~d----- 131 (639)
-..||.-+|..|-|||||++.|........... ....++-..+....+.-. ..+++|+||-|+.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~--------H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~ 112 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPST--------HTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKE 112 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCc--------cCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcc
Confidence 358999999999999999999997654221110 001122222222111111 24789999999765
Q ss_pred --------ch-HHHHH----------HH-----hhccEEEEEEeCC-CCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC
Q 006610 132 --------FG-GEVER----------VV-----GMVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV 186 (639)
Q Consensus 132 --------F~-~ev~~----------~l-----~~aD~allVVDa~-~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~ 186 (639)
|. ...+. .| +...++++.|..+ ++......-.++.+ ..++.+|-+|-|.|. .
T Consensus 113 ~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~L-dskVNIIPvIAKaDt--i 189 (406)
T KOG3859|consen 113 DSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKL-DSKVNIIPVIAKADT--I 189 (406)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHH-hhhhhhHHHHHHhhh--h
Confidence 11 12222 22 1246788888854 44444444444444 346778889999997 3
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 006610 187 SEERCDEVESLVFDLFAN 204 (639)
Q Consensus 187 ~~~~~~~v~~~i~~l~~~ 204 (639)
....+......+..-+..
T Consensus 190 sK~eL~~FK~kimsEL~s 207 (406)
T KOG3859|consen 190 SKEELKRFKIKIMSELVS 207 (406)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 444444455555444433
No 463
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.015 Score=62.87 Aligned_cols=123 Identities=24% Similarity=0.283 Sum_probs=67.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC----------CCCccccccccc-cccccceeEeeee-------------EEE
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA----------DIPHERAMDSIS-LERERGITIASKV-------------TGI 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~----------~~~~~~v~D~~~-~e~ergiTi~~~~-------------~~~ 114 (639)
..-.|.++|-.|+||||.+..|...... +.+.....|... ...+-++.+.... ..+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3467999999999999998887654321 111100000000 1111122222110 011
Q ss_pred eecCceEEEEeCCCCC--C--chHHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCC
Q 006610 115 SWRENELNMVDTPGHA--D--FGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~--d--F~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (639)
.-..+.+.|+||.|-. | ...|....-.. -|=+|||+||.-| |...-...+-...+++ =|+++|+|-.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCC
Confidence 1235789999999933 2 34444443333 4779999999866 4433333343445664 4789999963
No 464
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.59 E-value=0.0031 Score=65.00 Aligned_cols=103 Identities=20% Similarity=0.127 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC-CchHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA-DFGGEVER 138 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~-dF~~ev~~ 138 (639)
..++-|+|-+|+|||||+|++......... ......+.|+|+..+...--.....+.++||||.. .-....+.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k------~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKK------AARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhcc------ceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHH
Confidence 468999999999999999999876553321 22344567999887764444455679999999932 11222233
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHHHHHHH
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALK 169 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l~~~~~ 169 (639)
.++.| .+.+|-|.--+...+..+++..+..
T Consensus 217 ~lKLA-L~g~Vkd~~V~~~~~adylL~~lN~ 246 (335)
T KOG2485|consen 217 GLKLA-LCGLVKDHLVGEETIADYLLYLLNS 246 (335)
T ss_pred hhhhh-hcccccccccCHHHHHHHHHHHHhc
Confidence 33322 1233444444444444444444433
No 465
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.58 E-value=0.013 Score=60.46 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHH----HcCCCcE-EEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL----KYGLRPI-LLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~----~~~lp~I-vviNKiD~ 183 (639)
.+.+.||||||..... .+..++..+|.+|+++.+.......+...++.+. ..+++.+ +|+|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999875421 2334688999999999876443333444443332 2356543 78999984
No 466
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.011 Score=62.59 Aligned_cols=122 Identities=21% Similarity=0.236 Sum_probs=70.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCC----------CCcccccccccc-ccccceeEeeeeEEEee-----------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD----------IPHERAMDSISL-ERERGITIASKVTGISW----------- 116 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----------~~~~~v~D~~~~-e~ergiTi~~~~~~~~~----------- 116 (639)
+.-.|.++|-.|+||||.+-.|....... ....-..|...+ ...-++.++.+++....
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 34578999999999999999887654321 111122333333 22346666655444322
Q ss_pred --cCceEEEEeCCCCCC----chHHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCC
Q 006610 117 --RENELNMVDTPGHAD----FGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (639)
Q Consensus 117 --~~~~i~iIDTPGh~d----F~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (639)
+++.+.|+||.|... +..|.....+. -|-+|+|+||.-| |..+-...+-+..+-+ -++++|+|-
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEeccc
Confidence 378999999999322 22333333222 4889999999866 3322222222222222 467899995
No 467
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.52 E-value=0.033 Score=59.21 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=48.2
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
.+.+.|||||+..+ .....++..+|.+|+|+++.-.-...+..+++.+...+...-+++|+...
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~ 267 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAP 267 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCC
Confidence 57899999998765 34778899999999999876554556667777777666555667787554
No 468
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.012 Score=59.89 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
--++|+|+.|+|||||+..+++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999983
No 469
>CHL00175 minD septum-site determining protein; Validated
Probab=96.45 E-value=0.023 Score=59.05 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~ 183 (639)
.+.+.|||||+... ..+..++..+|.+|+|++....-...+..+++.+.+.+.+ .-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 57899999998654 4566788899999999998765556667777777777764 4688999985
No 470
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.44 E-value=0.012 Score=60.28 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=74.5
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC---ccccccccccccc------cc------eeEeeeeEEEeec---
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---HERAMDSISLERE------RG------ITIASKVTGISWR--- 117 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---~~~v~D~~~~e~e------rg------iTi~~~~~~~~~~--- 117 (639)
...+++--.|.|..|+|||||++.++...+.... ...+-|+.+.|+. .| .-.......+..+
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~g 132 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNG 132 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchH
Confidence 3456888889999999999999999865432110 0112222222211 11 0011122222222
Q ss_pred ------------CceEEEEeCCCCCCchHHHH-----HHH---hhccEEEEEEeCCCCCchhHH----HHHHHH-HHcCC
Q 006610 118 ------------ENELNMVDTPGHADFGGEVE-----RVV---GMVEGAILVVDAGEGPLAQTK----FVLAKA-LKYGL 172 (639)
Q Consensus 118 ------------~~~i~iIDTPGh~dF~~ev~-----~~l---~~aD~allVVDa~~g~~~qt~----~~l~~~-~~~~l 172 (639)
.....++.|-|.++=..-.. ..+ -..||+|-||||.......+. -+|..| .+.-.
T Consensus 133 vraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~ 212 (391)
T KOG2743|consen 133 VRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIAL 212 (391)
T ss_pred HHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhh
Confidence 34678999999887432221 111 125999999999754321111 122111 11122
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHHHHH
Q 006610 173 RPILLLNKVDRPAVSEERCDEVESLVF 199 (639)
Q Consensus 173 p~IvviNKiD~~~~~~~~~~~v~~~i~ 199 (639)
.--+++||.|+.. .+.+..+.+.+.
T Consensus 213 AD~II~NKtDli~--~e~~~~l~q~I~ 237 (391)
T KOG2743|consen 213 ADRIIMNKTDLVS--EEEVKKLRQRIR 237 (391)
T ss_pred hheeeeccccccC--HHHHHHHHHHHH
Confidence 2357899999965 344455554443
No 471
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.39 E-value=0.036 Score=58.12 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=66.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc--ccccccc--------cc-ccccceeEeee-----eEEEee------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH--ERAMDSI--------SL-ERERGITIASK-----VTGISW------ 116 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~--~~v~D~~--------~~-e~ergiTi~~~-----~~~~~~------ 116 (639)
+...|.++|-.|+||||-+..|.+..-..... -...|+. .. ...-|+.+-.. .+++-|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 46789999999999999998887653211100 0000110 00 01123333221 111222
Q ss_pred --cCceEEEEeCCCC----CCchHHHHHHHhhc---cE-----EEEEEeCCCCCchhHHHHHHHHHHcC--CCc-EEEEc
Q 006610 117 --RENELNMVDTPGH----ADFGGEVERVVGMV---EG-----AILVVDAGEGPLAQTKFVLAKALKYG--LRP-ILLLN 179 (639)
Q Consensus 117 --~~~~i~iIDTPGh----~dF~~ev~~~l~~a---D~-----allVVDa~~g~~~qt~~~l~~~~~~~--lp~-IvviN 179 (639)
.++.+.|+||.|- ..+..|.....+.+ +. +++|+||+-|-. -+.+++.++ +++ =++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceEEEE
Confidence 3789999999993 34556665555544 44 788889988732 223333321 232 47899
Q ss_pred CCCC
Q 006610 180 KVDR 183 (639)
Q Consensus 180 KiD~ 183 (639)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9994
No 472
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.32 E-value=0.0043 Score=76.82 Aligned_cols=116 Identities=22% Similarity=0.292 Sum_probs=62.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHA------- 130 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~------- 130 (639)
..+=..|+|++|+|||||+... |..... .+.......+|+. ....|.| -..+-.+|||+|.-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s----gl~~pl---~~~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG~y~~~~~~~ 179 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS----GLKFPL---AERLGAAALRGVG---GTRNCDWWFTDEAVLIDTAGRYTTQDSDP 179 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC----CCCCcC---chhhccccccCCC---CCcccceEecCCEEEEcCCCccccCCCcc
Confidence 3567899999999999998765 211110 0100001111111 0111222 33567899999921
Q ss_pred -CchHHHHHHH---------hhccEEEEEEeCCCCCch---h-------HHHHHHH---HHHcCCCcEEEEcCCCCC
Q 006610 131 -DFGGEVERVV---------GMVEGAILVVDAGEGPLA---Q-------TKFVLAK---ALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 131 -dF~~ev~~~l---------~~aD~allVVDa~~g~~~---q-------t~~~l~~---~~~~~lp~IvviNKiD~~ 184 (639)
.-..++...+ +-.+|+|++||+.+=... + .+.-+.. .....+|+-|+++|||+.
T Consensus 180 ~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 180 EEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred cccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 1223343333 337999999997643321 1 1111111 122367999999999975
No 473
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.31 E-value=0.018 Score=59.47 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=41.2
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHH----HcCCCcE-EEEcCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL----KYGLRPI-LLLNKVD 182 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~----~~~lp~I-vviNKiD 182 (639)
+++.+.||||||...... ...++..||.+|+++.+..-........++.+. ..+++.+ +++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 358899999998653221 344578899999999775432333333333322 3466654 7899976
No 474
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.30 E-value=0.0072 Score=58.22 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=33.6
Q ss_pred cEEEEEEeCCCCCchhHHHHHHH--HHHcCCCcEEEEcCCCCC
Q 006610 144 EGAILVVDAGEGPLAQTKFVLAK--ALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l~~--~~~~~lp~IvviNKiD~~ 184 (639)
|.+++|+||..........+.+. +...+.|.|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999998877776776666 444578999999999993
No 475
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.18 E-value=0.016 Score=55.75 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+.+-++|+|..|+|||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4567999999999999999999865
No 476
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=96.17 E-value=0.053 Score=54.19 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred ceEEEEeCCCCCCchHH-HHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCC
Q 006610 119 NELNMVDTPGHADFGGE-VERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAV 186 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~e-v~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~ 186 (639)
+.+.|+|||........ +...+.. +|.+++|+.+......++...++.++..+.+. -+|+|++.....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~~ 185 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAEV 185 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCccc
Confidence 89999999975332221 2233333 48999999998888889999999999999885 689999986533
No 477
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.14 E-value=0.026 Score=59.16 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=41.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCCcE-EEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRPI-LLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~----~lp~I-vviNKiD~ 183 (639)
++.+.||||||.... .....++..||.+|+++++..--......+++.+... +++.. +++|+.|.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 578999999987432 2233467889999999987543333333444333322 44443 88999873
No 478
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.09 E-value=0.0075 Score=59.77 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=40.7
Q ss_pred CceEEEEeCCCCCCc------hHHHHHHHhhccEE---EEEEeCCCCCchh-----HHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 118 ENELNMVDTPGHADF------GGEVERVVGMVEGA---ILVVDAGEGPLAQ-----TKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF------~~ev~~~l~~aD~a---llVVDa~~g~~~q-----t~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
...+.|+|+||+.+| ...+.+.+...|.- +=++|+.--..+. ..-.+.-...+.+|.|=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 457899999997764 34555666666654 4445543111111 112233345568999999999997
Q ss_pred C
Q 006610 184 P 184 (639)
Q Consensus 184 ~ 184 (639)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 479
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.08 E-value=0.14 Score=52.49 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=49.2
Q ss_pred cCceEEEEeCCCCCC---chH--HH----HHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCC
Q 006610 117 RENELNMVDTPGHAD---FGG--EV----ERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~d---F~~--ev----~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (639)
..+.+.|+|||.-.. +.. ++ ...+. ..+++++|+....-....+.+.+..+...++++ -+|+||+.-.
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 368899999997322 111 11 11222 245889999988777788999999999999996 6899999864
Q ss_pred C
Q 006610 185 A 185 (639)
Q Consensus 185 ~ 185 (639)
.
T Consensus 203 ~ 203 (254)
T cd00550 203 D 203 (254)
T ss_pred c
Confidence 3
No 480
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.07 E-value=0.01 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 6899999999999999998544
No 481
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.06 E-value=0.028 Score=57.79 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=35.1
Q ss_pred CceEEEEeCCCCCCchHH-HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHH----HcCCCcE-EEEcC
Q 006610 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL----KYGLRPI-LLLNK 180 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~----~~~lp~I-vviNK 180 (639)
++.+.||||||+....+. ...++..+|.+|+++.+..-.......+++.+. ..+.++. ++.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 578999999986532111 112234799999999875432222233333222 2356655 44565
No 482
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.05 E-value=0.0053 Score=67.04 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=47.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC--CchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA--DFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~--dF~~ev~ 137 (639)
..+|++||.+|+||||+||+|.+.. ...+.+.+|-|-...+..+ .-.+.|.||||.. .|.. .
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~K-----------kVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~~--~ 377 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRK-----------KVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFSP--T 377 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCc-----------eeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCCc--h
Confidence 6899999999999999999999872 3344455566544433333 3568999999953 4532 2
Q ss_pred HHHhhccEEE
Q 006610 138 RVVGMVEGAI 147 (639)
Q Consensus 138 ~~l~~aD~al 147 (639)
++.-.++|++
T Consensus 378 r~emvl~GiL 387 (562)
T KOG1424|consen 378 RAEMVLNGIL 387 (562)
T ss_pred HHHHHHhcCc
Confidence 3444445543
No 483
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.03 E-value=0.044 Score=56.53 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc---------CCCcEEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY---------GLRPILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~---------~lp~IvviNKiD~ 183 (639)
.+.+.|+|||+.... ....++..+|.+|+++++...-...+..+++.+... +++..+++|++|.
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 588999999987643 456678999999999998765555555666665421 2234688999985
No 484
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.11 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..+|.|.|.+|+|||||+..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 358999999999999999988754
No 485
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.92 E-value=0.05 Score=55.50 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~ 83 (639)
|.++|.+|+||||+...|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 486
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.76 E-value=0.041 Score=56.68 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=40.8
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH----cCCCc-EEEEcCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK----YGLRP-ILLLNKVDR 183 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~~lp~-IvviNKiD~ 183 (639)
+.+.+.||||||...-. ....++..+|.+|+++....-....+..+++.+.+ .+++. .+|+|++|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 35899999999864311 11235789999999987643323333344433332 35554 478899985
No 487
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.75 E-value=0.053 Score=56.33 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=35.5
Q ss_pred cCceEEEEeCCCCCCchH-HHHHHHhhccEEEEEEeCCCCCchhHHHHHH---HHHH-cCCCcEEEEcC
Q 006610 117 RENELNMVDTPGHADFGG-EVERVVGMVEGAILVVDAGEGPLAQTKFVLA---KALK-YGLRPILLLNK 180 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~-ev~~~l~~aD~allVVDa~~g~~~qt~~~l~---~~~~-~~lp~IvviNK 180 (639)
.++.+.||||||..-... ....++..+|.+|+++.+..-.......+++ ...+ .+.++..+++.
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n 183 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYN 183 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEe
Confidence 368899999998542111 1122456689999999976433333333333 3322 35555434443
No 488
>PRK01889 GTPase RsgA; Reviewed
Probab=95.71 E-value=0.013 Score=63.21 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
..++|+|.+|+|||||++.|+.........-.. + ..+.+..|.......+.. ...++||||...|
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~-~---~~~g~~tt~~~~l~~l~~---~~~l~DtpG~~~~ 260 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTGAVRE-D---DSKGRHTTTHRELHPLPS---GGLLIDTPGMREL 260 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcccceeeEEE-C---CCCCcchhhhccEEEecC---CCeecCCCchhhh
Confidence 479999999999999999999764321111000 0 011122333333333322 2468899998665
No 489
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.53 E-value=0.088 Score=54.51 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=52.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEee-eeEEEeecCceEEEEeCCC----CCCchHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIAS-KVTGISWRENELNMVDTPG----HADFGGEV 136 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~-~~~~~~~~~~~i~iIDTPG----h~dF~~ev 136 (639)
=|+|+|.+++||||++..|....-. .+..+.. ....+.+.... ..|.-. ...+..++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~----------------~~~~v~~i~~~~~~~~~~~--y~~~~~Ek~~R~~l~s~v 64 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE----------------KGKEVVIISDDSLGIDRND--YADSKKEKEARGSLKSAV 64 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH----------------TT--EEEE-THHHH-TTSS--S--GGGHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh----------------cCCEEEEEcccccccchhh--hhchhhhHHHHHHHHHHH
Confidence 3889999999999999999875110 0100000 00000000000 011111 11244566
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
.+.++.- -|+++|...-....=.+++..|++.+.+..++--+++.
T Consensus 65 ~r~ls~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 65 ERALSKD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HHhhccC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 6776553 46678998888888889999999999998877767764
No 490
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.49 E-value=0.06 Score=55.74 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=39.4
Q ss_pred ecCceEEEEeCCCCCCch-HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH---cCCCcE-EEEcCCC
Q 006610 116 WRENELNMVDTPGHADFG-GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK---YGLRPI-LLLNKVD 182 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF~-~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~---~~lp~I-vviNKiD 182 (639)
++++.+.||||||..-.. -....++..+|.+|+++....-.......+++.+.. .++++. +++|+.+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 456899999999864211 011112457899999998643322222334444433 356664 7889875
No 491
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.40 E-value=0.014 Score=62.15 Aligned_cols=57 Identities=19% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG 128 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG 128 (639)
.+...++|+|-+++||||++|+|... -.-......|+|.......+ +..|.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~-----------k~C~vg~~pGvT~smqeV~L---dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR-----------KACNVGNVPGVTRSMQEVKL---DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh-----------ccccCCCCccchhhhhheec---cCCceeccCCc
No 492
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.39 E-value=0.083 Score=56.22 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=61.4
Q ss_pred ccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-----------chhHHHHHHHHHHc
Q 006610 102 ERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-----------LAQTKFVLAKALKY 170 (639)
Q Consensus 102 ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-----------~~qt~~~l~~~~~~ 170 (639)
.|--|.......|.+++.++-++|.+||.-=...|......++++|+|++-.+-- +..+..+++.....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 3455666777888899999999999999877777888889999999999865422 12333444444332
Q ss_pred ----CCCcEEEEcCCCC
Q 006610 171 ----GLRPILLLNKVDR 183 (639)
Q Consensus 171 ----~lp~IvviNKiD~ 183 (639)
+.++|+|+||.|+
T Consensus 258 ~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDL 274 (354)
T ss_pred cccccCcEEEEeecHHH
Confidence 5689999999997
No 493
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.36 E-value=0.019 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+.|+|+|..|+|||||+++|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999976
No 494
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.35 E-value=0.028 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Q 006610 63 VAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
|.++|++|+|||||++.|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999997744
No 495
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.30 E-value=0.11 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 47999999999999999999765
No 496
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.21 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...|+++|..|+|||||++.|...+
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 4578999999999999999887653
No 497
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.25 E-value=0.078 Score=54.86 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=35.9
Q ss_pred CceEEEEeCCCCCCchHH-HHHHHhhccEEEEEEeCCCCCchhHHHHHHH---H-HHcCCCcE-EEEcC
Q 006610 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAK---A-LKYGLRPI-LLLNK 180 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l~~---~-~~~~lp~I-vviNK 180 (639)
.+.+.||||||....... ...++..+|.+|+++.+..-.......+++. + ...++++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 578999999986521111 1122457899999998765433333333332 2 22355654 45565
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.21 E-value=0.021 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|.|+.|+|||||++++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 499
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.037 Score=53.62 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC---chHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD---FGGEVER 138 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d---F~~ev~~ 138 (639)
+|.|+|++||||||+...|....+......- |....+...+..... ..=.++|-....+ ....+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstg--d~~r~~~~~~t~lg~---------~~k~~i~~g~lv~d~i~~~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTG--DILRAAIAERTELGE---------EIKKYIDKGELVPDEIVNGLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHh--HHhHhhhccCChHHH---------HHHHHHHcCCccchHHHHHHHHH
Confidence 7999999999999999999988553221100 000000000100000 0001344444211 1244555
Q ss_pred HHhhccEE-EEEEeCCCCCchhHHHHHHHHHHcCCCcEEEE
Q 006610 139 VVGMVEGA-ILVVDAGEGPLAQTKFVLAKALKYGLRPILLL 178 (639)
Q Consensus 139 ~l~~aD~a-llVVDa~~g~~~qt~~~l~~~~~~~lp~Ivvi 178 (639)
.+..+|+. .+++|.......|.+.+-+.+.++|.+.-.++
T Consensus 71 rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~ 111 (178)
T COG0563 71 RLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111 (178)
T ss_pred HHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEE
Confidence 66666633 56778777677777777777777776554444
No 500
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.97 E-value=0.34 Score=47.98 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=41.1
Q ss_pred eEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEc
Q 006610 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLN 179 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviN 179 (639)
.+.|||||.-.+. ......+..+|.+|+|+.+..-........++.++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6899999976653 34445567899999999988777777777777776 45554 4555
Done!