Query 006610
Match_columns 639
No_of_seqs 587 out of 4281
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e3x_A BIPA; MCSG,PSI2, struct 100.0 8E-100 3E-104 786.0 22.3 300 337-639 2-310 (332)
2 4fn5_A EF-G 1, elongation fact 100.0 1.4E-88 4.8E-93 786.8 36.6 445 57-537 10-701 (709)
3 3j25_A Tetracycline resistance 100.0 7.1E-90 2.4E-94 787.9 11.5 442 59-538 1-618 (638)
4 2rdo_7 EF-G, elongation factor 100.0 3.2E-81 1.1E-85 722.6 49.5 444 57-536 7-694 (704)
5 2xex_A Elongation factor G; GT 100.0 4.8E-81 1.6E-85 720.6 43.7 445 56-536 6-682 (693)
6 2ywe_A GTP-binding protein LEP 100.0 1.9E-80 6.6E-85 698.8 41.5 445 58-546 4-498 (600)
7 1dar_A EF-G, elongation factor 100.0 4.5E-81 1.5E-85 720.6 36.0 444 57-536 9-683 (691)
8 3cb4_D GTP-binding protein LEP 100.0 2.4E-79 8.4E-84 691.3 43.4 446 58-547 2-494 (599)
9 2dy1_A Elongation factor G; tr 100.0 3.3E-77 1.1E-81 686.1 38.5 442 56-536 5-653 (665)
10 1n0u_A EF-2, elongation factor 100.0 3.4E-75 1.2E-79 684.3 40.4 469 58-538 17-810 (842)
11 3vqt_A RF-3, peptide chain rel 100.0 6.6E-74 2.3E-78 643.7 30.0 361 58-452 29-495 (548)
12 2h5e_A Peptide chain release f 100.0 8.5E-61 2.9E-65 535.3 34.7 362 58-454 11-475 (529)
13 3tr5_A RF-3, peptide chain rel 100.0 4.8E-61 1.6E-65 536.7 30.1 362 58-454 11-474 (528)
14 3j2k_7 ERF3, eukaryotic polype 100.0 1.5E-39 5.1E-44 356.8 29.5 282 58-356 15-329 (439)
15 2c78_A Elongation factor TU-A; 100.0 2.8E-39 9.7E-44 351.5 28.1 286 58-354 9-308 (405)
16 1d2e_A Elongation factor TU (E 100.0 2.6E-39 8.9E-44 350.8 26.6 278 60-354 3-290 (397)
17 1jny_A EF-1-alpha, elongation 100.0 5.5E-39 1.9E-43 352.3 25.1 283 58-356 4-319 (435)
18 3p26_A Elongation factor 1 alp 100.0 4.5E-38 1.5E-42 349.4 27.5 288 59-355 32-363 (483)
19 1r5b_A Eukaryotic peptide chai 100.0 1.8E-38 6E-43 350.9 20.1 281 58-355 41-357 (467)
20 3mca_A HBS1, elongation factor 100.0 7.3E-39 2.5E-43 362.8 15.8 283 58-355 175-490 (592)
21 1zun_B Sulfate adenylate trans 100.0 2.8E-37 9.5E-42 338.7 26.4 281 58-355 22-327 (434)
22 1f60_A Elongation factor EEF1A 100.0 4.9E-37 1.7E-41 338.6 25.3 283 59-355 6-329 (458)
23 3izq_1 HBS1P, elongation facto 100.0 3.4E-37 1.2E-41 350.1 24.6 289 58-355 165-497 (611)
24 3avx_A Elongation factor TS, e 100.0 8.2E-37 2.8E-41 357.6 27.8 280 58-355 294-582 (1289)
25 1g7s_A Translation initiation 100.0 4.8E-37 1.6E-41 346.9 20.2 302 59-400 4-373 (594)
26 2elf_A Protein translation elo 100.0 9.8E-37 3.3E-41 326.9 21.3 239 61-352 22-275 (370)
27 1kk1_A EIF2gamma; initiation o 100.0 6.1E-36 2.1E-40 325.8 27.7 265 58-355 8-317 (410)
28 1s0u_A EIF-2-gamma, translatio 100.0 3.9E-35 1.3E-39 319.2 24.3 266 57-355 5-315 (408)
29 1wb1_A Translation elongation 100.0 5.4E-36 1.8E-40 332.0 15.0 257 59-351 18-281 (482)
30 3sjy_A Translation initiation 100.0 9.5E-34 3.2E-38 307.8 28.0 274 58-355 6-309 (403)
31 1zo1_I IF2, translation initia 100.0 1.4E-35 4.9E-40 327.3 10.8 252 59-355 3-259 (501)
32 3izy_P Translation initiation 100.0 2.3E-35 8E-40 328.2 4.4 255 59-356 3-261 (537)
33 3qq5_A Small GTP-binding prote 99.8 1.4E-21 4.9E-26 212.0 10.8 184 55-278 29-227 (423)
34 4dhe_A Probable GTP-binding pr 99.8 9.7E-21 3.3E-25 187.3 12.3 174 56-258 25-215 (223)
35 2lkc_A Translation initiation 99.8 7.3E-21 2.5E-25 180.7 10.9 162 58-252 6-169 (178)
36 2dyk_A GTP-binding protein; GT 99.8 7.5E-20 2.6E-24 170.5 14.7 154 60-253 1-161 (161)
37 2hjg_A GTP-binding protein ENG 99.8 5.9E-20 2E-24 201.2 14.8 152 58-226 173-335 (436)
38 1wf3_A GTP-binding protein; GT 99.8 9.3E-20 3.2E-24 189.9 15.4 158 59-254 6-173 (301)
39 3iev_A GTP-binding protein ERA 99.8 1.5E-19 5.3E-24 188.9 16.9 163 59-255 9-183 (308)
40 3t1o_A Gliding protein MGLA; G 99.8 1.1E-19 3.8E-24 175.1 13.5 168 58-252 12-190 (198)
41 3pqc_A Probable GTP-binding pr 99.8 7.1E-19 2.4E-23 169.2 17.5 163 55-253 18-193 (195)
42 2efe_B Small GTP-binding prote 99.8 4E-19 1.4E-23 169.1 15.5 162 59-255 11-176 (181)
43 1svi_A GTP-binding protein YSX 99.8 5.4E-19 1.9E-23 170.6 15.9 162 57-253 20-194 (195)
44 4dcu_A GTP-binding protein ENG 99.8 2.7E-19 9.4E-24 197.0 14.5 164 58-252 193-367 (456)
45 4bas_A ADP-ribosylation factor 99.8 3.6E-19 1.2E-23 172.3 13.6 163 57-253 14-188 (199)
46 1ega_A Protein (GTP-binding pr 99.8 2.3E-19 7.8E-24 187.0 12.5 160 59-254 7-175 (301)
47 1zd9_A ADP-ribosylation factor 99.8 1.2E-18 4E-23 168.0 16.2 160 59-254 21-185 (188)
48 1zj6_A ADP-ribosylation factor 99.8 1.2E-18 4E-23 167.6 15.9 162 59-257 15-181 (187)
49 1z0f_A RAB14, member RAS oncog 99.8 8.5E-19 2.9E-23 166.1 14.7 160 58-252 13-176 (179)
50 1r2q_A RAS-related protein RAB 99.8 6.7E-19 2.3E-23 165.2 13.5 161 59-254 5-169 (170)
51 2fg5_A RAB-22B, RAS-related pr 99.8 7.5E-19 2.5E-23 170.0 13.7 162 59-255 22-187 (192)
52 2y8e_A RAB-protein 6, GH09086P 99.8 9.5E-19 3.3E-23 165.8 14.0 159 59-254 13-177 (179)
53 3iby_A Ferrous iron transport 99.8 3.8E-19 1.3E-23 181.0 11.8 151 61-251 2-164 (256)
54 3tkl_A RAS-related protein RAB 99.8 1.2E-18 4.2E-23 168.1 14.7 159 58-253 14-178 (196)
55 3bc1_A RAS-related protein RAB 99.8 1.7E-18 5.8E-23 166.2 15.5 160 57-252 8-183 (195)
56 3i8s_A Ferrous iron transport 99.8 4.2E-19 1.4E-23 182.5 11.9 156 60-255 3-170 (274)
57 2hup_A RAS-related protein RAB 99.8 1.3E-18 4.3E-23 170.0 14.6 161 57-253 26-192 (201)
58 3clv_A RAB5 protein, putative; 99.8 2.2E-18 7.4E-23 166.5 16.0 157 58-252 5-202 (208)
59 1r8s_A ADP-ribosylation factor 99.8 4.8E-18 1.6E-22 158.9 17.9 155 62-253 2-161 (164)
60 2h17_A ADP-ribosylation factor 99.8 9.1E-19 3.1E-23 167.6 13.0 156 59-251 20-180 (181)
61 2gf9_A RAS-related protein RAB 99.8 9.2E-19 3.1E-23 168.6 13.0 161 58-253 20-184 (189)
62 2oil_A CATX-8, RAS-related pro 99.8 9.5E-19 3.2E-23 168.9 12.8 161 57-252 22-186 (193)
63 2hxs_A RAB-26, RAS-related pro 99.8 1.5E-18 5E-23 164.7 13.7 160 59-255 5-174 (178)
64 2h57_A ADP-ribosylation factor 99.8 1.8E-18 6.3E-23 166.6 14.2 161 58-253 19-186 (190)
65 1z0j_A RAB-22, RAS-related pro 99.8 2.2E-18 7.6E-23 161.8 14.3 161 59-254 5-169 (170)
66 3tw8_B RAS-related protein RAB 99.8 6.3E-19 2.2E-23 167.3 10.6 159 58-253 7-170 (181)
67 2wji_A Ferrous iron transport 99.8 1.7E-18 5.7E-23 163.4 13.3 153 60-252 3-163 (165)
68 2g6b_A RAS-related protein RAB 99.8 2.8E-18 9.5E-23 163.1 14.9 160 58-253 8-173 (180)
69 2p5s_A RAS and EF-hand domain 99.8 2.4E-18 8.2E-23 167.4 14.7 167 56-253 24-196 (199)
70 2il1_A RAB12; G-protein, GDP, 99.8 1.4E-18 4.7E-23 168.2 12.8 159 58-252 24-188 (192)
71 2atx_A Small GTP binding prote 99.8 1.8E-18 6.1E-23 167.2 13.5 166 56-255 14-194 (194)
72 2fu5_C RAS-related protein RAB 99.8 8.9E-19 3E-23 167.3 11.0 159 58-253 6-170 (183)
73 1upt_A ARL1, ADP-ribosylation 99.8 2.4E-18 8.3E-23 161.9 13.8 158 59-253 6-168 (171)
74 1zbd_A Rabphilin-3A; G protein 99.8 3.6E-18 1.2E-22 166.2 15.3 159 59-252 7-169 (203)
75 1wms_A RAB-9, RAB9, RAS-relate 99.8 5E-18 1.7E-22 160.9 15.8 158 59-253 6-173 (177)
76 2bme_A RAB4A, RAS-related prot 99.8 1.6E-18 5.6E-23 165.8 12.4 159 58-253 8-172 (186)
77 3dz8_A RAS-related protein RAB 99.8 6E-19 2E-23 170.4 9.3 160 58-252 21-184 (191)
78 2erx_A GTP-binding protein DI- 99.8 5.7E-18 1.9E-22 159.1 15.8 160 60-255 3-168 (172)
79 1ek0_A Protein (GTP-binding pr 99.8 5.3E-18 1.8E-22 159.0 15.4 162 60-253 3-168 (170)
80 3kkq_A RAS-related protein M-R 99.8 4.4E-18 1.5E-22 162.5 15.1 158 59-252 17-180 (183)
81 1g16_A RAS-related protein SEC 99.8 2E-18 6.9E-23 162.1 12.5 156 60-253 3-164 (170)
82 2a5j_A RAS-related protein RAB 99.8 2.2E-18 7.5E-23 166.4 13.0 160 58-252 19-182 (191)
83 3k53_A Ferrous iron transport 99.8 1.7E-18 5.6E-23 177.6 12.7 154 60-253 3-165 (271)
84 1u8z_A RAS-related protein RAL 99.8 5E-18 1.7E-22 158.6 14.9 157 60-252 4-165 (168)
85 3a1s_A Iron(II) transport prot 99.8 1.4E-18 4.7E-23 177.1 11.8 155 59-253 4-166 (258)
86 1z06_A RAS-related protein RAB 99.8 2.1E-18 7.2E-23 166.1 12.5 159 58-253 18-187 (189)
87 2nzj_A GTP-binding protein REM 99.8 4.1E-18 1.4E-22 161.0 14.1 158 59-252 3-167 (175)
88 2fh5_B SR-beta, signal recogni 99.8 1.3E-17 4.6E-22 163.7 18.1 168 59-252 6-214 (214)
89 1kao_A RAP2A; GTP-binding prot 99.8 3.2E-18 1.1E-22 159.8 12.7 157 60-252 3-164 (167)
90 1mky_A Probable GTP-binding pr 99.8 6.4E-18 2.2E-22 185.2 17.2 155 61-254 2-166 (439)
91 2ew1_A RAS-related protein RAB 99.8 3.5E-18 1.2E-22 167.3 13.3 159 58-253 24-188 (201)
92 3cph_A RAS-related protein SEC 99.8 3.4E-18 1.2E-22 167.4 13.3 158 58-253 18-181 (213)
93 2f7s_A C25KG, RAS-related prot 99.8 1.4E-18 4.8E-23 171.1 10.6 158 58-252 23-197 (217)
94 3llu_A RAS-related GTP-binding 99.8 6.7E-18 2.3E-22 163.9 15.2 166 57-252 17-195 (196)
95 2a9k_A RAS-related protein RAL 99.8 6.7E-18 2.3E-22 161.1 14.8 156 59-252 17-179 (187)
96 2b6h_A ADP-ribosylation factor 99.8 1E-17 3.5E-22 162.2 16.3 160 57-253 26-190 (192)
97 1fzq_A ADP-ribosylation factor 99.8 2.2E-17 7.6E-22 158.2 18.4 160 58-254 14-178 (181)
98 2bov_A RAla, RAS-related prote 99.8 1.1E-17 3.7E-22 162.8 16.3 158 58-253 12-176 (206)
99 4dsu_A GTPase KRAS, isoform 2B 99.8 7.2E-18 2.4E-22 161.3 14.7 155 60-253 4-165 (189)
100 1m2o_B GTP-binding protein SAR 99.8 8E-18 2.7E-22 162.8 15.1 158 60-252 23-190 (190)
101 1x3s_A RAS-related protein RAB 99.8 5.5E-18 1.9E-22 163.2 13.7 160 59-254 14-178 (195)
102 1ksh_A ARF-like protein 2; sma 99.8 3.2E-18 1.1E-22 164.0 12.0 160 58-254 16-180 (186)
103 1z2a_A RAS-related protein RAB 99.8 3.4E-18 1.2E-22 160.2 11.9 159 59-252 4-165 (168)
104 2wjg_A FEOB, ferrous iron tran 99.8 5.1E-18 1.7E-22 162.8 13.2 157 59-255 6-170 (188)
105 4gzl_A RAS-related C3 botulinu 99.8 1.9E-18 6.4E-23 169.1 10.3 161 58-252 28-203 (204)
106 1ky3_A GTP-binding protein YPT 99.7 2.8E-18 9.5E-23 163.0 11.0 160 58-252 6-176 (182)
107 2fn4_A P23, RAS-related protei 99.7 3.8E-18 1.3E-22 161.9 11.8 158 58-253 7-171 (181)
108 3t5g_A GTP-binding protein RHE 99.7 1.9E-18 6.6E-23 164.7 9.8 160 59-254 5-169 (181)
109 1c1y_A RAS-related protein RAP 99.7 1E-17 3.4E-22 156.8 14.6 158 60-252 3-165 (167)
110 3q72_A GTP-binding protein RAD 99.7 6.5E-18 2.2E-22 158.3 13.1 156 60-252 2-162 (166)
111 3oes_A GTPase rhebl1; small GT 99.7 2.9E-18 1E-22 167.0 10.9 163 56-254 20-187 (201)
112 3bwd_D RAC-like GTP-binding pr 99.7 2.1E-18 7.1E-23 164.2 9.6 166 59-255 7-182 (182)
113 2ce2_X GTPase HRAS; signaling 99.7 2.2E-17 7.5E-22 153.7 16.3 155 61-252 4-163 (166)
114 1vg8_A RAS-related protein RAB 99.7 5.4E-18 1.8E-22 165.2 12.4 159 58-253 6-174 (207)
115 1mh1_A RAC1; GTP-binding, GTPa 99.7 6.1E-18 2.1E-22 161.4 12.5 165 60-256 5-182 (186)
116 2o52_A RAS-related protein RAB 99.7 1.8E-18 6.3E-23 168.6 9.0 159 58-253 23-187 (200)
117 1f6b_A SAR1; gtpases, N-termin 99.7 7.4E-18 2.5E-22 164.2 13.3 158 60-252 25-197 (198)
118 2gj8_A MNME, tRNA modification 99.7 4.5E-18 1.6E-22 161.9 11.4 152 60-254 4-166 (172)
119 2hjg_A GTP-binding protein ENG 99.7 6.2E-18 2.1E-22 185.2 13.9 154 61-254 4-165 (436)
120 2xtp_A GTPase IMAP family memb 99.7 5.3E-18 1.8E-22 172.4 12.2 169 59-254 21-208 (260)
121 1z08_A RAS-related protein RAB 99.7 3.5E-18 1.2E-22 160.7 10.1 158 59-253 5-168 (170)
122 2qu8_A Putative nucleolar GTP- 99.7 2.9E-17 1E-21 163.5 17.4 164 58-253 27-204 (228)
123 2gf0_A GTP-binding protein DI- 99.7 3E-17 1E-21 158.7 16.5 160 59-255 7-172 (199)
124 2bcg_Y Protein YP2, GTP-bindin 99.7 8.8E-18 3E-22 164.0 12.8 159 58-253 6-170 (206)
125 3b1v_A Ferrous iron uptake tra 99.7 5.2E-18 1.8E-22 174.1 11.5 154 60-254 3-164 (272)
126 3gj0_A GTP-binding nuclear pro 99.7 3.6E-18 1.2E-22 168.9 10.0 161 56-253 11-174 (221)
127 2j0v_A RAC-like GTP-binding pr 99.7 6E-18 2.1E-22 165.9 11.5 166 59-256 8-182 (212)
128 3con_A GTPase NRAS; structural 99.7 1.7E-17 5.8E-22 159.5 14.4 154 60-252 21-181 (190)
129 1moz_A ARL1, ADP-ribosylation 99.7 6.7E-18 2.3E-22 161.0 10.1 159 58-253 16-179 (183)
130 3q85_A GTP-binding protein REM 99.7 2E-17 7E-22 155.4 13.3 158 60-252 2-165 (169)
131 3reg_A RHO-like small GTPase; 99.7 4.5E-18 1.5E-22 164.4 9.0 164 58-254 21-188 (194)
132 3gee_A MNME, tRNA modification 99.7 7.7E-18 2.6E-22 185.6 12.0 155 61-256 234-401 (476)
133 4dkx_A RAS-related protein RAB 99.7 2.6E-17 8.9E-22 163.1 14.3 161 59-254 12-176 (216)
134 1mky_A Probable GTP-binding pr 99.7 3.9E-17 1.3E-21 179.0 16.6 163 59-252 179-353 (439)
135 3cpj_B GTP-binding protein YPT 99.7 8.4E-18 2.9E-22 166.7 10.1 160 58-254 11-176 (223)
136 2j1l_A RHO-related GTP-binding 99.7 4E-17 1.4E-21 160.9 14.4 162 59-253 33-208 (214)
137 3o47_A ADP-ribosylation factor 99.7 2.1E-17 7.2E-22 174.2 13.2 158 59-253 164-326 (329)
138 3q3j_B RHO-related GTP-binding 99.7 1.5E-17 5.2E-22 164.1 11.3 166 58-254 25-203 (214)
139 3ihw_A Centg3; RAS, centaurin, 99.7 3E-17 1E-21 158.0 12.8 154 58-252 18-178 (184)
140 2x77_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 160.5 10.1 159 59-254 21-184 (189)
141 4dcu_A GTP-binding protein ENG 99.7 1.2E-17 4E-22 184.0 11.1 156 60-255 23-186 (456)
142 2gco_A H9, RHO-related GTP-bin 99.7 2.4E-17 8.2E-22 160.6 11.9 161 60-252 25-198 (201)
143 2fv8_A H6, RHO-related GTP-bin 99.7 2.4E-17 8.3E-22 161.4 11.7 165 60-256 25-202 (207)
144 3t5d_A Septin-7; GTP-binding p 99.7 7.5E-17 2.6E-21 165.5 14.7 168 59-254 7-204 (274)
145 3cbq_A GTP-binding protein REM 99.7 8.3E-17 2.8E-21 156.4 14.0 162 58-256 21-190 (195)
146 2q3h_A RAS homolog gene family 99.7 4.6E-17 1.6E-21 158.1 12.1 163 58-254 18-195 (201)
147 2cxx_A Probable GTP-binding pr 99.7 4.4E-17 1.5E-21 156.1 11.7 157 61-254 2-184 (190)
148 3c5c_A RAS-like protein 12; GD 99.7 5.9E-17 2E-21 156.1 12.6 157 59-252 20-184 (187)
149 4djt_A GTP-binding nuclear pro 99.7 1.5E-17 5.3E-22 163.7 8.7 162 58-254 9-175 (218)
150 2atv_A RERG, RAS-like estrogen 99.7 1.5E-16 5.2E-21 154.1 15.3 163 54-252 22-189 (196)
151 3l0i_B RAS-related protein RAB 99.7 7.4E-19 2.5E-23 171.0 -1.3 159 58-253 31-195 (199)
152 3r7w_A Gtpase1, GTP-binding pr 99.7 1.4E-16 4.9E-21 166.3 15.8 164 60-253 3-180 (307)
153 3th5_A RAS-related C3 botulinu 99.5 1.3E-18 4.3E-23 169.9 0.0 162 57-251 27-202 (204)
154 3lxw_A GTPase IMAP family memb 99.7 1.5E-16 5.1E-21 160.9 14.7 169 59-254 20-208 (247)
155 2yc2_C IFT27, small RAB-relate 99.7 1.8E-17 6.1E-22 161.2 6.7 157 59-252 19-190 (208)
156 2iwr_A Centaurin gamma 1; ANK 99.7 5.1E-16 1.7E-20 147.4 15.0 153 59-252 6-167 (178)
157 1m7b_A RND3/RHOE small GTP-bin 99.7 1.1E-16 3.8E-21 153.4 10.4 163 58-252 5-181 (184)
158 3geh_A MNME, tRNA modification 99.7 1E-16 3.5E-21 176.0 11.2 154 61-256 225-386 (462)
159 1xzp_A Probable tRNA modificat 99.7 2.3E-16 7.8E-21 174.0 13.7 152 61-253 244-404 (482)
160 1gwn_A RHO-related GTP-binding 99.7 1.5E-16 5E-21 156.1 10.2 162 58-251 26-201 (205)
161 3lvq_E ARF-GAP with SH3 domain 99.7 5.1E-16 1.7E-20 172.7 15.8 158 59-254 321-484 (497)
162 1lnz_A SPO0B-associated GTP-bi 99.6 7E-16 2.4E-20 163.1 10.9 156 60-254 158-330 (342)
163 2qag_A Septin-2, protein NEDD5 99.6 9.1E-16 3.1E-20 163.7 10.4 197 60-290 37-264 (361)
164 2wkq_A NPH1-1, RAS-related C3 99.6 1.3E-15 4.3E-20 159.5 10.9 163 59-255 154-331 (332)
165 2g3y_A GTP-binding protein GEM 99.6 2.8E-15 9.6E-20 147.9 12.4 159 58-252 35-201 (211)
166 3lxx_A GTPase IMAP family memb 99.6 2.2E-15 7.6E-20 151.1 11.6 167 57-252 26-212 (239)
167 1nrj_B SR-beta, signal recogni 99.6 5.5E-15 1.9E-19 145.3 13.2 145 58-225 10-169 (218)
168 2e87_A Hypothetical protein PH 99.6 1.4E-14 4.7E-19 154.4 16.9 156 59-253 166-335 (357)
169 2qtf_A Protein HFLX, GTP-bindi 99.6 8.8E-15 3E-19 156.1 15.2 165 59-256 178-356 (364)
170 2zej_A Dardarin, leucine-rich 99.6 4.2E-15 1.5E-19 142.5 10.5 168 61-254 3-178 (184)
171 2aka_B Dynamin-1; fusion prote 99.6 1.1E-14 3.7E-19 150.6 13.8 171 59-251 25-250 (299)
172 3p32_A Probable GTPase RV1496/ 99.6 4.3E-15 1.5E-19 158.2 10.7 173 59-254 78-284 (355)
173 1jwy_B Dynamin A GTPase domain 99.6 6.6E-15 2.3E-19 153.6 11.8 116 117-254 129-262 (315)
174 3def_A T7I23.11 protein; chlor 99.6 7.5E-15 2.6E-19 149.6 11.8 116 59-185 35-165 (262)
175 2p67_A LAO/AO transport system 99.6 7.1E-15 2.4E-19 155.7 11.1 172 58-253 54-260 (341)
176 3dpu_A RAB family protein; roc 99.6 4.5E-15 1.5E-19 166.6 9.3 161 59-256 40-210 (535)
177 2cjw_A GTP-binding protein GEM 99.6 2.2E-14 7.4E-19 138.9 12.9 157 60-252 6-170 (192)
178 2f9l_A RAB11B, member RAS onco 99.6 1.8E-14 6E-19 140.0 12.2 158 59-253 4-167 (199)
179 1pui_A ENGB, probable GTP-bind 99.5 6.8E-14 2.3E-18 136.5 15.0 163 58-254 24-199 (210)
180 3r7w_B Gtpase2, GTP-binding pr 99.5 6.9E-14 2.4E-18 145.8 15.5 163 62-254 1-174 (331)
181 1h65_A Chloroplast outer envel 99.5 1E-13 3.5E-18 141.8 14.1 115 60-185 39-168 (270)
182 1oix_A RAS-related protein RAB 99.5 9.6E-14 3.3E-18 134.1 12.1 158 58-252 27-190 (191)
183 2j69_A Bacterial dynamin-like 99.5 1.2E-13 4E-18 159.3 14.3 121 119-253 174-324 (695)
184 3c5h_A Glucocorticoid receptor 99.5 1.3E-13 4.4E-18 139.9 11.6 85 142-252 162-253 (255)
185 2ged_A SR-beta, signal recogni 99.5 9.4E-14 3.2E-18 133.6 8.6 113 59-187 47-172 (193)
186 1wxq_A GTP-binding protein; st 99.4 5.7E-14 2E-18 151.4 5.1 82 62-155 2-114 (397)
187 2qpt_A EH domain-containing pr 99.4 6.6E-13 2.3E-17 149.0 13.5 142 55-198 60-243 (550)
188 2x2e_A Dynamin-1; nitration, h 99.4 3.2E-13 1.1E-17 143.6 9.9 170 59-250 30-254 (353)
189 1udx_A The GTP-binding protein 99.4 1.9E-12 6.5E-17 140.0 15.2 156 60-254 157-325 (416)
190 2www_A Methylmalonic aciduria 99.4 2E-12 6.8E-17 137.2 14.0 115 116-253 164-278 (349)
191 2wsm_A Hydrogenase expression/ 99.4 2.4E-13 8.2E-18 134.0 6.0 165 59-254 29-214 (221)
192 1yrb_A ATP(GTP)binding protein 99.3 1.3E-12 4.3E-17 132.3 7.0 172 59-253 13-256 (262)
193 3t34_A Dynamin-related protein 99.3 5.6E-12 1.9E-16 134.3 10.4 97 118-225 135-246 (360)
194 3zvr_A Dynamin-1; hydrolase, D 99.3 1.4E-11 4.7E-16 141.5 13.4 170 59-250 50-274 (772)
195 4a9a_A Ribosome-interacting GT 99.3 6.6E-11 2.3E-15 126.0 16.0 114 59-185 71-196 (376)
196 2qag_C Septin-7; cell cycle, c 99.2 1.2E-10 4E-15 126.1 13.6 164 60-253 31-226 (418)
197 2j37_W Signal recognition part 99.2 4.4E-11 1.5E-15 132.1 8.8 169 58-251 99-310 (504)
198 1jal_A YCHF protein; nucleotid 99.1 5E-10 1.7E-14 118.6 15.0 82 61-154 3-108 (363)
199 2qnr_A Septin-2, protein NEDD5 99.1 2.9E-10 9.8E-15 118.1 12.8 164 60-252 18-212 (301)
200 2dby_A GTP-binding protein; GD 99.1 1.1E-09 3.8E-14 116.5 16.7 82 61-154 2-111 (368)
201 2qm8_A GTPase/ATPase; G protei 99.1 8.1E-11 2.8E-15 124.2 7.7 117 115-253 144-260 (337)
202 2hf9_A Probable hydrogenase ni 99.0 7.7E-10 2.6E-14 109.0 8.1 164 59-252 37-222 (226)
203 4fid_A G protein alpha subunit 99.0 7.2E-10 2.5E-14 116.4 7.9 136 103-252 145-326 (340)
204 3ohm_A Guanine nucleotide-bind 98.9 1.7E-09 5.8E-14 113.1 8.0 135 103-252 151-316 (327)
205 1cip_A Protein (guanine nucleo 98.9 1.7E-09 6E-14 114.5 7.2 135 104-252 178-342 (353)
206 3e1y_E Eukaryotic peptide chai 98.9 4E-09 1.4E-13 103.1 8.2 85 259-356 3-91 (204)
207 2qag_B Septin-6, protein NEDD5 98.8 2E-08 6.7E-13 108.4 12.2 145 59-221 41-217 (427)
208 1zcb_A G alpha I/13; GTP-bindi 98.8 2.7E-09 9.4E-14 113.4 4.5 133 106-252 188-351 (362)
209 3sop_A Neuronal-specific septi 98.8 9.7E-08 3.3E-12 97.4 15.0 141 61-207 3-174 (270)
210 1tq4_A IIGP1, interferon-induc 98.7 1.4E-07 4.9E-12 101.6 14.4 165 62-255 71-254 (413)
211 2ohf_A Protein OLA1, GTP-bindi 98.6 4.7E-08 1.6E-12 104.5 7.9 83 60-154 22-128 (396)
212 2v3c_C SRP54, signal recogniti 98.6 1.5E-08 5.1E-13 110.1 3.2 123 59-184 98-251 (432)
213 1u0l_A Probable GTPase ENGC; p 98.5 1.1E-07 3.7E-12 98.6 7.5 104 119-249 63-168 (301)
214 1azs_C GS-alpha; complex (lyas 98.5 5.2E-08 1.8E-12 104.5 5.3 78 106-183 204-296 (402)
215 3ec1_A YQEH GTPase; atnos1, at 98.5 1.1E-08 3.6E-13 109.3 -0.4 116 61-185 163-288 (369)
216 3h2y_A GTPase family protein; 98.5 1.5E-08 5.2E-13 108.0 0.6 117 61-185 161-287 (368)
217 3dm5_A SRP54, signal recogniti 98.4 2E-06 6.9E-11 93.1 14.8 123 59-184 99-252 (443)
218 3kl4_A SRP54, signal recogniti 98.4 1.1E-06 3.9E-11 95.0 12.9 124 59-184 96-251 (433)
219 2xtz_A Guanine nucleotide-bind 98.4 1.3E-07 4.5E-12 100.0 5.4 122 117-252 181-343 (354)
220 2xxa_A Signal recognition part 98.4 7E-07 2.4E-11 97.0 9.3 124 58-184 98-253 (433)
221 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 9E-07 3.1E-11 94.7 9.2 84 60-154 20-127 (392)
222 1j8m_F SRP54, signal recogniti 98.2 1.1E-06 3.7E-11 90.9 6.9 122 60-184 98-252 (297)
223 1puj_A YLQF, conserved hypothe 98.2 2.7E-06 9.3E-11 87.2 8.3 102 123-253 3-105 (282)
224 3l82_B F-box only protein 4; T 98.1 4.8E-06 1.7E-10 80.7 8.1 112 120-254 97-223 (227)
225 2yv5_A YJEQ protein; hydrolase 98.1 3.8E-06 1.3E-10 86.9 6.6 96 129-248 66-163 (302)
226 1f5n_A Interferon-induced guan 98.0 3.9E-06 1.3E-10 94.2 4.7 105 59-170 37-148 (592)
227 3ec1_A YQEH GTPase; atnos1, at 97.9 1.4E-05 4.7E-10 85.1 8.3 111 120-252 50-160 (369)
228 4dzz_A Plasmid partitioning pr 97.9 5.1E-05 1.8E-09 72.9 10.8 121 61-184 2-143 (206)
229 1zu4_A FTSY; GTPase, signal re 97.9 0.00012 4.1E-09 76.3 13.4 122 58-184 103-267 (320)
230 3cnl_A YLQF, putative uncharac 97.8 9.7E-06 3.3E-10 82.1 3.9 94 127-252 5-99 (262)
231 3l2o_B F-box only protein 4; s 97.8 5.6E-05 1.9E-09 76.7 9.2 105 127-254 195-308 (312)
232 1puj_A YLQF, conserved hypothe 97.8 2.5E-05 8.6E-10 79.9 6.1 59 59-131 119-177 (282)
233 3h2y_A GTPase family protein; 97.7 3.3E-05 1.1E-09 82.1 6.9 102 128-252 55-158 (368)
234 3e70_C DPA, signal recognition 97.7 0.00015 5.3E-09 75.7 11.7 123 59-183 128-280 (328)
235 2ph1_A Nucleotide-binding prot 97.6 0.00022 7.4E-09 71.8 11.0 67 117-183 127-194 (262)
236 3cwq_A Para family chromosome 97.6 8.5E-05 2.9E-09 72.3 7.4 120 62-184 2-133 (209)
237 2yhs_A FTSY, cell division pro 97.6 0.00018 6.3E-09 78.6 9.9 123 58-183 291-450 (503)
238 2ffh_A Protein (FFH); SRP54, s 97.5 0.00019 6.6E-09 77.4 9.1 123 59-184 97-250 (425)
239 3cnl_A YLQF, putative uncharac 97.5 4.2E-05 1.4E-09 77.4 3.7 58 61-132 100-157 (262)
240 1vma_A Cell division protein F 97.5 0.00016 5.5E-09 74.8 7.8 123 59-184 103-262 (306)
241 3k9g_A PF-32 protein; ssgcid, 97.5 0.00049 1.7E-08 69.2 11.1 66 117-184 143-210 (267)
242 1rj9_A FTSY, signal recognitio 97.5 0.00037 1.3E-08 72.0 10.1 123 59-184 101-260 (304)
243 3szr_A Interferon-induced GTP- 97.5 0.00027 9.1E-09 80.1 9.6 67 119-185 147-228 (608)
244 2px0_A Flagellar biosynthesis 97.4 0.00029 9.9E-09 72.5 8.7 124 59-184 104-252 (296)
245 1xe1_A Hypothetical protein PF 97.2 0.0021 7.1E-08 55.9 10.3 79 260-352 32-113 (116)
246 1ls1_A Signal recognition part 97.2 0.0005 1.7E-08 70.7 7.4 123 59-184 97-250 (295)
247 3kjh_A CO dehydrogenase/acetyl 97.2 0.00019 6.6E-09 70.9 4.0 65 117-183 130-195 (254)
248 1t9h_A YLOQ, probable GTPase E 97.2 0.00025 8.4E-09 73.3 4.8 78 139-225 83-162 (307)
249 3end_A Light-independent proto 97.2 0.00043 1.5E-08 71.2 6.3 66 117-183 155-225 (307)
250 1wcv_1 SOJ, segregation protei 97.1 0.0011 3.8E-08 66.3 9.0 66 117-184 110-182 (257)
251 2oze_A ORF delta'; para, walke 97.1 0.0024 8.2E-08 65.2 10.8 65 118-184 154-225 (298)
252 3q9l_A Septum site-determining 97.0 0.0011 3.6E-08 66.1 7.6 64 118-183 113-185 (260)
253 1g3q_A MIND ATPase, cell divis 97.0 0.0016 5.4E-08 63.9 8.7 65 118-184 111-176 (237)
254 1hyq_A MIND, cell division inh 97.0 0.0011 3.9E-08 66.2 7.7 64 118-183 110-174 (263)
255 3la6_A Tyrosine-protein kinase 97.0 0.0033 1.1E-07 64.2 10.9 67 118-185 201-268 (286)
256 3bfv_A CAPA1, CAPB2, membrane 97.0 0.0024 8E-08 64.7 9.6 66 118-184 191-257 (271)
257 3ea0_A ATPase, para family; al 96.9 0.0013 4.6E-08 64.7 7.4 65 118-184 118-185 (245)
258 3cio_A ETK, tyrosine-protein k 96.8 0.0044 1.5E-07 63.6 10.5 66 118-184 213-279 (299)
259 3b9q_A Chloroplast SRP recepto 96.7 0.0065 2.2E-07 62.5 10.7 123 59-184 99-259 (302)
260 2xj4_A MIPZ; replication, cell 96.6 0.0011 3.8E-08 67.5 3.9 34 118-153 103-136 (286)
261 3q5d_A Atlastin-1; G protein, 96.5 0.0053 1.8E-07 66.5 8.8 26 58-83 65-90 (447)
262 2rcn_A Probable GTPase ENGC; Y 96.4 0.011 3.9E-07 62.1 10.5 84 139-248 127-213 (358)
263 2og2_A Putative signal recogni 96.4 0.0095 3.2E-07 62.8 9.9 124 59-184 156-316 (359)
264 1d1n_A Initiation factor 2; be 96.4 0.0079 2.7E-07 50.8 6.9 82 264-353 8-91 (99)
265 1cp2_A CP2, nitrogenase iron p 96.1 0.018 6.3E-07 57.4 9.7 66 118-183 115-186 (269)
266 2crv_A IF-2MT, translation ini 95.9 0.049 1.7E-06 47.5 10.1 83 264-354 12-100 (120)
267 1bif_A 6-phosphofructo-2-kinas 95.8 0.0054 1.8E-07 67.1 4.2 107 60-178 39-156 (469)
268 2afh_E Nitrogenase iron protei 95.7 0.021 7.2E-07 57.8 8.2 66 118-183 118-189 (289)
269 1nij_A Hypothetical protein YJ 95.5 0.017 5.9E-07 59.7 6.7 26 59-84 3-28 (318)
270 3ug7_A Arsenical pump-driving 95.2 0.21 7.2E-06 52.2 14.0 43 143-185 237-280 (349)
271 1t9h_A YLOQ, probable GTPase E 95.0 0.007 2.4E-07 62.4 1.6 23 61-83 174-196 (307)
272 3zq6_A Putative arsenical pump 94.9 0.3 1E-05 50.4 13.9 41 144-184 223-264 (324)
273 2yv5_A YJEQ protein; hydrolase 94.9 0.036 1.2E-06 56.9 6.7 22 61-83 166-187 (302)
274 2rcn_A Probable GTPase ENGC; Y 94.7 0.013 4.3E-07 61.8 2.8 24 61-84 216-239 (358)
275 2yvu_A Probable adenylyl-sulfa 94.7 0.18 6.3E-06 47.0 10.7 24 60-83 13-36 (186)
276 1ye8_A Protein THEP1, hypothet 94.5 0.022 7.4E-07 53.7 3.7 23 62-84 2-24 (178)
277 1lvg_A Guanylate kinase, GMP k 94.4 0.02 6.9E-07 54.8 3.2 23 61-83 5-27 (198)
278 3zvl_A Bifunctional polynucleo 94.4 0.093 3.2E-06 56.3 8.7 90 59-182 257-346 (416)
279 1kgd_A CASK, peripheral plasma 94.3 0.029 9.8E-07 52.6 4.1 24 61-84 6-29 (180)
280 3io3_A DEHA2D07832P; chaperone 94.2 0.52 1.8E-05 49.2 13.8 42 144-185 232-274 (348)
281 1ihu_A Arsenical pump-driving 93.8 0.16 5.3E-06 57.0 9.5 41 144-184 199-240 (589)
282 3a00_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 52.6 3.2 23 61-83 2-24 (186)
283 1znw_A Guanylate kinase, GMP k 93.7 0.033 1.1E-06 53.5 3.3 25 60-84 20-44 (207)
284 3ney_A 55 kDa erythrocyte memb 93.7 0.046 1.6E-06 52.5 4.2 26 59-84 18-43 (197)
285 3tr0_A Guanylate kinase, GMP k 93.6 0.036 1.2E-06 52.6 3.3 24 61-84 8-31 (205)
286 1zp6_A Hypothetical protein AT 93.6 0.041 1.4E-06 51.6 3.7 24 60-83 9-32 (191)
287 2cvh_A DNA repair and recombin 93.6 0.66 2.3E-05 44.0 12.4 22 61-82 21-42 (220)
288 3asz_A Uridine kinase; cytidin 93.5 0.043 1.5E-06 52.5 3.7 24 60-83 6-29 (211)
289 3c8u_A Fructokinase; YP_612366 93.5 0.045 1.5E-06 52.6 3.7 24 60-83 22-45 (208)
290 1zo1_I IF2, translation initia 93.4 0.24 8.1E-06 54.4 9.7 105 242-354 385-494 (501)
291 1z6g_A Guanylate kinase; struc 93.3 0.042 1.4E-06 53.4 3.3 24 61-84 24-47 (218)
292 1htw_A HI0065; nucleotide-bind 93.3 0.045 1.5E-06 50.6 3.3 24 61-84 34-57 (158)
293 1u0l_A Probable GTPase ENGC; p 93.2 0.057 1.9E-06 55.3 4.2 23 61-83 170-192 (301)
294 1kag_A SKI, shikimate kinase I 93.1 0.052 1.8E-06 50.0 3.5 25 61-85 5-29 (173)
295 4eun_A Thermoresistant glucoki 93.1 0.06 2E-06 51.3 4.0 27 59-85 28-54 (200)
296 3fkq_A NTRC-like two-domain pr 93.1 0.061 2.1E-06 56.7 4.3 36 117-154 258-293 (373)
297 2j41_A Guanylate kinase; GMP, 93.0 0.062 2.1E-06 51.0 3.9 24 60-83 6-29 (207)
298 1knq_A Gluconate kinase; ALFA/ 93.0 0.075 2.6E-06 49.1 4.4 26 60-85 8-33 (175)
299 1s96_A Guanylate kinase, GMP k 93.0 0.051 1.7E-06 53.0 3.3 24 61-84 17-40 (219)
300 2woo_A ATPase GET3; tail-ancho 92.9 0.97 3.3E-05 46.6 13.2 40 144-183 222-262 (329)
301 3kb2_A SPBC2 prophage-derived 92.9 0.062 2.1E-06 49.2 3.6 25 61-85 2-26 (173)
302 3iij_A Coilin-interacting nucl 92.8 0.075 2.6E-06 49.4 4.1 26 60-85 11-36 (180)
303 1np6_A Molybdopterin-guanine d 92.8 0.072 2.4E-06 50.0 3.9 24 60-83 6-29 (174)
304 1ukz_A Uridylate kinase; trans 92.8 0.092 3.2E-06 49.8 4.8 28 58-85 13-40 (203)
305 3tau_A Guanylate kinase, GMP k 92.7 0.072 2.4E-06 51.2 3.9 25 60-84 8-32 (208)
306 1ihu_A Arsenical pump-driving 92.7 0.44 1.5E-05 53.3 11.0 43 142-184 489-532 (589)
307 1ex7_A Guanylate kinase; subst 92.7 0.062 2.1E-06 51.1 3.4 24 61-84 2-25 (186)
308 2p5t_B PEZT; postsegregational 92.7 0.25 8.5E-06 48.9 8.0 27 59-85 31-57 (253)
309 4gp7_A Metallophosphoesterase; 92.7 0.056 1.9E-06 50.2 3.0 21 61-81 10-30 (171)
310 4ido_A Atlastin-1; GTPase, GTP 92.7 0.42 1.4E-05 51.6 10.1 74 58-131 65-152 (457)
311 3lw7_A Adenylate kinase relate 92.6 0.074 2.5E-06 48.5 3.7 24 61-85 2-25 (179)
312 1xjc_A MOBB protein homolog; s 92.6 0.079 2.7E-06 49.5 3.8 24 60-83 4-27 (169)
313 3bos_A Putative DNA replicatio 92.5 0.1 3.6E-06 50.3 4.7 25 60-84 52-76 (242)
314 3tif_A Uncharacterized ABC tra 92.4 0.051 1.8E-06 53.5 2.4 23 61-83 32-54 (235)
315 3vaa_A Shikimate kinase, SK; s 92.3 0.087 3E-06 50.0 3.9 27 60-86 25-51 (199)
316 2f1r_A Molybdopterin-guanine d 92.3 0.043 1.5E-06 51.4 1.6 23 61-83 3-25 (171)
317 2qor_A Guanylate kinase; phosp 92.2 0.081 2.8E-06 50.5 3.6 25 60-84 12-36 (204)
318 2bdt_A BH3686; alpha-beta prot 92.2 0.081 2.8E-06 49.6 3.5 23 61-83 3-25 (189)
319 2pcj_A ABC transporter, lipopr 92.2 0.057 1.9E-06 52.8 2.4 23 61-83 31-53 (224)
320 3izy_P Translation initiation 92.2 0.38 1.3E-05 53.2 9.3 102 241-351 427-534 (537)
321 3t61_A Gluconokinase; PSI-biol 92.1 0.095 3.3E-06 49.8 3.8 26 60-85 18-43 (202)
322 4fcw_A Chaperone protein CLPB; 92.1 0.36 1.2E-05 48.8 8.4 24 61-84 48-71 (311)
323 2onk_A Molybdate/tungstate ABC 92.0 0.072 2.5E-06 52.7 3.0 23 61-83 25-47 (240)
324 3sr0_A Adenylate kinase; phosp 92.0 0.19 6.4E-06 48.4 5.9 25 62-86 2-26 (206)
325 1y63_A LMAJ004144AAA protein; 92.0 0.12 4.2E-06 48.4 4.5 24 60-83 10-33 (184)
326 3b85_A Phosphate starvation-in 91.8 0.077 2.6E-06 51.3 2.9 22 62-83 24-45 (208)
327 3trf_A Shikimate kinase, SK; a 91.8 0.1 3.5E-06 48.6 3.7 27 60-86 5-31 (185)
328 3iqw_A Tail-anchored protein t 91.8 2.3 7.7E-05 44.0 14.3 40 144-183 223-263 (334)
329 2bbw_A Adenylate kinase 4, AK4 91.8 0.098 3.3E-06 51.5 3.7 25 61-85 28-52 (246)
330 2eyu_A Twitching motility prot 91.8 0.092 3.2E-06 52.6 3.5 23 61-83 26-48 (261)
331 2i3b_A HCR-ntpase, human cance 91.8 0.091 3.1E-06 50.0 3.3 23 62-84 3-25 (189)
332 1cke_A CK, MSSA, protein (cyti 91.8 0.1 3.4E-06 50.4 3.7 25 61-85 6-30 (227)
333 2v9p_A Replication protein E1; 91.7 0.093 3.2E-06 53.9 3.4 24 60-83 126-149 (305)
334 2pze_A Cystic fibrosis transme 91.7 0.077 2.6E-06 52.0 2.7 23 61-83 35-57 (229)
335 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.21 7.1E-06 49.7 6.0 24 60-83 4-27 (260)
336 2cbz_A Multidrug resistance-as 91.6 0.076 2.6E-06 52.4 2.7 23 61-83 32-54 (237)
337 2d2e_A SUFC protein; ABC-ATPas 91.6 0.084 2.9E-06 52.5 3.0 23 61-83 30-52 (250)
338 1b0u_A Histidine permease; ABC 91.6 0.073 2.5E-06 53.4 2.5 23 61-83 33-55 (262)
339 2jaq_A Deoxyguanosine kinase; 91.6 0.11 3.9E-06 48.9 3.7 24 62-85 2-25 (205)
340 2if2_A Dephospho-COA kinase; a 91.5 0.11 3.6E-06 49.4 3.5 24 61-85 2-25 (204)
341 3ec2_A DNA replication protein 91.5 0.092 3.1E-06 48.9 3.0 24 60-83 38-61 (180)
342 1g6h_A High-affinity branched- 91.5 0.073 2.5E-06 53.2 2.4 23 61-83 34-56 (257)
343 1mv5_A LMRA, multidrug resista 91.5 0.082 2.8E-06 52.3 2.7 23 61-83 29-51 (243)
344 1ly1_A Polynucleotide kinase; 91.5 0.11 3.9E-06 47.8 3.5 22 61-82 3-24 (181)
345 3gfo_A Cobalt import ATP-bindi 91.5 0.076 2.6E-06 53.7 2.5 23 61-83 35-57 (275)
346 3uie_A Adenylyl-sulfate kinase 91.5 0.13 4.4E-06 48.9 4.0 25 60-84 25-49 (200)
347 4g1u_C Hemin import ATP-bindin 91.4 0.073 2.5E-06 53.5 2.3 23 61-83 38-60 (266)
348 1sgw_A Putative ABC transporte 91.4 0.079 2.7E-06 51.5 2.5 22 62-83 37-58 (214)
349 3umf_A Adenylate kinase; rossm 91.4 0.15 5.1E-06 49.6 4.5 28 58-85 27-54 (217)
350 1qf9_A UMP/CMP kinase, protein 91.4 0.15 5.2E-06 47.4 4.4 26 60-85 6-31 (194)
351 4a1f_A DNAB helicase, replicat 91.4 0.51 1.7E-05 49.1 8.7 23 61-83 47-69 (338)
352 1ji0_A ABC transporter; ATP bi 91.3 0.079 2.7E-06 52.3 2.4 23 61-83 33-55 (240)
353 3aez_A Pantothenate kinase; tr 91.3 0.13 4.4E-06 53.0 4.1 25 59-83 89-113 (312)
354 2ff7_A Alpha-hemolysin translo 91.3 0.085 2.9E-06 52.4 2.7 23 61-83 36-58 (247)
355 1qhx_A CPT, protein (chloramph 91.3 0.13 4.5E-06 47.4 3.8 25 61-85 4-28 (178)
356 2vhj_A Ntpase P4, P4; non- hyd 91.3 0.25 8.7E-06 50.9 6.2 23 61-83 124-146 (331)
357 1nks_A Adenylate kinase; therm 91.2 0.12 4.3E-06 48.0 3.6 25 61-85 2-26 (194)
358 2ghi_A Transport protein; mult 91.2 0.089 3.1E-06 52.7 2.7 23 61-83 47-69 (260)
359 2zu0_C Probable ATP-dependent 91.2 0.1 3.4E-06 52.5 3.0 23 61-83 47-69 (267)
360 3jvv_A Twitching mobility prot 91.1 0.74 2.5E-05 48.2 9.7 23 61-83 124-146 (356)
361 2olj_A Amino acid ABC transpor 91.1 0.088 3E-06 52.9 2.5 23 61-83 51-73 (263)
362 4a74_A DNA repair and recombin 91.0 0.12 3.9E-06 49.8 3.2 23 61-83 26-48 (231)
363 2ehv_A Hypothetical protein PH 91.0 0.11 3.9E-06 50.6 3.2 22 61-82 31-52 (251)
364 2qi9_C Vitamin B12 import ATP- 91.0 0.092 3.2E-06 52.2 2.5 23 61-83 27-49 (249)
365 2rhm_A Putative kinase; P-loop 91.0 0.15 5.2E-06 47.5 3.9 26 60-85 5-30 (193)
366 2qt1_A Nicotinamide riboside k 90.9 0.15 5.1E-06 48.6 3.9 25 60-84 21-45 (207)
367 1vpl_A ABC transporter, ATP-bi 90.9 0.093 3.2E-06 52.4 2.5 23 61-83 42-64 (256)
368 1jjv_A Dephospho-COA kinase; P 90.8 0.12 4.2E-06 49.1 3.2 22 61-82 3-24 (206)
369 3pfi_A Holliday junction ATP-d 90.8 0.73 2.5E-05 47.2 9.3 25 60-84 55-79 (338)
370 2jeo_A Uridine-cytidine kinase 90.8 0.16 5.4E-06 50.0 4.0 26 60-85 25-50 (245)
371 1via_A Shikimate kinase; struc 90.8 0.13 4.6E-06 47.5 3.3 24 62-85 6-29 (175)
372 2ixe_A Antigen peptide transpo 90.7 0.1 3.6E-06 52.5 2.7 23 61-83 46-68 (271)
373 3n70_A Transport activator; si 90.7 0.42 1.4E-05 42.8 6.5 23 61-83 25-47 (145)
374 3fb4_A Adenylate kinase; psych 90.7 0.15 5.1E-06 48.8 3.7 24 62-85 2-25 (216)
375 3cm0_A Adenylate kinase; ATP-b 90.7 0.15 5.2E-06 47.4 3.7 25 61-85 5-29 (186)
376 2yz2_A Putative ABC transporte 90.7 0.099 3.4E-06 52.5 2.4 23 61-83 34-56 (266)
377 3dl0_A Adenylate kinase; phosp 90.6 0.16 5.4E-06 48.7 3.8 24 62-85 2-25 (216)
378 1uf9_A TT1252 protein; P-loop, 90.6 0.17 5.7E-06 47.7 3.9 25 59-83 7-31 (203)
379 2ihy_A ABC transporter, ATP-bi 90.6 0.11 3.7E-06 52.6 2.7 23 61-83 48-70 (279)
380 3lnc_A Guanylate kinase, GMP k 90.6 0.087 3E-06 51.3 1.9 24 60-83 27-51 (231)
381 1kht_A Adenylate kinase; phosp 90.6 0.16 5.5E-06 47.2 3.7 25 61-85 4-28 (192)
382 2nq2_C Hypothetical ABC transp 90.6 0.1 3.5E-06 52.0 2.4 23 61-83 32-54 (253)
383 1tev_A UMP-CMP kinase; ploop, 90.6 0.17 5.8E-06 47.2 3.8 25 61-85 4-28 (196)
384 2c95_A Adenylate kinase 1; tra 90.5 0.18 6.2E-06 47.2 4.0 26 60-85 9-34 (196)
385 1fnn_A CDC6P, cell division co 90.5 0.88 3E-05 47.2 9.7 24 61-84 45-68 (389)
386 3tqc_A Pantothenate kinase; bi 90.5 0.18 6.2E-06 52.1 4.2 26 58-83 90-115 (321)
387 2axn_A 6-phosphofructo-2-kinas 90.4 0.16 5.6E-06 56.0 4.1 40 143-182 117-156 (520)
388 1odf_A YGR205W, hypothetical 3 90.3 0.2 6.7E-06 51.0 4.3 25 59-83 30-54 (290)
389 3fgn_A Dethiobiotin synthetase 90.3 1.3 4.6E-05 43.8 10.3 65 118-182 126-197 (251)
390 2kjq_A DNAA-related protein; s 90.3 0.13 4.6E-06 46.7 2.8 24 60-83 36-59 (149)
391 4e22_A Cytidylate kinase; P-lo 90.3 0.2 6.7E-06 49.7 4.2 26 60-85 27-52 (252)
392 2v1u_A Cell division control p 90.2 0.69 2.4E-05 47.9 8.6 25 59-83 43-67 (387)
393 1uj2_A Uridine-cytidine kinase 90.2 0.19 6.5E-06 49.7 4.0 27 59-85 21-47 (252)
394 2pt7_A CAG-ALFA; ATPase, prote 90.2 0.85 2.9E-05 47.1 9.2 24 61-84 172-195 (330)
395 1rz3_A Hypothetical protein rb 90.1 0.21 7.1E-06 47.5 4.1 24 60-83 22-45 (201)
396 2gza_A Type IV secretion syste 90.1 0.12 4.2E-06 54.2 2.7 23 61-83 176-198 (361)
397 3kta_A Chromosome segregation 90.1 0.16 5.6E-06 47.1 3.3 24 62-85 28-51 (182)
398 2cdn_A Adenylate kinase; phosp 90.0 0.23 8E-06 46.9 4.4 26 60-85 20-45 (201)
399 2b8t_A Thymidine kinase; deoxy 89.9 0.23 7.8E-06 48.5 4.2 40 145-184 90-129 (223)
400 2plr_A DTMP kinase, probable t 89.9 0.21 7.3E-06 47.2 3.9 25 61-85 5-29 (213)
401 1nn5_A Similar to deoxythymidy 89.8 0.22 7.5E-06 47.3 4.0 24 60-83 9-32 (215)
402 2pjz_A Hypothetical protein ST 89.8 0.14 4.9E-06 51.3 2.7 22 62-83 32-53 (263)
403 1zuh_A Shikimate kinase; alpha 89.8 0.21 7.1E-06 45.7 3.7 28 59-86 6-33 (168)
404 3nh6_A ATP-binding cassette SU 89.7 0.098 3.3E-06 53.7 1.5 23 61-83 81-103 (306)
405 1lw7_A Transcriptional regulat 89.7 0.15 5.3E-06 53.4 3.1 25 60-84 170-194 (365)
406 1sq5_A Pantothenate kinase; P- 89.7 0.21 7.3E-06 51.1 4.0 25 59-83 79-103 (308)
407 2vp4_A Deoxynucleoside kinase; 89.7 0.16 5.5E-06 49.5 3.0 26 58-83 18-43 (230)
408 3tui_C Methionine import ATP-b 89.7 0.15 5.3E-06 53.5 3.0 23 61-83 55-77 (366)
409 2bwj_A Adenylate kinase 5; pho 89.7 0.21 7E-06 46.9 3.7 25 61-85 13-37 (199)
410 1zd8_A GTP:AMP phosphotransfer 89.7 0.21 7.3E-06 48.3 3.9 26 60-85 7-32 (227)
411 2vli_A Antibiotic resistance p 89.7 0.17 5.7E-06 46.9 2.9 25 61-85 6-30 (183)
412 1aky_A Adenylate kinase; ATP:A 89.7 0.23 7.7E-06 47.8 4.0 26 60-85 4-29 (220)
413 2bbs_A Cystic fibrosis transme 89.6 0.14 4.9E-06 52.1 2.6 23 61-83 65-87 (290)
414 2chg_A Replication factor C sm 89.6 0.66 2.3E-05 43.5 7.2 23 61-83 39-61 (226)
415 2v54_A DTMP kinase, thymidylat 89.6 0.23 7.8E-06 46.8 3.9 23 61-83 5-27 (204)
416 2ewv_A Twitching motility prot 89.6 0.19 6.5E-06 53.0 3.6 24 60-83 136-159 (372)
417 3fvq_A Fe(3+) IONS import ATP- 89.5 0.16 5.4E-06 53.4 2.9 23 61-83 31-53 (359)
418 1sxj_A Activator 1 95 kDa subu 89.5 1 3.6E-05 49.4 9.6 26 60-85 77-102 (516)
419 1ak2_A Adenylate kinase isoenz 89.5 0.25 8.4E-06 48.2 4.1 26 60-85 16-41 (233)
420 1byi_A Dethiobiotin synthase; 89.5 1.4 4.7E-05 42.1 9.5 67 118-184 108-180 (224)
421 1zak_A Adenylate kinase; ATP:A 89.4 0.22 7.5E-06 48.0 3.7 25 61-85 6-30 (222)
422 2pt5_A Shikimate kinase, SK; a 89.3 0.24 8.1E-06 45.2 3.7 24 62-85 2-25 (168)
423 1e6c_A Shikimate kinase; phosp 89.3 0.21 7.3E-06 45.7 3.4 25 61-85 3-27 (173)
424 1hqc_A RUVB; extended AAA-ATPa 89.3 1.3 4.4E-05 44.8 9.7 24 61-84 39-62 (324)
425 3tlx_A Adenylate kinase 2; str 89.2 0.26 8.9E-06 48.5 4.1 26 60-85 29-54 (243)
426 2iyv_A Shikimate kinase, SK; t 89.2 0.21 7E-06 46.5 3.2 26 61-86 3-28 (184)
427 1z47_A CYSA, putative ABC-tran 89.1 0.18 6.1E-06 52.9 3.0 23 61-83 42-64 (355)
428 1jbk_A CLPB protein; beta barr 89.1 0.27 9.4E-06 45.0 4.0 24 60-83 43-66 (195)
429 1gtv_A TMK, thymidylate kinase 89.1 0.12 4E-06 49.3 1.4 22 62-83 2-23 (214)
430 2yyz_A Sugar ABC transporter, 89.0 0.18 6.2E-06 52.9 3.0 23 61-83 30-52 (359)
431 2wwf_A Thymidilate kinase, put 89.0 0.26 9E-06 46.7 3.9 25 60-84 10-34 (212)
432 1gvn_B Zeta; postsegregational 88.9 0.27 9.2E-06 49.8 4.1 26 59-84 32-57 (287)
433 2it1_A 362AA long hypothetical 88.9 0.19 6.5E-06 52.8 3.0 23 61-83 30-52 (362)
434 2ze6_A Isopentenyl transferase 88.9 0.25 8.5E-06 49.0 3.7 26 61-86 2-27 (253)
435 1e4v_A Adenylate kinase; trans 88.9 0.25 8.5E-06 47.3 3.6 24 62-85 2-25 (214)
436 3rlf_A Maltose/maltodextrin im 88.8 0.19 6.7E-06 53.1 3.0 23 61-83 30-52 (381)
437 3hr8_A Protein RECA; alpha and 88.8 0.22 7.4E-06 52.2 3.3 24 60-83 61-84 (356)
438 2oap_1 GSPE-2, type II secreti 88.7 0.17 5.7E-06 55.8 2.5 23 61-83 261-283 (511)
439 2pbr_A DTMP kinase, thymidylat 88.7 0.27 9.2E-06 45.8 3.6 23 62-84 2-24 (195)
440 1sxj_E Activator 1 40 kDa subu 88.7 1.6 5.6E-05 44.7 10.1 24 60-83 36-59 (354)
441 1v43_A Sugar-binding transport 88.7 0.2 6.9E-06 52.8 3.0 23 61-83 38-60 (372)
442 1g29_1 MALK, maltose transport 88.7 0.2 6.8E-06 52.9 3.0 23 61-83 30-52 (372)
443 1f2t_A RAD50 ABC-ATPase; DNA d 88.7 0.25 8.7E-06 44.8 3.3 23 62-84 25-47 (149)
444 3nwj_A ATSK2; P loop, shikimat 88.4 0.25 8.5E-06 49.1 3.3 25 61-85 49-73 (250)
445 2z0h_A DTMP kinase, thymidylat 88.3 0.27 9.3E-06 45.9 3.4 22 62-83 2-23 (197)
446 2x8a_A Nuclear valosin-contain 88.3 0.27 9.2E-06 49.5 3.5 24 61-84 45-68 (274)
447 1ixz_A ATP-dependent metallopr 88.3 0.3 1E-05 48.0 3.8 23 61-83 50-72 (254)
448 3fwy_A Light-independent proto 88.3 0.8 2.7E-05 47.0 7.2 65 118-183 163-232 (314)
449 2zr9_A Protein RECA, recombina 88.1 0.24 8.3E-06 51.7 3.2 24 60-83 61-84 (349)
450 2pez_A Bifunctional 3'-phospho 88.1 0.35 1.2E-05 44.8 3.9 24 60-83 5-28 (179)
451 1p9r_A General secretion pathw 88.1 0.27 9.4E-06 52.7 3.6 24 61-84 168-191 (418)
452 1q57_A DNA primase/helicase; d 87.9 0.25 8.7E-06 54.1 3.3 25 61-85 243-267 (503)
453 2r8r_A Sensor protein; KDPD, P 87.9 0.99 3.4E-05 44.0 7.1 24 60-83 6-29 (228)
454 2w0m_A SSO2452; RECA, SSPF, un 87.9 0.32 1.1E-05 46.6 3.6 23 61-83 24-46 (235)
455 3d31_A Sulfate/molybdate ABC t 87.9 0.17 6E-06 52.8 1.9 23 61-83 27-49 (348)
456 1vht_A Dephospho-COA kinase; s 87.8 0.32 1.1E-05 46.6 3.6 22 61-82 5-26 (218)
457 3gd7_A Fusion complex of cysti 87.6 0.25 8.6E-06 52.4 2.9 23 61-83 48-70 (390)
458 3syl_A Protein CBBX; photosynt 87.2 0.92 3.2E-05 45.7 6.9 26 59-84 66-91 (309)
459 2grj_A Dephospho-COA kinase; T 87.2 0.41 1.4E-05 45.5 3.8 28 58-85 10-37 (192)
460 2xb4_A Adenylate kinase; ATP-b 87.1 0.37 1.3E-05 46.6 3.7 24 62-85 2-25 (223)
461 3be4_A Adenylate kinase; malar 87.0 0.38 1.3E-05 46.2 3.6 25 61-85 6-30 (217)
462 3bh0_A DNAB-like replicative h 87.0 0.26 8.8E-06 50.7 2.5 24 61-84 69-92 (315)
463 2p65_A Hypothetical protein PF 86.9 0.34 1.1E-05 44.4 3.1 24 60-83 43-66 (187)
464 3r20_A Cytidylate kinase; stru 86.9 0.41 1.4E-05 47.0 3.8 26 60-85 9-34 (233)
465 1iy2_A ATP-dependent metallopr 86.9 0.38 1.3E-05 48.1 3.7 24 61-84 74-97 (278)
466 1q3t_A Cytidylate kinase; nucl 86.9 0.45 1.5E-05 46.4 4.1 27 59-85 15-41 (236)
467 1oxx_K GLCV, glucose, ABC tran 86.8 0.17 5.9E-06 52.9 1.1 23 61-83 32-54 (353)
468 1m7g_A Adenylylsulfate kinase; 86.7 0.45 1.5E-05 45.5 3.9 24 60-83 25-48 (211)
469 3qf7_A RAD50; ABC-ATPase, ATPa 86.6 0.35 1.2E-05 50.8 3.3 23 62-84 25-47 (365)
470 3io5_A Recombination and repai 86.6 2.6 9E-05 43.3 9.7 22 62-83 30-51 (333)
471 2f6r_A COA synthase, bifunctio 86.6 0.47 1.6E-05 47.8 4.1 24 59-82 74-97 (281)
472 1in4_A RUVB, holliday junction 86.5 0.4 1.4E-05 49.5 3.7 25 61-85 52-76 (334)
473 3bgw_A DNAB-like replicative h 86.4 0.36 1.2E-05 52.1 3.4 24 61-84 198-221 (444)
474 2npi_A Protein CLP1; CLP1-PCF1 86.4 0.34 1.2E-05 52.6 3.2 23 61-83 139-161 (460)
475 1p5z_B DCK, deoxycytidine kina 86.4 0.24 8.3E-06 49.2 1.9 25 59-83 23-47 (263)
476 2obl_A ESCN; ATPase, hydrolase 86.4 0.4 1.4E-05 50.0 3.6 23 61-83 72-94 (347)
477 2w58_A DNAI, primosome compone 86.4 0.44 1.5E-05 44.9 3.6 24 61-84 55-78 (202)
478 1lv7_A FTSH; alpha/beta domain 86.2 0.44 1.5E-05 46.9 3.7 25 60-84 45-69 (257)
479 1u94_A RECA protein, recombina 86.1 0.39 1.3E-05 50.3 3.3 24 60-83 63-86 (356)
480 3euj_A Chromosome partition pr 86.1 0.38 1.3E-05 52.5 3.3 24 61-84 30-53 (483)
481 1cr0_A DNA primase/helicase; R 86.1 0.4 1.4E-05 48.4 3.4 23 61-83 36-58 (296)
482 3lh2_S 4E10_1VI7A_S0_002_N (T8 85.8 0.5 1.7E-05 37.6 3.1 51 469-522 19-70 (76)
483 1xwi_A SKD1 protein; VPS4B, AA 85.7 2.2 7.6E-05 43.6 8.9 25 60-84 45-69 (322)
484 4eaq_A DTMP kinase, thymidylat 85.7 0.61 2.1E-05 45.4 4.4 27 59-85 25-51 (229)
485 3ake_A Cytidylate kinase; CMP 85.7 0.5 1.7E-05 44.5 3.6 24 62-85 4-27 (208)
486 2z43_A DNA repair and recombin 85.4 2.7 9.2E-05 43.0 9.3 24 60-83 107-130 (324)
487 2bjv_A PSP operon transcriptio 85.4 2.2 7.5E-05 41.9 8.4 25 61-85 30-54 (265)
488 1n0w_A DNA repair protein RAD5 85.1 0.49 1.7E-05 45.8 3.3 23 61-83 25-47 (243)
489 1svm_A Large T antigen; AAA+ f 84.8 0.62 2.1E-05 49.2 4.2 25 60-84 169-193 (377)
490 2dpy_A FLII, flagellum-specifi 84.8 0.52 1.8E-05 50.8 3.6 23 61-83 158-180 (438)
491 1xp8_A RECA protein, recombina 84.6 0.51 1.7E-05 49.6 3.4 24 60-83 74-97 (366)
492 4edh_A DTMP kinase, thymidylat 84.6 2.1 7.2E-05 41.1 7.6 24 60-83 6-29 (213)
493 3b5x_A Lipid A export ATP-bind 84.6 0.44 1.5E-05 53.3 3.1 24 60-83 369-392 (582)
494 1v5w_A DMC1, meiotic recombina 84.5 5.3 0.00018 41.2 11.2 24 60-83 122-145 (343)
495 1yqt_A RNAse L inhibitor; ATP- 84.3 0.49 1.7E-05 52.5 3.2 24 60-83 47-70 (538)
496 3b60_A Lipid A export ATP-bind 84.2 0.41 1.4E-05 53.5 2.7 23 61-83 370-392 (582)
497 3cmu_A Protein RECA, recombina 83.9 2 6.8E-05 54.5 8.7 27 59-85 1426-1452(2050)
498 1g7s_A Translation initiation 83.9 3.9 0.00013 45.7 10.4 81 261-353 462-549 (594)
499 2ga8_A Hypothetical 39.9 kDa p 83.7 0.85 2.9E-05 47.6 4.5 26 59-84 23-48 (359)
500 2qz4_A Paraplegin; AAA+, SPG7, 83.6 0.82 2.8E-05 44.7 4.3 26 59-84 38-63 (262)
No 1
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=8.2e-100 Score=786.01 Aligned_cols=300 Identities=40% Similarity=0.657 Sum_probs=254.9
Q ss_pred EecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCc
Q 006610 337 SVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAE 415 (639)
Q Consensus 337 ~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~ 415 (639)
+++||+++.+|||||+.+++.+||++++++|+++|+|.|+++||+|++|+++|+++|.++|.|++++||+|+|+++ +++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998 778
Q ss_pred eEEEEecChhHHHHHHHHHHHcCcEEEEeCCeEEEEeecCceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc-
Q 006610 416 TYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW- 490 (639)
Q Consensus 416 ~~~v~g~GelhL~vl~e~Lrreg~ev~vs~P~V~yrE~~g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~- 490 (639)
+|+|+|||||||+|++|+|||+|+|+.+++|+|+|||.+|+++|||++++|+| +|+||++|++|||++ .+|+
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i---~~m~~ 158 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGEL---XDMAP 158 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEEE
T ss_pred eEEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccc---cCceE
Confidence 89999999999999999999889999999999999999999999999999999 999999999999999 9998
Q ss_pred -C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceeec-cCCCCCccceeEEEecCcchhhhhccCcccccccc
Q 006610 491 -G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH-RGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILF 567 (639)
Q Consensus 491 -~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~-~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~ 567 (639)
+ ++++|+|.+|+++|+||+++|+|+|+|+|+|++.|+||+|+ ||+++.|.||+|||+++|++|+|||++||+||+||
T Consensus 159 ~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~~f 238 (332)
T 3e3x_A 159 DGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLF 238 (332)
T ss_dssp CSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCCCCCEEEESSCEECCHHHHHHHTTSEEES
T ss_pred CCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccccccCceEEEcCCCcEeHhhhhhHHhhceEE
Confidence 3 79999999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred ccCCCccccceEEeecCCCCCeeeeccccccccccccCCCCcceeeCCCccCCHHHHHccccCCeeEEecCC
Q 006610 568 VPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGKDENVKLTPPRLMTLEEAIGYVASDELIEASCT 639 (639)
Q Consensus 568 ~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~tp~ 639 (639)
|+||++||+|||||||+|+|||+|||||+||||||||||+|++++|+|||.||||||||||+|||||||||.
T Consensus 239 v~pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp~ 310 (332)
T 3e3x_A 239 IGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTPE 310 (332)
T ss_dssp CCTTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECSS
T ss_pred ecCCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999994
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.4e-88 Score=786.83 Aligned_cols=445 Identities=28% Similarity=0.399 Sum_probs=378.3
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCC------CCccccccccccccccceeEeeeeEEEeec-------CceEEE
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD------IPHERAMDSISLERERGITIASKVTGISWR-------ENELNM 123 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~------~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-------~~~i~i 123 (639)
.+++|||+|+||+|||||||+++||..+|.. ....++||++++|++|||||.++..++.|+ ++.|||
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 4689999999999999999999999998741 223689999999999999999999999996 589999
Q ss_pred EeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 124 VDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 124 IDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
||||||.||.+|+.++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++.+++.. +.+++.+.+.
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~---~~~ei~~~l~ 166 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLR---VVEQIKKRLG 166 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHH---HHHHHHHHHC
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHH---HHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988744 3344433221
Q ss_pred h----------------------------------------------------------------------------cCC
Q 006610 204 N----------------------------------------------------------------------------LGA 207 (639)
Q Consensus 204 ~----------------------------------------------------------------------------~g~ 207 (639)
. ...
T Consensus 167 ~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~ 246 (709)
T 4fn5_A 167 HTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246 (709)
T ss_dssp SCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCC
T ss_pred cceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCc
Confidence 0 000
Q ss_pred CC------------ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC-------------------
Q 006610 208 TD------------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK------------------- 256 (639)
Q Consensus 208 ~~------------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~------------------- 256 (639)
.. ...-+|++++||+++. |+..||++|++++|+|.
T Consensus 247 ~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~--------------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 312 (709)
T 4fn5_A 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKNK--------------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312 (709)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTTB--------------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEE
T ss_pred cHHHHHHHHHHhhhhceeeeeeeeecccCC--------------chHHHHHHHHhhCCCCcccccccccCCccccccccc
Confidence 00 0012689999999998 99999999999999994
Q ss_pred -CCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCce
Q 006610 257 -ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDI 335 (639)
Q Consensus 257 -~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdI 335 (639)
+++++||.++|||+.+|++.|+++++|||||+|++||+|++...+ +.++|.+|+.++|.+++++++|.||||
T Consensus 313 ~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI 385 (709)
T 4fn5_A 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKG-------KKERVGRMVQMHANQREEIKEVRAGDI 385 (709)
T ss_dssp CSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTC-------CCCBCCCEECCCSSCCCEESEECTTCE
T ss_pred cCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCC-------cEEeecceeEeecceeeEeeeecCCCe
Confidence 467899999999999999999999999999999999999887532 457899999999999999999999999
Q ss_pred EEecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CC
Q 006610 336 ISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MA 414 (639)
Q Consensus 336 v~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~ 414 (639)
|+|.|++++.+|||||+.+.+..++++.+++|+++++++|+++ .|..||.++|+|+.++||+|+++.+ ++
T Consensus 386 v~i~Gl~~~~~gdTl~~~~~~~~~~~~~~~~Pvv~vavep~~~---------~d~~kL~~~L~kL~~eDPsl~v~~~eet 456 (709)
T 4fn5_A 386 AALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISVAVEPKTK---------ADQEKMGIALGKLAQEDPSFRVKTDEES 456 (709)
T ss_dssp EEECSCSSCCTTCEEECSSSCCBCC----CCCSEEEEECBSST---------TTHHHHHHHHHHHHHHCTTCEEEEETTT
T ss_pred eeecCCCcCccCCEecCCCccccCCCCCCCCcceEEEEecCCH---------HHhhhhHHHHHHHHHhCCeEEEEEecCC
Confidence 9999999999999999999999999999999999999999874 5889999999999999999999976 78
Q ss_pred ceEEEEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ecC-------------------------------------
Q 006610 415 ETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG------------------------------------- 455 (639)
Q Consensus 415 ~~~~v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g------------------------------------- 455 (639)
++++|+|+|||||+|++++|||+ |+|+.+++|+|+||| +.+
T Consensus 457 ge~vi~g~GELHLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~ 536 (709)
T 4fn5_A 457 GQTIISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNI 536 (709)
T ss_dssp TEEEEEESCHHHHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCB
T ss_pred CcEEEEEECHHHHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCC
Confidence 88999999999999999999987 999999999999999 310
Q ss_pred --------------------------------------------------------------------------------
Q 006610 456 -------------------------------------------------------------------------------- 455 (639)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (639)
T Consensus 537 ~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p 616 (709)
T 4fn5_A 537 TEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGG 616 (709)
T ss_dssp CCEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCC
T ss_pred cCceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCC
Confidence
Q ss_pred ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccce
Q 006610 456 VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKY 529 (639)
Q Consensus 456 ~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y 529 (639)
++||||+.++|.| +|+||++|++|||++ ++|+ ++...|+|.+|++|++||.++||++|+|+|.|++.|+||
T Consensus 617 ~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i---~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y 693 (709)
T 4fn5_A 617 KVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLI---QGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKY 693 (709)
T ss_dssp EEEEEEEEEEEEEETTTHHHHHHHHGGGTCEE---EEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEE
T ss_pred EEECceEEEEEEECHHHHHHHHHHHHhcCCEE---eceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCc
Confidence 2579999999999 999999999999999 9998 578889999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 006610 530 EKHRGLLG 537 (639)
Q Consensus 530 ~~~~g~~~ 537 (639)
+++||++.
T Consensus 694 ~~vp~~~~ 701 (709)
T 4fn5_A 694 AEAPSNIV 701 (709)
T ss_dssp EECCHHHH
T ss_pred ccCCcCHH
Confidence 99998753
No 3
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=7.1e-90 Score=787.90 Aligned_cols=442 Identities=24% Similarity=0.287 Sum_probs=398.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
+||||+|+||+|||||||+++||+.+|... ...++||++++|++|||||.++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 589999999999999999999999999643 23579999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH---------
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA--------- 203 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~--------- 203 (639)
..|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++++++.. +.+++.+.+.
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~---~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLST---VYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHH---HHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHH---HHHHHHHHhCCCcccccee
Confidence 9999999999999999999999999999999999999999999999999999998744 3333322211
Q ss_pred ---------------------------------hcCCCCc------------cccccEEecccccCCCCCcccCCCcccc
Q 006610 204 ---------------------------------NLGATDE------------QLDFPVLYASAKEGWASSTFTKDPPADV 238 (639)
Q Consensus 204 ---------------------------------~~g~~~~------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~ 238 (639)
....... ..-+|++++||+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~------------- 224 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI------------- 224 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC-------------
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC-------------
Confidence 0000000 012799999999999
Q ss_pred cchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEe
Q 006610 239 RNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMK 318 (639)
Q Consensus 239 ~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~ 318 (639)
|+++||++|++++|+|..+.++||+++|||+.+|++.|+++++|||||+|+.||.|++.+. .+.+|.+++.
T Consensus 225 -Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--------~~~~v~~l~~ 295 (638)
T 3j25_A 225 -GIDNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK--------EKIKVTEMYT 295 (638)
T ss_dssp -SHHHHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC--------CCSSBCCCCS
T ss_pred -CchhHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC--------cceeEEeeec
Confidence 9999999999999999998899999999999999999999999999999999999987642 3468999999
Q ss_pred eeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhh
Q 006610 319 KKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLM 398 (639)
Q Consensus 319 ~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~ 398 (639)
+.|.+++++++|.|||||+|.| ..+.+|||+++...+..++++.+|+|++++++.|.+. .|..||.++|.
T Consensus 296 ~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~~---------~d~~kL~~aL~ 365 (638)
T 3j25_A 296 SINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKP---------EQREMLLDALL 365 (638)
T ss_dssp SCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCSH---------HHHHHHHHHHH
T ss_pred ccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCCh---------HHHHHHHHHHH
Confidence 9999999999999999999988 5788999999988888888999999999999998763 68899999999
Q ss_pred hhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ecC--------------------
Q 006610 399 SEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG-------------------- 455 (639)
Q Consensus 399 k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g-------------------- 455 (639)
|+.++||+|+++.+ ++++++|+|||||||+|++++|||+ |+|+.+++|+|+||| +.+
T Consensus 366 kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~ 445 (638)
T 3j25_A 366 EISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIG 445 (638)
T ss_dssp HHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCC
T ss_pred HHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEE
Confidence 99999999999987 7788999999999999999999987 999999999999998 210
Q ss_pred --------------------------------------------------------------------------------
Q 006610 456 -------------------------------------------------------------------------------- 455 (639)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (639)
T Consensus 446 ~~~eP~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~ 525 (638)
T 3j25_A 446 LSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQ 525 (638)
T ss_dssp EECCCCCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHH
T ss_pred EEEecccCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHH
Confidence
Q ss_pred -------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEe
Q 006610 456 -------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFM 522 (639)
Q Consensus 456 -------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~ 522 (639)
++||||++++|.| +|+||++|++|||++ ++|+ +++++|+|.+|++||+||+++||++|+|+|.|
T Consensus 526 a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~ 602 (638)
T 3j25_A 526 VLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANI---VDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVC 602 (638)
T ss_dssp HHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCC---CCCCCCTTEEEEECCCSSCCHHHHHHHHHHTTTTCCEE
T ss_pred HHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEE---eCeEecCCeEEEEEEECHHHhhCHHHHHHhhCCCcEEE
Confidence 1479999999999 999999999999999 9999 68999999999999999999999999999999
Q ss_pred eeeccceeeccCCCCC
Q 006610 523 HRAFLKYEKHRGLLGN 538 (639)
Q Consensus 523 ~~~f~~y~~~~g~~~~ 538 (639)
++.|+||+++||++..
T Consensus 603 ~~~f~~y~~vpgdp~~ 618 (638)
T 3j25_A 603 LTELKGYHVTTGEPVC 618 (638)
T ss_dssp ECCCCCCCCCCSCCSC
T ss_pred EEEECceEECCCCccc
Confidence 9999999999998753
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.2e-81 Score=722.59 Aligned_cols=444 Identities=30% Similarity=0.410 Sum_probs=399.0
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecC-------ceEEE
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRE-------NELNM 123 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-------~~i~i 123 (639)
.+++|||+|+||+|||||||+++|+..+|... ...+++|+.+.|+++|+|+......+.|++ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 46789999999999999999999998876422 135789999999999999999999999988 99999
Q ss_pred EeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 124 VDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 124 IDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
||||||.||..++.++++.+|++|+|||+++|++.||..+|+.+...++|+++|+||+|+..+++.+ +.+++.+.+.
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~---~~~~l~~~l~ 163 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLK---VVNQIKTRLG 163 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHH---HHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999998876533 3333333221
Q ss_pred hc---------------------------------CCC----------------------------C-------------
Q 006610 204 NL---------------------------------GAT----------------------------D------------- 209 (639)
Q Consensus 204 ~~---------------------------------g~~----------------------------~------------- 209 (639)
.. |.. +
T Consensus 164 ~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l 243 (704)
T 2rdo_7 164 ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL 243 (704)
T ss_pred CCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCC
Confidence 10 000 0
Q ss_pred --------------ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC------------------
Q 006610 210 --------------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA------------------ 257 (639)
Q Consensus 210 --------------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~------------------ 257 (639)
....+|++++||+++. |++.||++|++++|+|..
T Consensus 244 ~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~--------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 309 (704)
T 2rdo_7 244 TEAEIKGALRQRVLNNEIILVTCGSAFKNK--------------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAER 309 (704)
T ss_pred CHHHHHHHHHHHHHhCCeeEEEEeecccCc--------------cHHHHHHHHHHHCCChhhcccccccCCccccccccc
Confidence 0012799999999998 999999999999999954
Q ss_pred --CCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCce
Q 006610 258 --SLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDI 335 (639)
Q Consensus 258 --~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdI 335 (639)
++++||+++|||+.+|++.|+++++|||||+|++||.|++.+.+ +.++|.+|+.++|.+++++++|.||||
T Consensus 310 ~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI 382 (704)
T 2rdo_7 310 HASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKA-------ARERFGRIVQMHANKREEIKEVRAGDI 382 (704)
T ss_pred ccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCC-------cEEEeceEEEEeCCCceEcceeCCCCE
Confidence 25789999999999999999999999999999999999987542 568999999999999999999999999
Q ss_pred EEecCCCCCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CC
Q 006610 336 ISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MA 414 (639)
Q Consensus 336 v~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~ 414 (639)
++|.|++++.+|||||+.+.+.+++++++++|++++++.|+++ .|..||.++|+|+.++||+|+++.+ ++
T Consensus 383 v~i~gl~~~~~GdTl~~~~~~~~l~~~~~~~Pv~~~ai~p~~~---------~d~~kl~~~L~~L~~eDp~l~v~~~~et 453 (704)
T 2rdo_7 383 AAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTK---------ADQEKMGLALGRLAKEDPSFRVWTDEES 453 (704)
T ss_pred EEEeCcccCccCCEEeCCCcccccCCCCCCCceEEEEEEECCh---------HHHHHHHHHHHHHHhhCCEEEEEEcCCC
Confidence 9999999999999999988888999999999999999999875 4789999999999999999999987 77
Q ss_pred ceEEEEecChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-e---c--------------------------------C--
Q 006610 415 ETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E---N--------------------------------G-- 455 (639)
Q Consensus 415 ~~~~v~g~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~---~--------------------------------g-- 455 (639)
++++|+|||||||+|++++|||+ |+++.+++|+|+||| + . |
T Consensus 454 ge~il~g~GelhLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g 533 (704)
T 2rdo_7 454 NQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKG 533 (704)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCC
Confidence 88999999999999999999986 999999999999999 3 1 1
Q ss_pred -----------------------------------------------------------------------------cee
Q 006610 456 -----------------------------------------------------------------------------VKL 458 (639)
Q Consensus 456 -----------------------------------------------------------------------------~~~ 458 (639)
++|
T Consensus 534 ~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~ll 613 (704)
T 2rdo_7 534 YEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLL 613 (704)
T ss_pred cEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeee
Confidence 378
Q ss_pred eeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeec
Q 006610 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
|||+.++|.| +|+||++|++|||++ ++|+ +++++|+|.+|++||+||+++||++|+|+|.|++.|+||+++
T Consensus 614 EPi~~~~i~~p~~~~G~v~~~l~~rrG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~ 690 (704)
T 2rdo_7 614 EPIMKVEVETPEENTGDVIGDLSRRRGML---KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEA 690 (704)
T ss_pred eeEEEEEEEeCHHHHhHHHHHHHhCCceE---eCceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceEC
Confidence 9999999999 999999999999999 9999 689999999999999999999999999999999999999999
Q ss_pred cCCC
Q 006610 533 RGLL 536 (639)
Q Consensus 533 ~g~~ 536 (639)
+|++
T Consensus 691 ~~~~ 694 (704)
T 2rdo_7 691 PSNV 694 (704)
T ss_pred CccH
Confidence 9885
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.8e-81 Score=720.60 Aligned_cols=445 Identities=29% Similarity=0.431 Sum_probs=382.6
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..++++||+|+||+|||||||+++|+..++... ...+++|+.+.|+++|+|+......+.|++++++|||||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456789999999999999999999998776431 23478899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc----
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL---- 205 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~---- 205 (639)
.+|..++.++++.+|++|+|+|+.++++.++..+|+.+.+.++|+|+|+||+|+..++.. ++.+++.+.+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~---~~~~~l~~~l~~~~~~~ 162 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFE---YSVSTLHDRLQANAAPI 162 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHH---HHHHHHHHHHCCCEEES
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchH---HHHHHHHHHhCCCceeE
Confidence 999999999999999999999999999999999999999999999999999999877653 3344444433110
Q ss_pred ----------------------CCC-C---------------------------------c-------------------
Q 006610 206 ----------------------GAT-D---------------------------------E------------------- 210 (639)
Q Consensus 206 ----------------------g~~-~---------------------------------~------------------- 210 (639)
.++ + +
T Consensus 163 ~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 163 QLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred EeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 000 0 0
Q ss_pred --------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC--------------------CCCCC
Q 006610 211 --------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SLDAP 262 (639)
Q Consensus 211 --------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~--------------------~~~~p 262 (639)
..-+|++++||++|. |++.||++|++++|+|.. ++++|
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~--------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p 308 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNK--------------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAE 308 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTB--------------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSC
T ss_pred HHHHHHHhCCeeeEEEeecccCc--------------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCc
Confidence 012699999999998 999999999999999954 36789
Q ss_pred ceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC
Q 006610 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (639)
Q Consensus 263 ~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 342 (639)
|+++|||+.+|++.|+++++|||||+|++||.|++... + +.+||.+|+.++|.+++++++|.||||++|.|++
T Consensus 309 ~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~---~----~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 381 (693)
T 2xex_A 309 FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK---G----KRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLK 381 (693)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTT---T----EEEEECCEEEECSSCEEECSEEETTCEEEEESCS
T ss_pred eEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCC---C----ceEEeceEEEEeCCCceEccccCcCCEEEEeCcc
Confidence 99999999999999999999999999999999998743 2 6789999999999999999999999999999999
Q ss_pred CCCcCCeeeecCCCcCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEe
Q 006610 343 KPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQG 421 (639)
Q Consensus 343 ~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g 421 (639)
++.+|||||+.+.+.+++++++++|++++++.|+++ .|..||.++|+|+.++||+|+++.+ ++++++|+|
T Consensus 382 ~~~~GdTl~~~~~~~~~~~~~~~~Pv~~~av~p~~~---------~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g 452 (693)
T 2xex_A 382 DTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSK---------ADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGG 452 (693)
T ss_dssp SCCTTCEEEETTCCEECCCCSSCSCSEEEEEEESSH---------HHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEE
T ss_pred cCccCCEEecCCCccccCCcCCCCceEEEEEEeCCc---------hhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEe
Confidence 999999999998888999999999999999999874 5889999999999999999999987 778899999
Q ss_pred cChhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ecC--------------------------------------------
Q 006610 422 RGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG-------------------------------------------- 455 (639)
Q Consensus 422 ~GelhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g-------------------------------------------- 455 (639)
||||||+|+++||||+ |+++.+++|+|+||| +.+
T Consensus 453 ~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~ 532 (693)
T 2xex_A 453 MGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGV 532 (693)
T ss_dssp SSHHHHHHHHHHHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTS
T ss_pred CCHHHHHHHHHHHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCc
Confidence 9999999999999986 999999999999999 320
Q ss_pred ------------------------------------------------------------------ceeeeeeeEEEEE-
Q 006610 456 ------------------------------------------------------------------VKLEPIEEVTIEL- 468 (639)
Q Consensus 456 ------------------------------------------------------------------~~~EP~~~~~i~v- 468 (639)
++||||++++|.|
T Consensus 533 ~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p 612 (693)
T 2xex_A 533 VPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMP 612 (693)
T ss_dssp SCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEc
Confidence 3789999999999
Q ss_pred ---cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 469 ---LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 469 ---~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|+||++|++|||++ ++|+ +++++|+|.+|++||+||+++|||+|+|+|.|++.|+||+++++++
T Consensus 613 ~~~~G~v~~~l~~rrG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 682 (693)
T 2xex_A 613 EEYMGDIMGDVTSRRGRV---DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI 682 (693)
T ss_dssp GGGHHHHHHHHHHTTCEE---EEEEEETTEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHH
T ss_pred HHHHHHHHHHHHhCCcEe---ecccccCCeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhH
Confidence 999999999999999 9999 6899999999999999999999999999999999999999998864
No 6
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.9e-80 Score=698.83 Aligned_cols=445 Identities=30% Similarity=0.407 Sum_probs=382.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC---CccccccccccccccceeEeeeeEEEeecC-----ceEEEEeCCCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWRE-----NELNMVDTPGH 129 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----~~i~iIDTPGh 129 (639)
+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+....+.|.. +.++|||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 5689999999999999999999999877532 246889999999999999999999998863 79999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
.||..++.++++.+|++|+|||+++|++.||..+|..+...++|+|+|+||+|++++++. ++.+++.+. ++...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~---~v~~el~~~---lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVD---RVKKQIEEV---LGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHH---HHHHHHHHT---SCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHH---HHHHHHHHh---hCCCc
Confidence 999999999999999999999999999999999999999999999999999999887753 344444332 34332
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeee
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l 289 (639)
.+++++||++|. |+++||++|++++|+|..++++||+++|+++++++|.|+++++||++|+|
T Consensus 158 ----~~vi~vSAktg~--------------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l 219 (600)
T 2ywe_A 158 ----EEAILASAKEGI--------------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEV 219 (600)
T ss_dssp ----GGCEECBTTTTB--------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEE
T ss_pred ----ccEEEEEeecCC--------------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEE
Confidence 258999999999 99999999999999999889999999999999999999999999999999
Q ss_pred ecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec-C---CCCCCcCCeeeecCCC--cCCCCcc
Q 006610 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTIE 363 (639)
Q Consensus 290 ~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~~ 363 (639)
++||.|.+.+.+ ...+|.+++.+.+ ++++++++.||||+++. | ++++.+|||||+.+++ .++|++.
T Consensus 220 ~~Gd~I~~~~~~-------~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~ 291 (600)
T 2ywe_A 220 KPGDKIMLMSTG-------KEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQ 291 (600)
T ss_dssp CTTCEEEETTTT-------EEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCC
T ss_pred ecCCEEEecccc-------ceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCC
Confidence 999999998642 5678889988876 58899999999998773 4 5689999999999887 5899999
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCCC----ceEEEEecChhHHHHHHHHHHHc-C
Q 006610 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA----ETYEVQGRGELQLGILIENMRRE-G 438 (639)
Q Consensus 364 ~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~----~~~~v~g~GelhL~vl~e~Lrre-g 438 (639)
+++|++++++.|+++ .+.++|+++|.|+.++||+|+++++++ ..|.|++||||||+|++|||+|| |
T Consensus 292 ~~~P~v~~~i~p~~~---------~d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~ 362 (600)
T 2ywe_A 292 PAKPMVYAGIYPAED---------TTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYG 362 (600)
T ss_dssp CCCCCEEEEEEECTT---------CCHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEEeecccc---------ccHHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcC
Confidence 999999999999886 378999999999999999999997632 45888889999999999999987 9
Q ss_pred cEEEEeCCeEEEEe-e--cC-------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--
Q 006610 439 FELSVSPPKVMYKT-E--NG-------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW-- 490 (639)
Q Consensus 439 ~ev~vs~P~V~yrE-~--~g-------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~-- 490 (639)
+++.+++|+|+||| + +| .++|||++++|.+ +|+||++|++|||++ ++|+
T Consensus 363 ~~v~~~~P~V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~---~~~~~~ 439 (600)
T 2ywe_A 363 VKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQ---KNMTYL 439 (600)
T ss_dssp CCEEECCCEECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEEEE
T ss_pred ceEEEEeeeEEEEEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEE---eccEEc
Confidence 99999999999999 4 46 6999999999999 999999999999999 9999
Q ss_pred -CCEEEEEEEeccccc-cchhhhccccceeceEeeeeccceeec-cCCCCCccceeEEE
Q 006610 491 -GWLWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH-RGLLGNVRKGVLVS 546 (639)
Q Consensus 491 -~~~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~-~g~~~~~~~g~~~~ 546 (639)
+++++|+|++|++|| +||.++|+|+|+|+|+|+++|+||+|+ .+.+..+.||.+|-
T Consensus 440 ~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~ 498 (600)
T 2ywe_A 440 DPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKKPVD 498 (600)
T ss_dssp ETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBCG
T ss_pred CCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEccccccccccCCCEec
Confidence 379999999999999 799999999999999999999999998 58888899998763
No 7
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=4.5e-81 Score=720.58 Aligned_cols=444 Identities=30% Similarity=0.422 Sum_probs=339.6
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~ 130 (639)
.++++||+|+||+|||||||+++|+..++... ...+++|+.+.|+++|+|+......+.|+++.++|||||||.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 35689999999999999999999998776421 235789999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh------
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN------ 204 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~------ 204 (639)
||..++.++++.+|++|+|+|+.++.+.++..+|+.+.+.++|+++|+||+|+..++.. ++.+++.+.+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~---~~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLW---LVIRTMQERLGARPVVMQ 165 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHH---HHHHHHHHTTCCCEEECE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHH---HHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999999999999999999999887653 333333332210
Q ss_pred ----------------------c----CC----------------------------CCc--------------------
Q 006610 205 ----------------------L----GA----------------------------TDE-------------------- 210 (639)
Q Consensus 205 ----------------------~----g~----------------------------~~~-------------------- 210 (639)
+ |. .++
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 0 00 000
Q ss_pred -------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC------------------CCCCCcee
Q 006610 211 -------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA------------------SLDAPFQM 265 (639)
Q Consensus 211 -------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~------------------~~~~p~~~ 265 (639)
..-+|++++||++|. |+++||++|++++|+|.. ++++||++
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~--------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 311 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNK--------------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAA 311 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTB--------------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEE
T ss_pred HHHHHHhCcEeEEEEeecccCc--------------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEE
Confidence 012799999999998 999999999999999965 36889999
Q ss_pred EEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCC
Q 006610 266 LVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPS 345 (639)
Q Consensus 266 ~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~ 345 (639)
+|||+.+|++.|+++++|||||+|++||.|++...+ ..++|.+|+.++|.+++++++|.||||++|.|++++.
T Consensus 312 ~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~ 384 (691)
T 1dar_A 312 LAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETI 384 (691)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTT-------EEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCC
T ss_pred EEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCC-------cEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCc
Confidence 999999999999999999999999999999987532 6789999999999999999999999999999999999
Q ss_pred cCCeeeecCCC-cCCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecC
Q 006610 346 IGHTVANTEVT-TALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRG 423 (639)
Q Consensus 346 ~Gdtl~~~~~~-~~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~G 423 (639)
+|||||+.+.+ .+++++++++|++++++.|+++ .|..||.++|+|+.++||+|+++.+ ++++++|+|||
T Consensus 385 ~Gdtl~~~~~~~~~l~~~~~~~P~~~~ai~p~~~---------~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~G 455 (691)
T 1dar_A 385 TGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK---------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMG 455 (691)
T ss_dssp TTCEEEETTCCCCBCC-----------------------------------------CCCCSCEEEC-----CEEEEESC
T ss_pred cCCEEecCCCcccccCCCCCCCceEEEEEEECCc---------hhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCC
Confidence 99999999888 8899999999999999999875 4789999999999999999999987 77889999999
Q ss_pred hhHHHHHHHHHHHc-CcEEEEeCCeEEEEe-ec-----------------------------------------------
Q 006610 424 ELQLGILIENMRRE-GFELSVSPPKVMYKT-EN----------------------------------------------- 454 (639)
Q Consensus 424 elhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~----------------------------------------------- 454 (639)
||||+|+++||||+ |+++.+++|+|+||| +.
T Consensus 456 elhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p 535 (691)
T 1dar_A 456 ELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIP 535 (691)
T ss_dssp CC---------CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSC
T ss_pred HHHHHHHHHHHHHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCc
Confidence 99999999999986 999999999999999 32
Q ss_pred ---------------------------------------------------------------CceeeeeeeEEEEE---
Q 006610 455 ---------------------------------------------------------------GVKLEPIEEVTIEL--- 468 (639)
Q Consensus 455 ---------------------------------------------------------------g~~~EP~~~~~i~v--- 468 (639)
.+++|||++++|.|
T Consensus 536 ~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~ 615 (691)
T 1dar_A 536 KEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEE 615 (691)
T ss_dssp TTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHH
Confidence 03789999999999
Q ss_pred -cchHHHHhhccceEEeeeeccc--CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 469 -LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 469 -~g~v~~~l~~Rrg~~~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+|+||++|++|||++ ++|+ +++++|+|.+|++||+||+++|||+|+|+|.|++.|+||+++++++
T Consensus 616 ~~G~v~~~l~~rrG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 683 (691)
T 1dar_A 616 YMGDVIGDLNARRGQI---LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQV 683 (691)
T ss_dssp TTTHHHHHHHHTTCCE---EEEEEETTEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHH
T ss_pred HHhHHHHHHHHCCcee---ecceecCCeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhH
Confidence 999999999999999 9999 6899999999999999999999999999999999999999998764
No 8
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.4e-79 Score=691.28 Aligned_cols=446 Identities=28% Similarity=0.394 Sum_probs=378.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC---CccccccccccccccceeEeeeeEEEeec-----CceEEEEeCCCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPGH 129 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~e~ergiTi~~~~~~~~~~-----~~~i~iIDTPGh 129 (639)
+++|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++||+|+.+....+.|. ++.++|||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 4689999999999999999999999887532 24688999999999999999999999886 389999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
.||..++.++++.+|++|+|||+++|++.||..+|..+...++|+|+|+||+|+.++++ .++.+++.+. ++...
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~---~~v~~ei~~~---lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADP---ERVAEEIEDI---VGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCH---HHHHHHHHHH---TCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccH---HHHHHHHHHH---hCCCc
Confidence 99999999999999999999999999999999999999999999999999999988776 3344444443 33322
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeee
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l 289 (639)
.+++++||++|. |+++|+++|++++|+|..++++||+++|+++++++|.|+++++||++|+|
T Consensus 156 ----~~vi~vSAktg~--------------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 156 ----TDAVRCSAKTGV--------------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp ----TTCEEECTTTCT--------------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred ----ceEEEeecccCC--------------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 248999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe-cC---CCCCCcCCeeeecCCC--cCCCCcc
Q 006610 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV-AG---MTKPSIGHTVANTEVT--TALPTIE 363 (639)
Q Consensus 290 ~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i-~g---l~~~~~Gdtl~~~~~~--~~l~~~~ 363 (639)
++||.|.+.+.+ ...+|.+++.+.+. +++++++.||||+++ +| ++++.+|||||+.+.+ .++|.+.
T Consensus 218 ~~Gd~v~~~~~~-------~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~ 289 (599)
T 3cb4_D 218 RKGDKVKVMSTG-------QTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFK 289 (599)
T ss_dssp ESSCEEEETTTC-------CEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCC
T ss_pred ecCCEEEecccc-------ceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCcccccccccc
Confidence 999999998652 45688888888764 889999999999877 34 5588999999999887 7899999
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCC----CceEEEEecChhHHHHHHHHHHHc-C
Q 006610 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGM----AETYEVQGRGELQLGILIENMRRE-G 438 (639)
Q Consensus 364 ~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~----~~~~~v~g~GelhL~vl~e~Lrre-g 438 (639)
+++|++.+.+.|+++ .+.++|.++|.++.++||+|++++.+ ...|.+++||+|||+|++|||+|| |
T Consensus 290 ~~~P~v~~~i~p~~~---------~d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 290 KVKPQVYAGLFPVSS---------DDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp CCCCCEEEEEEESSG---------GGHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred CCCcceEEEEEecCc---------cCHHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 999999999999875 46789999999999999999998753 245888889999999999999987 9
Q ss_pred cEEEEeCCeEEEEe--ecC------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc--CC
Q 006610 439 FELSVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GW 492 (639)
Q Consensus 439 ~ev~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~--~~ 492 (639)
+++.+++|+|+||| .+| .++|||++++|.+ +|+||++|++|||++ ++|+ ++
T Consensus 361 ~~~~~~~P~V~yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~---~~~~~~~~ 437 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQ---TNMVYHGN 437 (599)
T ss_dssp CCEEECCCEECEEEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEECCTT
T ss_pred ceEEEEeeeEEEEEEecCCceEEecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEE---eCcEecCC
Confidence 99999999999999 456 6999999999999 999999999999999 9999 57
Q ss_pred EEEEEEEeccccc-cchhhhccccceeceEeeeeccceeec-cCCCCCccceeEEEe
Q 006610 493 LWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH-RGLLGNVRKGVLVSM 547 (639)
Q Consensus 493 ~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~-~g~~~~~~~g~~~~~ 547 (639)
+++|+|++|++|| +||.++|+|+|+|+|+|+++|+||+|+ .+.+..+.||.+|--
T Consensus 438 ~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~ 494 (599)
T 3cb4_D 438 QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDA 494 (599)
T ss_dssp EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEE
T ss_pred eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEecc
Confidence 9999999999999 799999999999999999999999998 688999999998853
No 9
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=3.3e-77 Score=686.14 Aligned_cols=442 Identities=23% Similarity=0.315 Sum_probs=394.9
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCC------CccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh 129 (639)
..++.+||+|+||+|||||||+++|++..+... ...+++|+.+.|+++|+|+......+.|+++.+||||||||
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 345689999999999999999999998876421 12467888899999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH------
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA------ 203 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~------ 203 (639)
.+|..++.++++.+|++++|+|+.+|+..|+..+|+.+...++|+|+|+||+|+. .+.. ++.+++.+.+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~---~~~~~l~~~l~~~~~~~ 160 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYY---ALLEDLRSTLGPILPID 160 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHH---HHHHHHHHHHCSEEECE
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHH---HHHHHHHHHhCCcceEE
Confidence 9999999999999999999999999999999999999999999999999999997 6543 33333333222
Q ss_pred --------------------------------------------------hc-------------C--CCCc--------
Q 006610 204 --------------------------------------------------NL-------------G--ATDE-------- 210 (639)
Q Consensus 204 --------------------------------------------------~~-------------g--~~~~-------- 210 (639)
.+ + ...+
T Consensus 161 ~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~ 240 (665)
T 2dy1_A 161 LPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 240 (665)
T ss_dssp EEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred eeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 00 0 0000
Q ss_pred ----cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCC-CCCCceeEEEeeeeecccceEEEEEEE
Q 006610 211 ----QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS-LDAPFQMLVTMMEKDFYLGRILTGRVS 285 (639)
Q Consensus 211 ----~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~-~~~p~~~~V~~~~~d~~~G~i~~grV~ 285 (639)
...+|++++||++|. |+++||++|++++|+|... +++||+++|||+.++++.|+++++||+
T Consensus 241 ~~~~~~~~pv~~~SA~~~~--------------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~ 306 (665)
T 2dy1_A 241 AVRRGLLYPVALASGEREI--------------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLY 306 (665)
T ss_dssp HHHTTSCEEEEECBTTTTB--------------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhCCeeEEEEeecccCc--------------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEc
Confidence 012799999999998 9999999999999999754 689999999999999999999999999
Q ss_pred eeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCC--cCCCCcc
Q 006610 286 SGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVT--TALPTIE 363 (639)
Q Consensus 286 sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~--~~l~~~~ 363 (639)
||+|++||.|++.+ ...+|++|+.++|.+++++++|.|||||+|.|++++.+|||||+.+.+ .++++++
T Consensus 307 sG~l~~g~~v~~~~---------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~ 377 (665)
T 2dy1_A 307 RGRLKPGDSLQSEA---------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFAR 377 (665)
T ss_dssp ESEECTTEEEBCTT---------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCC
T ss_pred ccEEecCCEEEcCC---------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCC
Confidence 99999999999763 246899999999999999999999999999999999999999998887 7899999
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHcCcEEE
Q 006610 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELS 442 (639)
Q Consensus 364 ~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrreg~ev~ 442 (639)
+++|++++++.|+++ .|..||.++|+|+.++||+|+++.+ ++++++|+|||||||+|++++||++|+++.
T Consensus 378 ~~~P~~~~~i~p~~~---------~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~~~~v~v~ 448 (665)
T 2dy1_A 378 LPDPNVPVALHPKGR---------TDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVE 448 (665)
T ss_dssp CCCCCEEEEEEESSH---------HHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred CCCceEEEEEEECCh---------hhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHHHCCceEE
Confidence 999999999999874 6889999999999999999999997 778899999999999999999996699999
Q ss_pred EeCCeEEEEe-ecC------------------------------------------------------------------
Q 006610 443 VSPPKVMYKT-ENG------------------------------------------------------------------ 455 (639)
Q Consensus 443 vs~P~V~yrE-~~g------------------------------------------------------------------ 455 (639)
+++|+|+||| +.+
T Consensus 449 ~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~ 528 (665)
T 2dy1_A 449 FSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGF 528 (665)
T ss_dssp EECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSC
T ss_pred EeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCC
Confidence 9999999999 421
Q ss_pred -----------------------------------------ceeeeeeeEEEEE----cchHHHHhhccceEEeeeeccc
Q 006610 456 -----------------------------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW 490 (639)
Q Consensus 456 -----------------------------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~ 490 (639)
+++|||++++|.| +|+||++|++|||++ ++|+
T Consensus 529 pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i---~~~~ 605 (665)
T 2dy1_A 529 PVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRI---LGME 605 (665)
T ss_dssp CBCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEE
T ss_pred ceeeEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEE---eCcE
Confidence 3799999999999 999999999999999 9999
Q ss_pred --CCEEEEEEEeccccccchhhhccccceeceEeeeeccceeeccCCC
Q 006610 491 --GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (639)
Q Consensus 491 --~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (639)
+++++|+|.+|++|++||+++||++|+|+|.|++.|+||+++++++
T Consensus 606 ~~~~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 653 (665)
T 2dy1_A 606 QEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHL 653 (665)
T ss_dssp EETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHH
T ss_pred ecCCeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccH
Confidence 6899999999999999999999999999999999999999998765
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=3.4e-75 Score=684.33 Aligned_cols=469 Identities=26% Similarity=0.366 Sum_probs=383.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC----ccccccccccccccceeEeeeeEEEeec----------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERAMDSISLERERGITIASKVTGISWR---------------- 117 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~----~~~v~D~~~~e~ergiTi~~~~~~~~~~---------------- 117 (639)
+++|||+|+||+|||||||+++|+..++.... ..+++|+.+.|++||+|+.+....+.|+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 46899999999999999999999998774322 2478899999999999999999888886
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC----CCHHH---
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSEER--- 190 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~~~--- 190 (639)
++.++|||||||.||..++.++++.+|++|+|||+.+|++.|+..+|+++...++|+|+|+||+|+.. .+++.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~ 176 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQ 176 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999863 23322
Q ss_pred -HHHHHHHHHHHHHhcC---CC---CccccccEEecccccCCCCC----------------------cc-----cC----
Q 006610 191 -CDEVESLVFDLFANLG---AT---DEQLDFPVLYASAKEGWASS----------------------TF-----TK---- 232 (639)
Q Consensus 191 -~~~v~~~i~~l~~~~g---~~---~~~~~~Pvi~~SA~~g~~~~----------------------~~-----~~---- 232 (639)
+..+.+++...+..+. .. ......++.++||++||+.. -| ..
T Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~ 256 (842)
T 1n0u_A 177 TFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKK 256 (842)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTE
T ss_pred HHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCe
Confidence 3444555555543221 01 11123468889999887521 00 00
Q ss_pred ---C--Cccc-----------------------------------ccc--------------------------hHHHHH
Q 006610 233 ---D--PPAD-----------------------------------VRN--------------------------MSQLLD 246 (639)
Q Consensus 233 ---~--~~~~-----------------------------------~~g--------------------------l~~Lld 246 (639)
. +... ..| ++.||+
T Consensus 257 ~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd 336 (842)
T 1n0u_A 257 WTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLE 336 (842)
T ss_dssp EESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHH
T ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHH
Confidence 0 0000 001 388999
Q ss_pred HHHhhCCCCC-------------------------CCCCCCceeEEEeeeeecccce-EEEEEEEeeeeecCCEEEEeec
Q 006610 247 AIIRHVPPPK-------------------------ASLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLRI 300 (639)
Q Consensus 247 ~I~~~lP~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-i~~grV~sG~l~~gd~v~~~~~ 300 (639)
+|++++|+|. +++++||.++|||+.++++.|+ ++++|||||+|+.||.|++.+.
T Consensus 337 ~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~ 416 (842)
T 1n0u_A 337 MIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGP 416 (842)
T ss_dssp HHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECT
T ss_pred HHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccc
Confidence 9999999995 3578999999999999999996 9999999999999999987654
Q ss_pred cC-CCC-ceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcC-CeeeecCCCcCCCCccCC-CCeeeeeeeec
Q 006610 301 TD-SGT-EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIG-HTVANTEVTTALPTIELD-PPTISMTFGVN 376 (639)
Q Consensus 301 ~~-~~~-~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~G-dtl~~~~~~~~l~~~~~~-~P~~~~~~~~~ 376 (639)
+. .+. +....+||++|+.++|.+++++++|.|||||+|.|++++.+| +|||+.+.+.+++++.++ +|+++++++|.
T Consensus 417 ~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep~ 496 (842)
T 1n0u_A 417 NYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVK 496 (842)
T ss_dssp TCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEEES
T ss_pred cccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEEEC
Confidence 21 110 012368999999999999999999999999999999998665 799998888888999988 59999999997
Q ss_pred CCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeCCCceEEEEecChhHHHHHHHHHHHc--CcEEEEeCCeEEEEe-e
Q 006610 377 DSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE--GFELSVSPPKVMYKT-E 453 (639)
Q Consensus 377 ~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~g~GelhL~vl~e~Lrre--g~ev~vs~P~V~yrE-~ 453 (639)
+. .|..||.++|+|+.++||+|+++.+++++++|+|||||||+|++++|||+ |+|+.+++|+|+||| +
T Consensus 497 ~~---------~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi 567 (842)
T 1n0u_A 497 NA---------NDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETV 567 (842)
T ss_dssp SG---------GGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEE
T ss_pred CH---------HHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEee
Confidence 64 68999999999999999999999986678999999999999999999874 999999999999999 2
Q ss_pred -----c--------------------------------------------------------------------------
Q 006610 454 -----N-------------------------------------------------------------------------- 454 (639)
Q Consensus 454 -----~-------------------------------------------------------------------------- 454 (639)
.
T Consensus 568 ~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~ 647 (842)
T 1n0u_A 568 ESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVI 647 (842)
T ss_dssp SSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEE
T ss_pred ccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEE
Confidence 0
Q ss_pred ----C----------------------------------------------------------------------ceeee
Q 006610 455 ----G----------------------------------------------------------------------VKLEP 460 (639)
Q Consensus 455 ----g----------------------------------------------------------------------~~~EP 460 (639)
| ++|||
T Consensus 648 ~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEP 727 (842)
T 1n0u_A 648 DQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEP 727 (842)
T ss_dssp ECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred ecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEee
Confidence 1 27999
Q ss_pred eeeEEEEE----cchHHHHhhccceEEeeeeccc---C-CEEEEEEEeccccccchhhhccccceeceEeeeeccceeec
Q 006610 461 IEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (639)
Q Consensus 461 ~~~~~i~v----~g~v~~~l~~Rrg~~~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (639)
|+.++|.| +|+||++|++|||++ ++|+ | +++.|+|++|++||+||+++||++|+|+|.|++.|+||+++
T Consensus 728 i~~veI~vP~e~~G~V~~dL~~RRG~i---~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~v 804 (842)
T 1n0u_A 728 VFLVEIQCPEQAVGGIYSVLNKKRGQV---VSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTL 804 (842)
T ss_dssp EEEEEEEECGGGHHHHHHHHHTTTCEE---EEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred EEEEEEEccHHHHHHHHHHHHhcCcEE---eccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeC
Confidence 99999999 999999999999999 9888 3 57999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 006610 533 RGLLGN 538 (639)
Q Consensus 533 ~g~~~~ 538 (639)
|+++..
T Consensus 805 p~~~~~ 810 (842)
T 1n0u_A 805 GSDPLD 810 (842)
T ss_dssp CSCTTC
T ss_pred CCCccc
Confidence 998754
No 11
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=6.6e-74 Score=643.71 Aligned_cols=361 Identities=24% Similarity=0.359 Sum_probs=301.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCC----------CCccccccccccccccceeEeeeeEEEeecCceEEEEeCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD----------IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----------~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTP 127 (639)
.++|||+|+||+|||||||+++||+.+|.. ....++||++++|++|||||.++..++.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 478999999999999999999999999852 2235899999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~--- 204 (639)
||.||.+|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++++++.+ +.+++.+.|..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~---~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLD---VMADIEQHLQIECA 185 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHH---HHHHHHHHHTSEEE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhH---hhhhhhhhcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999844 45555444310
Q ss_pred --------------------------------------------------------------------cCCCC------c
Q 006610 205 --------------------------------------------------------------------LGATD------E 210 (639)
Q Consensus 205 --------------------------------------------------------------------~g~~~------~ 210 (639)
.+... .
T Consensus 186 p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~ 265 (548)
T 3vqt_A 186 PMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLK 265 (548)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHT
T ss_pred eEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHh
Confidence 00000 0
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC---------CCCCCceeEEEeeeee---cccce
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA---------SLDAPFQMLVTMMEKD---FYLGR 278 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~---------~~~~p~~~~V~~~~~d---~~~G~ 278 (639)
..-+||+++||+++. |+++|||+|++++|+|.. +.+.||.++|||+.++ +|.|+
T Consensus 266 g~~~PV~~gSA~~~~--------------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Gr 331 (548)
T 3vqt_A 266 GELTPVFFGSAINNF--------------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDR 331 (548)
T ss_dssp TSEEEEEECBGGGTB--------------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------C
T ss_pred CCcceeeecccccCc--------------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCe
Confidence 012799999999999 999999999999999964 2367999999999877 89999
Q ss_pred EEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcC
Q 006610 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA 358 (639)
Q Consensus 279 i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~ 358 (639)
++|+|||||+|++|+.|++...+ +.+||.+++.++|.+++++++|.|||||+|.|++++.+|||||+.+.+.+
T Consensus 332 la~~RV~sG~l~~g~~v~~~~~~-------~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~ 404 (548)
T 3vqt_A 332 MAFLRICSGTFTRGMRLKHHRTG-------KDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLK 404 (548)
T ss_dssp EEEEEEEESCEETTCEEEETTTT-------EEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCC
T ss_pred EEEEEEecceecCCCEEEeeccc-------cccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccc
Confidence 99999999999999999998542 67899999999999999999999999999999999999999999988889
Q ss_pred CCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHc
Q 006610 359 LPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE 437 (639)
Q Consensus 359 l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrre 437 (639)
++++++++|++++++.|+++ .+..||.++|.+++++|+. ++.++ ++++++|+|||||||+|+++||||+
T Consensus 405 ~~~i~~~~P~~~~av~p~~~---------~d~~kl~~~L~~L~eed~~-~v~~~~et~e~il~g~GeLHLeI~~erL~~e 474 (548)
T 3vqt_A 405 FVGIPNFAPEHFRRVRLKNP---------LKAKQLQKGLEQLAEEGAV-QLFRPLVNNDYILGAVGVLQFDVIVARLADE 474 (548)
T ss_dssp BCCCEEECCSEEEEEEESCG---------GGHHHHHHHHHHHHHTTSS-EEEEESSSCCCEEEESSTHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcceeeeeeCCc---------hhHHHHHHHHHHhhhcCce-eEEEECCCCcEEEEEECHHHHHHHHHHHHHH
Confidence 99999999999999999874 5889999999999999985 45555 7788999999999999999999886
Q ss_pred -CcEEE-----EeCCeEEEEe
Q 006610 438 -GFELS-----VSPPKVMYKT 452 (639)
Q Consensus 438 -g~ev~-----vs~P~V~yrE 452 (639)
|+|+. ++.|+|+|||
T Consensus 475 y~vev~~e~v~~~~P~V~YrE 495 (548)
T 3vqt_A 475 YGVDAVYEGVSTHTARWVYCE 495 (548)
T ss_dssp HCCCEEEEECSCCEEEEEECS
T ss_pred hCCCEEEeeccccCceEEecC
Confidence 99876 5789999999
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=8.5e-61 Score=535.26 Aligned_cols=362 Identities=22% Similarity=0.321 Sum_probs=292.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----------CccccccccccccccceeEeeeeEEEeecCceEEEEeCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTP 127 (639)
++++||+|+||+|||||||+++|+...+... ...+++|+.+.|+++|+|+......+.|++++++|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3579999999999999999999998765321 125688999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~--- 204 (639)
||.||..++.++++.+|++|+|+|+.+|++.|+..+|+.+...++|+++|+||+|+..++.. ++.+++.+.+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~---~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPM---ELLDEVENELKIGCA 167 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHH---HHHHHHHHHHCCEEE
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHH---HHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999887663 233333332210
Q ss_pred -------------------------c----CC-----------CC-----------------------------------
Q 006610 205 -------------------------L----GA-----------TD----------------------------------- 209 (639)
Q Consensus 205 -------------------------~----g~-----------~~----------------------------------- 209 (639)
+ |. .+
T Consensus 168 ~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 247 (529)
T 2h5e_A 168 PITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFL 247 (529)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHH
Confidence 0 10 00
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCC---------CCCceeEEEeeee---ecccc
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASL---------DAPFQMLVTMMEK---DFYLG 277 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~---------~~p~~~~V~~~~~---d~~~G 277 (639)
....+||+++||++|. |+++||++|++++|+|.... ++||+++|||+.. +++.|
T Consensus 248 ~~~~~Pv~~gSA~~~~--------------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G 313 (529)
T 2h5e_A 248 AGEITPVFFGTALGNF--------------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRD 313 (529)
T ss_dssp TTSEEEEEECBTTTTB--------------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSC
T ss_pred hCceeEEEeeecccCC--------------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCc
Confidence 0012699999999998 99999999999999996421 5799999999976 46799
Q ss_pred eEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCc
Q 006610 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (639)
Q Consensus 278 ~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~ 357 (639)
+++++||+||+|++||.|++.+.+ +..||++|+.+.|.+++++++|.|||||+|.|++++.+|||||+.+ +.
T Consensus 314 ~i~~~RV~sG~l~~g~~v~~~~~~-------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~ 385 (529)
T 2h5e_A 314 RVAFMRVVSGKYEKGMKLRQVRTA-------KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MM 385 (529)
T ss_dssp CCEEEEEEESCEETTCEEEETTTT-------EEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CC
T ss_pred eEEEEEEecCeEcCCCEEEEeeCC-------CEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-cc
Confidence 999999999999999999998642 5789999999999999999999999999999999999999999977 46
Q ss_pred CCCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHH
Q 006610 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (639)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrr 436 (639)
.++++++++|++++++.+.+. .+..||.++|+|+++||+ +++.++ ++++++|+|||||||+|+++||+|
T Consensus 386 ~~~~~~~~~P~~~~~v~~~~~---------~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ 455 (529)
T 2h5e_A 386 KFTGIPNFAPELFRRIRLKDP---------LKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKS 455 (529)
T ss_dssp CBCCCEEECCSEEEEEEESCC------------CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHH
T ss_pred ccCCCCCCCccEEEEEEECCh---------HHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHH
Confidence 788899999999999998764 678999999999999997 888886 777899999999999999999987
Q ss_pred c-CcEEEEeCCeEEEEe-ec
Q 006610 437 E-GFELSVSPPKVMYKT-EN 454 (639)
Q Consensus 437 e-g~ev~vs~P~V~yrE-~~ 454 (639)
+ |+++.+++|+|+||| |.
T Consensus 456 ey~v~v~~~~~~v~y~eti~ 475 (529)
T 2h5e_A 456 EYNVEAVYESVNVATARWVE 475 (529)
T ss_dssp HSSCCEEEECCCCSEEEEEE
T ss_pred HhCcEEEEecCceeEEEEEc
Confidence 6 999999999999999 54
No 13
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=4.8e-61 Score=536.74 Aligned_cols=362 Identities=23% Similarity=0.308 Sum_probs=313.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC----------CccccccccccccccceeEeeeeEEEeecCceEEEEeCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTP 127 (639)
+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|+++|+|+......+.|++++++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3589999999999999999999998777421 134578999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc--
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL-- 205 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~-- 205 (639)
||.||..++.++++.+|++|+|+|+.+|+..++..+|..+...++|+|+|+||+|+..+++.. +.+++.+.+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~---~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIE---LLDEIESILRIHCA 167 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHH---HHHHHHHHHCCEEE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHH---HHHHHHHhhCCCce
Confidence 999999999999999999999999999999999999999999999999999999998777633 333333322100
Q ss_pred ------C------------------CCC---------------------------------------------------c
Q 006610 206 ------G------------------ATD---------------------------------------------------E 210 (639)
Q Consensus 206 ------g------------------~~~---------------------------------------------------~ 210 (639)
+ +.. .
T Consensus 168 ~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 247 (528)
T 3tr5_A 168 PVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLK 247 (528)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhc
Confidence 0 000 0
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCC---------CCCCceeEEEeeee--ec-ccce
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS---------LDAPFQMLVTMMEK--DF-YLGR 278 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~---------~~~p~~~~V~~~~~--d~-~~G~ 278 (639)
...+||+++||++|. |+++||++|++++|+|... .+.||.++|||+.. |+ |.|+
T Consensus 248 ~~~~PV~~gSA~~~~--------------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~ 313 (528)
T 3tr5_A 248 GELTPIFFGSAINNF--------------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDR 313 (528)
T ss_dssp TSEEEEEECBGGGTB--------------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCE
T ss_pred CceeEEEeccccCCc--------------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCce
Confidence 012499999999999 9999999999999999643 25899999999985 88 9999
Q ss_pred EEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCCCcCCeeeecCCCcC
Q 006610 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA 358 (639)
Q Consensus 279 i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~Gdtl~~~~~~~~ 358 (639)
++++||+||+|++||.|++.+.+ +.+||.+++.++|.+++++++|.||||+++.|++++++|||||+. .+..
T Consensus 314 l~~~RV~sG~l~~g~~v~~~~~~-------~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~ 385 (528)
T 3tr5_A 314 IAFLRIASGQYQKGMKAYHVRLK-------KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFK 385 (528)
T ss_dssp EEEEEEEESCEETTEEEEETTTT-------EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCC
T ss_pred EEEEEEecCeEcCCCEEEecCCC-------ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcc
Confidence 99999999999999999998642 678999999999999999999999999999999999999999984 4456
Q ss_pred CCCccCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEeC-CCceEEEEecChhHHHHHHHHHHHc
Q 006610 359 LPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE 437 (639)
Q Consensus 359 l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~g~GelhL~vl~e~Lrre 437 (639)
++++++++|++.+++.+.++ .+..||.++|.|+++|||+ ++..+ .+++++|+|||||||+|+++||+++
T Consensus 386 ~~~~~~~~P~~~~~i~~~~~---------~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~e 455 (528)
T 3tr5_A 386 FTGIPNFASELFRLVRLKDP---------LKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENE 455 (528)
T ss_dssp BCCCEEECCSEEEEEEESCG---------GGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEEEEEECCh---------hHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 77888889999999998653 6889999999999999986 77666 7788999999999999999999876
Q ss_pred -CcEEEEeCCeEEEEe-ec
Q 006610 438 -GFELSVSPPKVMYKT-EN 454 (639)
Q Consensus 438 -g~ev~vs~P~V~yrE-~~ 454 (639)
|+++.+++|+|.|++ +.
T Consensus 456 y~v~v~~~~~~v~~~~~i~ 474 (528)
T 3tr5_A 456 YNVKCVYESVNVVTARWVI 474 (528)
T ss_dssp HCCCEEEECCSCCEEEEEE
T ss_pred hCcEEEEecCceEEEEEec
Confidence 999999999999998 43
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.5e-39 Score=356.81 Aligned_cols=282 Identities=21% Similarity=0.307 Sum_probs=233.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+..+||+++||+|||||||+++|++.++.... ..+++|..+.|+++|+|++.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45789999999999999999999998764211 13689999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCC-cEEEEcCCCCCCC--CH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLR-PILLLNKVDRPAV--SE 188 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~lp-~IvviNKiD~~~~--~~ 188 (639)
++++|||||||.+|...+..+++.+|++||||||.+|.+ +||++++..+...++| +|+|+||+|+... +.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 999999999999999999999999999999999999987 7999999999999999 8899999999543 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (639)
.+++++.+++.+++..+++.... ++|++++||++|.+....... ..|.....|++ +++.+|+|....++||++.|.
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~-~~~~i~iSA~~G~ni~~l~~~--~~w~~g~~L~~-~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKK-DIHFMPCSGLTGANLKEQSDF--CPWYIGLPFIP-YLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccC-CeeEEEeeccCCccccccccc--ccccCchHHHH-HHHhCCCCccCCCCCeEEEEE
Confidence 56777888888888888875322 478999999999954432211 01112233555 446688888888999999999
Q ss_pred eeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEE--ecCCC--CC
Q 006610 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIIS--VAGMT--KP 344 (639)
Q Consensus 269 ~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~--i~gl~--~~ 344 (639)
+++. +.|+++.|||.+|+|++||.|.+.+.+ ...+|++|+.+ +.++++|.|||+|+ +.|++ ++
T Consensus 251 ~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~-------~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~gi~~~~i 317 (439)
T 3j2k_7 251 DKYK--DMGTVVLGKLESGSIFKGQQLVMMPNK-------HNVEVLGILSD----DTETDFVAPGENLKIRLKGIEEEEI 317 (439)
T ss_pred EEEc--CCCeEEEEEEEeeEEecCCEEEEccCC-------ceEEEEEEEEC----CeEcCEecCCCcceEEEeccchhhc
Confidence 9875 479999999999999999999998753 46789998764 46899999999998 57775 67
Q ss_pred CcCCeeeecCCC
Q 006610 345 SIGHTVANTEVT 356 (639)
Q Consensus 345 ~~Gdtl~~~~~~ 356 (639)
+.||+||+++++
T Consensus 318 ~rG~vl~~~~~~ 329 (439)
T 3j2k_7 318 LPGFILCDPSNL 329 (439)
T ss_pred CCcEEecCCCCC
Confidence 889999998753
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=2.8e-39 Score=351.51 Aligned_cols=286 Identities=31% Similarity=0.386 Sum_probs=235.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH---cCC--CCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ---CGA--DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~---~g~--~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
...+||+++||+|||||||+++|++. .|. .......+|..+.|+++|+|+......+.+++++++|||||||.+|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34689999999999999999999984 221 1112336788899999999999988888888999999999999999
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...+.++++.+|++|+|+|+.++.+.|++++|..+...++| +|+|+||+|+.. +.+.++.+.+++.+++..+++...
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~- 166 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGD- 166 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSCTT-
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhccccc-
Confidence 99999999999999999999999999999999999999999 689999999965 444555666778888877775322
Q ss_pred ccccEEecccccCCCCCcccC----CCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEee
Q 006610 212 LDFPVLYASAKEGWASSTFTK----DPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSG 287 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~----~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG 287 (639)
++|++++||++|.+.....+ .......++.+|+++|.+++|.|..+.++||+++|++++++++.|++++|||++|
T Consensus 167 -~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G 245 (405)
T 2c78_A 167 -EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERG 245 (405)
T ss_dssp -TSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBS
T ss_pred -CCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEecc
Confidence 36899999999973110000 0000112489999999999999988889999999999999999999999999999
Q ss_pred eeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--CC--CCCCcCCeeeecC
Q 006610 288 VVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GM--TKPSIGHTVANTE 354 (639)
Q Consensus 288 ~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~Gdtl~~~~ 354 (639)
+|++||.|.+.+.++. ....+|++|..+. .++++|.|||+|++. |+ +++..||+||+++
T Consensus 246 ~l~~gd~v~~~~~~~~----~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 246 KVKVGDEVEIVGLAPE----TRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EEETTCEEEEESSSSS----CEEEEEEEEEETT----EEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred cccCCCEEEEeCCCCC----eeeEEEEEEEECC----cccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 9999999999875321 1567899987653 689999999998874 65 6899999999875
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=2.6e-39 Score=350.83 Aligned_cols=278 Identities=29% Similarity=0.389 Sum_probs=233.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCC----CCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
..||+++||+|||||||+++|++.... .....+.+|....|+++|+|+......+.+++++++|||||||.+|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 468999999999999999999985321 1112335788899999999999988888888899999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+.++++.+|++|+|||+.+|.++||+++|..+...++|. |+|+||+|+.. +...++.+.+++.+++..+++... ++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~ 159 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGE--ET 159 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTT--TS
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCcc--cC
Confidence 999999999999999999999999999999999999994 79999999965 445555667788888887776432 37
Q ss_pred cEEecccccCCCCCcccCCCcccccc-hHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~g-l~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd 293 (639)
|++++||++|.+..+ + ....| +.+|+++|.+++|.|..+.++||+++|++++.+++.|++++|||++|+|++||
T Consensus 160 ~~i~~SA~~g~n~~~----~-~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd 234 (397)
T 1d2e_A 160 PIIVGSALCALEQRD----P-ELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGD 234 (397)
T ss_dssp CEEECCHHHHHTTCC----T-TTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTC
T ss_pred cEEEeehhhcccccC----C-CccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCC
Confidence 899999999874210 0 11125 89999999999999988889999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--CC--CCCCcCCeeeecC
Q 006610 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GM--TKPSIGHTVANTE 354 (639)
Q Consensus 294 ~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~Gdtl~~~~ 354 (639)
.|.+.+.+ .....+|++|..+. .++++|.|||+|++. |+ +++..||+||+++
T Consensus 235 ~v~~~~~~-----~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 235 ECEFLGHS-----KNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp EEEEEETT-----EEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEEeCCC-----CCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 99988652 12567899987753 689999999998774 66 5799999999875
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=5.5e-39 Score=352.25 Aligned_cols=283 Identities=28% Similarity=0.357 Sum_probs=224.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc-------------------cccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH-------------------ERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-------------------~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+..+||+++||+|||||||+++|++.++..... .+++|..+.|+++|+|+......+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 357899999999999999999999886532211 1468999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCC-cEEEEcCCCCCC--CCH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPA--VSE 188 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~--~~~ 188 (639)
++++|||||||.+|...+.++++.+|++|+|||+.+| .+.||++++..+...++| +|+|+||+|+.. .+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 788999999999999986 789999999976 345
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (639)
++++++.+++.+++..+++... ++|++++||++|.+..+..... .+..-..|+++| +.+|+|....++||++.|.
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~--~~~~i~iSA~~g~~v~e~~~~~--~~~~g~~Ll~~l-~~~~~p~~~~~~~~~~~v~ 238 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTN--KVRFVPVVAPSGDNITHKSENM--KWYNGPTLEEYL-DQLELPPKPVDKPLRIPIQ 238 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCT--TCEEEECBTTTTBTTTBCCSSC--TTCCSCCHHHHH-TTCCCCCCGGGSCCBEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcC--CceEEEeecccCcccccccccc--ccccchhHHHHH-hccCCCCCCCCCCeEEEEE
Confidence 6667788888888888776432 3789999999998554322110 111113688885 4567777767899999999
Q ss_pred eeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--C--CCCC
Q 006610 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--G--MTKP 344 (639)
Q Consensus 269 ~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~ 344 (639)
.+++.++.|++++|||++|+|++||.|.+.+.+ ...+|++|+.+ +.++++|.|||+|++. | .+++
T Consensus 239 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i 307 (435)
T 1jny_A 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG-------KVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDI 307 (435)
T ss_dssp EEEEETTTEEEEEEECCBSCEETTCEEEEETTT-------EEEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGC
T ss_pred EEEEeCCCcEEEEEEEecCeEEcCCEEEECCce-------eEEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHc
Confidence 999999999999999999999999999998752 67899999764 3689999999999883 4 4689
Q ss_pred CcCCeeeecCCC
Q 006610 345 SIGHTVANTEVT 356 (639)
Q Consensus 345 ~~Gdtl~~~~~~ 356 (639)
++||+||+++.+
T Consensus 308 ~~Gd~l~~~~~~ 319 (435)
T 1jny_A 308 KRGDVVGHPNNP 319 (435)
T ss_dssp CTTCEEECTTSC
T ss_pred CCccEecCCCCC
Confidence 999999987543
No 18
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4.5e-38 Score=349.42 Aligned_cols=288 Identities=24% Similarity=0.277 Sum_probs=231.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------------------CccccccccccccccceeEeeeeEEEeecCc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWREN 119 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~ 119 (639)
...||+++||+|+|||||+++|++.++... ...+++|....|+++|+|++.....+.++++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 467999999999999999999998865321 1246789999999999999999999999999
Q ss_pred eEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHH
Q 006610 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERC 191 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~ 191 (639)
+++|||||||.+|...+..+++.+|++|||||+.+| ...|+++++..+...+++ +|+|+||+|+..++...+
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999999999999999999999999999998 678999999999999976 788999999988777888
Q ss_pred HHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCC----CcccccchHHHHHHHHhhCCC--CCCCCCCCcee
Q 006610 192 DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD----PPADVRNMSQLLDAIIRHVPP--PKASLDAPFQM 265 (639)
Q Consensus 192 ~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~----~~~~~~gl~~Lld~I~~~lP~--p~~~~~~p~~~ 265 (639)
+++.+++.+++..+++... .+|++++||++|.+..+.... +++++..+.++|+.+...+|. |....+.||++
T Consensus 192 ~~i~~~~~~~l~~~g~~~~--~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGG--GEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHcCCCcc--cceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 8888888888888877543 368999999999976654321 334445688899998888876 66778899999
Q ss_pred EEEeeeeec---ccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeee----CCceeeeccCCCCceEEe
Q 006610 266 LVTMMEKDF---YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK----GTGMVLIDSAGAGDIISV 338 (639)
Q Consensus 266 ~V~~~~~d~---~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~----g~~~~~v~~a~aGdIv~i 338 (639)
.|..++..+ +.|+++.|||.+|+|++||.|.+.+.+ ...+|++|..+. |.++.++++|.|||+|+|
T Consensus 270 ~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~ 342 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE-------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTL 342 (483)
T ss_dssp EEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT-------EEEEEEEEEETTTC-----CCEESCEETTCEEEE
T ss_pred EEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC-------CeEEEEEEEEcCccccccccccccEECCCCEEEE
Confidence 999999887 489999999999999999999999753 567899999874 566789999999999988
Q ss_pred ----cCCCCCCcCCeeeecCC
Q 006610 339 ----AGMTKPSIGHTVANTEV 355 (639)
Q Consensus 339 ----~gl~~~~~Gdtl~~~~~ 355 (639)
.+.++++.||+||++++
T Consensus 343 ~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 343 KLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp EEESCCGGGCCTTCEEECTTC
T ss_pred EEEecccccCCceEEEEcCCC
Confidence 34478999999998875
No 19
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.8e-38 Score=350.93 Aligned_cols=281 Identities=26% Similarity=0.337 Sum_probs=203.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------------------CccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+..+||+++||+|||||||+++|++.++... ...+++|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999998766321 114578999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCc-------hhHHHHHHHHHHcCCC-cEEEEcCCCCCC--CCH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLR-PILLLNKVDRPA--VSE 188 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~-------~qt~~~l~~~~~~~lp-~IvviNKiD~~~--~~~ 188 (639)
++++|||||||.+|...+.++++.+|++|||||+.+|++ +||++++..+...++| +|+|+||+|+.. ++.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999974 7999999999999998 789999999964 346
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCccccccEEecccccCCCCCcccCC---CcccccchHHHHHHHHhhCCCCCCCCCCCce
Q 006610 189 ERCDEVESLVFDLFANL-GATDEQLDFPVLYASAKEGWASSTFTKD---PPADVRNMSQLLDAIIRHVPPPKASLDAPFQ 264 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~-g~~~~~~~~Pvi~~SA~~g~~~~~~~~~---~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~ 264 (639)
++++++.+++.+++..+ ++.. ..++|++++||++|.+..+.... +++.+ ..|++.| +.+|.|..+.++||+
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g---~~L~~~l-~~i~~~~~~~~~p~~ 275 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQG---PSLLEYL-DSMTHLERKVNAPFI 275 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCS---CCHHHHH-HHCCCCHHHHTSCCE
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccc---hhHHHHH-HhCCCCcCCCCCCcE
Confidence 67777888888888776 6641 11378999999999976554321 23222 2355544 568888777789999
Q ss_pred eEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cC-C
Q 006610 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG-M 341 (639)
Q Consensus 265 ~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~g-l 341 (639)
+.|..++.+ .|++++|||.+|+|++||.|.+.+.+ ...+|++|+.+ .+.++++|.|||+|++ .| .
T Consensus 276 ~~v~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~ 343 (467)
T 1r5b_A 276 MPIASKYKD--LGTILEGKIEAGSIKKNSNVLVMPIN-------QTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDD 343 (467)
T ss_dssp EECCEEEES--SSEEEEEECCBSEEETTEEEEEETTT-------EEEEEEEEECT---TCCEESEEETTCEEEEEEESCC
T ss_pred EEEEEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCC-------eeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccH
Confidence 999998764 79999999999999999999998752 56789999864 2468999999999988 56 6
Q ss_pred CCCCcCCeeeecCC
Q 006610 342 TKPSIGHTVANTEV 355 (639)
Q Consensus 342 ~~~~~Gdtl~~~~~ 355 (639)
++++.||+||+++.
T Consensus 344 ~~i~rG~vl~~~~~ 357 (467)
T 1r5b_A 344 SDVQTGYVLTSTKN 357 (467)
T ss_dssp TTCCTTCEEECSSS
T ss_pred hhCCceEEEeCCCC
Confidence 68999999998764
No 20
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-39 Score=362.80 Aligned_cols=283 Identities=24% Similarity=0.303 Sum_probs=200.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
+.++||+|+||+|||||||+++|++.++.... ..+++|..+.|+++|+|+......+.+++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45789999999999999999999987653211 14689999999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-------chhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-------LAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-------~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (639)
+.++|||||||.+|...+..+++.+|++|||||+.+|. ++||++++..+...++| +|+|+||+|+..++..+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~ 334 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDR 334 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHH
Confidence 99999999999999999999999999999999999864 89999999999999998 78899999998877888
Q ss_pred HHHHHHHHHHHH-HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEe
Q 006610 191 CDEVESLVFDLF-ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTM 269 (639)
Q Consensus 191 ~~~v~~~i~~l~-~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~ 269 (639)
+.++.+++.+++ ..+++... .+|++++||++|.+...........|.....|+++|...+| |....++||++.|..
T Consensus 335 ~~~i~~el~~~l~~~~g~~~~--~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~ 411 (592)
T 3mca_A 335 FQEIKNIVSDFLIKMVGFKTS--NVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDD 411 (592)
T ss_dssp HHHHHHHHHHHHTTTSCCCGG--GEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCcc--ceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheeeE
Confidence 888888888888 77776543 36899999999995543221111122233479999888777 666778999999999
Q ss_pred eeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeec-cCCCCceEEe--cCCC--CC
Q 006610 270 MEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLID-SAGAGDIISV--AGMT--KP 344 (639)
Q Consensus 270 ~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~-~a~aGdIv~i--~gl~--~~ 344 (639)
++.. +.|++++|||.+|+|++||.|.+.+.+ ...+|++|+.++ .+++ +|.|||+|++ .|++ ++
T Consensus 412 v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~-------~~~~V~~i~~~~----~~~~~~a~aG~~v~~~l~~i~~~~i 479 (592)
T 3mca_A 412 VYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ-------EDAYVKNVIRNS----DPSSTWAVAGDTVTLQLADIEVNQL 479 (592)
T ss_dssp EEEE-TTEEEEEEEEEESEEETTCEEEETTTT-------EEEEEEEEECSS----SCSCCEEETTCEEEEEESSSCGGGC
T ss_pred EEec-CCeEEEEEEEeeeeEccCCEEEEccCC-------ceEEEEEEEEcC----ccCcceecCCCEEEEEEcccccccc
Confidence 9999 999999999999999999999998753 567899998753 5889 9999999985 6764 68
Q ss_pred CcCCeeeecCC
Q 006610 345 SIGHTVANTEV 355 (639)
Q Consensus 345 ~~Gdtl~~~~~ 355 (639)
+.||+||+++.
T Consensus 480 ~rG~vl~~~~~ 490 (592)
T 3mca_A 480 RPGDILSNYEN 490 (592)
T ss_dssp CTTCEEECSSS
T ss_pred ceEEEeccCCC
Confidence 99999999865
No 21
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.8e-37 Score=338.69 Aligned_cols=281 Identities=21% Similarity=0.271 Sum_probs=225.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC---------------------ccccccccccccccceeEeeeeEEEee
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------------HERAMDSISLERERGITIASKVTGISW 116 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------------~~~v~D~~~~e~ergiTi~~~~~~~~~ 116 (639)
+..+||+++||+|||||||+++|++..+.... ..+.+|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34689999999999999999999988642100 013578899999999999999999999
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHH
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVE 195 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~ 195 (639)
++.+++|||||||.+|...+.++++.+|++|||+|+.+|.++|+++++..+...++| +|+|+||+|+..++.+++.++.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 7889999999876676677777
Q ss_pred HHHHHHHHhcCCCCccccccEEecccccCCCCCcccCC-CcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeec
Q 006610 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDF 274 (639)
Q Consensus 196 ~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~ 274 (639)
+++.+++..++... .++|++++||++|.+....... +++.+.. |++ +++.+|.|..+.++||++.|..++...
T Consensus 182 ~~~~~~~~~~g~~~--~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~---L~~-~l~~i~~~~~~~~~~~~~~v~~v~~~~ 255 (434)
T 1zun_B 182 ADYLKFAEGIAFKP--TTMAFVPMSALKGDNVVNKSERSPWYAGQS---LME-ILETVEIASDRNYTDLRFPVQYVNRPN 255 (434)
T ss_dssp HHHHHHHHTTTCCC--SEEEEEECCTTTCTTTSSCCTTCTTCCSCC---TTH-HHHHSCCTTCCCSSSCEEECCEEECSS
T ss_pred HHHHHHHHHhCCCc--cCceEEEEeccCCCCcccccccCccccCch---HHH-HHhcCCCcccCCCCCcEEEEEEEeccC
Confidence 88888887776311 1368999999999865543221 2222222 333 345678888778899999999988877
Q ss_pred ccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCC--CCCcCCeeee
Q 006610 275 YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT--KPSIGHTVAN 352 (639)
Q Consensus 275 ~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~--~~~~Gdtl~~ 352 (639)
+.|+...|||.+|+|++||.|.+.+.+ ...+|++|..++ .++++|.|||+|++...+ +++.||+||+
T Consensus 256 ~~~~g~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~ 324 (434)
T 1zun_B 256 LNFRGFAGTLASGIVHKGDEIVVLPSG-------KSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVH 324 (434)
T ss_dssp SSCCEEEEECCBSCEETTCEEEETTTC-------CEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEE
T ss_pred CCceEEEEEEecceEeCCCEEEEecCC-------eEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEEC
Confidence 788889999999999999999998752 467899998875 379999999999886433 5789999999
Q ss_pred cCC
Q 006610 353 TEV 355 (639)
Q Consensus 353 ~~~ 355 (639)
++.
T Consensus 325 ~~~ 327 (434)
T 1zun_B 325 ADN 327 (434)
T ss_dssp TTS
T ss_pred CCC
Confidence 765
No 22
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=4.9e-37 Score=338.60 Aligned_cols=283 Identities=25% Similarity=0.332 Sum_probs=236.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCC-------------------CccccccccccccccceeEeeeeEEEeecCc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWREN 119 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~ 119 (639)
...||+++||+|||||||+++|++.++... ...+++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 358999999999999999999998754321 1124678889999999999999999999999
Q ss_pred eEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCch-------hHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHH
Q 006610 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLA-------QTKFVLAKALKYGLR-PILLLNKVDRPAVSEERC 191 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~-------qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~ 191 (639)
+++|||||||.+|...+.++++.+|++||||||.+|.++ ||++++..+...++| +|+|+||+|+..++.+++
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999998877 999999999999998 788999999986677777
Q ss_pred HHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCC-Ccccc------c---chHHHHHHHHhhCCCCCCCCCC
Q 006610 192 DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADV------R---NMSQLLDAIIRHVPPPKASLDA 261 (639)
Q Consensus 192 ~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~------~---gl~~Lld~I~~~lP~p~~~~~~ 261 (639)
+++.+++.+++..+++..+ ++|++++||++|.+..+.... +++.. . ....|+++| +.+|+|....+.
T Consensus 166 ~~i~~~~~~~l~~~g~~~~--~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l-~~~~~p~~~~~~ 242 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNPK--TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHTCCGG--GCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCCcc--CceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHh-hccCCCcccCCC
Confidence 7788888888888776432 368999999999976543322 22211 0 134688885 457888888899
Q ss_pred CceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--c
Q 006610 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (639)
Q Consensus 262 p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~ 339 (639)
||+++|..++++++.|++++|||.+|+++.||.|.+.+.+ ...+|.+|..+ ..++++|.|||+|+| .
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~----~~~~~~a~aG~~v~i~l~ 311 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG-------VTTEVKSVEMH----HEQLEQGVPGDNVGFNVK 311 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT-------EEEEEEEEEET----TEECSCBCTTCEEEEEES
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC-------ceEEEeEEEEC----CeEEEEEcCCCEEEEEEc
Confidence 9999999999999999999999999999999999998752 56789999864 358999999999887 4
Q ss_pred CC--CCCCcCCeeeecCC
Q 006610 340 GM--TKPSIGHTVANTEV 355 (639)
Q Consensus 340 gl--~~~~~Gdtl~~~~~ 355 (639)
|+ ++++.||+|+++++
T Consensus 312 gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 312 NVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp SCCTTTSCTTCEEEETTS
T ss_pred CCcccccCceeEEecCCC
Confidence 66 57899999999864
No 23
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=350.06 Aligned_cols=289 Identities=24% Similarity=0.273 Sum_probs=245.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC-------------------ccccccccccccccceeEeeeeEEEeecC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~e~ergiTi~~~~~~~~~~~ 118 (639)
....||+|+||+|||||||+++|++..+.... ..+++|....|+++|+|+......+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 34679999999999999999999977553211 24678899999999999999999999999
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-------CchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (639)
++++|||||||.+|...+..+++.+|++|+||||.+| ..+|+++++..+...++| +|+|+||+|+..++...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 9999999999999999999999999999999999987 568999999999999987 78899999998877777
Q ss_pred HHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccC----CCcccccchHHHHHHHHhhCCC--CCCCCCCCce
Q 006610 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTK----DPPADVRNMSQLLDAIIRHVPP--PKASLDAPFQ 264 (639)
Q Consensus 191 ~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~----~~~~~~~gl~~Lld~I~~~lP~--p~~~~~~p~~ 264 (639)
+.++.+++..++..+++... .+|++++||++|.+...... .+|+.+..+.++|+.+...+|. |....+.||+
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~--~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGG--GCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHhhccccc--CccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 88888888888888877543 36899999999997765532 2455555677777777666765 5667789999
Q ss_pred eEEEeeeeec---ccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeee----CCceeeeccCCCCceEE
Q 006610 265 MLVTMMEKDF---YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK----GTGMVLIDSAGAGDIIS 337 (639)
Q Consensus 265 ~~V~~~~~d~---~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~----g~~~~~v~~a~aGdIv~ 337 (639)
+.|..++..+ +.|+++.|||.+|+|++||.|.+.+.+ ...+|++|+.+. |..+.++++|.|||+|+
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~-------~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~ 475 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE-------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVT 475 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT-------EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEE
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC-------ceEEEEEEEEcccccccccccccceecCCCcce
Confidence 9999999987 489999999999999999999998753 567899999874 66778999999999998
Q ss_pred e--cCC--CCCCcCCeeeecCC
Q 006610 338 V--AGM--TKPSIGHTVANTEV 355 (639)
Q Consensus 338 i--~gl--~~~~~Gdtl~~~~~ 355 (639)
| .++ .+++.||+||+++.
T Consensus 476 l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 476 LKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp EEESSCCTTSCCTTCEEBCSTT
T ss_pred EEeeeccHhhCcceEEccCCCC
Confidence 8 444 78999999999876
No 24
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=8.2e-37 Score=357.60 Aligned_cols=280 Identities=28% Similarity=0.386 Sum_probs=220.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHc---CC-CCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQC---GA-DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~---g~-~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
...+||+++||+|||||||+++|++.. |. .....+.+|..+.|+++|+|+......+.+++++++|||||||.+|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999999753 21 11122367888999999999999888888889999999999999999
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+.++++.+|++|||||+++|+++||+++|..+...++| +|+|+||+|+.. +.+.++.+.+++.+++..+++...
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~~~-- 450 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFPGD-- 450 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSCTT--
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-chhhHHHHHHHHHHHHHhcccccc--
Confidence 9999999999999999999999999999999999999999 588999999975 444556667788888887776432
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~g 292 (639)
++|++++||++|++.. .....|+.+|+++|.+++|.|..+.++||++.|..++.+++.|++++|||++|+|++|
T Consensus 451 ~vp~IpvSAktG~ng~------~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvG 524 (1289)
T 3avx_A 451 DTPIVRGSALKALEGD------AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG 524 (1289)
T ss_dssp TCCEEECCSTTTTTCC------HHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETT
T ss_pred ceeEEEEEeccCCCCC------ccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecC
Confidence 4789999999995210 0112379999999999999998888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC--CCCCcCCeeeecCC
Q 006610 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTEV 355 (639)
Q Consensus 293 d~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl--~~~~~Gdtl~~~~~ 355 (639)
|.|.+.+.++ ....+|++|..+. .++++|.|||+|++ .|+ +++..||+||+++.
T Consensus 525 D~V~I~ps~~-----~~~~kVksI~~~~----~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 525 EEVEIVGIKE-----TQKSTCTGVEMFR----KLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp CEEEEESSSS-----CEEEEEEEEECSS----CEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CEEEEecCCC-----ceeEEEEEEeecC----ceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 9999987532 1567899997653 58999999999877 466 57999999998764
No 25
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=4.8e-37 Score=346.91 Aligned_cols=302 Identities=23% Similarity=0.252 Sum_probs=229.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec------------------Cce
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------ENE 120 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~------------------~~~ 120 (639)
+.++|+|+||+|||||||+++|++.... +. ..+|+|.......+.|. ...
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 71 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPG 71 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--------cc----cCCceecccCeEEEeechhhhhccccccccccccccCC
Confidence 4578999999999999999999976321 11 11355554444443321 225
Q ss_pred EEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC-CH-----------
Q 006610 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV-SE----------- 188 (639)
Q Consensus 121 i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~-~~----------- 188 (639)
++|||||||.+|..++.++++.+|++|+|+|+++|+++||.+.|..+...++|+|+|+||+|+... ..
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999642 11
Q ss_pred ---H----HHHHHHHHHHHHHHhcCCCCc--------cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 189 ---E----RCDEVESLVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 189 ---~----~~~~v~~~i~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
. .+.+...++.+.+.+.++..+ ...+|++++||++|. |+++|+++|..++|
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~--------------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE--------------GIPELLTMLMGLAQ 217 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC--------------CchhHHHHHHhhcc
Confidence 1 122222333344444444221 235799999999999 99999999998776
Q ss_pred CCC-----CCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeee--------
Q 006610 254 PPK-----ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK-------- 320 (639)
Q Consensus 254 ~p~-----~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~-------- 320 (639)
.|. .++++|++++|+++..+++.|+++++||++|+|++||.|.+.+.+. ....||++|+.+.
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~-----~~~~rV~~i~~~~~~~elr~~ 292 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKD-----VISTRIRSLLKPRPLEEMRES 292 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSS-----EEEEECCEEEEECCCC----C
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCC-----ceeEEEeEEEeccccchhhhc
Confidence 432 3568999999999999999999999999999999999999986531 2356999999873
Q ss_pred CCceeeeccCC--CCceEEecCCCCCCcCCeeeecCCCc--------CCCCccCCCCeeeeeeeecCCCCCCCCCcccch
Q 006610 321 GTGMVLIDSAG--AGDIISVAGMTKPSIGHTVANTEVTT--------ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTG 390 (639)
Q Consensus 321 g~~~~~v~~a~--aGdIv~i~gl~~~~~Gdtl~~~~~~~--------~l~~~~~~~P~~~~~~~~~~~p~~~~~~~~~~~ 390 (639)
+.+..++++|. +|+++++.||+++.+||||+..+++. .+..+.+..+.+.+.+.+.. ..+.
T Consensus 293 ~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~---------~gs~ 363 (594)
T 1g7s_A 293 RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADT---------LGSL 363 (594)
T ss_dssp CCSEEECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESS---------HHHH
T ss_pred cCCceEccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCC---------CCCH
Confidence 55678899998 99999999999999999999886541 12222344455666666654 2566
Q ss_pred hhHHhHhhhh
Q 006610 391 GKIGARLMSE 400 (639)
Q Consensus 391 ~kl~~~L~k~ 400 (639)
+.|.+.|.++
T Consensus 364 eal~~~l~~~ 373 (594)
T 1g7s_A 364 EAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888999876
No 26
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=9.8e-37 Score=326.86 Aligned_cols=239 Identities=17% Similarity=0.175 Sum_probs=204.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
+||+++||+|||||||+++|+ ++|+|+......+.+++++++|||||||.+|...+.+++
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~--------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~ 81 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLG--------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITAL 81 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTS--------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH--------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHH
Confidence 399999999999999999997 569999999999999999999999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEc-CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEe
Q 006610 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLN-KVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviN-KiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~ 218 (639)
+.+|++||||| .+|+++||++++..+...++|. |+++| |+|+ . ....+++.+++.+++...+.. .+|+++
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~~~~~~i~~~l~~~~~~----~~~ii~ 153 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAIDELKAKLKVITSGTVLQ----DWECIS 153 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHHHHHHHHHHHTTTSTTT----TCEEEE
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHHHHHHHHHHHHHhcCCC----ceEEEe
Confidence 99999999999 9999999999999999999998 99999 9998 3 344455667777776655432 378999
Q ss_pred --ccccc---CCCCCcccCCCcccccchHHHHHHHHhhCCCCCC---C-CCCCceeEEEeeeeecccceEEEEEEEeeee
Q 006610 219 --ASAKE---GWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA---S-LDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (639)
Q Consensus 219 --~SA~~---g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~---~-~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l 289 (639)
+||++ |. |+++|+++|.+++|+|.. . ...|++++|..++..++.|++++|||++|+|
T Consensus 154 ~~~SA~~~~~g~--------------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l 219 (370)
T 2elf_A 154 LNTNKSAKNPFE--------------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGIS 219 (370)
T ss_dssp CCCCTTSSSTTT--------------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEE
T ss_pred cccccccCcCCC--------------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEE
Confidence 99999 77 999999999999876521 1 3456778899999999999999999999999
Q ss_pred ecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEec--C--CCCCCcCCeeee
Q 006610 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--G--MTKPSIGHTVAN 352 (639)
Q Consensus 290 ~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~--g--l~~~~~Gdtl~~ 352 (639)
++||.|.+.+.+ ...+|++|+.+. .++++|.|||+|++. | .+++++||+||+
T Consensus 220 ~~gd~v~~~p~~-------~~~~V~~i~~~~----~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 220 KDKDKTKIFPLD-------RDIEIRSIQSHD----VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp ETTCEEEEETTT-------EEEEEEEEEETT----EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred eeCCEEEECCCC-------cEEEEeEEEECC----CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999999998752 678999997652 689999999999885 5 468999999997
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=6.1e-36 Score=325.77 Aligned_cols=265 Identities=27% Similarity=0.334 Sum_probs=211.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--------------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-------------------- 117 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-------------------- 117 (639)
+..+||+++||+|||||||+++|++. ..|..+.|+++|+|+...+..+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~---------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~ 78 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV---------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHE 78 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC---------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCB
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC---------ccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcc
Confidence 45689999999999999999999843 2467788999999998877665541
Q ss_pred ---CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-CcEEEEcCCCCCCCCHHHHH
Q 006610 118 ---ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCD 192 (639)
Q Consensus 118 ---~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~ 192 (639)
...++|||||||.+|..++.+++..+|++||||||.+|. ++||++++..+..+++ |+|+|+||+|+.. .....
T Consensus 79 ~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~--~~~~~ 156 (410)
T 1kk1_A 79 TEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD--KEKAL 156 (410)
T ss_dssp CEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC--HHHHH
T ss_pred cccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC--HHHHH
Confidence 168999999999999999999999999999999999997 9999999999988887 5678899999954 33334
Q ss_pred HHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeee-
Q 006610 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMME- 271 (639)
Q Consensus 193 ~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~- 271 (639)
+..+++.+++..... ..+|++++||++|. |+++|+++|.+++|.|..+.+.|++++|...+
T Consensus 157 ~~~~~i~~~l~~~~~----~~~~~i~vSA~~g~--------------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~ 218 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVA----ENAPIIPISALHGA--------------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFD 218 (410)
T ss_dssp HHHHHHHHHHTTSTT----TTCCEEECBTTTTB--------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCc----CCCeEEEeeCCCCC--------------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEe
Confidence 455666666654322 14789999999998 99999999999999998888999999998765
Q ss_pred -------eecccceEEEEEEEeeeeecCCEEEEeeccC---CCCce--eEEeEEEEEEeeeCCceeeeccCCCCceEEec
Q 006610 272 -------KDFYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (639)
Q Consensus 272 -------~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~---~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~ 339 (639)
++++.|++++|||++|+|++||.|.+.+... .+... ....+|.+|+.. +.++++|.|||+|++.
T Consensus 219 v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~----~~~v~~a~aG~~v~~~ 294 (410)
T 1kk1_A 219 VNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG----GQFVEEAYPGGLVGVG 294 (410)
T ss_dssp CSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEE
T ss_pred ccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEEC----CeEecEEcCCCEEEEE
Confidence 3567899999999999999999999986421 00000 024678888753 4689999999998884
Q ss_pred -C----C--CCCCcCCeeeecCC
Q 006610 340 -G----M--TKPSIGHTVANTEV 355 (639)
Q Consensus 340 -g----l--~~~~~Gdtl~~~~~ 355 (639)
+ + .++..||+||+++.
T Consensus 295 ~~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 295 TKLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp ESSCGGGTGGGTTTTCEEECTTC
T ss_pred EecCcccchhhccceeEEecCCC
Confidence 3 2 36778999998764
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.9e-35 Score=319.20 Aligned_cols=266 Identities=27% Similarity=0.322 Sum_probs=199.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-------------------
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------- 117 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~------------------- 117 (639)
.+..+||+++||+|||||||+++|++. ..|....|+++|+|+...+..+.+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~---------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~ 75 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV---------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLA 75 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC---------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCC
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC---------ccccCcccccCCcEEEecccccccccccccccccccccccccCc
Confidence 345789999999999999999999843 2356778889999998766544331
Q ss_pred ----CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-CcEEEEcCCCCCCCCHHHH
Q 006610 118 ----ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERC 191 (639)
Q Consensus 118 ----~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~ 191 (639)
.+.++|||||||.+|...+.+.+..+|++|||+|+.+|. ++||.+++..+..+++ |+|+|+||+|+...+. .
T Consensus 76 ~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~--~ 153 (408)
T 1s0u_A 76 ETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ--A 153 (408)
T ss_dssp BCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT--T
T ss_pred ccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH--H
Confidence 168999999999999999999999999999999999997 9999999998888887 5789999999975432 1
Q ss_pred HHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeee
Q 006610 192 DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMME 271 (639)
Q Consensus 192 ~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~ 271 (639)
.+..+++.+++..... ..+|++++||++|. |+++|+++|.+++|.|..+.++|++++|.+.+
T Consensus 154 ~~~~~~i~~~l~~~~~----~~~~~i~vSA~~g~--------------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f 215 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIA----ENAPIIPISAHHEA--------------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSF 215 (408)
T ss_dssp TTHHHHHHHHHTTSTT----TTCCEEEC--------------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCC----CCCeEEEeeCCCCC--------------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEE
Confidence 2234455555554322 14789999999998 99999999999999998888999999998776
Q ss_pred e--------ecccceEEEEEEEeeeeecCCEEEEeeccC---CCCce--eEEeEEEEEEeeeCCceeeeccCCCCceEEe
Q 006610 272 K--------DFYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338 (639)
Q Consensus 272 ~--------d~~~G~i~~grV~sG~l~~gd~v~~~~~~~---~~~~~--~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i 338 (639)
. +++.|.++.|+|.+|+|++||.|.+.+... .+... ....+|++|+.+ +.++++|.|||+|++
T Consensus 216 ~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~ 291 (408)
T 1s0u_A 216 DINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAG----NTILRKAHPGGLIGV 291 (408)
T ss_dssp CCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEET----TEEESEECSSSCEEE
T ss_pred eecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEEC----CEEcCEEeCCCeEEE
Confidence 3 456899999999999999999999986421 00000 125688888874 368999999999998
Q ss_pred c-----CC--CCCCcCCeeeecCC
Q 006610 339 A-----GM--TKPSIGHTVANTEV 355 (639)
Q Consensus 339 ~-----gl--~~~~~Gdtl~~~~~ 355 (639)
. ++ +++..||+||+++.
T Consensus 292 ~~~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 292 GTTLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp ECSSCGGGTGGGTTTTCEEESTTC
T ss_pred EeccCcccchhhccceeEEECCCC
Confidence 3 22 36788999998764
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=5.4e-36 Score=332.01 Aligned_cols=257 Identities=26% Similarity=0.387 Sum_probs=207.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..||+++||+|||||||+++|++.. ....+|....|+++|+|++.....+.++++.++|||||||.+|...+.+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~-----~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIA-----STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCC-----cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence 35799999999999999999998652 1345678889999999999999999999999999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCCccccccEE
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL-GATDEQLDFPVL 217 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~-g~~~~~~~~Pvi 217 (639)
+++.+|++|||||+.+|+++||.+++..+...++|.|+|+||+|+.. .+.++++.+++.+++... ++. .+|++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~----~~~ii 166 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG--TEEIKRTEMIMKSILQSTHNLK----NSSII 166 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC--HHHHHHHHHHHHHHHHHSSSGG----GCCEE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc--chhHHHHHHHHHHHHhhhcccc----cceEE
Confidence 99999999999999999999999999999999999999999999953 555666777787777665 432 36899
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC--CCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEE
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP--KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKV 295 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p--~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v 295 (639)
++||++|. |+++|+++|.+.+|.| ..+.++||++.|..++..++.|.++.|+|.+|+|++||.|
T Consensus 167 ~vSA~~g~--------------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v 232 (482)
T 1wb1_A 167 PISAKTGF--------------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDEL 232 (482)
T ss_dssp ECCTTTCT--------------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEE
T ss_pred EEECcCCC--------------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEE
Confidence 99999998 9999999999988766 6677889999999999999999999999999999999999
Q ss_pred EEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCCC--CCCcCCeee
Q 006610 296 HGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVA 351 (639)
Q Consensus 296 ~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~Gdtl~ 351 (639)
.+.+.+ ...+|++|..+. .++++|.|||.|++ .|++ +++.||+|+
T Consensus 233 ~~~p~~-------~~~~V~~i~~~~----~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 233 KVLPIN-------MSTKVRSIQYFK----ESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CCTTTC-------CCEEECCBCGGG----SCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred EECCCC-------cEEEEeEEEECC----eEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 997643 345888887653 57899999999877 4764 688999994
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=9.5e-34 Score=307.77 Aligned_cols=274 Identities=20% Similarity=0.237 Sum_probs=209.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCC---ccccccccccccccceeEeeeeEEEeec-----CceEEEEeCCCC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---HERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPGH 129 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---~~~v~D~~~~e~ergiTi~~~~~~~~~~-----~~~i~iIDTPGh 129 (639)
+...||+++||+|||||||+++|++....... ..+..........++++.......+.+. ..+++|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 45679999999999999999999874321110 0111111222334455443332222222 378999999999
Q ss_pred CCchHHHHHHHhhccEEEEEEeCCCCC-chhHHHHHHHHHHcCC-CcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 130 ADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 130 ~dF~~ev~~~l~~aD~allVVDa~~g~-~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
.+|...+.++++.+|++|+|+|+.++. ++|+++++..+...+. |+|+|+||+|+.. .....+..+++.+++...+.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS--KEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc--hHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999997 9999999999998887 6889999999954 44445556666666655443
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeee--------ecccceE
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEK--------DFYLGRI 279 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~--------d~~~G~i 279 (639)
. .+|++++||++|. |+++|+++|.+++|.|..+.++||++.|.+.+. +++.|.+
T Consensus 164 ~----~~~ii~vSA~~g~--------------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v 225 (403)
T 3sjy_A 164 E----NVPIIPVSALHKI--------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGV 225 (403)
T ss_dssp T----TCCEEECBTTTTB--------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCE
T ss_pred C----CCEEEEEECCCCc--------------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcE
Confidence 2 4789999999998 999999999999999988889999999998764 5568999
Q ss_pred EEEEEEeeeeecCCEEEEeeccCC---CC--ceeEEeEEEEEEeeeCCceeeeccCCCCceEEec-----CC--CCCCcC
Q 006610 280 LTGRVSSGVVSVGDKVHGLRITDS---GT--EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-----GM--TKPSIG 347 (639)
Q Consensus 280 ~~grV~sG~l~~gd~v~~~~~~~~---~~--~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~-----gl--~~~~~G 347 (639)
++|+|.+|+|++||.|.+.+.... +. -.....+|++|+.+ +.++++|.|||+|++. ++ +++..|
T Consensus 226 ~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G 301 (403)
T 3sjy_A 226 IGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIGTYLDPSLTKADNLLG 301 (403)
T ss_dssp EEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEESSCHHHHGGGTTTT
T ss_pred EEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEEeccccccchhhhccc
Confidence 999999999999999999764210 00 00014689999874 4699999999999983 22 368899
Q ss_pred CeeeecCC
Q 006610 348 HTVANTEV 355 (639)
Q Consensus 348 dtl~~~~~ 355 (639)
|+||+++.
T Consensus 302 ~vl~~~~~ 309 (403)
T 3sjy_A 302 SIITLADA 309 (403)
T ss_dssp CEEEETTC
T ss_pred cEEeCCCC
Confidence 99999865
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=327.33 Aligned_cols=252 Identities=26% Similarity=0.310 Sum_probs=207.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+.++|+++||+|||||||+++|+... ......+|+|+......+.+++..++|||||||.+|...+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRAR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------------HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------------CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 56899999999999999999998752 122334789998888888889999999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc--ccccE
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ--LDFPV 216 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~--~~~Pv 216 (639)
+++.+|++|||+|+.+|+++||.++|..+...++|+|+++||+|++++++++ +.++ +...+...+. .++|+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~---v~~~----l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR---VKNE----LSQYGILPEEWGGESQF 143 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC---TTCC----CCCCCCCTTCCSSSCEE
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH---HHHH----HHHhhhhHHHhCCCccE
Confidence 9999999999999999999999999999999999999999999998765432 1111 1111111111 13799
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhC--CCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCE
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV--PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDK 294 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l--P~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~ 294 (639)
+++||++|. |+++|+++|.... +.+...++.|+.++|++.+.+++.|.+++++|++|+|++||.
T Consensus 144 v~vSAktG~--------------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~ 209 (501)
T 1zo1_I 144 VHVSAKAGT--------------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDI 209 (501)
T ss_dssp EECCTTTCT--------------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCE
T ss_pred EEEeeeecc--------------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCE
Confidence 999999999 9999999998653 444556788999999999999999999999999999999999
Q ss_pred EEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC-CcCCeeeecCC
Q 006610 295 VHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEV 355 (639)
Q Consensus 295 v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~ 355 (639)
|.+.+ ...+|+.|+..+| .++++|.||+.+.|.|++++ ..||+++...+
T Consensus 210 v~~g~---------~~~kVr~i~~~~g---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 210 VLCGF---------EYGRVRAMRNELG---QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRD 259 (501)
T ss_dssp EEEEB---------SSCEEEEECCTTT---TSEEEECCSSCSSSEEECSCCCTTEEEEEECS
T ss_pred EEEcc---------ceeEEEEEEecCC---CcCcEeccCCcEEEeCCCCCCCCCCEEEecCC
Confidence 98753 2357888876655 46899999999999999874 78999986544
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2.3e-35 Score=328.20 Aligned_cols=255 Identities=26% Similarity=0.310 Sum_probs=209.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCchHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+.++|+++||+|||||||+++|+.. .......+|+|.......+.+ ++.+++|||||||.+|...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~------------~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT------------QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH------------HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC------------CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH
Confidence 3567999999999999999999976 223334568888877777777 567999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEE
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi 217 (639)
++++.+|++|||+|+.+|.++||.++|..+...++|+|+|+||+|++.+++.. +.+++.++ .+.......++|++
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~---v~~~l~~~--~~~~e~~~~~~~iv 145 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEK---VKKELLAY--DVVCEDYGGDVQAV 145 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCS---SSSHHHHT--TSCCCCSSSSEEEC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHH---HHHHHHhh--hhhHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999997665432 12222211 11111112357899
Q ss_pred ecccccCCCCCcccCCCcccccchHHHHHHHHhhCC--CCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEE
Q 006610 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP--PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKV 295 (639)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP--~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v 295 (639)
++||++|. |+++|+++|...++ .+..+++.|+++.|++.+.+++.|++++|+|.+|+|++||.|
T Consensus 146 ~vSAktG~--------------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 146 HVSALTGE--------------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp CCCSSSSC--------------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred EEECCCCC--------------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999 99999999987654 455667899999999999999999999999999999999988
Q ss_pred EEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEecCCCCC-CcCCeeeecCCC
Q 006610 296 HGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT 356 (639)
Q Consensus 296 ~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~Gdtl~~~~~~ 356 (639)
.... ...+|+.|+.++| .++++|.|||+|+|.|++++ ..||+|+..+++
T Consensus 212 ~~g~---------~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 212 VAGK---------SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp CCSS---------CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EeCC---------ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 4321 3468999988766 57999999999999999885 889999987654
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.85 E-value=1.4e-21 Score=212.03 Aligned_cols=184 Identities=22% Similarity=0.278 Sum_probs=133.2
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc-eEEEEeCCCCCCch
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHADFG 133 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~-~i~iIDTPGh~dF~ 133 (639)
......++|+|+|+.|+|||||+++|+... ....+..+|+|+......+.+.+. +++|||||||.+|.
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~-----------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQN-----------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG 97 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC------------------------CCCCEEEEEETTTEEEEEEECSSTTCCC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCC-----------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc
Confidence 344567899999999999999999998762 223456678999999999998876 99999999999885
Q ss_pred H-------HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 134 G-------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 134 ~-------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
. .+..+++.+|++|+|+|+ +...++..++..+.+.++|+|+|+||+|+...+.. +..+ .+
T Consensus 98 ~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~---~~~~---~l----- 164 (423)
T 3qq5_A 98 ELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE---ELKG---LY----- 164 (423)
T ss_dssp TTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT---HHHH---HS-----
T ss_pred chhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH---HHHH---HH-----
Confidence 3 356788899999999999 78899999999999999999999999999776542 1111 11
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCC-------CCCCceeEEEeeeeecccce
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS-------LDAPFQMLVTMMEKDFYLGR 278 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~-------~~~p~~~~V~~~~~d~~~G~ 278 (639)
.+...+|++++||++|. |+++++++|.+.+|.+... ..+.+.++|..++.....|+
T Consensus 165 --~~~~g~~v~~vSAktg~--------------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr 227 (423)
T 3qq5_A 165 --ESRYEAKVLLVSALQKK--------------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGR 227 (423)
T ss_dssp --SCCTTCCCCCCSSCCTT--------------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTC
T ss_pred --HHHcCCCEEEEECCCCC--------------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCc
Confidence 12234689999999998 9999999999999765211 13445666655554444444
No 34
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=9.7e-21 Score=187.29 Aligned_cols=174 Identities=18% Similarity=0.137 Sum_probs=124.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe-ecCceEEEEeCCCCCC---
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHAD--- 131 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~-~~~~~i~iIDTPGh~d--- 131 (639)
...+.++|+|+|+.|+|||||+++|+..... .......|.|.......+. +++..++||||||+.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 94 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRL----------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV 94 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSS----------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCC
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcc----------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccC
Confidence 3445789999999999999999999876311 1122234556665555565 5678999999999744
Q ss_pred -------chHHHHHHHhh---ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 132 -------FGGEVERVVGM---VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 132 -------F~~ev~~~l~~---aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
|...+..+++. +|++|+|+|+.++.......++..+...++|+++|+||+|+.. .....+..+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~ 172 (223)
T 4dhe_A 95 PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT--RQESINALRATQKS 172 (223)
T ss_dssp CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC--HHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC--hhhHHHHHHHHHHH
Confidence 34444555555 8889999999999888888899998889999999999999854 33333344444444
Q ss_pred HHhc---CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCC
Q 006610 202 FANL---GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS 258 (639)
Q Consensus 202 ~~~~---g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~ 258 (639)
+..+ +. ...+|++++||++|. |+++|+++|.+.++.+...
T Consensus 173 l~~~~~~~~---~~~~~~~~~SA~~g~--------------gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 173 LDAYRDAGY---AGKLTVQLFSALKRT--------------GLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHTC---CSCEEEEEEBTTTTB--------------SHHHHHHHHHHHHC-----
T ss_pred HHhhhhccc---CCCCeEEEeecCCCc--------------CHHHHHHHHHHhcCccCCc
Confidence 4332 11 123689999999999 9999999999999876543
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=7.3e-21 Score=180.69 Aligned_cols=162 Identities=28% Similarity=0.371 Sum_probs=123.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
++.++|+++|+.|+|||||+++|+..... .....+++.......+.+++..++||||||+.+|.....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT------------EQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS------------CSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc------------cCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH
Confidence 35679999999999999999999875321 112234444445556677888999999999999988777
Q ss_pred HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc--ccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL--DFP 215 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~--~~P 215 (639)
+++..+|++|+|+|+.++...++...+..+...++|+++|+||+|+...+... +. ..+...+...... .++
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~----~~~~~~~~~~~~~~~~~~ 146 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDR---VM----QELMEYNLVPEEWGGDTI 146 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHH---HH----HHHTTTTCCBTTTTSSEE
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHH---HH----HHHHhcCcChhHcCCccc
Confidence 88889999999999999888899888888888899999999999997654422 22 1222222211122 268
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |+++|+++|.+.+
T Consensus 147 ~~~~Sa~~~~--------------gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 147 FCKLSAKTKE--------------GLDHLLEMILLVS 169 (178)
T ss_dssp EEECCSSSSH--------------HHHHHHHHHHHHH
T ss_pred EEEEecCCCC--------------CHHHHHHHHHHhh
Confidence 9999999998 9999999998654
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.82 E-value=7.5e-20 Score=170.55 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=115.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------c
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------F 132 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d-------F 132 (639)
+++|+++|+.|+|||||+++|+.... ...+...++|.......+.+++..++||||||+.+ +
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 69 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRS-----------AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKI 69 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCe-----------eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHH
Confidence 36899999999999999999997631 11223345666666677778888999999999987 4
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...+..+++.+|++|+|+|+.++.......+++.+...++|+++|+||+|+...+ +++.++. .++.
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~-~~~~----- 135 (161)
T 2dyk_A 70 QEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE--------LYLGPLY-GLGF----- 135 (161)
T ss_dssp HHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG--------GGCGGGG-GGSS-----
T ss_pred HHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch--------HhHHHHH-hCCC-----
Confidence 5566778899999999999999877777777777777899999999999985421 1111222 2332
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+++++||++|. |+++++++|.+.+|
T Consensus 136 -~~~~~~Sa~~~~--------------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 -GDPIPTSSEHAR--------------GLEELLEAIWERLP 161 (161)
T ss_dssp -CSCEECBTTTTB--------------SHHHHHHHHHHHCC
T ss_pred -CCeEEEecccCC--------------ChHHHHHHHHHhCc
Confidence 168999999998 99999999999886
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=5.9e-20 Score=201.24 Aligned_cols=152 Identities=23% Similarity=0.303 Sum_probs=113.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------ 131 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------ 131 (639)
+..++|+++|++|+|||||+++|++.. ....+...|+|.+.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~-----------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 241 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEE-----------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 241 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST-----------TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCC-----------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccc
Confidence 356899999999999999999999762 223445678898888888999999999999999844
Q ss_pred ----chHH-HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 132 ----FGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 132 ----F~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
|... ...+++.+|++|+|+|+.++...|+..++..+.+.+.|+|+|+||+|+...+....+++.+++.+.+....
T Consensus 242 ~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 242 TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC
Confidence 3322 23578899999999999999999999999999999999999999999976554334455555555444332
Q ss_pred CCCccccccEEecccccCCC
Q 006610 207 ATDEQLDFPVLYASAKEGWA 226 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~ 226 (639)
.+|++++||++|.+
T Consensus 322 ------~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 322 ------YAPILFMSALTKKR 335 (436)
T ss_dssp ------TSCEEECCTTTCTT
T ss_pred ------CCCEEEEecccCCC
Confidence 25899999999993
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=9.3e-20 Score=189.87 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=120.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
+..+|+|+|++|+|||||+++|++..... .....+.|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i-----------vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~ 74 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP-----------ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGE 74 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC-----------CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee-----------ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHH
Confidence 45789999999999999999999764321 111223333333344567889999999999987
Q ss_pred -chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 132 -FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 132 -F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
|...+..+++.+|++|+|+|++++...++..+++.+.+. ++|+|+|+||+|+...+.. +.+.+..+ .+
T Consensus 75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~---~~-- 145 (301)
T 1wf3_A 75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE----AMKAYHEL---LP-- 145 (301)
T ss_dssp HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH----HHHHHHHT---ST--
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH----HHHHHHHh---cC--
Confidence 677888999999999999999999888888888888877 8999999999999643220 22222221 11
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+++++||++|. |+++|++.|.+.+|.
T Consensus 146 ----~~~~~~iSA~~g~--------------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 ----EAEPRMLSALDER--------------QVAELKADLLALMPE 173 (301)
T ss_dssp ----TSEEEECCTTCHH--------------HHHHHHHHHHTTCCB
T ss_pred ----cCcEEEEeCCCCC--------------CHHHHHHHHHHhccc
Confidence 1368999999998 999999999998864
No 39
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.5e-19 Score=188.90 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=126.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCCch----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFG---- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~dF~---- 133 (639)
..-.|+|+|++|+|||||+++|++.... ......+.|.......+.++ +.+++||||||+.++.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~-----------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~ 77 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS-----------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDV 77 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS-----------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc-----------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchh
Confidence 3568999999999999999999976321 12334566666666677777 8999999999997654
Q ss_pred ------HHHHHHHhhccEEEEEEeCCCCCchhHHHH-HHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 134 ------GEVERVVGMVEGAILVVDAGEGPLAQTKFV-LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 134 ------~ev~~~l~~aD~allVVDa~~g~~~qt~~~-l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
..+..+++.+|++|+|+|+.++...++..+ +..+...++|+++|+||+|+.. +.....+..+++.+ .++
T Consensus 78 l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~---~~~ 153 (308)
T 3iev_A 78 LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG-PAKNVLPLIDEIHK---KHP 153 (308)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSS-SGGGGHHHHHHHHH---HCT
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCC-CHHHHHHHHHHHHH---hcc
Confidence 677889999999999999999998888888 7777778999999999999862 22222333333322 222
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
. ..+++++||++|. |+++|++.|.+++|..
T Consensus 154 ~-----~~~i~~vSA~~g~--------------gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 154 E-----LTEIVPISALKGA--------------NLDELVKTILKYLPEG 183 (308)
T ss_dssp T-----CCCEEECBTTTTB--------------SHHHHHHHHHHHSCBC
T ss_pred C-----CCeEEEEeCCCCC--------------CHHHHHHHHHHhCccC
Confidence 1 2469999999998 9999999999999753
No 40
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=1.1e-19 Score=175.14 Aligned_cols=168 Identities=18% Similarity=0.174 Sum_probs=112.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc-ccccccccccceeEeeeeE-EEeecCceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-MDSISLERERGITIASKVT-GISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v-~D~~~~e~ergiTi~~~~~-~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
+...+|+++|+.|+|||||++.|... ......... ..........+.+...... .+....++++||||||+.+|...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45689999999999999999666543 111100000 0000011112222222222 33344578999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH---------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK---------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~---------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
+..+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+..... .+++.+++...+
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~ 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP------VEMVRAVVDPEG 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC------HHHHHHHHCTTC
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC------HHHHHHHHHhcC
Confidence 9999999999999999997766665554444333 4889999999999865321 223334444333
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
. .+++++||++|. |+++++++|.+.+
T Consensus 165 ~------~~~~~~Sa~~~~--------------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 K------FPVLEAVATEGK--------------GVFETLKEVSRLV 190 (198)
T ss_dssp C------SCEEECBGGGTB--------------THHHHHHHHHHHH
T ss_pred C------ceEEEEecCCCc--------------CHHHHHHHHHHHH
Confidence 2 279999999999 9999999998754
No 41
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=7.1e-19 Score=169.23 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=119.3
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC------
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG------ 128 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG------ 128 (639)
......++|+++|+.|+|||||+++|+..... ......+.|..... ...+.++.||||||
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~~~~~~~t~~~~~---~~~~~~~~i~Dt~G~~~~~~ 83 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-----------FVSKTPGKTRSINF---YLVNSKYYFVDLPGYGYAKV 83 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-----------CCCSSCCCCCCEEE---EEETTTEEEEECCCBSSSCC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-----------cccCCCCCccCeEE---EEECCcEEEEECCCCccccC
Confidence 33455789999999999999999999876311 11122234433322 22356799999999
Q ss_pred ----CCCchHHHHHHHhhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 129 ----HADFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 129 ----h~dF~~ev~~~l~~a---D~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
+..|...+..+++.+ |++++|+|+..+.......+++.+...++|+++|+||+|+.. ........+++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~ 161 (195)
T 3pqc_A 84 SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK--MSERAKKLEEHRKV 161 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC--GGGHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC--hHHHHHHHHHHHHH
Confidence 334555555566655 999999999988888888888888889999999999999854 23334455556555
Q ss_pred HHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+...+ .++++++||++|. |+++++++|.+.++
T Consensus 162 ~~~~~------~~~~~~~Sa~~~~--------------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 162 FSKYG------EYTIIPTSSVTGE--------------GISELLDLISTLLK 193 (195)
T ss_dssp HHSSC------CSCEEECCTTTCT--------------THHHHHHHHHHHHC
T ss_pred HhhcC------CCceEEEecCCCC--------------CHHHHHHHHHHHhh
Confidence 55433 2579999999999 99999999998765
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.80 E-value=4e-19 Score=169.08 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=113.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|+.|+|||||+++|+........ ....+.+.......+......++||||||+.+|...+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ----------ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTS----------CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcC----------CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHH
Confidence 4579999999999999999999976321110 111122333333333333568999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.+|++|+|+|+.+... .....++..+... ++|+++|+||+|+...+... .+++.++....+ +
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~ 149 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT----AEDAQTYAQENG-------L 149 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-------C
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC----HHHHHHHHHHcC-------C
Confidence 9999999999999987654 3334555555554 77899999999986433211 122333333332 5
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+++++||++|. |+++++++|.+.++..
T Consensus 150 ~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 150 FFMETSAKTAT--------------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp EEEECCSSSCT--------------THHHHHHHHHHTCC--
T ss_pred EEEEEECCCCC--------------CHHHHHHHHHHHHHhc
Confidence 79999999998 9999999999988754
No 43
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.80 E-value=5.4e-19 Score=170.60 Aligned_cols=162 Identities=19% Similarity=0.288 Sum_probs=113.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC--------
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG-------- 128 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG-------- 128 (639)
..+..+|+++|+.|+|||||+++|+...... ......|.|.......+ +.+++||||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~ 86 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLA----------RTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSK 86 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------CCEEEEEE---TTTEEEEECCCBCCCSSCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc----------ccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCH
Confidence 3457899999999999999999998652111 11122344444333322 34799999999
Q ss_pred --CCCchHHHHHHHhhc---cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 129 --HADFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 129 --h~dF~~ev~~~l~~a---D~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
+..|...+..+++.+ |++++|+|+.++.......+++.+...++|+++|+||+|+... .......+++.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 87 SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK--GKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--HHHHHHHHHHHHHHc
Confidence 445555566777766 9999999999988888888888888899999999999999643 223333344443332
Q ss_pred hcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
. ...++++++||++|. |+++++++|.+.++
T Consensus 165 ---~---~~~~~~~~~Sa~~~~--------------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 ---I---DPEDELILFSSETKK--------------GKDEAWGAIKKMIN 194 (195)
T ss_dssp ---C---CTTSEEEECCTTTCT--------------THHHHHHHHHHHHT
T ss_pred ---c---cCCCceEEEEccCCC--------------CHHHHHHHHHHHhc
Confidence 1 123679999999998 99999999988764
No 44
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=2.7e-19 Score=197.02 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=127.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC---------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG--------- 128 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG--------- 128 (639)
....+|+++|++|+|||||+++|+... ....+...|+|.+.....+.+++.+++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~-----------~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 261 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE-----------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 261 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST-----------TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCC
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC-----------ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccch
Confidence 456899999999999999999999651 223445568888888888889999999999999
Q ss_pred -CCCchHHH-HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 129 -HADFGGEV-ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 129 -h~dF~~ev-~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
+..|.... ..+++.+|++|+|+|+.++...++..++..+.+.++|+|+|+||+|+...+....+++.+.+.+.+...+
T Consensus 262 ~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T 4dcu_A 262 TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 341 (456)
T ss_dssp CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCC
Confidence 55665543 3588999999999999999999999999999999999999999999976555455556666655544333
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+|++++||++|. |+++|++++.+.+
T Consensus 342 ------~~~~~~~SA~~g~--------------gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 342 ------YAPILFMSALTKK--------------RIHTLMPAIIKAS 367 (456)
T ss_dssp ------TSCEEECCTTTCT--------------TGGGHHHHHHHHH
T ss_pred ------CCCEEEEcCCCCc--------------CHHHHHHHHHHHH
Confidence 2579999999999 8888888877654
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=3.6e-19 Score=172.30 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=114.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev 136 (639)
....++|+|+|+.|+|||||+++|+....... + ..-|+......+.+.++.++||||||+.+|...+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-----------~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-----------H--ITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLW 80 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC---------------C--CCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-----------c--cccccceeEEEEEeCCEEEEEEECCCCHhHHHHH
Confidence 34578999999999999999999986532210 0 0112223344567888999999999999999888
Q ss_pred HHHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHHc-----------CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 137 ERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY-----------GLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~~-----------~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
..+++.+|++|+|+|+.+... .....++..+... ++|+|+|+||+|+..... ..++.+.+. +. .
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~-~~-~ 156 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILD-LT-T 156 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHT-HH-H
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhc-ch-h
Confidence 889999999999999988753 3334555555544 899999999999965432 122222221 10 0
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+ .....++++++||++|. |+++++++|.+.+.
T Consensus 157 ~---~~~~~~~~~~~Sa~~g~--------------gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 157 L---MGDHPFVIFASNGLKGT--------------GVHEGFSWLQETAS 188 (199)
T ss_dssp H---HTTSCEEEEECBTTTTB--------------THHHHHHHHHHHHH
T ss_pred h---ccCCeeEEEEeeCCCcc--------------CHHHHHHHHHHHHH
Confidence 0 01124689999999998 99999999988764
No 46
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=2.3e-19 Score=186.99 Aligned_cols=160 Identities=24% Similarity=0.258 Sum_probs=118.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC-C------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA-D------ 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~-d------ 131 (639)
+..+|+|+||+|+|||||+++|++.... ......+.|.......+.+++.+++|+||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-----------i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~ 75 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-----------ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAIN 75 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-----------ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-----------ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHH
Confidence 3468999999999999999999976211 111122334333344567788999999999997 3
Q ss_pred --chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 132 --FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 132 --F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
|...+..+++.+|++++|+|+.+ +..+++.+++.+...+.|.|+|+||+|+.. +... +.+.+.++...+++
T Consensus 76 ~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~---~~~~l~~l~~~~~~-- 148 (301)
T 1ega_A 76 RLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKAD---LLPHLQFLASQMNF-- 148 (301)
T ss_dssp HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHH---HHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHH---HHHHHHHHHHhcCc--
Confidence 33334567788999999999988 889999888888878999999999999964 2322 22333333333332
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.+++++||++|. |++.|++.|.+.+|.
T Consensus 149 ----~~~i~iSA~~g~--------------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 ----LDIVPISAETGL--------------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp ----SEEEECCTTTTT--------------THHHHHHHHHTTCCB
T ss_pred ----CceEEEECCCCC--------------CHHHHHHHHHHhCCc
Confidence 158999999998 999999999998874
No 47
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=1.2e-18 Score=167.99 Aligned_cols=160 Identities=21% Similarity=0.190 Sum_probs=114.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+|+|+.|+|||||+++|+........ ..|+......+.++++.++||||||+.+|...+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 86 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM--------------IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 86 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc--------------CCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHH
Confidence 4579999999999999999999976322111 11222333456778899999999999999988999
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...... .++.+ .+....+. ...
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~----~~~~~~~~--~~~ 158 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE--KELIE----KMNLSAIQ--DRE 158 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH--HHHHH----HTTGGGCC--SSC
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH--HHHHH----HhChhhhc--cCC
Confidence 9999999999999987533 233344444433 58899999999999654221 12221 11111111 134
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||++|. |+++++++|.+.+..
T Consensus 159 ~~~~~~SA~~g~--------------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 159 ICCYSISCKEKD--------------NIDITLQWLIQHSKS 185 (188)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHTCC-
T ss_pred eeEEEEECCCCC--------------CHHHHHHHHHHHHHh
Confidence 689999999999 999999999988754
No 48
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.2e-18 Score=167.59 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=111.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+..... .. .-|+......+.+++..++||||||+.+|...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-----------HT----SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-----------EE----ECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-----------cC----cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 4579999999999999999999965211 11 11222334456678899999999999999888889
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+++... .....++..+.. .+.|+++|+||+|+..... ..++. +.+....+ ....
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~--~~~~ 151 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEIS----QFLKLTSI--KDHQ 151 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHH----HHHTGGGC--CSSC
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC--HHHHH----HHhChhhh--cCCC
Confidence 9999999999999987643 334445555543 4789999999999965321 12222 22211111 1224
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~ 257 (639)
++++++||++|. |+++++++|.+.++.+..
T Consensus 152 ~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 152 WHIQACCALTGE--------------GLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp EEEEECBTTTTB--------------THHHHHHHHHHHHCC---
T ss_pred cEEEEccCCCCc--------------CHHHHHHHHHHHHHHHhh
Confidence 689999999998 999999999998876644
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=8.5e-19 Score=166.11 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=113.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
++..+|+++|+.|+|||||+++|+........ ....+.+.......+......++||||||+.+|...+.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC----------PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC----------TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------CCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHH
Confidence 45789999999999999999999976432111 11123334344444444457899999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+....... .+++.++....+
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------- 151 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT----YEEAKQFAEENG------- 151 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-------
T ss_pred HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC----HHHHHHHHHHcC-------
Confidence 999999999999999876443333 34444443 478899999999985322111 122333333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |+++++++|.+.+
T Consensus 152 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 LLFLEASAKTGE--------------NVEDAFLEAAKKI 176 (179)
T ss_dssp CEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 579999999999 9999999998765
No 50
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.79 E-value=6.7e-19 Score=165.18 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=114.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+....... .....+.+.......+...++.++||||||+.+|......
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 74 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF----------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPM 74 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT----------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHH
Confidence 357899999999999999999997632111 1122344444444444445678999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchh-HHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+........ ++..++.... .+
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~----~~~~~~~~~~-------~~ 143 (170)
T 1r2q_A 75 YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF----QEAQSYADDN-------SL 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH----HHHHHHHHHT-------TC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCH----HHHHHHHHHc-------CC
Confidence 999999999999998764332 33455555443 678889999999854221111 1222333332 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||++|. |+++++++|.+.++.
T Consensus 144 ~~~~~Sa~~g~--------------gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 144 LFMETSAKTSM--------------NVNEIFMAIAKKLPK 169 (170)
T ss_dssp EEEECCTTTCT--------------THHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCC--------------CHHHHHHHHHHHHhh
Confidence 79999999999 999999999988763
No 51
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=7.5e-19 Score=169.96 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=117.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+|+|+.|+|||||+++|+...... ......|.+.......+......++||||||+.+|...+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDH----------NISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCT----------TCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCC----------CcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHH
Confidence 46799999999999999999999763211 11222355555555555556678999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.+|++|+|+|+.+....+. ..++..+.+. ++|+++|+||+|+...+... .+++.++....+ +
T Consensus 92 ~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 160 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP----LKDAKEYAESIG-------A 160 (192)
T ss_dssp HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHTTT-------C
T ss_pred hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC----HHHHHHHHHHcC-------C
Confidence 9999999999999987654333 3455555543 78999999999985322111 122334444333 5
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
|++++||++|. |+++++++|.+.++..
T Consensus 161 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 161 IVVETSAKNAI--------------NIEELFQGISRQIPPL 187 (192)
T ss_dssp EEEECBTTTTB--------------SHHHHHHHHHHTCC--
T ss_pred EEEEEeCCCCc--------------CHHHHHHHHHHHHHhh
Confidence 79999999998 9999999999988754
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.78 E-value=9.5e-19 Score=165.78 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=111.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev 136 (639)
+..+|+++|+.|+|||||+++|+..... ......+++......+.+++ ..+.||||||+.+|...+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 80 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC------------SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC------------CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH
Confidence 3478999999999999999999976322 11122333333334444444 689999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.+|++|+|+|+.+.... ....++..+.. .++|+++|+||+|+...+..... +...+....+
T Consensus 81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~------ 150 (179)
T 2y8e_A 81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE----EGERKAKELN------ 150 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHH----HHHHHHHHHT------
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHH----HHHHHHHHcC------
Confidence 9999999999999999875332 23334444433 47899999999998542211111 1222223222
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||++|. |+++++++|.+.++.
T Consensus 151 -~~~~~~Sa~~~~--------------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 151 -VMFIETSAKAGY--------------NVKQLFRRVAAALPG 177 (179)
T ss_dssp -CEEEEEBTTTTB--------------SHHHHHHHHHHTCC-
T ss_pred -CeEEEEeCCCCC--------------CHHHHHHHHHHHHhh
Confidence 579999999998 999999999988764
No 53
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=3.8e-19 Score=181.01 Aligned_cols=151 Identities=20% Similarity=0.255 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG------ 134 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~------ 134 (639)
++|+++|++|+|||||+++|++. ........|+|+......+.+++..++||||||+.+|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~------------~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~ 69 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA------------NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGIS 69 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT------------SEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------C
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCC
Confidence 68999999999999999999865 223445568998888999999999999999999998864
Q ss_pred ----HHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 135 ----EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 135 ----ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
....++ ..+|++|+|+|++. ......++.++.+.++|+++|+||+|+..... +...+..+...++
T Consensus 70 ~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~-----~~~~~~~l~~~lg-- 140 (256)
T 3iby_A 70 QDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRG-----ISIDTEKLESLLG-- 140 (256)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTT-----CEECHHHHHHHHC--
T ss_pred HHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCC-----cHHHHHHHHHHcC--
Confidence 234455 78999999999987 34556677788888999999999999742111 0011112222233
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
+|++++||++|. |+++|+++|.+.
T Consensus 141 -----~~vi~~SA~~g~--------------gi~el~~~i~~~ 164 (256)
T 3iby_A 141 -----CSVIPIQAHKNI--------------GIPALQQSLLHC 164 (256)
T ss_dssp -----SCEEECBGGGTB--------------SHHHHHHHHHTC
T ss_pred -----CCEEEEECCCCC--------------CHHHHHHHHHhh
Confidence 589999999999 999999999886
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=168.09 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=115.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+|+|+.|+|||||+++|+.... ..+....++.......+.+++ +.++||||||+.+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTY------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCC------------CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCC------------CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh
Confidence 3568999999999999999999997632 222233444455555555555 68999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+...+..... +...+...++
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~----- 152 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT----TAKEFADSLG----- 152 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH----HHHHHHHHTT-----
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH----HHHHHHHHcC-----
Confidence 999999999999999998754322 23444445443 7899999999998654322111 2223333333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|.+.+.
T Consensus 153 --~~~~~~Sa~~g~--------------gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 153 --IPFLETSAKNAT--------------NVEQSFMTMAAEIK 178 (196)
T ss_dssp --CCEEEECTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CcEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999999 99999999887653
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.78 E-value=1.7e-18 Score=166.16 Aligned_cols=160 Identities=17% Similarity=0.136 Sum_probs=111.1
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-----------CceEEEEe
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-----------ENELNMVD 125 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-----------~~~i~iID 125 (639)
.++..+|+|+|+.|+|||||+++|+......... ...+.+... ...+.+. ...++|||
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D 76 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI----------TTVGIDFRE-KRVVYRANGPDGAVGRGQRIHLQLWD 76 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----------CCCSEEEEE-EEEEECTTSCCCSSCCCEEEEEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc----------cccceeeee-EEEEEecCCcccccccCcEEEEEEEe
Confidence 4557899999999999999999999763221111 011222110 1223333 35899999
Q ss_pred CCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 006610 126 TPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (639)
Q Consensus 126 TPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~ 200 (639)
|||+.+|...+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+....... .+++.+
T Consensus 77 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~ 152 (195)
T 3bc1_A 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK----EEEARE 152 (195)
T ss_dssp ECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC----HHHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC----HHHHHH
Confidence 99999999999999999999999999987654443 344454444 578999999999985422111 122223
Q ss_pred HHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+....+ ++++++||++|. |+++++++|.+.+
T Consensus 153 ~~~~~~-------~~~~~~Sa~~~~--------------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 153 LAEKYG-------IPYFETSAANGT--------------NISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHT-------CCEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred HHHHcC-------CCEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 333333 469999999998 9999999998765
No 56
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=4.2e-19 Score=182.47 Aligned_cols=156 Identities=25% Similarity=0.318 Sum_probs=119.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH-----
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG----- 134 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~----- 134 (639)
..+|+++|++|+|||||+++|++. ........|+|+......+.+.+..++||||||+.+|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~------------~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 70 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS------------RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT 70 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT------------CEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----C
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC------------CcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccC
Confidence 368999999999999999999876 223445568999998999999999999999999988762
Q ss_pred ----H-HHHH--HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 135 ----E-VERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 135 ----e-v~~~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
. ...+ .+.+|++|+|+|+.+ ......++.++.+.++|+++|+||+|+..... +...+..+...++
T Consensus 71 ~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~l~~~lg- 142 (274)
T 3i8s_A 71 SLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIEIDALSARLG- 142 (274)
T ss_dssp CHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTT-----EEECHHHHHHHHT-
T ss_pred CHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhh-----HHHHHHHHHHhcC-
Confidence 1 1222 268999999999986 34556677788888999999999999732111 0011122222333
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+|++++||++|. |+++|+++|.+.++..
T Consensus 143 ------~~~i~~SA~~g~--------------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 ------CPVIPLVSTRGR--------------GIEALKLAIDRYKANE 170 (274)
T ss_dssp ------SCEEECCCGGGH--------------HHHHHHHHHHTCCCCC
T ss_pred ------CCEEEEEcCCCC--------------CHHHHHHHHHHHHhcC
Confidence 589999999998 9999999999988754
No 57
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=169.99 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=111.8
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG 134 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ 134 (639)
.++..+|+|+|+.|+|||||+++|+..... .+....++.......+.+++ ..++||||||+.+|..
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 93 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFS------------ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 93 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------CEEEEEEEETTEEEEEEEECCTTCGGGHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCC------------CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHH
Confidence 345689999999999999999999876321 11111222223334445554 6899999999999999
Q ss_pred HHHHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
.+..+++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+...+... .+++.++...++.
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~~--- 166 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS----LAEAQSLAEHYDI--- 166 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTTC---
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC----HHHHHHHHHHcCC---
Confidence 999999999999999999875332 23345555554 468899999999985422111 1223334444332
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+++++||++|. |+++++++|.+.+.
T Consensus 167 ---~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 167 ---LCAIETSAKDSS--------------NVEEAFLRVATELI 192 (201)
T ss_dssp ---SEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 169999999998 99999999988764
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=2.2e-18 Score=166.54 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-------------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE------------------- 118 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~------------------- 118 (639)
+...+|+|+|+.|+|||||+++|+..........++ +. ......+.+++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI----------GA--SFCTYVVNLNDINIKNNSNNEKNNNINSIN 72 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC----------SC--EEEEEEEETTC-------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccc----------cc--eeEEEEEEecCccccccccccccccccccc
Confidence 446799999999999999999999874321111111 11 11111111111
Q ss_pred --------------------ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH-cCCCcEE
Q 006610 119 --------------------NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK-YGLRPIL 176 (639)
Q Consensus 119 --------------------~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~-~~lp~Iv 176 (639)
..++||||||+.+|...+..+++.+|++|+|+|+.++...+. ..++..+.. .+.|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil 152 (208)
T 3clv_A 73 DDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL 152 (208)
T ss_dssp ------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred cccccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 789999999999999999999999999999999988754443 334444443 5789999
Q ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 177 LLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 177 viNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|+||+|... .... .+++.+++...+ ++++++||++|. |+++++++|.+.+
T Consensus 153 v~NK~D~~~-~~~~----~~~~~~~~~~~~-------~~~~~~Sa~~~~--------------~i~~l~~~l~~~~ 202 (208)
T 3clv_A 153 VANKIDKNK-FQVD----ILEVQKYAQDNN-------LLFIQTSAKTGT--------------NIKNIFYMLAEEI 202 (208)
T ss_dssp EEECTTCC--CCSC----HHHHHHHHHHTT-------CEEEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred EEECCCccc-ccCC----HHHHHHHHHHcC-------CcEEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 999999421 1111 123334444332 579999999998 9999999998754
No 59
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=4.8e-18 Score=158.94 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=111.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHh
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~ 141 (639)
+|+++|+.|+|||||+++|+...... . .-|+......+.+++..++||||||+.+|...+..+++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--------~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 66 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--------T-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 66 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--------C-------CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--------c-------cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhc
Confidence 79999999999999999999863211 0 11222334456678899999999999999999999999
Q ss_pred hccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 142 MVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
.+|++++|+|+.+.... ....++..... .+.|+++|+||+|+..... ..++. +.+....+ ....+|+
T Consensus 67 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~----~~~~~~~~--~~~~~~~ 138 (164)
T 1r8s_A 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEIT----DKLGLHSL--RHRNWYI 138 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH----HHTTGGGC--SSCCEEE
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHH----HHhCcccc--cCccEEE
Confidence 99999999999876332 23344444443 2789999999999965322 12222 11111111 1124689
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+++||++|. |+++++++|.+.++
T Consensus 139 ~~~Sa~~~~--------------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 139 QATCATSGD--------------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EECBTTTTB--------------THHHHHHHHHHHC-
T ss_pred EEcccCCCc--------------CHHHHHHHHHHHHh
Confidence 999999998 99999999998875
No 60
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=9.1e-19 Score=167.58 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=111.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+.... ... ..|+......+.+++..++||||||+.+|...+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-----------~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 84 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-----------VHT----SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 84 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-----------EEE----ECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-----------Ccc----CCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 467999999999999999999997621 111 11222233456678899999999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+..... ..++ .+.+..... ....
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i----~~~~~~~~~--~~~~ 156 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEI----SQFLKLTSI--KDHQ 156 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHH----HHHTTGGGC--CSSC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC--HHHH----HHHhCcccc--cCCc
Confidence 9999999999999987643 333445555543 5889999999999965321 1122 222211111 1234
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++++++||++|. |+++++++|.+.
T Consensus 157 ~~~~~~Sa~~g~--------------gi~~l~~~l~~~ 180 (181)
T 2h17_A 157 WHIQACCALTGE--------------GLCQGLEWMMSR 180 (181)
T ss_dssp EEEEECBTTTTB--------------THHHHHHHHHTC
T ss_pred eEEEEccCCCCc--------------CHHHHHHHHHhh
Confidence 689999999998 999999999864
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=9.2e-19 Score=168.61 Aligned_cols=161 Identities=20% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+...+|+|+|+.|+|||||+++|+....... .....|.+.......+......++||||||+.+|...+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 89 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPA----------FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT 89 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----------CCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCC----------cCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH
Confidence 4568999999999999999999997633211 111224444444444444567899999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchh-HHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+....... .+++.++...++
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------- 158 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP----AEDGRRLADDLG------- 158 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-------
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC----HHHHHHHHHHcC-------
Confidence 8999999999999998754332 33455555553 78999999999985422111 122233333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.++
T Consensus 159 ~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 159 FEFFEASAKENI--------------NVKQVFERLVDVIC 184 (189)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987653
No 62
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.78 E-value=9.5e-19 Score=168.95 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=113.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev 136 (639)
.++..+|+|+|+.|+|||||+++|+........ ....|.+.......+......++||||||+.+|...+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 345689999999999999999999986332111 1112444444444444456789999999999999889
Q ss_pred HHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.+|++|+|+|+.+..... ...++..+.. .++|+++|+||+|+....... .++...+....+
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 161 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP----TEEARMFAENNG------ 161 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT------
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC----HHHHHHHHHHcC------
Confidence 99999999999999998754432 2345555544 378899999999985422111 112223333332
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |+++++++|.+.+
T Consensus 162 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 186 (193)
T 2oil_A 162 -LLFLETSALDST--------------NVELAFETVLKEI 186 (193)
T ss_dssp -CEEEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred -CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999988654
No 63
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.78 E-value=1.5e-18 Score=164.72 Aligned_cols=160 Identities=17% Similarity=0.146 Sum_probs=112.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC---ceEEEEeCCCCCCchHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE---NELNMVDTPGHADFGGE 135 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~---~~i~iIDTPGh~dF~~e 135 (639)
+..+|+++|+.|+|||||+++|+..... .+....++.......+.+.+ ..++||||||+.+|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch
Confidence 4578999999999999999999976321 11112222233334455554 78999999999999988
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc-----CCC-cEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY-----GLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~-----~lp-~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
+..+++.+|++|+|+|+++....+. ..++..+... +.| +++|+||+|+....... .++...+....+
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-- 146 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK----PEKHLRFCQENG-- 146 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT--
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC----HHHHHHHHHHcC--
Confidence 9999999999999999987644332 3344444442 667 68899999985422111 112223333333
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+|++++||++|. |+++++++|.+.++..
T Consensus 147 -----~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 147 -----FSSHFVSAKTGD--------------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp -----CEEEEECTTTCT--------------THHHHHHHHHHHHTTC
T ss_pred -----CcEEEEeCCCCC--------------CHHHHHHHHHHHHHhh
Confidence 579999999998 9999999999887643
No 64
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=166.61 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=113.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+..+|+++|+.|+|||||+++|+..... .. ....|+......+.+++..+.||||||+.+|...+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-----------~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 85 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQ-----------SQ--NILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWE 85 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGC-----------CS--SCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-----------CC--CcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 34679999999999999999999866310 00 112233344456677789999999999999998888
Q ss_pred HHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
.+++.+|++|+|+|+.+... .....++..+.. .++|+++|+||+|+..... .++ +.+.+......
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~----~~~~~~~~~~~-- 157 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT--SVK----VSQLLCLENIK-- 157 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC--HHH----HHHHHTGGGCC--
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC--HHH----HHHHhChhhcc--
Confidence 89999999999999987532 223344444443 4789999999999965321 122 22222111111
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
...++++++||++|. |+++++++|.+.+.
T Consensus 158 ~~~~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 158 DKPWHICASDAIKGE--------------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp SSCEEEEECBTTTTB--------------THHHHHHHHHHHC-
T ss_pred CCceEEEEccCCCCc--------------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999988764
No 65
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.77 E-value=2.2e-18 Score=161.81 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=114.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+....... .....|.+.......+......+.||||||+.+|......
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 74 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN----------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPM 74 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC----------CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHh
Confidence 357999999999999999999997632111 1122344444444444444578999999999999988899
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+...+... .++...+.... .+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~----~~~~~~~~~~~-------~~ 143 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM----ERDAKDYADSI-------HA 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC----HHHHHHHHHHT-------TC
T ss_pred hCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccC----HHHHHHHHHHc-------CC
Confidence 9999999999999987654333 3455555544 56788999999985422111 11222233332 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||++|. |+++++++|.+.++.
T Consensus 144 ~~~~~Sa~~~~--------------~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 144 IFVETSAKNAI--------------NINELFIEISRRIPS 169 (170)
T ss_dssp EEEECBTTTTB--------------SHHHHHHHHHHHCCC
T ss_pred EEEEEeCCCCc--------------CHHHHHHHHHHHHhc
Confidence 79999999999 999999999998763
No 66
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.77 E-value=6.3e-19 Score=167.33 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=114.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+++|+.|+|||||+++|+.... ..+....++.......+.+++ +.++||||||+.+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF------------SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC------------CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh
Confidence 4578999999999999999999986521 122334555555556666666 78999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
+..+++.+|++|+|+|+.++...+.. .++..+... ++|+++|+||+|+...+.... .+...+....+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~------ 144 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET----EDAYKFAGQMG------ 144 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH----HHHHHHHHHHT------
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH----HHHHHHHHHcC------
Confidence 88889999999999999886443332 344444433 588999999999854322111 11222333333
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|.+.+.
T Consensus 145 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 145 -IQLFETSAKENV--------------NVEEMFNCITELVL 170 (181)
T ss_dssp -CCEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999999 99999999987653
No 67
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=1.7e-18 Score=163.44 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=107.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------ 133 (639)
..+|+++|++|+|||||+++|++... ..+...++|+......+.+++..+++|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 70 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE 70 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS------------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe------------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhH
Confidence 36899999999999999999986421 112234666666666677888999999999999874
Q ss_pred HHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 134 GEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 134 ~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
.....+++ .+|++++|+|+... .....++..+.+.++|+++|+||+|+..... +..+...+...++
T Consensus 71 ~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~----- 138 (165)
T 2wji_A 71 IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IEIDVDKLEKILG----- 138 (165)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT-----
T ss_pred HHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccccC-----hhhHHHHHHHHhC-----
Confidence 22344554 78999999999762 3344566677778999999999999732110 0001122222233
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |+++++++|.+.+
T Consensus 139 --~~~~~~SA~~~~--------------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 --VKVVPLSAAKKM--------------GIEELKKAISIAV 163 (165)
T ss_dssp --SCEEECBGGGTB--------------SHHHHHHHHHHHT
T ss_pred --CCEEEEEcCCCC--------------CHHHHHHHHHHHh
Confidence 469999999999 9999999998765
No 68
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.8e-18 Score=163.08 Aligned_cols=160 Identities=20% Similarity=0.176 Sum_probs=104.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~e 135 (639)
++..+|+++|+.|+|||||+++|+..... .......++.......+..+ ...++||||||+.+|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 76 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFL-----------AGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------CCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-----------CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 34679999999999999999999976321 11111222223222333334 358999999999999988
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+......... +...+....+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~----- 147 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRE----DGEKLAKEYG----- 147 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHH----HHHHHHHHHT-----
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHH----HHHHHHHHcC-----
Confidence 8899999999999999987644333 344445444 57899999999999653221111 2222333333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.+.
T Consensus 148 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 148 --LPFMETSAKTGL--------------NVDLAFTAIAKELK 173 (180)
T ss_dssp --CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999988764
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=167.35 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=108.7
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
..++..+|+|+|+.|+|||||+++|+....... .....|.+.......+......++||||||+.+|...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 93 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFREN----------ISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------CEEEEEEETTEEEEEEEEECTTCTTCHHH
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCcc----------CCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 345678999999999999999999997632111 1111233333333444444578999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHH-HHHHH-HHHHHHHHHhcCCCC
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEE-RCDEV-ESLVFDLFANLGATD 209 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~-~~~~v-~~~i~~l~~~~g~~~ 209 (639)
+..+++.+|++|+|+|+.++...+. ..++..+.. .++|+++|+||+|+...... ....+ .++...+....+
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~--- 170 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG--- 170 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT---
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC---
Confidence 9999999999999999987654443 334444443 37899999999998421000 00000 112222333332
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|++.+.
T Consensus 171 ----~~~~~~SA~~g~--------------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 171 ----ALFCETSAKDGS--------------NIVEAVLHLAREVK 196 (199)
T ss_dssp ----CEEEECCTTTCT--------------THHHHHHHHHHHHT
T ss_pred ----CeEEEeeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999999 99999999988764
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=168.18 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=109.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+++|+.|+|||||+++|+..... .+....++.......+.+++ +.++||||||+.+|...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 91 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC------------EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC------------cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH
Confidence 34679999999999999999999865221 11122233333334444444 68999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+...+... .+++..+...+.
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~----- 162 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT----RQQGEKFAQQIT----- 162 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHTST-----
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC----HHHHHHHHHhcC-----
Confidence 99999999999999999886554443 33344443 378999999999985422111 112223333221
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |+++++++|.+.+
T Consensus 163 -~~~~~~~SA~~g~--------------gi~~l~~~l~~~i 188 (192)
T 2il1_A 163 -GMRFCEASAKDNF--------------NVDEIFLKLVDDI 188 (192)
T ss_dssp -TCEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999998 9999999998754
No 71
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.8e-18 Score=167.17 Aligned_cols=166 Identities=14% Similarity=0.079 Sum_probs=114.0
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCch
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG 133 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~ 133 (639)
......+|+++|+.|+|||||+++|+..........++ +... ...+.+++ +.++||||||+.+|.
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~----------~~~~---~~~~~~~~~~~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV----------FDHY---AVSVTVGGKQYLLGLYDTAGQEDYD 80 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS----------CCCE---EEEEESSSCEEEEEEECCCCSSSST
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------ccee---EEEEEECCEEEEEEEEECCCCcchh
Confidence 33456899999999999999999999864322211111 1111 12233333 689999999999998
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHH---------HHHHHHH
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDE---------VESLVFD 200 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~---------v~~~i~~ 200 (639)
.....+++.+|++|+|+|+++....+.. .++..+.+. ++|+++|+||+|+..... .... ..++...
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK-TLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH-HHHHHTTTTCCCCCHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc-chhhcccccCcccCHHHHHH
Confidence 8888889999999999999876433332 455666655 899999999999965321 0000 0122333
Q ss_pred HHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+...++. .+++++||++|. |+++++++|.+.+..|
T Consensus 160 ~~~~~~~------~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 160 LAKEIGA------CCYVECSALTQK--------------GLKTVFDEAIIAILTP 194 (194)
T ss_dssp HHHHHTC------SCEEECCTTTCT--------------THHHHHHHHHHHHHCC
T ss_pred HHHHcCC------cEEEEeeCCCCC--------------CHHHHHHHHHHHHhcC
Confidence 3333332 269999999999 9999999998876443
No 72
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=8.9e-19 Score=167.33 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=88.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+++|+.|+|||||+++|+.... ..+....++.......+.+++ ..++||||||+.+|...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 73 (183)
T ss_dssp SEEEEEEEECCCCC----------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh
Confidence 3468999999999999999999986521 112223344444444555555 78999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+.... ....++..+... ++|+++|+||+|+....... .+++..+....+
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~----- 144 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS----KERGEKLALDYG----- 144 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC----HHHHHHHHHHHT-----
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC----HHHHHHHHHHcC-----
Confidence 88889999999999999875432 233455555543 78999999999986532211 112223333333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.+.
T Consensus 145 --~~~~~~Sa~~~~--------------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 145 --IKFMETSAKANI--------------NVENAFFTLARDIK 170 (183)
T ss_dssp --CEEEECCC---C--------------CHHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999998 99999999987653
No 73
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.77 E-value=2.4e-18 Score=161.91 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=113.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+...... ...|+......+.+++.+++||||||+.+|...+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 70 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT---------------TIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC 70 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC---------------CCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC---------------cCCcCccceEEEEECCEEEEEEECCCChhhhHHHHH
Confidence 35799999999999999999998753210 111223344566778899999999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+.+... .....++..... .+.|+++|+||+|+..... ..++.+ .+....+. ...
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~----~~~~~~~~--~~~ 142 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMAN----SLGLPALK--DRK 142 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH----HHTGGGCT--TSC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHH----HhCchhcc--CCc
Confidence 9999999999999987643 223344444433 4889999999999965432 122222 11111111 124
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.++
T Consensus 143 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 143 WQIFKTSATKGT--------------GLDEAMEWLVETLK 168 (171)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred eEEEECcCCCCc--------------CHHHHHHHHHHHHh
Confidence 689999999999 99999999988764
No 74
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.77 E-value=3.6e-18 Score=166.20 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=112.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+|+|+.|+|||||+++|+....... .....|++.......+......++||||||+.+|...+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 76 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA----------FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTA 76 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC----------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC----------cCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHH
Confidence 468999999999999999999987632111 1112244444444444444578999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.+|++|+|+|+.++.... ...++..+.. .+.|+++|+||+|+........ +++..+...++ +
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-------~ 145 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS----ERGRQLADHLG-------F 145 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH----HHHHHHHHHHT-------C
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH----HHHHHHHHHCC-------C
Confidence 999999999999998764333 2344455544 3789999999999865322111 12223333333 4
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++++||++|. |+++++++|.+.+
T Consensus 146 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 146 EFFEASAKDNI--------------NVKQTFERLVDVI 169 (203)
T ss_dssp EEEECBTTTTB--------------SSHHHHHHHHHHH
T ss_pred eEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999998887655
No 75
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.77 E-value=5e-18 Score=160.88 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=109.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev 136 (639)
...+|+++|++|+|||||+++|+..... .+..+.++.......+.+++ ..+.||||||+.+|...+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD------------TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC------------C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC------------CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH
Confidence 4679999999999999999999976321 11122222333333444444 589999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH-------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
..+++.+|++++|+|+.+....+.. .++..+.. .++|+++|+||+|+..... . .+++.++....
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~----~~~~~~~~~~~--- 145 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV-S----TEEAQAWCRDN--- 145 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS-C----HHHHHHHHHHT---
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccccc-C----HHHHHHHHHhc---
Confidence 9999999999999999876543332 33333332 5789999999999863211 1 12222333211
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
..++++++||++|. |+++++++|++.+.
T Consensus 146 ---~~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 146 ---GDYPYFETSAKDAT--------------NVAAAFEEAVRRVL 173 (177)
T ss_dssp ---TCCCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred ---CCceEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 13579999999999 99999999988764
No 76
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=1.6e-18 Score=165.76 Aligned_cols=159 Identities=21% Similarity=0.154 Sum_probs=112.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
++..+|+++|+.|+|||||+++|+...... .....++.......+.+++ ..++||||||+.+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD------------DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT------------TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC------------CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 346899999999999999999999763221 1122333333334444444 68999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHH---HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKAL---KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~---~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+.. .++..+. ..++|+++|+||+|+...+..... +...+....
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~------ 145 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFL----EASRFAQEN------ 145 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHH----HHHHHHHHT------
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHH----HHHHHHHHc------
Confidence 99999999999999999875443333 3333333 347899999999998532211111 222333332
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++++++||++|. |+++++++|.+.+.
T Consensus 146 -~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 146 -ELMFLETSALTGE--------------NVEEAFVQCARKIL 172 (186)
T ss_dssp -TCEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred -CCEEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999998 99999999987653
No 77
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=6e-19 Score=170.36 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=116.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+...+|+|+|+.|+|||||+++|+....... .....+++.......+......++||||||+.+|.....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPA----------FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCC----------EEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcc----------cCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence 3468999999999999999999998743211 111224455555555556678999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|+.+.... ....++..+.. .++|+++|+||+|+...+.... ++...+...++
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~------- 159 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT----EKGQLLAEQLG------- 159 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH----HHHHHHHHHHT-------
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH----HHHHHHHHHcC-------
Confidence 999999999999999875332 23445555555 4789999999999854322111 12222333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |++++++.|++.+
T Consensus 160 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENI--------------SVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999988765
No 78
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=5.7e-18 Score=159.12 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=109.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+..........+ .+.+.. ....+....+.++||||||+.+|......+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t----------~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPT----------VEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCC----------SCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----------ccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHh
Confidence 468999999999999999999975322111111 111111 122233334679999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCc-hhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~-~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
++.+|++++|+|+.+... .....++..+.+ .++|+++|+||+|+...+..... +...+....+
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~----~~~~~~~~~~------- 140 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS----EAEALARTWK------- 140 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH----HHHHHHHHHT-------
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH----HHHHHHHHhC-------
Confidence 999999999999986532 233445555544 37899999999998542221111 1122222222
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+|++++||++|. |+++++++|.+.+..+
T Consensus 141 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 141 CAFMETSAKLNH--------------NVKELFQELLNLEKRR 168 (172)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHTCCSS
T ss_pred CeEEEecCCCCc--------------CHHHHHHHHHHHHhhh
Confidence 579999999998 9999999999987654
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=5.3e-18 Score=159.01 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=111.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+........ ....+.+.......+......+.||||||+.+|...+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 72 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK----------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXY 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhh
Confidence 368999999999999999999976322111 1112333333333333345689999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+......+ ....++...+....+ ++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~-------~~ 144 (170)
T 1ek0_A 73 YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGER-KVAREEGEKLAEEKG-------LL 144 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCC-CSCHHHHHHHHHHHT-------CE
T ss_pred hccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccc-CCCHHHHHHHHHHcC-------CE
Confidence 999999999999987643333 334444443 378899999999985431100 000111222333333 47
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++||++|. |+++++++|.+.++
T Consensus 145 ~~~~Sa~~~~--------------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 145 FFETSAKTGE--------------NVNDVFLGIGEKIP 168 (170)
T ss_dssp EEECCTTTCT--------------THHHHHHHHHTTSC
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHHh
Confidence 9999999998 99999999998875
No 80
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.76 E-value=4.4e-18 Score=162.49 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=107.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+..........+ .+... .....+....+.++||||||+.+|......
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t----------~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 85 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPT----------IEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQ 85 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTT----------CCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----------cccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHH
Confidence 4679999999999999999999976332111111 11111 222222223456788999999999988999
Q ss_pred HHhhccEEEEEEeCCCCCchh-HHHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q-t~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+.+....+ ...++..+. ..++|+++|+||+|+...+.... +++..+...++
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~------- 154 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR----DQGKEMATKYN------- 154 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH----HHHHHHHHHHT-------
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCH----HHHHHHHHHhC-------
Confidence 999999999999998763322 223333332 35789999999999865322111 12233333333
Q ss_pred ccEEecccc-cCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAK-EGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~-~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+|++++||+ +|. |++++++.|.+.+
T Consensus 155 ~~~~~~Sa~~~~~--------------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 155 IPYIETSAKDPPL--------------NVDKTFHDLVRVI 180 (183)
T ss_dssp CCEEEEBCSSSCB--------------SHHHHHHHHHHHH
T ss_pred CeEEEeccCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999 998 9999999998754
No 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.76 E-value=2e-18 Score=162.11 Aligned_cols=156 Identities=20% Similarity=0.187 Sum_probs=108.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev~ 137 (639)
..+|+++|+.|+|||||+++|+..... ......++.......+.+++ ..+.||||||+.+|...+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN------------PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC------------C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHH
Confidence 578999999999999999999976321 11122233333333444443 5799999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|+.+...... ..++..+... +.|+++|+||+|+..... . .++..++....+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~~------- 138 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-T----ADQGEALAKELG------- 138 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS-C----HHHHHHHHHHHT-------
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc-C----HHHHHHHHHHcC-------
Confidence 99999999999999987543322 3455555443 789999999999843221 1 112223333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|.+.+.
T Consensus 139 ~~~~~~Sa~~~~--------------gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 139 IPFIESSAKNDD--------------NVNEIFFTLAKLIQ 164 (170)
T ss_dssp CCEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987764
No 82
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.76 E-value=2.2e-18 Score=166.39 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=109.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
....+|+|+|+.|+|||||+++|+........ ....+.+.......+......++||||||+.+|...+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHH
Confidence 44689999999999999999999976322110 01113233333233322346899999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+....... .++...+....+
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~------- 157 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK----REEGEAFAREHG------- 157 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-------
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccC----HHHHHHHHHHcC-------
Confidence 99999999999999987543333 3455555543 78999999999985322111 112223333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |+++++++|++.+
T Consensus 158 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 182 (191)
T 2a5j_A 158 LIFMETSAKTAC--------------NVEEAFINTAKEI 182 (191)
T ss_dssp CEEEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999998765
No 83
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=1.7e-18 Score=177.61 Aligned_cols=154 Identities=24% Similarity=0.313 Sum_probs=118.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH-----
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG----- 134 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~----- 134 (639)
.++|+++|++|+|||||+++|++. .......+|+|+......+.+++..++||||||+.+|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 70 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL------------RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE 70 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT------------CEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC------------CcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH
Confidence 579999999999999999999865 223445678899988899999999999999999998865
Q ss_pred -HHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcC-CCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 135 -EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYG-LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 135 -ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~-lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
.+..++ ..+|++|+|+|++.+ .....++..+.+.+ +|+++|+||+|+... ..+......+...++
T Consensus 71 ~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----~~~~~~~~~l~~~lg---- 139 (271)
T 3k53_A 71 LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKK-----KGAKIDIKKMRKELG---- 139 (271)
T ss_dssp HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHH-----HTCCCCHHHHHHHHS----
T ss_pred HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcc-----cccHHHHHHHHHHcC----
Confidence 334444 569999999999874 46667788888888 999999999996320 000001222222333
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |++++++.|.+.+.
T Consensus 140 ---~~~~~~Sa~~g~--------------gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 140 ---VPVIPTNAKKGE--------------GVEELKRMIALMAE 165 (271)
T ss_dssp ---SCEEECBGGGTB--------------THHHHHHHHHHHHH
T ss_pred ---CcEEEEEeCCCC--------------CHHHHHHHHHHHHh
Confidence 579999999998 99999999987754
No 84
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.76 E-value=5e-18 Score=158.64 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=104.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+..........+ .+.+. .....+....+.++||||||+.+|......+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 72 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----------KADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTT----------CCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCC----------cceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHH
Confidence 478999999999999999999976322111111 11111 1112222234689999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++++|+|+.+..... ...++..+.. .++|+++|+||+|+....... .+++..+....+ +
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~ 141 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS----VEEAKNRADQWN-------V 141 (168)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-------C
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC----HHHHHHHHHHcC-------C
Confidence 99999999999998654322 2233344433 378999999999985432211 122223333333 4
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++++||++|. |+++++++|.+.+
T Consensus 142 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 142 NYVETSAKTRA--------------NVDKVFFDLMREI 165 (168)
T ss_dssp EEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred eEEEeCCCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999999998764
No 85
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=1.4e-18 Score=177.10 Aligned_cols=155 Identities=23% Similarity=0.374 Sum_probs=117.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---- 134 (639)
+..+|+++|++|+|||||+++|++. ........|+|+......+.+++..++||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~------------~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 71 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT------------KQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID 71 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT------------CEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC------------CCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH
Confidence 3578999999999999999999865 122344568999988889999899999999999988753
Q ss_pred --HHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 135 --EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 135 --ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
....++ ..+|++++|+|++.. .....++.++.+.++|+++|+||+|+..... +..+...+...++
T Consensus 72 e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~-----i~~~~~~l~~~lg---- 140 (258)
T 3a1s_A 72 EKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTG-----MKIDRYELQKHLG---- 140 (258)
T ss_dssp HHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCBCHHHHHHHHC----
T ss_pred HHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccc-----hHHHHHHHHHHcC----
Confidence 223444 479999999999873 3345677788888999999999999732111 1111222333333
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++|+++|.+.+.
T Consensus 141 ---~~vi~~SA~~g~--------------gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 ---IPVVFTSSVTGE--------------GLEELKEKIVEYAQ 166 (258)
T ss_dssp ---SCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred ---CCEEEEEeeCCc--------------CHHHHHHHHHHHhh
Confidence 589999999999 99999999998764
No 86
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=2.1e-18 Score=166.06 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=106.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCch-H
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFG-G 134 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~-~ 134 (639)
.+..+|+++|+.|+|||||+++|+....... ....++.......+.++ ..+++||||||+.+|. .
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 85 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR------------TEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 85 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS------------CCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC------------CCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhh
Confidence 3568999999999999999999997632211 11122222223333344 3689999999999987 6
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
.+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+...+... .++...+....+
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~--- 158 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP----TDLAQKFADTHS--- 158 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT---
T ss_pred hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC----HHHHHHHHHHcC---
Confidence 78888999999999999987543322 334444433 478999999999985432111 112223333333
Q ss_pred ccccccEEecccccC---CCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 210 EQLDFPVLYASAKEG---WASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g---~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++| . |++++++.|++.++
T Consensus 159 ----~~~~~~Sa~~~~~~~--------------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 159 ----MPLFETSAKNPNDND--------------HVEAIFMTLAHKLK 187 (189)
T ss_dssp ----CCEEECCSSSGGGGS--------------CHHHHHHHHC----
T ss_pred ----CEEEEEeCCcCCccc--------------CHHHHHHHHHHHHh
Confidence 47999999999 6 99999999988765
No 87
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=160.99 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=102.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC--chHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--FGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d--F~~ev 136 (639)
...+|+++|++|+|||||+++|+..... ......|.+.......+......++||||||+.+ +....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 71 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQER-----------DLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQ 71 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC----------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCc-----------cccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhH
Confidence 3578999999999999999999865221 1112234554444333333345889999999988 55556
Q ss_pred HHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...++.+|++++|+|+++....+ ...++..+... ++|+++|+||+|+...+....+ +...+....+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~~~~~~~~~----- 142 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE----EGRACAVVFD----- 142 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHH----HHHHHHHHHT-----
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHH----HHHHHHHHcC-----
Confidence 67778899999999998654322 33455555554 7899999999999653321111 1222222222
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+|++++||++|. |+++++++|.+.+
T Consensus 143 --~~~~~~Sa~~g~--------------gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 --CKFIETSATLQH--------------NVAELFEGVVRQL 167 (175)
T ss_dssp --SEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred --CeEEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 579999999999 9999999998765
No 88
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=1.3e-17 Score=163.68 Aligned_cols=168 Identities=23% Similarity=0.247 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---CceEEEEeCCCCCCchH-
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGG- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~---~~~i~iIDTPGh~dF~~- 134 (639)
+..+|+++|+.|+|||||+++|+....... ..|+......+.++ ++.++|||||||.+|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT---------------QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB---------------CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc---------------cCCcceeeEEEEecCCCccEEEEEECCCChhHHHH
Confidence 457999999999999999999998632211 11122222335555 67899999999999987
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchhHH---HHHHHHH------HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH--
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQTK---FVLAKAL------KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA-- 203 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~qt~---~~l~~~~------~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~-- 203 (639)
.+..+++.+|++|+|+|+++ ...+.. .+|.... ..++|+++|+||+|+..... ..++.+.+.+.+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 147 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTL 147 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHH
Confidence 67788999999999999986 222222 3333221 23689999999999975432 1223333333222
Q ss_pred -----------------h--cC-----CCCccc--cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 204 -----------------N--LG-----ATDEQL--DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 204 -----------------~--~g-----~~~~~~--~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+ ++ +....+ .++++++||++|. ......|+++++++|.+.+
T Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~--------~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 148 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGR--------GDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC---------------CCBCHHHHHHHHHHC
T ss_pred hccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCC--------ccccccChHHHHHHHHHhC
Confidence 0 11 000112 5789999999991 0001119999999998653
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=3.2e-18 Score=159.81 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=106.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|++|+|||||+++|+..........+. + +.......+......++||||||+.+|......+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 71 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI----------E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC----------C-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc----------c-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 3689999999999999999999764321111111 1 1112222222234569999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++++|+|+.+....+ ...++..+.+ .+.|+++|+||+|+...+... .++...+....+ +
T Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~ 140 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS----SSEGRALAEEWG-------C 140 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-------S
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCC----HHHHHHHHHHhC-------C
Confidence 99999999999998753322 2333433333 478999999999985322111 112223333333 4
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|++++||++|. |+++++++|.+.+
T Consensus 141 ~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 141 PFMETSAKSKT--------------MVDELFAEIVRQM 164 (167)
T ss_dssp CEEEECTTCHH--------------HHHHHHHHHHHHH
T ss_pred CEEEecCCCCc--------------CHHHHHHHHHHHH
Confidence 79999999998 9999999998754
No 90
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=6.4e-18 Score=185.22 Aligned_cols=155 Identities=23% Similarity=0.337 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC---------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--------- 131 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d--------- 131 (639)
++|+|+|.+|+|||||+++|++... ...+...|+|.+.....+.|++..++||||||+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-----------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~ 70 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-----------AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQK 70 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----------ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHH
Confidence 5799999999999999999997521 11334568998888899999999999999999765
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHH-HHHHHhcCCCCc
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLV-FDLFANLGATDE 210 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i-~~l~~~~g~~~~ 210 (639)
+...+..+++.||++|+|+|+.++.......+.+.+++.++|+++|+||+|... . ...++ .++ ..+++.
T Consensus 71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~----~---~~~~~~~~~-~~lg~~-- 140 (439)
T 1mky_A 71 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR----E---FEREVKPEL-YSLGFG-- 140 (439)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH----H---HHHHTHHHH-GGGSSC--
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc----c---cHHHHHHHH-HhcCCC--
Confidence 345677889999999999999999888888888878888999999999999731 1 01122 232 244432
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||++|. |+.+|+++|.+.+|.
T Consensus 141 ----~~~~iSA~~g~--------------gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 ----EPIPVSAEHNI--------------NLDTMLETIIKKLEE 166 (439)
T ss_dssp ----SCEECBTTTTB--------------SHHHHHHHHHHHHHH
T ss_pred ----CEEEEeccCCC--------------CHHHHHHHHHHhccc
Confidence 47899999999 999999999988863
No 91
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.5e-18 Score=167.27 Aligned_cols=159 Identities=18% Similarity=0.143 Sum_probs=111.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
++..+|+++|+.|+|||||+++|+...... .....++++.....+.+++ +.++||||||+.+|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 91 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP------------GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 91 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCC------------CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 457899999999999999999999763211 1112233333333444544 58999999999999998
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
...+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+....... .++...+....+
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~----- 162 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS----QQRAEEFSEAQD----- 162 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC----HHHHHHHHHHcC-----
Confidence 9999999999999999987543332 344444443 368899999999985322111 111222222222
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.+.
T Consensus 163 --~~~~~~Sa~~g~--------------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 163 --MYYLETSAKESD--------------NVEKLFLDLACRLI 188 (201)
T ss_dssp --CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999999 99999999987664
No 92
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=3.4e-18 Score=167.40 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=111.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
....+|+|+|++++|||||+++|+..... .+....++.......+.+++ ..+.||||||+.+|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN------------PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC------------CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC------------cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 34689999999999999999999975321 11222333334444555555 68999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+..... . .++...+...++
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~~----- 155 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-T----ADQGEALAKELG----- 155 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCS-C----HHHHHHHHHHHT-----
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-C----HHHHHHHHHHcC-----
Confidence 8899999999999999987543322 3455555443 789999999999843211 1 112223333333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|.+.++
T Consensus 156 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 156 --IPFIESSAKNDD--------------NVNEIFFTLAKLIQ 181 (213)
T ss_dssp --CCEEECBTTTTB--------------SSHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987664
No 93
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=1.4e-18 Score=171.08 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec------------CceEEEEe
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------ENELNMVD 125 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~------------~~~i~iID 125 (639)
++..+|+|+|+.++|||||+++|+..... .+....+++......+.+. ...++|||
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D 90 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWD 90 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC------------cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEE
Confidence 45689999999999999999999865221 1111122222222233333 56899999
Q ss_pred CCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHH-HHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHH
Q 006610 126 TPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF-VLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (639)
Q Consensus 126 TPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~ 200 (639)
|||+.+|...+..+++.+|++|+|+|+.+....+... ++..+.. .++|+++|+||+|+....... .+++.+
T Consensus 91 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~ 166 (217)
T 2f7s_A 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN----ERQARE 166 (217)
T ss_dssp EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC----HHHHHH
T ss_pred CCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC----HHHHHH
Confidence 9999999999999999999999999998754433332 3333322 468899999999985422111 122233
Q ss_pred HHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+....+ ++++++||++|. |+++++++|.+.+
T Consensus 167 ~~~~~~-------~~~~~~Sa~~g~--------------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 167 LADKYG-------IPYFETSAATGQ--------------NVEKAVETLLDLI 197 (217)
T ss_dssp HHHHTT-------CCEEEEBTTTTB--------------THHHHHHHHHHHH
T ss_pred HHHHCC-------CcEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 333333 579999999998 9999999998765
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=6.7e-18 Score=163.88 Aligned_cols=166 Identities=15% Similarity=0.199 Sum_probs=109.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe---ecCceEEEEeCCCCCCch
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS---WRENELNMVDTPGHADFG 133 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~---~~~~~i~iIDTPGh~dF~ 133 (639)
.++..+|+++|..|+|||||+++|++... .....+.+.......+. .....++||||||+.+|.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS-------------PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF 83 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC-------------GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC-------------CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH
Confidence 34568999999999999999998765311 01122333333333333 345799999999999997
Q ss_pred HHH---HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCH--HHHHHHHHHHHHHHH
Q 006610 134 GEV---ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSE--ERCDEVESLVFDLFA 203 (639)
Q Consensus 134 ~ev---~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~--~~~~~v~~~i~~l~~ 203 (639)
... ..+++.+|++|+|+|+++........+...+.+ .++|+++|+||+|+...+. ....++..+..+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~ 163 (196)
T 3llu_A 84 DPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLA 163 (196)
T ss_dssp CTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHH
Confidence 776 789999999999999998743333444333333 3889999999999854211 111222222222233
Q ss_pred hcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.... ....++++++||++ . |++++|+.|++.+
T Consensus 164 ~~~~--~~~~~~~~e~Sa~~-~--------------~v~~~f~~l~~~l 195 (196)
T 3llu_A 164 DAGL--EKLHLSFYLTSIYD-H--------------SIFEAFSKVVQKL 195 (196)
T ss_dssp HTTC--TTSCEEEEEECTTS-T--------------HHHHHHHHHHHHT
T ss_pred Hhhh--hcCCcceEEEEech-h--------------hHHHHHHHHHHHh
Confidence 2221 12346899999999 8 9999999998764
No 95
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.76 E-value=6.7e-18 Score=161.08 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=108.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev 136 (639)
+..+|+++|+.|+|||||+++|+..........+. +.+ ....+.+. .+.+.||||||+.+|...+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK----------ADS---YRKKVVLDGEEVQIDILDTAGQEDYAAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTC----------CEE---EEEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcc----------ceE---EEEEEEECCEEEEEEEEECCCCcccHHHH
Confidence 46899999999999999999999763221111110 111 11223333 3589999999999999999
Q ss_pred HHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
..+++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+....... .+++.+++...+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----- 154 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN----- 154 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC----HHHHHHHHHHcC-----
Confidence 999999999999999986533222 233333333 378999999999985432211 122333333333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |+++++++|.+.+
T Consensus 155 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 179 (187)
T 2a9k_A 155 --VNYVETSAKTRA--------------NVDKVFFDLMREI 179 (187)
T ss_dssp --CEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred --CeEEEeCCCCCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998765
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=1e-17 Score=162.24 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=108.9
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev 136 (639)
..+..+|+++|+.|+|||||+++|+.... ... ..|+......+.+++..++||||||+.+|...+
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~-----------~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 90 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEI-----------VTT----IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLW 90 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCC-----------EEE----EEETTEEEEEEEETTEEEEEEECC-----CTTH
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCc-----------ccc----CCcCceeEEEEEECCEEEEEEECCCCHhHHHHH
Confidence 34567999999999999999999975411 111 113333445567788999999999999998888
Q ss_pred HHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
..+++.+|++|+|+|+.+....+ ...++..+.. .+.|+++|+||+|+..... ..++. +.+..... ..
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~--~~ 162 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELT----DKLGLQHL--RS 162 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH----HHTTGGGC--SS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHH----HHhCcccc--cC
Confidence 89999999999999998764322 3344444433 3789999999999965422 12222 11111111 12
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
..++++++||++|. |+++++++|.+.+.
T Consensus 163 ~~~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 163 RTWYVQATCATQGT--------------GLYDGLDWLSHELS 190 (192)
T ss_dssp CCEEEEECBTTTTB--------------THHHHHHHHHHHTT
T ss_pred CceEEEECcCCCcC--------------CHHHHHHHHHHHHh
Confidence 24689999999998 99999999998764
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=2.2e-17 Score=158.22 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=112.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+..+|+++|+.|+|||||+++|+... ........|. ....+.+++..+++|||||+.+|...+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~-----------~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 78 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASED-----------ISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIRPYWR 78 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSC-----------CEEEEEETTE----EEEEEEETTEEEEEEECSSCGGGHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC-----------CCcccCcCCe----EEEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 346799999999999999999997541 1111122232 2345667789999999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+++.+|++++|+|+++..... ...++..+.. .+.|+++|+||+|+...... .++. +.+....+ ...
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~----~~~~~~~~--~~~ 150 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIA----EGLNLHTI--RDR 150 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHH----HHTTGGGC--CSS
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHHH----HHhCchhc--cCC
Confidence 9999999999999998754332 3344444322 47899999999999754321 1221 21111111 112
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.++++++||++|. |+++++++|.+.+..
T Consensus 151 ~~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 151 VWQIQSCSALTGE--------------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp CEEEEECCTTTCT--------------THHHHHHHHHHTC--
T ss_pred ceEEEEccCCCCC--------------CHHHHHHHHHHHHHh
Confidence 4689999999999 999999999988753
No 98
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=162.76 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=109.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
.+..+|+|+|+.|+|||||+++|+..........+ .+.+. ...+.+++ +.+.||||||+.+|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t----------~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 78 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT----------KADSY---RKKVVLDGEEVQIDILDTAGQEDYAAI 78 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTT----------CCEEE---EEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------cceEE---EEEEEECCEEEEEEEEcCCChhhhHHH
Confidence 34689999999999999999999976422111111 11111 12233333 58999999999999999
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
+..+++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+....... .+++..+....+
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~---- 150 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN---- 150 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT----
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc----HHHHHHHHHHhC----
Confidence 9999999999999999987543222 234444433 378999999999985432211 122233333333
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|++.+.
T Consensus 151 ---~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 151 ---VNYVETSAKTRA--------------NVDKVFFDLMREIR 176 (206)
T ss_dssp ---CEEEEECTTTCT--------------THHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987763
No 99
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.75 E-value=7.2e-18 Score=161.35 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=104.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev~ 137 (639)
..+|+++|+.|+|||||+++|+.......... .+.......+.++ .+.++||||||+.+|.....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-------------t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDP-------------TIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCT-------------TCCEEEEEEEEETTEEEEEEEEECCCC---CTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-------------CchheEEEEEEECCcEEEEEEEECCCcHHHHHHHH
Confidence 46899999999999999999997643221111 1111112222333 35688899999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+...... .+.+..+...++
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~-----~~~~~~~~~~~~------ 139 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVD-----TKQAQDLARSYG------ 139 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSC-----HHHHHHHHHHHT------
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccC-----HHHHHHHHHHcC------
Confidence 99999999999999987543222 234444433 37899999999998643211 112223333333
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|.+.+.
T Consensus 140 -~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 140 -IPFIETSAKTRQ--------------GVDDAFYTLVREIR 165 (189)
T ss_dssp -CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999999 99999999988764
No 100
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=8e-18 Score=162.76 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=111.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|++|+|||||+++|+..... +...|+......+.+++.++++|||||+.+|...+..+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 87 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA---------------TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDY 87 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC---------------CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---------------ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 468999999999999999999975321 01123333445677788999999999999988877788
Q ss_pred HhhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-----C
Q 006610 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-----D 209 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~-----~ 209 (639)
++.+|++|+|+|++++... ....++..+.+ .+.|+++|+||+|+..... .+++.+.+...... .
T Consensus 88 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 88 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS------EAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC------HHHHHHHTTCSSCCC---CC
T ss_pred HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC------HHHHHHHhCCcccccccccc
Confidence 8999999999999886432 23344444432 5789999999999965221 12222332221100 1
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
....++++++||++|. |+++++++|.+++
T Consensus 162 ~~~~~~~~~~Sa~~g~--------------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRN--------------GYLEAFQWLSQYI 190 (190)
T ss_dssp SSCCEEEEECBTTTTB--------------SHHHHHHHHHTTC
T ss_pred ccceEEEEEeECCcCC--------------CHHHHHHHHHhhC
Confidence 1234689999999999 9999999998754
No 101
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=5.5e-18 Score=163.19 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=113.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.++|||||+++|+....... .....+.+.......+......+.||||||+.+|...+..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 83 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPE----------LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPS 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT----------CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCcc----------CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHH
Confidence 357999999999999999999997632211 1112244444444444445678999999999999888899
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+.+...... ..++..+.. .++|+++|+||+|+...... .++...+....+
T Consensus 84 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~------- 151 (195)
T 1x3s_A 84 YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD-----RNEGLKFARKHS------- 151 (195)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC-----HHHHHHHHHHTT-------
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC-----HHHHHHHHHHcC-------
Confidence 9999999999999987644333 334445544 36789999999998542211 112223333332
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||++|. |+++++++|.+.++.
T Consensus 152 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 152 MLFIEASAKTCD--------------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp CEEEECCTTTCT--------------THHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCC--------------CHHHHHHHHHHHHHh
Confidence 579999999998 999999999987754
No 102
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.75 E-value=3.2e-18 Score=164.02 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=113.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+..+|+++|+.|+|||||+++|+... ... . ..|+......+.+++.+++||||||+.+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-------~-------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT-------I-------SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS-------C-------CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc-------c-------cccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 356899999999999999999998652 100 0 1122233445666889999999999999888888
Q ss_pred HHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+++.+|++|+|+|+++... .....++..+.. .+.|+++|+||+|+..... ..+ +.+.+..... ...
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~----~~~~~~~~~~--~~~ 152 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNA----IQEALELDSI--RSH 152 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHH----HHHHTTGGGC--CSS
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHH----HHHHhChhhc--cCC
Confidence 88999999999999987643 333345555443 4789999999999965422 122 2222211101 123
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.++++++||++|. |+++++++|.+.++.
T Consensus 153 ~~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 153 HWRIQGCSAVTGE--------------DLLPGIDWLLDDISS 180 (186)
T ss_dssp CEEEEECCTTTCT--------------THHHHHHHHHHHHHT
T ss_pred ceEEEEeeCCCCC--------------CHHHHHHHHHHHHHh
Confidence 4689999999998 999999999887653
No 103
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=3.4e-18 Score=160.20 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=108.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+......... ...+.+.......+......+.||||||+.+|...+..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK----------KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS----------CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----------CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHH
Confidence 46799999999999999999999763221111 11122222222222223468999999999999888889
Q ss_pred HHhhccEEEEEEeCCCCCchh-HHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+++.+|++++|+|+.+....+ ...++..+.. .+.|+++|+||+|+...+... .+++.++....+ ++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 142 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK----NEEAEGLAKRLK-------LR 142 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-------CE
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC----HHHHHHHHHHcC-------Ce
Confidence 999999999999998754322 2334444433 388999999999985422111 122223333333 47
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |+++++++|.+.+
T Consensus 143 ~~~~Sa~~~~--------------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 143 FYRTSVKEDL--------------NVSEVFKYLAEKH 165 (168)
T ss_dssp EEECBTTTTB--------------SSHHHHHHHHHHH
T ss_pred EEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 9999999998 9999999998754
No 104
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=5.1e-18 Score=162.76 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=116.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG----- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~----- 133 (639)
+..+|+++|+.|+|||||+++|+... ...+...++|+......+.+++..++||||||+.+|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 73 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSID 73 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHH
Confidence 35789999999999999999998641 1223445777777777888889999999999999884
Q ss_pred -HHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 134 -GEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 134 -~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
.....+++ .+|++++|+|+.. ......++..+.+.+.|+++|+||+|+..... +.....++...++
T Consensus 74 ~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~---- 142 (188)
T 2wjg_A 74 EIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IEIDVDKLEKILG---- 142 (188)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT----
T ss_pred HHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcccccc-----chHHHHHHHHHhC----
Confidence 23444554 4999999999875 34455677777778999999999999742110 1112222333333
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
++++++||++|. |++++++.|.+.++..
T Consensus 143 ---~~~~~~Sa~~~~--------------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 143 ---VKVVPLSAAKKM--------------GIEELKKAISIAVKDK 170 (188)
T ss_dssp ---SCEEECBGGGTB--------------SHHHHHHHHHHHHTTC
T ss_pred ---CCeEEEEecCCC--------------CHHHHHHHHHHHHHhc
Confidence 469999999998 9999999999887653
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.75 E-value=1.9e-18 Score=169.14 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=110.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee--cCceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW--RENELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~--~~~~i~iIDTPGh~dF~~e 135 (639)
.+..+|+++|+.|+|||||+++|+.......... .+.......+.+ ..+.++||||||+.+|...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-------------t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP-------------TVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC-------------CSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC-------------eecceeEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 3467999999999999999999997643222111 111111222233 3456779999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHH
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLF 202 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~ 202 (639)
...+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+..... ..+.. .++...+.
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh-hhhhhhccccccccHHHHHHHH
Confidence 88899999999999999886554443 355555555 899999999999865322 11111 11222333
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..++. .|++++||++|. |+++++++|.+.+
T Consensus 174 ~~~~~------~~~~~~SA~~g~--------------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 174 KEIGA------VKYLECSALTQR--------------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHTTC------SEEEECCTTTCT--------------THHHHHHHHHHTT
T ss_pred HhcCC------cEEEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 33332 469999999999 9999999998754
No 106
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.75 E-value=2.8e-18 Score=163.00 Aligned_cols=160 Identities=20% Similarity=0.224 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec---CceEEEEeCCCCCCchH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGG 134 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~---~~~i~iIDTPGh~dF~~ 134 (639)
++..+|+++|+.|+|||||+++|+...... .....++.......+.++ ...++||||||+.+|..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ------------QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 73 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT------------TC---CCCSCEEEEECCSSSCCEEEEEECCC-------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc------------ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh
Confidence 456899999999999999999999763221 111222222333334443 46899999999999998
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH-------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
.+..+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+....... ..+++.++.....
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v---~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV---SEKSAQELAKSLG 150 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS---CHHHHHHHHHHTT
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC---CHHHHHHHHHhcC
Confidence 888889999999999999876543333 33333332 578999999999985321100 0112222222111
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |+++++++|.+.+
T Consensus 151 ------~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 151 ------DIPLFLTSAKNAI--------------NVDTAFEEIARSA 176 (182)
T ss_dssp ------SCCEEEEBTTTTB--------------SHHHHHHHHHHHH
T ss_pred ------CCeEEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998754
No 107
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.75 E-value=3.8e-18 Score=161.95 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=108.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
.+..+|+++|+.|+|||||+++|+..........+ .+..+. ..+.+++ ..++||||||+.+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t----------~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~~~ 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT----------IEDSYT---KICSVDGIPARLDILDTAGQEEFGAM 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTT----------CCEEEE---EEEEETTEEEEEEEEECCCTTTTSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCC----------cCceEE---EEEEECCEEEEEEEEECCCchhhHHH
Confidence 35689999999999999999999986332111111 111111 2233443 57899999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchh-HHHHHHHH----HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
...+++.+|++++|+|+.+..... ...++..+ ...++|+++|+||+|+....... .++...+....
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~----- 144 (181)
T 2fn4_A 74 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP----RSEASAFGASH----- 144 (181)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC----HHHHHHHHHHT-----
T ss_pred HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC----HHHHHHHHHHc-----
Confidence 889999999999999998753322 22333333 23478999999999985422111 11122222222
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++++++||++|. |+++++++|.+.+.
T Consensus 145 --~~~~~~~Sa~~~~--------------gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 145 --HVAYFEASAKLRL--------------NVDEAFEQLVRAVR 171 (181)
T ss_dssp --TCEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred --CCeEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999998 99999999987664
No 108
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.75 E-value=1.9e-18 Score=164.69 Aligned_cols=160 Identities=21% Similarity=0.142 Sum_probs=106.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+......... ...+.+. .....+....+.++||||||+.+|......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~----------~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD----------PTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC----------TTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC----------CCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHH
Confidence 46799999999999999999999653221111 1112222 222222223367899999999998777778
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHH----HHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++++|+|+.+....+. ..++..+ ...++|+++|+||+|+...+... .++...+...++
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------- 142 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS----YEEGKALAESWN------- 142 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-------
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec----HHHHHHHHHHhC-------
Confidence 8899999999999987433222 2233333 23478999999999985433211 122333333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+|++++||++|. |++++++.|++.+..
T Consensus 143 ~~~~~~Sa~~~~--------------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 143 AAFLESSAKENQ--------------TAVDVFRRIILEAEK 169 (181)
T ss_dssp CEEEECCTTSHH--------------HHHHHHHHHHHHHHT
T ss_pred CcEEEEecCCCC--------------CHHHHHHHHHHHHHH
Confidence 479999999998 999999999987643
No 109
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.75 E-value=1e-17 Score=156.84 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=107.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+..........+ .+... .....+....+.++||||||+.+|......+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t----------~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPT----------IEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCC----------SEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCC----------ccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHH
Confidence 368999999999999999999975322111111 11111 1122233345689999999999999999999
Q ss_pred HhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++++|+|+.+....+ ...++..+.. .++|+++|+||+|+...+... .+++..+...++ .+
T Consensus 72 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------~~ 141 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG----KEQGQNLARQWC------NC 141 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT------SC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC----HHHHHHHHHHcc------CC
Confidence 99999999999998753322 2334444433 388999999999985422111 122223333321 25
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++++||++|. |+++++++|.+.+
T Consensus 142 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 142 AFLESSAKSKI--------------NVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred cEEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 79999999999 9999999998765
No 110
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.75 E-value=6.5e-18 Score=158.33 Aligned_cols=156 Identities=15% Similarity=0.076 Sum_probs=92.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|++|+|||||+++|++... .......+.+.. ....+......+++|||||+.+|......+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~-----------~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED-----------GPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------------CEEE-EEEEETTEEEEEEEEECC------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc-----------cCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhh
Confidence 46899999999999999999974311 111112233332 223333445688999999999999888999
Q ss_pred HhhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
++.+|++++|+|+.+.... ....++..+.. .++|+++|+||+|+...+....++ ...+....+ +
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~----~~~~~~~~~-------~ 138 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE----GRACAVVFD-------C 138 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHH----HHHHHHHTT-------C
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHH----HHHHHHHhC-------C
Confidence 9999999999998865332 23345555544 378999999999986533211111 122222222 5
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|++++||++|. |+++++++|.+.+
T Consensus 139 ~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 139 KFIETSAALHH--------------NVQALFEGVVRQI 162 (166)
T ss_dssp EEEECBGGGTB--------------SHHHHHHHHHHHH
T ss_pred cEEEeccCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999999998754
No 111
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=166.99 Aligned_cols=163 Identities=20% Similarity=0.157 Sum_probs=109.1
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
...+..+|+|+|..|+|||||+++|+.......... ..+.+. .....+....+.++||||||+.+|...
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~----------t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDP----------TVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCC----------CSEEEE-EEEEC----CEEEEEEEECCCCTTCCC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCC----------ccceEE-EEEEEECCEEEEEEEEECCCccchHHH
Confidence 344678999999999999999999997643211111 112222 333334455688999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+...+..... +...+...++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~----~~~~~~~~~~---- 160 (201)
T 3oes_A 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV----EGKKLAESWG---- 160 (201)
T ss_dssp CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH----HHHHHHHHHT----
T ss_pred HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH----HHHHHHHHhC----
Confidence 8889999999999999987543332 234444433 37899999999998543221111 1222333333
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+|++++||++|. |+++++++|.+.+..
T Consensus 161 ---~~~~~~Sa~~~~--------------~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 161 ---ATFMESSARENQ--------------LTQGIFTKVIQEIAR 187 (201)
T ss_dssp ---CEEEECCTTCHH--------------HHHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCC--------------CHHHHHHHHHHHHHh
Confidence 479999999998 999999999887643
No 112
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.75 E-value=2.1e-18 Score=164.25 Aligned_cols=166 Identities=19% Similarity=0.115 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+..........++.+. .. ....+......++||||||+.+|...+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~----------~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDN----------FS-ANVVVNGATVNLGLWDTAGQEDYNRLRPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------------CB-CCCC-------CEEECCCC-CTTTTTGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeee----------EE-EEEEECCEEEEEEEEECCCChhhhhhHHh
Confidence 45789999999999999999999764322111111111 00 01112223467889999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHH------HHHHHHHHHHHhcCCC
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCD------EVESLVFDLFANLGAT 208 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~------~v~~~i~~l~~~~g~~ 208 (639)
+++.+|++++|+|+++....+.. .++..+... ++|+++|+||+|+......... ...++...+...++.
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 154 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA- 154 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-
Confidence 89999999999999875443333 344555443 7899999999998543221000 011223333333432
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.+++++||++|. |++++++.|.+.+..|
T Consensus 155 -----~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 155 -----PAYIECSSKSQE--------------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp -----SEEEECCTTTCT--------------THHHHHHHHHHHHSCC
T ss_pred -----CEEEEEECCCCC--------------CHHHHHHHHHHHHhcC
Confidence 369999999999 9999999999877554
No 113
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.75 E-value=2.2e-17 Score=153.73 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=106.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.+|+++|+.|+|||||+++|+..........+. +.. ......+....+.++||||||+.+|......++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTI----------EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC----------CEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCcc----------ceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhh
Confidence 589999999999999999999763321111111 111 111122222346789999999999999999999
Q ss_pred hhccEEEEEEeCCCCCchh-HHHHHHHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 141 ~~aD~allVVDa~~g~~~q-t~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
+.+|++++|+|+.+....+ ...++..+... ++|+++|+||+|+..... . .+++.++....+ +|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~-~----~~~~~~~~~~~~-------~~ 140 (166)
T 2ce2_X 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV-E----SRQAQDLARSYG-------IP 140 (166)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-C----HHHHHHHHHHHT-------CC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc-C----HHHHHHHHHHcC-------Ce
Confidence 9999999999988653322 23444444432 799999999999865221 1 122223333333 47
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++||++|. |+++++++|.+.+
T Consensus 141 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 141 YIETSAKTRQ--------------GVEDAFYTLVREI 163 (166)
T ss_dssp EEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 9999999998 9999999998765
No 114
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.74 E-value=5.4e-18 Score=165.18 Aligned_cols=159 Identities=19% Similarity=0.134 Sum_probs=109.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~e 135 (639)
....+|+|+|+.|+|||||+++|+....... ....++.......+.++ .+.++||||||+.+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS------------CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC------------CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 3568999999999999999999997632211 11222233333333333 468999999999998877
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH-------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~ 207 (639)
+..+++.+|++|+|+|+.++...+.. .++..+.. .++|+++|+||+|+..... . .+++..+....
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~-- 146 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV-A----TKRAQAWCYSK-- 146 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS-C----HHHHHHHHHHT--
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc-C----HHHHHHHHHhc--
Confidence 78889999999999999876443333 23333322 4789999999999863221 1 11222222211
Q ss_pred CCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
..+|++++||++|. |+++++++|.+.++
T Consensus 147 ----~~~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 147 ----NNIPYFETSAKEAI--------------NVEQAFQTIARNAL 174 (207)
T ss_dssp ----TSCCEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred ----CCceEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 13579999999998 99999999987764
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.74 E-value=6.1e-18 Score=161.43 Aligned_cols=165 Identities=15% Similarity=0.076 Sum_probs=112.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+..........+. +... .....+......++||||||+.+|......+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 73 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV----------FDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 73 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS----------CCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcc----------ccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHh
Confidence 4689999999999999999999764322111111 1111 1112223334678899999999998888888
Q ss_pred HhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhcC
Q 006610 140 VGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLG 206 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~g 206 (639)
++.+|++|+|+|+.++...+.. .++..+... ++|+++|+||+|+..... ....+ .++...+...++
T Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch-hhhhhcccccccCCHHHHHHHHHhcC
Confidence 9999999999999876544433 345555554 899999999999854321 11111 012222333332
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
. .+++++||++|. |+++++++|.+.+..+.
T Consensus 153 ~------~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 153 A------VKYLECSALTQR--------------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp C------SEEEECCTTTCT--------------THHHHHHHHHHHHSCCC
T ss_pred C------cEEEEecCCCcc--------------CHHHHHHHHHHHHhccc
Confidence 1 379999999999 99999999999887654
No 116
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=168.57 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=107.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
++..+|+|+|+.|+|||||+++|+..... .+....++.......+.+++ ..++||||||+.+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK------------QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC------------ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH
Confidence 45689999999999999999999865321 11112222222333344444 78999999999888877
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+......... +...+....
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~----~~~~~~~~~------ 160 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFL----EASRFAQEN------ 160 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHH----HHHHHHHHT------
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHH----HHHHHHHHc------
Confidence 8889999999999999987644333 334444443 37899999999998532211111 222333332
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++++++||++|. |+++++++|.+.+.
T Consensus 161 -~~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 161 -ELMFLETSALTGE--------------NVEEAFLKCARTIL 187 (200)
T ss_dssp -TCEEEEECTTTCT--------------THHHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999998 99999999887653
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.74 E-value=7.4e-18 Score=164.20 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=106.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|++|+|||||+++|...... . ...|+......+.+++..+++|||||+.+|...+..+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-----------~----~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-----------Q----HVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNY 89 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------------------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-----------c----cCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHH
Confidence 468999999999999999999754210 0 0112223345667788999999999999988888888
Q ss_pred HhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC--------
Q 006610 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG-------- 206 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g-------- 206 (639)
++.+|++|+|+|+++... .....++..+.+ .++|+++|+||+|+..... .+++.+.+....
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS------EERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC------HHHHHHHHTCTTTCCCSSCC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC------HHHHHHHhCccccccccccc
Confidence 999999999999987643 233444444433 4789999999999965211 122223332211
Q ss_pred -CCC-ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 -ATD-EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 -~~~-~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
... ....++++++||++|. |+++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~--------------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQ--------------GYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTB--------------SHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCC--------------CHHHHHHHHHHhc
Confidence 000 0124689999999999 9999999998764
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=4.5e-18 Score=161.91 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=109.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH----
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE---- 135 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e---- 135 (639)
..+|+|+|.+|+|||||+++|+..... ......++|.......+.+++..+.+|||||+.++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 72 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA-----------IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERI 72 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS-----------CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-----------eeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHH
Confidence 357999999999999999999865211 11223455555555667778888999999999765321
Q ss_pred ----HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 136 ----VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 136 ----v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
...+++.+|++|+|+|+++........++..+.+. ++|+++|+||+|+...... +.
T Consensus 73 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------~~----- 135 (172)
T 2gj8_A 73 GIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------MS----- 135 (172)
T ss_dssp HHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------EE-----
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------hh-----
Confidence 23467899999999999887665556666665543 6899999999997432110 00
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.....+++++||++|. |+++|+++|.+.+..
T Consensus 136 -~~~~~~~~~~SA~~g~--------------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 136 -EVNGHALIRLSARTGE--------------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EETTEEEEECCTTTCT--------------THHHHHHHHHHHC--
T ss_pred -hccCCceEEEeCCCCC--------------CHHHHHHHHHHHhhh
Confidence 0113579999999999 999999999988754
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=6.2e-18 Score=185.16 Aligned_cols=154 Identities=23% Similarity=0.353 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC--------Cc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA--------DF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~--------dF 132 (639)
++|+|+|++|+|||||+++|++... ...+...|+|.+.....+.|.+..++||||||+. .|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~-----------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~ 72 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI-----------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQI 72 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC-----------C-----------CEEEECTTCSSCCEEEC---------CHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-----------eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHH
Confidence 6899999999999999999986521 1234456889888888999999999999999986 56
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...+..+++.+|++|+|+|+.++.......+++.++..++|+++|+||+|+..... ++.+ +..+++.
T Consensus 73 ~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--------~~~~-~~~lg~~---- 139 (436)
T 2hjg_A 73 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--------NIYD-FYSLGFG---- 139 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------------CCCS-SGGGSSC----
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--------hHHH-HHHcCCC----
Confidence 67778899999999999999999998888888888888999999999999853211 1111 1123321
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||++|. |+.+|+++|.+.+|.
T Consensus 140 --~~~~iSA~~g~--------------gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 --EPYPISGTHGL--------------GLGDLLDAVAEHFKN 165 (436)
T ss_dssp --CCEECBTTTTB--------------THHHHHHHHHHTGGG
T ss_pred --CeEEEeCcCCC--------------ChHHHHHHHHHhcCc
Confidence 48999999999 999999999999874
No 120
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=5.3e-18 Score=172.42 Aligned_cols=169 Identities=16% Similarity=0.129 Sum_probs=118.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---- 134 (639)
...+|+|+|++|+|||||+++|++....... ....++|.......+.|+++.++||||||+.+|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~----------~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~ 90 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESK----------LGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEA 90 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC----------TTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccC----------CCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHH
Confidence 4689999999999999999999976421110 01123666666777889999999999999988632
Q ss_pred -------HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc-----CCCcEEEEc-CCCCCCCCHHHHHHH--HHHHH
Q 006610 135 -------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-----GLRPILLLN-KVDRPAVSEERCDEV--ESLVF 199 (639)
Q Consensus 135 -------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-----~lp~IvviN-KiD~~~~~~~~~~~v--~~~i~ 199 (639)
.+..+++.+|++|+|+|+.. +..+...+++.+.+. +.|+|+|+| |+|+.+.+...+..- .+++.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 91 LYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHH
Confidence 22336678999999999985 777788888877775 678888888 999975543221100 02233
Q ss_pred HHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++..++.... .+..+++||++|. |+++|++.|.+.++.
T Consensus 170 ~~~~~~~~~~~--~~~~~~~SA~~~~--------------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 170 KLVAACGGRIC--AFNNRAEGSNQDD--------------QVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHTTTCEE--ECCTTCCHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEE--EecCcccccccHH--------------HHHHHHHHHHHHHHh
Confidence 34444432110 0112788999998 999999999987753
No 121
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.74 E-value=3.5e-18 Score=160.67 Aligned_cols=158 Identities=18% Similarity=0.095 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev 136 (639)
+..+|+++|+.|+|||||+++|+....... ....++.......+.++ ...+.||||||+.+|....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 72 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDK------------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSS------------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcC------------CCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence 457999999999999999999997632211 11122222222233333 4578999999999998888
Q ss_pred HHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+...+... .+++.++....+
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 142 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS----IQEAESYAESVG------ 142 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT------
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC----HHHHHHHHHHcC------
Confidence 888899999999999987543333 234444333 578999999999985422111 112233333333
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++++++|.+.++
T Consensus 143 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 -AKHYHTSAKQNK--------------GIEELFLDLCKRMI 168 (170)
T ss_dssp -CEEEEEBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred -CeEEEecCCCCC--------------CHHHHHHHHHHHHh
Confidence 579999999998 99999999987653
No 122
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=2.9e-17 Score=163.47 Aligned_cols=164 Identities=13% Similarity=0.109 Sum_probs=109.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-----
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF----- 132 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF----- 132 (639)
.+..+|+|+|..|+|||||+++|+.... ......+.|.......+.+++..+.||||||+.++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 94 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV------------DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE------------EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC------------ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh
Confidence 3568999999999999999999986521 11223455555566666778899999999999432
Q ss_pred ----hHHHHHHHhhccEEEEEEeCCCCCch---hHHHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHH
Q 006610 133 ----GGEVERVVGMVEGAILVVDAGEGPLA---QTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (639)
Q Consensus 133 ----~~ev~~~l~~aD~allVVDa~~g~~~---qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~ 203 (639)
.......+..+|++|+|+|+++.... ....++..+... ++|+++|+||+|+...+... .+..+.+.++..
T Consensus 95 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 173 (228)
T 2qu8_A 95 NTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLS-IDNKLLIKQILD 173 (228)
T ss_dssp CHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhH-HHHHHHHHHHHH
Confidence 11223446778999999999876442 234556666665 89999999999986432110 111222333333
Q ss_pred hcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
..+ ..++++++||++|. |+++++++|.+.+.
T Consensus 174 ~~~-----~~~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 174 NVK-----NPIKFSSFSTLTGV--------------GVEQAKITACELLK 204 (228)
T ss_dssp HCC-----SCEEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred hcC-----CCceEEEEecccCC--------------CHHHHHHHHHHHHH
Confidence 322 12579999999999 99999999987663
No 123
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3e-17 Score=158.71 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=110.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|+.|+|||||+++|+..........+ .+.+. .....+....+.+.||||||+.+|......
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPT----------IEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCC----------CCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCc----------cccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHH
Confidence 4579999999999999999999975332111111 11111 112222333468999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCchh-HHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
+++.+|++|+|+|+.+..... ...++..+.+ .++|+++|+||+|+..... . .++...+...++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~~------ 144 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV-D----TREAQAVAQEWK------ 144 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS-C----HHHHHHHHHHHT------
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc-C----HHHHHHHHHHhC------
Confidence 999999999999998643322 2334444433 3789999999999864221 1 111222233333
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
++++++||++|. |+++|+++|.+.+...
T Consensus 145 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 145 -CAFMETSAKMNY--------------NVKELFQELLTLETRR 172 (199)
T ss_dssp -CEEEECBTTTTB--------------SHHHHHHHHHHHCSSS
T ss_pred -CeEEEEecCCCC--------------CHHHHHHHHHHHHhhh
Confidence 479999999998 9999999999988643
No 124
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.74 E-value=8.8e-18 Score=163.98 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
++..+|+|+|+.|+|||||+++|+...... .....++.......+.+++ +.++||||||+.+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN------------DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT------------TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC------------CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 446899999999999999999999763221 1112233333333444444 58999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+...+.... ++...+....+
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~----- 144 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY----DVAKEFADANK----- 144 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH----HHHHHHHHHcC-----
Confidence 88899999999999999876443333 34444443 3588999999999965322111 12223333332
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+|++++||++|. |+++++++|.+.+.
T Consensus 145 --~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 145 --MPFLETSALDST--------------NVEDAFLTMARQIK 170 (206)
T ss_dssp --CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999998 99999999987664
No 125
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=5.2e-18 Score=174.08 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=113.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------ 133 (639)
..+|+++|++|+|||||+++|++... ......|+|+..+...+.+ +..++||||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~------------~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e 69 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ------------RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEA 69 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC------------CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC------------cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHH
Confidence 46899999999999999999986411 1223347888777777777 8899999999999885
Q ss_pred HHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 134 GEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 134 ~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
.....++. .+|++|+|+|++.. .....++.++.+.++|+++|+||+|+..... +......+...++
T Consensus 70 ~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~l~~~lg----- 137 (272)
T 3b1v_A 70 KVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDGQG-----KKINVDKLSYHLG----- 137 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT-----
T ss_pred HHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCcCC-----cHHHHHHHHHHcC-----
Confidence 33455555 59999999999762 3345566777788999999999999732110 0011222222333
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+|++++||++|. |+++|+++|.+.+..
T Consensus 138 --~~vi~~SA~~g~--------------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 138 --VPVVATSALKQT--------------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp --SCEEECBTTTTB--------------SHHHHHHHHHHSCTT
T ss_pred --CCEEEEEccCCC--------------CHHHHHHHHHHHHhh
Confidence 579999999999 999999999987654
No 126
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.74 E-value=3.6e-18 Score=168.94 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=117.8
Q ss_pred CCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHH
Q 006610 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (639)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~e 135 (639)
......+|+++|+.|+|||||+++|+..... .......|++.......+....+.++||||||+.+|...
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE----------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT----------CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC----------CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH
Confidence 3445689999999999999999997654211 112234467777766666667789999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
...+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+...... .+...+....
T Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------~~~~~~~~~~------- 147 (221)
T 3gj0_A 81 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK------AKSIVFHRKK------- 147 (221)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC------GGGCCHHHHH-------
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc------HHHHHHHHHc-------
Confidence 88899999999999999886544433 344444443 8899999999998653221 1111122222
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++++++||++|. |+++++++|.+.+.
T Consensus 148 ~~~~~~~Sa~~~~--------------gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 NLQYYDISAKSNY--------------NFEKPFLWLARKLI 174 (221)
T ss_dssp TCEEEECBGGGTB--------------TTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999999 99999999988764
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.74 E-value=6e-18 Score=165.93 Aligned_cols=166 Identities=14% Similarity=0.074 Sum_probs=111.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|+.|+|||||+++|+..........++ +... .....+....+.++||||||+.+|...+..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----------FDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS----------CCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc----------ceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHh
Confidence 46799999999999999999999764322111111 1111 111122223468999999999999888888
Q ss_pred HHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHH-----HHHHHHHHHHhcCCCC
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDE-----VESLVFDLFANLGATD 209 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~-----v~~~i~~l~~~~g~~~ 209 (639)
+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...... ... ..++..++...++.
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-- 153 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGY-LADHTNVITSTQGEELRKQIGA-- 153 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHH-HHTCSSCCCHHHHHHHHHHHTC--
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccc-cccccCCCCHHHHHHHHHHcCC--
Confidence 99999999999999875443332 455555554 8999999999998543210 000 12233334444442
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
.+++++||++|. |+++++++|++.+..+.
T Consensus 154 ----~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 154 ----AAYIECSSKTQQ--------------NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp ----SEEEECCTTTCT--------------THHHHHHHHHHHHHCC-
T ss_pred ----ceEEEccCCCCC--------------CHHHHHHHHHHHHhhhh
Confidence 369999999999 99999999998876554
No 128
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=1.7e-17 Score=159.51 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~ev~ 137 (639)
..+|+++|+.|+|||||+++|+..........+. +.. ....+.++ .+.++||||||+.+|.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 87 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----------EDS---YRKQVVIDGETCLLDILDTAGQEEYSAMRD 87 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTC----------CEE---EEEEEEETTEEEEEEEEECCC---------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCcc----------ceE---EEEEEEECCEEEEEEEEECCChHHHHHHHH
Confidence 4689999999999999999999763321111110 111 11223333 35699999999999999999
Q ss_pred HHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+..... . .+++.++...++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~-~----~~~~~~~~~~~~------ 156 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV-D----TKQAHELAKSYG------ 156 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-C----HHHHHHHHHHHT------
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccC-C----HHHHHHHHHHcC------
Confidence 99999999999999987644333 334444433 3789999999999865211 1 122233333333
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+|++++||++|. |+++++++|.+.+
T Consensus 157 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 181 (190)
T 3con_A 157 -IPFIETSAKTRQ--------------GVEDAFYTLVREI 181 (190)
T ss_dssp -CCEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999998 9999999998765
No 129
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.73 E-value=6.7e-18 Score=161.04 Aligned_cols=159 Identities=20% Similarity=0.221 Sum_probs=108.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+..+|+++|+.|+|||||+++|+.... .. ...|+......+.+++..+++|||||+.+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-----------~~----~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-----------VT----TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-----------EE----ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-----------Cc----cCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 3468999999999999999999975411 01 11122233445667789999999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
.+++.+|++++|+|+.+... .....++..+.. .+.|+++|+||+|+..... ..+ +.+.+...... ..
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~----i~~~~~~~~~~--~~ 152 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASE----VSKELNLVELK--DR 152 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHH----HHHHTTTTTCC--SS
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC--HHH----HHHHhCccccc--CC
Confidence 88999999999999987643 333444555442 5789999999999865321 112 22222211111 23
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++++++||++|. |+++++++|.+.++
T Consensus 153 ~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 153 SWSIVASSAIKGE--------------GITEGLDWLIDVIK 179 (183)
T ss_dssp CEEEEEEBGGGTB--------------THHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCc--------------CHHHHHHHHHHHHH
Confidence 4689999999998 99999999987653
No 130
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.73 E-value=2e-17 Score=155.38 Aligned_cols=158 Identities=19% Similarity=0.139 Sum_probs=98.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH-HHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG-EVER 138 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~-ev~~ 138 (639)
..+|+++|++|+|||||+++|+...+.... ....+.........+....+.+.+|||||+.+|.. ....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 71 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH----------EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDH 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------CEEEEEEEETTEEEEEEEECCCCC--------CH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc----------cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhh
Confidence 468999999999999999999854221110 00111122222222333346788999999999876 5556
Q ss_pred HHhhccEEEEEEeCCCCCch-hHHHHHHHHHHc----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++++|+|+++.... ....++..+... ++|+++|+||+|+...+... .++...+....+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------- 140 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS----LEEGRHLAGTLS------- 140 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-------
T ss_pred hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC----HHHHHHHHHHcC-------
Confidence 78889999999999874322 233444544443 78999999999985322211 112223333333
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |++++++++++.+
T Consensus 141 ~~~~~~Sa~~~~--------------~v~~l~~~l~~~i 165 (169)
T 3q85_A 141 CKHIETSAALHH--------------NTRELFEGAVRQI 165 (169)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred CcEEEecCccCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998764
No 131
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.73 E-value=4.5e-18 Score=164.45 Aligned_cols=164 Identities=14% Similarity=0.091 Sum_probs=111.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+..+|+++|+.|+|||||+++|+..........++ +.+.. ....+....+.++||||||+.+|.....
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~----------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 89 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV----------FENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRP 89 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee----------eeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhH
Confidence 345799999999999999999999864321111111 11111 1122222345679999999999998888
Q ss_pred HHHhhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
.+++.+|++|+|+|+.+...... ..++..+... ++|+++|+||+|+....... ...+++.++...+++.
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~----- 162 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDD--VTKQEGDDLCQKLGCV----- 162 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTC--CCHHHHHHHHHHHTCS-----
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCc--ccHHHHHHHHHhcCCC-----
Confidence 89999999999999987654443 2344444444 68999999999986421100 0122333444444431
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||++|. |+++++++|++.+..
T Consensus 163 -~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 163 -AYIEASSVAKI--------------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp -CEEECBTTTTB--------------SHHHHHHHHHHHHHC
T ss_pred -EEEEeecCCCC--------------CHHHHHHHHHHHHHh
Confidence 29999999999 999999999987643
No 132
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.73 E-value=7.7e-18 Score=185.63 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH--
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER-- 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~-- 138 (639)
.+|+|+|++|+|||||+++|++.. ........|+|.+.....+.++++.++||||||+.+|...++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~-----------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~g 302 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQE-----------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEG 302 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------CEEEEETTEEEEEEC---------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHH
Confidence 579999999999999999998762 1223344578888877888889999999999999887655443
Q ss_pred ------HHhhccEEEEEEeCCCCCch----hHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 139 ------VVGMVEGAILVVDAGEGPLA----QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 139 ------~l~~aD~allVVDa~~g~~~----qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
+++.+|++|+|+|+.++... ....++..+. ++|+|+|+||+|+........ +++ ...+.
T Consensus 303 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~----~~l----~~~~~- 371 (476)
T 3gee_A 303 IRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI----RAI----ADGTG- 371 (476)
T ss_dssp -----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH----HHH----HHHHT-
T ss_pred HHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH----HHH----HhcCC-
Confidence 56789999999999988776 4444444443 789999999999976544211 112 11111
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC-CCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP-PPK 256 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP-~p~ 256 (639)
.|++++||++|. |+++|+++|.+.++ .+.
T Consensus 372 -----~~~i~vSAktg~--------------GI~eL~~~i~~~~~~~~~ 401 (476)
T 3gee_A 372 -----TEVIGISALNGD--------------GIDTLKQHMGDLVKNLDK 401 (476)
T ss_dssp -----SCEEECBTTTTB--------------SHHHHHHHHTHHHHSSCC
T ss_pred -----CceEEEEECCCC--------------CHHHHHHHHHHHHhhccC
Confidence 469999999999 99999999999887 544
No 133
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.73 E-value=2.6e-17 Score=163.14 Aligned_cols=161 Identities=21% Similarity=0.194 Sum_probs=110.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+|+|..++|||||+++++..........+ -|.....+...+....++++||||+|+.+|...+..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~T----------ig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~ 81 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT----------IGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPS 81 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCc----------cceEEEEEEEEecceEEEEEEEECCCchhhhhHHHH
Confidence 3468999999999999999999976432221111 122222333333334568899999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCch-hHHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
+++.+|++++|+|.++.... ....+|..+.. .++|+|+|.||+|+...+.-. .++..++...++ +
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~----~~e~~~~a~~~~-------~ 150 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS----IEEGERKAKELN-------V 150 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-------C
T ss_pred HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCccc----HHHHhhHHHHhC-------C
Confidence 99999999999998765433 33445555543 368899999999985432211 122333444444 4
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+++++||++|. |++++|+.|++.++.
T Consensus 151 ~~~e~SAktg~--------------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 151 MFIETSAKAGY--------------NVKQLFRRVAAALPG 176 (216)
T ss_dssp EEEEEBTTTTB--------------SHHHHHHHHHHHC--
T ss_pred eeEEEeCCCCc--------------CHHHHHHHHHHHHHh
Confidence 68999999999 999999999998864
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=3.9e-17 Score=178.99 Aligned_cols=163 Identities=22% Similarity=0.306 Sum_probs=118.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---- 134 (639)
...+|+|+|++|+|||||+++|++.. ........|+|.+.....+.+++..+.+|||||+..+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~-----------~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~ 247 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE-----------RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPR 247 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST-----------TEEECCCC------CCEEEEETTEEEEESSCSCC---------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc-----------ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchh
Confidence 45799999999999999999998752 122334457888777788889999999999999854332
Q ss_pred --------HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 135 --------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 135 --------ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
....+++.+|++++|+|+.++...+...++..+...+.|+++|+||+|+...+.....++.+++...+..+.
T Consensus 248 ~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 248 TVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 327 (439)
T ss_dssp --CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC
Confidence 234678899999999999999888888888888889999999999999865332223334444433333222
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
..|++++||++|. |+++|++.+.+.+
T Consensus 328 ------~~~~~~~SA~~g~--------------gv~~l~~~i~~~~ 353 (439)
T 1mky_A 328 ------YSPLIFTSADKGW--------------NIDRMIDAMNLAY 353 (439)
T ss_dssp ------TSCEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred ------CCcEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999999 9999999998655
No 135
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=8.4e-18 Score=166.71 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=109.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+|+|+.++|||||+++|+...... +....++.......+.+++ +.++||||||+.+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNM------------DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCC------------CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh
Confidence 456899999999999999999999763221 1112222223333444454 68999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+....... .++...+....+
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~----- 149 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP----TEESKTFAQENQ----- 149 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC----HHHHHHHHHHTT-----
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC----HHHHHHHHHHcC-----
Confidence 8888999999999999987654333 3344555443 78999999999985422111 112223333322
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||++|. |+++++++|.+.+..
T Consensus 150 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 150 --LLFTETSALNSE--------------NVDKAFEELINTIYQ 176 (223)
T ss_dssp --CEEEECCCC-CC--------------CHHHHHHHHHHHHTT
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHHH
Confidence 579999999998 999999999988764
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=160.89 Aligned_cols=162 Identities=14% Similarity=0.024 Sum_probs=93.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+..........+. +.. ......+......++||||||+.+|......
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~----------~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV----------FER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCC----------CEE-EEEEEEETTEEEEEEEEEC------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc----------cee-EEEEEEECCEEEEEEEEECCCchhhhHHHHH
Confidence 45799999999999999999998653211111110 111 1111222223458999999999999988889
Q ss_pred HHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHH----------HHHHHHHHh
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVE----------SLVFDLFAN 204 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~----------~~i~~l~~~ 204 (639)
+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+..... ..+.. ++...+...
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 179 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS--LVNKLRRNGLEPVTYHRGQEMARS 179 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH--HHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch--hhhhhcccccCcccHHHHHHHHHh
Confidence 99999999999999875443332 344444443 789999999999865321 11111 122333333
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++. .+++++||++|. |++++++.|.+.+.
T Consensus 180 ~~~------~~~~~~SA~~g~--------------gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 180 VGA------VAYLECSARLHD--------------NVHAVFQEAAEVAL 208 (214)
T ss_dssp TTC------SEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred cCC------CEEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 332 379999999998 99999999987653
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=174.25 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=109.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+|+|++|+|||||+++|+.... ... .-|+......+.+++.+++||||||+.+|......
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-----------~~~----~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 228 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-----------VTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 228 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-----------EEE----EEETTEEEEEEEETTEEEEEEECC-----CCSHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-----------CCc----ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHH
Confidence 346899999999999999999975421 111 12445556677888999999999999999999999
Q ss_pred HHhhccEEEEEEeCCCCCch-hHHHHHHHHH-H---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPLA-QTKFVLAKAL-K---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~-qt~~~l~~~~-~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+++.... ....++..+. . .++|+|+|+||+|+...... .++. +.+..... ....
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~i~----~~~~~~~~--~~~~ 300 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEIT----DKLGLHSL--RHRN 300 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHH----HHHTCTTC--CSSC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH--HHHH----HHhchhhh--hcCC
Confidence 99999999999999764332 2233333332 2 27899999999999764321 2222 22211111 1235
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
++++++||++|. |+++|+++|.+.+.
T Consensus 301 ~~~~~vSAk~g~--------------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 301 WYIQATCATSGD--------------GLYEGLDWLSNQLR 326 (329)
T ss_dssp EEEEECBTTTTB--------------THHHHHHHHHHHHT
T ss_pred CEEEEEECCCCc--------------CHHHHHHHHHHHHH
Confidence 789999999998 99999999998764
No 138
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.72 E-value=1.5e-17 Score=164.09 Aligned_cols=166 Identities=16% Similarity=0.099 Sum_probs=112.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
....+|+|+|..++|||||+++|+..........++ +.+. .....+....+.++||||||+.+|.....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV----------FENY-TACLETEEQRVELSLWDTSGSPYYDNVRP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee----------eeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHH
Confidence 345799999999999999999999864322211111 1111 12223344557899999999999988888
Q ss_pred HHHhhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHH--------HHHHHHHHHHHHhc
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERC--------DEVESLVFDLFANL 205 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~--------~~v~~~i~~l~~~~ 205 (639)
.+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+........ ....++...+...+
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 89999999999999988654443 3455556554 889999999999854210000 00012233333444
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccc-hHHHHHHHHhhCCC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRHVPP 254 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-l~~Lld~I~~~lP~ 254 (639)
++ .+++++||++|. | ++++|+.|++.+..
T Consensus 174 ~~------~~~~e~SA~~g~--------------g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GA------EIYLEGSAFTSE--------------KSIHSIFRTASMLCLN 203 (214)
T ss_dssp TC------SEEEECCTTTCH--------------HHHHHHHHHHHHHHHC
T ss_pred CC------CEEEEeccCCCc--------------ccHHHHHHHHHHHHhc
Confidence 32 169999999998 8 99999999887643
No 139
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.72 E-value=3e-17 Score=158.01 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=104.8
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
.+..+|+|+|..|+|||||+++|+..........+ +... . ..+.+++ +.++||||||+.+|.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-----------~~~~-~--~~~~~~~~~~~l~i~Dt~G~~~~~-- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-----------GGRF-K--KEIVVDGQSYLLLIRDEGGPPELQ-- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-----------CEEE-E--EEEEETTEEEEEEEEECSSSCCHH--
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-----------cceE-E--EEEEECCEEEEEEEEECCCChhhh--
Confidence 34679999999999999999999986432111110 1111 1 2333444 678889999999986
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~ 210 (639)
+++.+|++++|+|+++....+. ..++..+.. .++|+++|+||+|+.......+ ..+++.++...++.
T Consensus 82 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~--- 153 (184)
T 3ihw_A 82 ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKR--- 153 (184)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTT---
T ss_pred ---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccccc--CHHHHHHHHHHcCC---
Confidence 7888999999999988655444 445555554 3679999999999842111000 01223334444331
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|. |++++|++|++.+
T Consensus 154 ---~~~~e~Sa~~~~--------------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 154 ---CTYYETCATYGL--------------NVERVFQDVAQKV 178 (184)
T ss_dssp ---CEEEEEBTTTTB--------------THHHHHHHHHHHH
T ss_pred ---CeEEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999999 9999999998754
No 140
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.72 E-value=1.2e-17 Score=160.54 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=111.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|+.|+|||||+++|+.... .... .|+......+.+++..++||||||+.+|...+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-----------~~~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-----------VTTV----PTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-----------EEEC----SSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-----------CCcC----CCCceEEEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 457899999999999999999964311 0111 1222334456677899999999999998877777
Q ss_pred HHhhccEEEEEEeCCCCCc-hhHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccc
Q 006610 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~ 213 (639)
+++.+|++|+|+|+++... .....++..... .+.|+++|+||+|+..... ..++. +.+....+ ....
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~----~~~~~~~~--~~~~ 157 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIA----EQLGVSSI--MNRT 157 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHH----HHTTGGGC--CSSC
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHH----HHhChhhc--cCCc
Confidence 8899999999999987643 223344444443 3789999999999965432 11222 11111111 1224
Q ss_pred ccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||++|. |+++++++|.+.++.
T Consensus 158 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 158 WTIVKSSSKTGD--------------GLVEGMDWLVERLRE 184 (189)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHHHHH
T ss_pred eEEEEccCCCcc--------------CHHHHHHHHHHHHHh
Confidence 689999999998 999999999887643
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=1.2e-17 Score=183.98 Aligned_cols=156 Identities=24% Similarity=0.350 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCC--------CCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG--------HAD 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPG--------h~d 131 (639)
.++|+|+|++|+|||||+++|++.. ........|+|.+.....+.|.+..++|||||| +..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~-----------~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~ 91 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER-----------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQ 91 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE-----------EC-----------CEEEECTTCSSCCEEECCCC------CCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC-----------CcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHH
Confidence 5789999999999999999998752 112334568999998999999999999999999 556
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
|...+..+++.+|++|+|+|+.++.......+++.+.+.++|+|+|+||+|+..... ...+ +..++..
T Consensus 92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--------~~~e-~~~lg~~--- 159 (456)
T 4dcu_A 92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--------NIYD-FYSLGFG--- 159 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------------CC-SGGGSSS---
T ss_pred HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh--------hHHH-HHHcCCC---
Confidence 777888899999999999999999999999999999889999999999999853211 1111 1223332
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
+++++||++|. |+.+|++.+.+.++..
T Consensus 160 ---~~~~iSA~~g~--------------gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 160 ---EPYPISGTHGL--------------GLGDLLDAVAEHFKNI 186 (456)
T ss_dssp ---SEEECCTTTCT--------------THHHHHHHHHTTGGGS
T ss_pred ---ceEEeeccccc--------------chHHHHHHHHhhcccc
Confidence 36799999998 9999999999888643
No 142
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.71 E-value=2.4e-17 Score=160.62 Aligned_cols=161 Identities=15% Similarity=0.106 Sum_probs=108.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+..........++ +.+.. ....+......++||||||+.+|......+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 93 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLS 93 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS----------CCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc----------cceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHh
Confidence 5799999999999999999999764322111111 11111 111222234689999999999998888888
Q ss_pred HhhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHhcC
Q 006610 140 VGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLG 206 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~~g 206 (639)
++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+..... ....+ .++..++...++
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH-TRRELAKMKQEPVRSEEGRDMANRIS 172 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH-HHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc-chhhhcccccCcCCHHHHHHHHHhCC
Confidence 999999999999987533332 3455555554 899999999999865321 11111 112223333333
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
. .+++++||++|. |+++++++|.+.+
T Consensus 173 ~------~~~~~~SA~~g~--------------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 173 A------FGYLECSAKTKE--------------GVREVFEMATRAG 198 (201)
T ss_dssp C------SEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred C------cEEEEeeCCCCC--------------CHHHHHHHHHHHH
Confidence 2 269999999999 9999999998653
No 143
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.4e-17 Score=161.35 Aligned_cols=165 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~ 139 (639)
..+|+++|+.|+|||||+++|+..........+. +.+... ...+......+.||||||+.+|......+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 93 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV----------FENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLS 93 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcc----------cceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhh
Confidence 4699999999999999999999763321111111 111111 11222223689999999999998888888
Q ss_pred HhhccEEEEEEeCCCCCchhH--HHHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHHH---------HHHHHHHHhcC
Q 006610 140 VGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVE---------SLVFDLFANLG 206 (639)
Q Consensus 140 l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v~---------~~i~~l~~~~g 206 (639)
++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+..... ....+. ++...+...++
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH-VRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp CTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH-HHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc-chhhhhhcccCCCCHHHHHHHHHhcC
Confidence 999999999999987533222 3455555554 899999999999854311 101110 11122222222
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
. .+++++||++|. |+++|+++|.+.+..+.
T Consensus 173 ~------~~~~~~SA~~g~--------------gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 173 A------YDYLECSAKTKE--------------GVREVFETATRAALQKR 202 (207)
T ss_dssp C------SEEEECCTTTCT--------------THHHHHHHHHHHHHSCC
T ss_pred C------CEEEEeeCCCCC--------------CHHHHHHHHHHHHHHHh
Confidence 1 269999999999 99999999998775543
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.70 E-value=7.5e-17 Score=165.54 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=103.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCc----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADF---- 132 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF---- 132 (639)
...||+++|++|+|||||+|+|+.......... .......+++++......+.+++ .+++||||||+.|+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~ 82 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP----GPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS 82 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC----CcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch
Confidence 357999999999999999999976522110000 00001133455555555566655 48999999998543
Q ss_pred ---hHHH-------HHHHhh-------------ccEEEEEEeC-CCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH
Q 006610 133 ---GGEV-------ERVVGM-------------VEGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 133 ---~~ev-------~~~l~~-------------aD~allVVDa-~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (639)
...+ ..++.. +|++|+++++ ..+.......+++.+.. ++|+|+|+||+|+. ..
T Consensus 83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~--~~ 159 (274)
T 3t5d_A 83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL--TP 159 (274)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGS--CH
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCC--CH
Confidence 2222 455554 7789998865 45888899998888877 89999999999984 44
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.......+.+.+.+...+ ++++.+||+++. |+.+++++|.+.+|-
T Consensus 160 ~e~~~~~~~i~~~l~~~~-------i~v~~~sa~~~~--------------~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHK-------IKIYEFPETDDE--------------EENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHHHTT-------CCCCCC-------------------------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHcC-------CeEEcCCCCCCh--------------hHHHHHHHHhcCCCc
Confidence 444555555655554433 468889999998 999999999987764
No 145
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=156.44 Aligned_cols=162 Identities=19% Similarity=0.139 Sum_probs=108.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec--CceEEEEeCCCCCCchH-
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGG- 134 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~--~~~i~iIDTPGh~dF~~- 134 (639)
....+|+++|..|+|||||+++|+...+.. ....+++.......+.++ ...+.||||||+.+|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 88 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDS------------AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 88 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCG------------GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCc------------cCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhh
Confidence 346799999999999999999996542210 011122222222223333 45788999999998865
Q ss_pred HHHHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
....+++.+|++|+|+|+++.... ....++..+.. .++|+|+|+||+|+........+ +...+...++
T Consensus 89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~----~~~~~a~~~~--- 161 (195)
T 3cbq_A 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLE----EGRHLAGTLS--- 161 (195)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHH----HHHHHHHHTT---
T ss_pred hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHH----HHHHHHHHhC---
Confidence 566778999999999999864332 23345555544 37899999999999653221111 2223333332
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
++++++||++|. |++++++.|++.+....
T Consensus 162 ----~~~~e~Sa~~~~--------------~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 162 ----CKHIETSAALHH--------------NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp ----CEEEEEBTTTTB--------------SHHHHHHHHHHHHHTTC
T ss_pred ----CEEEEEcCCCCC--------------CHHHHHHHHHHHHHHhc
Confidence 469999999999 99999999998876543
No 146
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.70 E-value=4.6e-17 Score=158.09 Aligned_cols=163 Identities=17% Similarity=0.018 Sum_probs=106.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
.+..+|+++|+.|+|||||+++|+..........+. + ......+.+++ +.+.||||||+.+|...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~----------~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA----------F---DNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCS----------S---EEEEEEEEETTEEEEEEEEECCCSTTCSSS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc----------c---ceeEEEEEECCEEEEEEEEECCCCHHHHHH
Confidence 346799999999999999999999653211111111 1 11112333444 57889999999999887
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHH---------HHHHHHHHH
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDE---------VESLVFDLF 202 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~---------v~~~i~~l~ 202 (639)
+..+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+..... ...+ ..++...+.
T Consensus 85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK-VLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHH-HHHHHHTTTCCCCCHHHHHHHH
T ss_pred hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchh-hhhhhcccccccCCHHHHHHHH
Confidence 77889999999999999876444433 344445443 889999999999854211 0000 011223333
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..++. .+++++||++|. |+++++++|++.+..
T Consensus 164 ~~~~~------~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 164 EEIKA------ASYIECSALTQK--------------NLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHTC------SEEEECCTTTCT--------------THHHHHHHHHHHHHH
T ss_pred HhcCC------cEEEEEecCCCC--------------CHHHHHHHHHHHHhc
Confidence 33332 379999999999 999999999887643
No 147
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.70 E-value=4.4e-17 Score=156.11 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC-----------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH----------- 129 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh----------- 129 (639)
.+|+++|+.|+|||||+++|+.... ......++|...... .+. .++||||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~------------~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~ 65 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV------------RRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQ 65 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC------------SSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC------------ccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHH
Confidence 5899999999999999999986522 112233554443332 233 7999999994
Q ss_pred CCchHHHHHHHhh----ccEEEEEEeCCCC-----------CchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHH
Q 006610 130 ADFGGEVERVVGM----VEGAILVVDAGEG-----------PLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEV 194 (639)
Q Consensus 130 ~dF~~ev~~~l~~----aD~allVVDa~~g-----------~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v 194 (639)
..|......+++. ++.++.|+|+... ...++..++..+...++|+++|+||+|+.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------ 139 (190)
T 2cxx_A 66 ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ------ 139 (190)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH------
T ss_pred HHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHH------
Confidence 4455555555554 4566677776431 112233455566677999999999999865331
Q ss_pred HHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 195 ~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
+...++...++........+++++||++|. |+++++++|.+.+..
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------------~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 140 -EVINFLAEKFEVPLSEIDKVFIPISAKFGD--------------NIERLKNRIFEVIRE 184 (190)
T ss_dssp -HHHHHHHHHHTCCGGGHHHHEEECCTTTCT--------------THHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhhhhccCCcEEEEecCCCC--------------CHHHHHHHHHHhcch
Confidence 122233344444322223468999999999 999999999887643
No 148
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=156.12 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=104.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|..|+|||||+++|+..........++ +.+. .....+....+.+.||||||+.+|.. +.+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL----------EDTY-SSEETVDHQPVHLRVMDTADLDTPRN-CER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTC----------CEEE-EEEEEETTEEEEEEEEECCC---CCC-THH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc----------ccee-eEEEEECCEEEEEEEEECCCCCcchh-HHH
Confidence 45799999999999999999999864322111111 1111 11222333456899999999998865 367
Q ss_pred HHhhccEEEEEEeCCCCCchh-HHHHHHHHHH------cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+...+... .++..++...++
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~----- 158 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT----KAEGVALAGRFG----- 158 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC----HHHHHHHHHHcC-----
Confidence 899999999999998653333 2334454443 489999999999985422111 122233333333
Q ss_pred ccccEEeccc-ccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASA-KEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA-~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++|| ++|. |++++++.|++.+
T Consensus 159 --~~~~e~Sa~~~g~--------------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 --CLFFEVSACLDFE--------------HVQHVFHEAVREA 184 (187)
T ss_dssp --CEEEECCSSSCSH--------------HHHHHHHHHHHHH
T ss_pred --CcEEEEeecCccc--------------cHHHHHHHHHHHH
Confidence 47999999 8998 9999999998764
No 149
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.70 E-value=1.5e-17 Score=163.73 Aligned_cols=162 Identities=17% Similarity=0.106 Sum_probs=107.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCCchHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~dF~~ev 136 (639)
....+|+|+|+.|+|||||+++|+...... ......+.+............ +.++||||||+.+|....
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK----------NYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC----------EEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC----------CCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH
Confidence 346799999999999999999998542110 011111222222111111111 679999999999998888
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH-HHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.+|++|+|+|+.++...+.. .++..+.. .++|+++|+||+|+...+... .+....+... .
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~-------~ 147 (218)
T 4djt_A 79 DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS----KKLVMEVLKG-------K 147 (218)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC----HHHHHHHTTT-------C
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC----HHHHHHHHHH-------c
Confidence 8899999999999999987654443 33344433 378999999999986422111 1122222222 2
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.++++++||++|. |+++++++|.+.+..
T Consensus 148 ~~~~~~~Sa~~g~--------------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 148 NYEYFEISAKTAH--------------NFGLPFLHLARIFTG 175 (218)
T ss_dssp CCEEEEEBTTTTB--------------TTTHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCC--------------CHHHHHHHHHHHHhc
Confidence 3679999999999 999999999887643
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.5e-16 Score=154.05 Aligned_cols=163 Identities=19% Similarity=0.132 Sum_probs=105.6
Q ss_pred CCCCCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch
Q 006610 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (639)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~ 133 (639)
.+...+..+|+++|+.|+|||||+++|+..........+. +... .....+....+.++||||||+.+ .
T Consensus 22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL----------ESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC----------CEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCC----------CceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 3333456899999999999999999999864321111111 1111 11222333357899999999998 7
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.....+++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+...+..... +...+...++
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~~~~~~~~~-- 163 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE----EGEKLATELA-- 163 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH----HHHHHHHHHT--
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH----HHHHHHHHhC--
Confidence 7788899999999999999864322 22334444433 48899999999998542211111 2222333332
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++++++||++|.+ |+++++++|++.+
T Consensus 164 -----~~~~~~Sa~~g~~-------------gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 -----CAFYECSACTGEG-------------NITEIFYELCREV 189 (196)
T ss_dssp -----SEEEECCTTTCTT-------------CHHHHHHHHHHHH
T ss_pred -----CeEEEECCCcCCc-------------CHHHHHHHHHHHH
Confidence 5799999999851 6899999988765
No 151
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.70 E-value=7.4e-19 Score=171.00 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=105.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+|+|+.|+|||||+++|+... ...+....++.......+.+++ +.++||||||+.+|...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT------------YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC------------CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC------------CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 456899999999999999999997541 1122233444444445555555 68999999999999888
Q ss_pred HHHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHHc---CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+..+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+...+.... ++...+...+
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~------ 168 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY----TTAKEFADSL------ 168 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCS----CC-CHHHHTT------
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCH----HHHHHHHHHc------
Confidence 8888999999999999988654333 3444445443 789999999999854321100 1111222222
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+|++++||++|. |+++++++|.+.+.
T Consensus 169 -~~~~~~vSA~~g~--------------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 169 -GIPFLETSAKNAT--------------NVEQSFMTMAAEIK 195 (199)
T ss_dssp -TCCBCCCCC---H--------------HHHHHHHHHTTTTT
T ss_pred -CCeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999998 99999999988764
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=1.4e-16 Score=166.29 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=117.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEee-cCceEEEEeCCCCCCc-----h
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADF-----G 133 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~-~~~~i~iIDTPGh~dF-----~ 133 (639)
..+|+++|.+|+|||||+++|+.... .......+.|+......+.+ ++.+++||||||+.+| .
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~-----------~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 71 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYS-----------AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFT 71 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCC-----------TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-----------CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhh
Confidence 36899999999999999999986511 11223456777777777665 5789999999999998 5
Q ss_pred HHHHHHHhhccEEEEEEeCCCCCchhHHHHH----HHHHH--cCCCcEEEEcCCCCCCCCHH--HHHHHHHHHHHHHHhc
Q 006610 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVL----AKALK--YGLRPILLLNKVDRPAVSEE--RCDEVESLVFDLFANL 205 (639)
Q Consensus 134 ~ev~~~l~~aD~allVVDa~~g~~~qt~~~l----~~~~~--~~lp~IvviNKiD~~~~~~~--~~~~v~~~i~~l~~~~ 205 (639)
.....+++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+...+.. ......+++.++...+
T Consensus 72 ~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp TTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 5667788999999999999987655544332 22222 28999999999998542111 0112335566666666
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
|+. .+|++++||++ . ++.+++..++..+-
T Consensus 152 g~~----~~~~~~tSa~~-~--------------~i~e~~~~iv~~li 180 (307)
T 3r7w_A 152 GFP----NLIGFPTSIWD-E--------------SLYKAWSQIVCSLI 180 (307)
T ss_dssp TCC----SCEEEECCTTS-S--------------HHHHHHHHHHHTTC
T ss_pred CCC----CeEEEEeeecC-C--------------hHHHHHHHHHHHHc
Confidence 643 26799999999 5 78888888877653
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.53 E-value=1.3e-18 Score=169.86 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=107.5
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHH
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev 136 (639)
..+..+|+++|+.|+|||||+++|+..........+..+. ......+....+.++||||||+.+|....
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-----------~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-----------YSANVMVDGKPVNLGLWDTAGQEDYDRLR 95 (204)
Confidence 3456899999999999999999998653211111111100 01112223345678899999999999888
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHH
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFA 203 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~ 203 (639)
..+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+...... ...+ .++...+..
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 3th5_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT-IEKLKEKKLTPITYPQGLAMAK 174 (204)
Confidence 9999999999999998876544433 344455444 8899999999998643210 0000 011111111
Q ss_pred hcCCCCccccc-cEEecccccCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 204 NLGATDEQLDF-PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 204 ~~g~~~~~~~~-Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
. ..+ |++++||++|. |++++++.|.+.
T Consensus 175 ~-------~~~~~~~~vSA~~g~--------------gi~~l~~~l~~~ 202 (204)
T 3th5_A 175 E-------IGAVKYLECSALTQR--------------GLKTVFDEAIRA 202 (204)
Confidence 1 223 79999999999 999999998764
No 154
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=1.5e-16 Score=160.89 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=116.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCC--------C
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH--------A 130 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh--------~ 130 (639)
...+|+++|++|+|||||+++|++....... ....++|.......+.+++..++||||||+ .
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~----------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~ 89 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSR----------LGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTD 89 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-------------------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCcccc----------CCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHH
Confidence 3579999999999999999999976332110 112356667777788889999999999998 6
Q ss_pred CchHHHHHHH----hhccEEEEEEeCCCCCchhHHHHHHHHHHc------CCCcEEEEcCCCCCCCCHHHHHHHH--HHH
Q 006610 131 DFGGEVERVV----GMVEGAILVVDAGEGPLAQTKFVLAKALKY------GLRPILLLNKVDRPAVSEERCDEVE--SLV 198 (639)
Q Consensus 131 dF~~ev~~~l----~~aD~allVVDa~~g~~~qt~~~l~~~~~~------~lp~IvviNKiD~~~~~~~~~~~v~--~~i 198 (639)
+|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+|+|.||+|+.+.+...+.... +.+
T Consensus 90 ~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l 168 (247)
T 3lxw_A 90 PGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRAL 168 (247)
T ss_dssp TTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHH
Confidence 6777777777 89999999999974 667777777777664 7899999999999775553322110 235
Q ss_pred HHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 199 FDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 199 ~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..++..++.. ++..++.... .....++.+||+.|.+.++.
T Consensus 169 ~~l~~~~g~~-------~~~~~~~~~~---------~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 169 RELVAECGGR-------VCAFDNRATG---------REQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHHTTTC-------EEECCTTCCH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCe-------EEEEeCCCCc---------cccHHHHHHHHHHHHHHHHH
Confidence 5666665532 3434333210 00112899999999888763
No 155
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.68 E-value=1.8e-17 Score=161.24 Aligned_cols=157 Identities=20% Similarity=0.153 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH--cCCCCCccccccccccccccceeEeeeeEEEeec----CceEEEEeCCCCCCc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ--CGADIPHERAMDSISLERERGITIASKVTGISWR----ENELNMVDTPGHADF 132 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~--~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~----~~~i~iIDTPGh~dF 132 (639)
...+|+++|+.|+|||||+++|+.. ..... ....+.++.....+.++ .+.++||||||+.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 86 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKD------------YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86 (208)
T ss_dssp EEEEEEEC----------------------------------------------CEEEECTTSSEEEEEEEEETTTTHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCC------------CCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH
Confidence 3579999999999999999999875 22111 01111112233344455 468999999999999
Q ss_pred hHHHHHHHhhccEEEEEEeCCCCCch-hHHHHHHHHHH------cCCCcEEEEcCCCCCC-CCHHHHHHHHHHHHHHHHh
Q 006610 133 GGEVERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK------YGLRPILLLNKVDRPA-VSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 133 ~~ev~~~l~~aD~allVVDa~~g~~~-qt~~~l~~~~~------~~lp~IvviNKiD~~~-~~~~~~~~v~~~i~~l~~~ 204 (639)
...+..+++.+|++|+|+|++++... ....++..+.. .++|+++|+||+|+.. ..... .+++.++...
T Consensus 87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~----~~~~~~~~~~ 162 (208)
T 2yc2_C 87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR----LDMAQDWATT 162 (208)
T ss_dssp HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC----HHHHHHHHHH
T ss_pred HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC----HHHHHHHHHH
Confidence 98888889999999999999876543 33345555554 4789999999999864 11111 1233344444
Q ss_pred cCCCCccccccEEeccccc-CCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 205 LGATDEQLDFPVLYASAKE-GWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~-g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++ ++++++||++ |. |+++++++|.+.+
T Consensus 163 ~~-------~~~~~~Sa~~~~~--------------gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 163 NT-------LDFFDVSANPPGK--------------DADAPFLSIATTF 190 (208)
T ss_dssp TT-------CEEEECCC---------------------CHHHHHHHHHH
T ss_pred cC-------CEEEEeccCCCCc--------------CHHHHHHHHHHHH
Confidence 43 5799999999 98 9999999988765
No 156
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.67 E-value=5.1e-16 Score=147.39 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=100.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|..|+|||||+++|+...... ...+ .+.. ......+......++||||||+.+ ..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t----------~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~ 68 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKT----------ESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AK 68 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSC----------SSSE-EEEEEEETTEEEEEEEEECSSSCC-----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCC----------ccee-EEEEEEECCEEEEEEEEECCCCch-----hH
Confidence 35789999999999999999999864321 1111 1111 112222222346789999999987 35
Q ss_pred HHhhccEEEEEEeCCCCCchhHHH-HHHHHHH------cCCCcEEEEcCCCCCC--CCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKF-VLAKALK------YGLRPILLLNKVDRPA--VSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~-~l~~~~~------~~lp~IvviNKiD~~~--~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
+++.+|++|+|+|+++....+... ++..+.. .++|+++|+||+|+.. .+... .+++.++....+
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~----~~~~~~~~~~~~--- 141 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG----DARARALXADMK--- 141 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC----HHHHHHHHHHHS---
T ss_pred HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC----HHHHHHHHHhhc---
Confidence 788899999999998765443333 2223322 3789999999999842 11111 112223333221
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |+++++++|.+.+
T Consensus 142 ---~~~~~~~Sa~~~~--------------~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 ---RCSYYETXATYGL--------------NVDRVFQEVAQKV 167 (178)
T ss_dssp ---SEEEEEEBTTTTB--------------THHHHHHHHHHHH
T ss_pred ---CCeEEEEeccccC--------------CHHHHHHHHHHHH
Confidence 2579999999998 9999999998764
No 157
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.67 E-value=1.1e-16 Score=153.38 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=107.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
....+|+++|+.|+|||||+++|+..........++ +... .....+......+.||||||+.+|.....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 73 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENY-TASFEIDTQRIELSLWDTSGSPYYDNVRP 73 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------ceeE-EEEEEECCEEEEEEEEECCCChhhhhhHH
Confidence 346799999999999999999999863321111111 1111 11122223346899999999999987777
Q ss_pred HHHhhccEEEEEEeCCCCCchhHH--HHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHh
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFAN 204 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~ 204 (639)
.+++.+|++|+|+|+.+....+.. .++..+.. .+.|+++|+||+|+.... ....++ .++...+...
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANMAKQ 152 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHHHHHHHH
Confidence 888999999999999875443332 34444444 378999999999985321 111110 1223333333
Q ss_pred cCCCCccccccEEecccc-cCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 205 LGATDEQLDFPVLYASAK-EGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~-~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++. ++++++||+ +|. |++++++.|.+.+
T Consensus 153 ~~~------~~~~e~Sa~~~~~--------------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 153 IGA------ATYIECSALQSEN--------------SVRDIFHVATLAC 181 (184)
T ss_dssp HTC------SEEEECBTTTBHH--------------HHHHHHHHHHHHH
T ss_pred cCC------cEEEEeeecCCCc--------------CHHHHHHHHHHHH
Confidence 332 479999999 677 9999999988653
No 158
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.67 E-value=1e-16 Score=176.00 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH--
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER-- 138 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~-- 138 (639)
.+|+|+|++|+|||||+++|++.... ......++|.+.....+.+++..++||||||+.++...++.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a-----------~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~g 293 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRA-----------IVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIG 293 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBS-----------CCSCCTTCCHHHHHHEEEETTEEEEECC---------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcc-----------cccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHH
Confidence 47999999999999999999987321 12223466666665667778999999999999887655444
Q ss_pred ------HHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 139 ------VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 139 ------~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
+++.+|++|+|+|+.++...+...+++.+.. .|+|+|+||+|+....... .+..+ ..
T Consensus 294 i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~----------~~~~~-----~~ 356 (462)
T 3geh_A 294 VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT----------SLEYP-----EN 356 (462)
T ss_dssp -----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST----------TCCCC-----TT
T ss_pred HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH----------HHHHh-----cc
Confidence 4677999999999999888888887777643 7999999999996532210 01111 12
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
..|++++||++|. |+++|+++|.+.+....
T Consensus 357 ~~~~i~iSAktg~--------------Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 357 ITQIVHTAAAQKQ--------------GIDSLETAILEIVQTGK 386 (462)
T ss_dssp CCCEEEEBTTTTB--------------SHHHHHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCC--------------CHHHHHHHHHHHHhccC
Confidence 3679999999999 99999999999876543
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.67 E-value=2.3e-16 Score=174.04 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=117.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCC-Cch------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA-DFG------ 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~-dF~------ 133 (639)
.+|+|+|.+|+|||||+++|++.. ........++|.+.....+.+++..++||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~-----------~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~ 312 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED-----------RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERL 312 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT-----------BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC-----------CCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHH
Confidence 589999999999999999999872 11223345777777777888889999999999998 653
Q ss_pred --HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 134 --GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 134 --~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
.....+++.+|++|+|+|+.++...+..++++.+ .+.|+|+|+||+|+..... .. ++.+++ +
T Consensus 313 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~--~~----~~~~~~---~----- 376 (482)
T 1xzp_A 313 GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN--EE----EIKNKL---G----- 376 (482)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC--HH----HHHHHH---T-----
T ss_pred HHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC--HH----HHHHHh---c-----
Confidence 3356788999999999999988777777777655 4789999999999964311 11 222221 1
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
..+|++++||++|. |+++|+++|.+.+.
T Consensus 377 ~~~~~i~iSAktg~--------------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 TDRHMVKISALKGE--------------GLEKLEESIYRETQ 404 (482)
T ss_dssp CSTTEEEEEGGGTC--------------CHHHHHHHHHHHTH
T ss_pred CCCcEEEEECCCCC--------------CHHHHHHHHHHHHh
Confidence 12579999999999 99999999988764
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.66 E-value=1.5e-16 Score=156.10 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=107.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
+...+|+++|..|+|||||+++|+..........++ +.+. .....+......++||||||+.+|.....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 94 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENY-TASFEIDTQRIELSLWDTSGSPYYDNVRP 94 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc----------ceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHH
Confidence 346799999999999999999999863321111111 1111 11112223346899999999999988777
Q ss_pred HHHhhccEEEEEEeCCCCCchhH--HHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHHh
Q 006610 138 RVVGMVEGAILVVDAGEGPLAQT--KFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFAN 204 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~~ 204 (639)
.+++.+|++|+|+|+++...... ..++..+.+ .+.|+++|+||+|+.... ....++ .++...+...
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANMAKQ 173 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch-hhhhhhcccccCCCCHHHHHHHHHH
Confidence 88899999999999987544333 234444544 378999999999985321 111110 1223333334
Q ss_pred cCCCCccccccEEecccc-cCCCCCcccCCCcccccchHHHHHHHHhh
Q 006610 205 LGATDEQLDFPVLYASAK-EGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~-~g~~~~~~~~~~~~~~~gl~~Lld~I~~~ 251 (639)
++. ++++++||+ +|. |++++++.|++.
T Consensus 174 ~~~------~~~~e~SAk~~~~--------------gv~~lf~~l~~~ 201 (205)
T 1gwn_A 174 IGA------ATYIECSALQSEN--------------SVRDIFHVATLA 201 (205)
T ss_dssp HTC------SEEEECCTTTCHH--------------HHHHHHHHHHHH
T ss_pred cCC------CEEEEeeeccCCc--------------CHHHHHHHHHHH
Confidence 332 469999999 677 999999998865
No 161
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.66 E-value=5.1e-16 Score=172.70 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+|+|.+|+|||||+++|+...... ...|+......+.++++.++||||||+.+|...+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~---------------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 385 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT---------------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 385 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC---------------CCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC---------------cCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHH
Confidence 45799999999999999999999763211 012444555667888999999999999999988889
Q ss_pred HHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-Cccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-DEQL 212 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~-~~~~ 212 (639)
+++.+|++|+|+|+++....+. ..++..+.+ .++|+|+|+||+|+...... .+ +.+. ++.. ....
T Consensus 386 ~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~----~~~~---~~~~~~~~~ 456 (497)
T 3lvq_E 386 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP--HE----IQEK---LGLTRIRDR 456 (497)
T ss_dssp GGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH--HH----HHHH---TTCTTCCSS
T ss_pred HhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH--HH----HHHH---hchhhhhcC
Confidence 9999999999999987643332 234444433 48899999999999654221 11 2121 2211 1123
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.++++++||++|. |+++++++|.+.+..
T Consensus 457 ~~~~~~~SA~~g~--------------gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 457 NWYVQPSCATSGD--------------GLYEGLTWLTSNYKS 484 (497)
T ss_dssp CEEEEECBTTTTB--------------THHHHHHHHHHHCC-
T ss_pred CeEEEEEECCCCC--------------CHHHHHHHHHHHHHh
Confidence 4689999999999 999999999988743
No 162
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.62 E-value=7e-16 Score=163.08 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=110.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~d------- 131 (639)
+.+|+|+|.+++|||||+++|+... ...+.....|+......+.+.+ ..+.||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~------------~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~ 225 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK------------PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG 225 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC------------CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC------------CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch
Confidence 4589999999999999999997641 1122233556666666677775 8999999999643
Q ss_pred chHHHHHHHhhccEEEEEEeCCC----CCchhHHHHHHHHHHc-----CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHH
Q 006610 132 FGGEVERVVGMVEGAILVVDAGE----GPLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~----g~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~ 202 (639)
+.....+.+..+|++|+|+|+++ ....+...++..+..+ ++|+++|+||+|+.... +..+++ .
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-----e~~~~l---~ 297 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-----ENLEAF---K 297 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-----HHHHHH---H
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-----HHHHHH---H
Confidence 44566666777999999999875 2333444555666653 78999999999985421 112222 2
Q ss_pred HhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+... ++++++||+++. |+++|+++|.+.+..
T Consensus 298 ~~l~~~-----~~v~~iSA~tg~--------------gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 298 EKLTDD-----YPVFPISAVTRE--------------GLRELLFEVANQLEN 330 (342)
T ss_dssp HHCCSC-----CCBCCCSSCCSS--------------TTHHHHHHHHHHHTS
T ss_pred HHhhcC-----CCEEEEECCCCc--------------CHHHHHHHHHHHHhh
Confidence 223211 579999999999 999999999988754
No 163
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=9.1e-16 Score=163.73 Aligned_cols=197 Identities=17% Similarity=0.225 Sum_probs=100.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCc--eEEEEeCCCCCCchH---
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN--ELNMVDTPGHADFGG--- 134 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~--~i~iIDTPGh~dF~~--- 134 (639)
..+|+|+|+.|+|||||+++|+..... .....+....+..+.+++......+.+.+. .+++|||||+.|+..
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~---~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLY---PERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCC---CCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 478999999999999999999754211 011111111222234444443344444443 799999999955432
Q ss_pred ----HHH-------HHHhhc-------------cEEEEEEeC-CCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHH
Q 006610 135 ----EVE-------RVVGMV-------------EGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (639)
Q Consensus 135 ----ev~-------~~l~~a-------------D~allVVDa-~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (639)
.+. .+++.+ |+++++|++ ..+.......+++.+ ..++|+|+|+||+|+.. ..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~--~~ 190 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLT--LK 190 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSC--HH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCC--HH
Confidence 222 444443 357888875 566666665565554 46899999999999854 33
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCCCCCCCCceeEEEe
Q 006610 190 RCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTM 269 (639)
Q Consensus 190 ~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~~~~~~p~~~~V~~ 269 (639)
.+....+++.+.+... .+|++++||++|.+ . ..+..+++.|.+.+|.+....+.++.+
T Consensus 191 ev~~~k~~i~~~~~~~-------~i~~~~~Sa~~~~~-~----------e~~~~l~~~i~~~ip~~vv~s~~~~~~---- 248 (361)
T 2qag_A 191 ERERLKKRILDEIEEH-------NIKIYHLPDAESDE-D----------EDFKEQTRLLKASIPFSVVGSNQLIEA---- 248 (361)
T ss_dssp HHHHHHHHHHHHTTCC--------CCSCCCC--------------------CHHHHHHHHHTCSCEECCCSEEC------
T ss_pred HHHHHHHHHHHHHHHC-------CCCEEeCCCcCCCc-c----------hhHHHHHHHHHhcCCCCEeCCCCcccc----
Confidence 3333334454444332 36799999999973 1 157788899988888765544443321
Q ss_pred eeeecccceEEEEEEEe-eeee
Q 006610 270 MEKDFYLGRILTGRVSS-GVVS 290 (639)
Q Consensus 270 ~~~d~~~G~i~~grV~s-G~l~ 290 (639)
.|+.+.||.|. |.+.
T Consensus 249 ------~g~~~~gr~ypwg~~~ 264 (361)
T 2qag_A 249 ------KGKKVRGRLYPWGVVE 264 (361)
T ss_dssp ----------CEEECCSSCCEE
T ss_pred ------CCeEEEEEecCCceEe
Confidence 36666666653 4443
No 164
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=1.3e-15 Score=159.54 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev 136 (639)
...+|+++|.+|+|||||+++|+......... ..+.......+..++ ..++||||||+.+|....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI-------------PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC-------------CCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccC-------------CcccceeEEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 35789999999999999999999764322111 111111122233333 466799999999998888
Q ss_pred HHHHhhccEEEEEEeCCCCCchhHH--HHHHHHHHc--CCCcEEEEcCCCCCCCCHHHHHHH---------HHHHHHHHH
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFA 203 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~~v---------~~~i~~l~~ 203 (639)
..+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+..... ..... .++..++..
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc-hhhhccccccccccHHHHHHHHH
Confidence 8889999999999999886544443 344555554 889999999999854311 11110 112223333
Q ss_pred hcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
..+. .+++++||++|. |++++++.|.+.+..|
T Consensus 300 ~~~~------~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 300 EIGA------VKYLECSALTQR--------------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HTTC------SEEEECCTTTCT--------------THHHHHHHHHHHHHC-
T ss_pred HcCC------cEEEEecCCCCc--------------CHHHHHHHHHHHHhcC
Confidence 3332 379999999999 9999999998876543
No 165
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=2.8e-15 Score=147.92 Aligned_cols=159 Identities=15% Similarity=0.098 Sum_probs=100.2
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCC-chH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHAD-FGG 134 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~d-F~~ 134 (639)
....+|+|+|.+|+|||||+++|++....... +. ...|.+...+ .+.+++ ..+.+|||+|... +..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-----~~----~~~g~d~~~~--~i~~~~~~~~l~~~Dt~g~~~~~~~ 103 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----DC----EVLGEDTYER--TLMVDGESATIILLDMWENKGENEW 103 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-----C-------CCTTEEEE--EEEETTEEEEEEEECCTTTTHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----cC----CccceeeEEE--EEEECCeeeEEEEeecCCCcchhhh
Confidence 34578999999999999999999853211000 00 0112222222 233343 4678999999887 333
Q ss_pred HHHHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006610 135 EVERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (639)
Q Consensus 135 ev~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~ 209 (639)
....+++.+|++|+|+|.++.-..+ ...++..+.+ .++|+|+|.||+|+...+....+ +...+....
T Consensus 104 l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~----e~~~~a~~~---- 175 (211)
T 2g3y_A 104 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS----EGRACAVVF---- 175 (211)
T ss_dssp HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHH----HHHHHHHHH----
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHH----HHHHHHHHc----
Confidence 3344567789999999987643322 2334444443 37899999999998532211111 111122222
Q ss_pred ccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |++++|+.|++.+
T Consensus 176 ---~~~~~e~SAk~g~--------------~v~elf~~l~~~i 201 (211)
T 2g3y_A 176 ---DCKFIETSAAVQH--------------NVKELFEGIVRQV 201 (211)
T ss_dssp ---TCEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred ---CCEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999999 9999999998765
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=151.08 Aligned_cols=167 Identities=23% Similarity=0.229 Sum_probs=99.7
Q ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch---
Q 006610 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG--- 133 (639)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~--- 133 (639)
....++|+|+|++|+|||||+++|++..... ......++|.......+.+++..++||||||+.+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~----------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFH----------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN 95 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSC----------C-------CCSCEEEEEEETTEEEEEEECCSCC-----C
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCc----------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH
Confidence 3457899999999999999999999763211 111223667777777888999999999999976532
Q ss_pred ----HHHHHH----HhhccEEEEEEeCCCCCchhHHHHHHHHH-----HcCCCcEEEEcCCCCCCCCHHHHHHH----HH
Q 006610 134 ----GEVERV----VGMVEGAILVVDAGEGPLAQTKFVLAKAL-----KYGLRPILLLNKVDRPAVSEERCDEV----ES 196 (639)
Q Consensus 134 ----~ev~~~----l~~aD~allVVDa~~g~~~qt~~~l~~~~-----~~~lp~IvviNKiD~~~~~~~~~~~v----~~ 196 (639)
.+..+. .+.+|++|+|+|+.. .......++..+. ....|+++|+||+|+..... +.+. .+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~i~~~~~ 172 (239)
T 3lxx_A 96 AETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTN--LHDYLREAPE 172 (239)
T ss_dssp HHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCccc--HHHHHHhchH
Confidence 233333 345699999999874 3334444444432 23568999999999854321 1111 12
Q ss_pred HHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 197 ~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.+.+++..++. .+++.++..+. .....++.+||+.|...+
T Consensus 173 ~l~~l~~~~~~-------~~~~~~~~~~~---------~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 173 DIQDLMDIFGD-------RYCALNNKATG---------AEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HHHHHHHHHSS-------SEEECCTTCCH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------EEEEEECCCCc---------cccHHHHHHHHHHHHHHH
Confidence 45555555543 24444443221 001128899999887665
No 167
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=5.5e-15 Score=145.34 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=88.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+..+|+++|+.|+|||||+++|+....... + ... ..++ ...+....++||||||+.+|...+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~-----~~~--~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~ 73 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V-----VSQ--EPLS-----AADYDGSGVTLVDFPGHVKLRYKLS 73 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----C-----CCS--SCEE-----ETTGGGSSCEEEECCCCGGGTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----e-----eec--CceE-----EEEeeCceEEEEECCCcHHHHHHHH
Confidence 4568999999999999999999998632110 0 000 1111 1122667899999999999998888
Q ss_pred HHHhh----ccEEEEEEeCC-CC-CchhHHHHHHHHHH-------cCCCcEEEEcCCCCCCCCH-HHHH-HHHHHHHHHH
Q 006610 138 RVVGM----VEGAILVVDAG-EG-PLAQTKFVLAKALK-------YGLRPILLLNKVDRPAVSE-ERCD-EVESLVFDLF 202 (639)
Q Consensus 138 ~~l~~----aD~allVVDa~-~g-~~~qt~~~l~~~~~-------~~lp~IvviNKiD~~~~~~-~~~~-~v~~~i~~l~ 202 (639)
.+++. +|++|+|+|+. .. .......++..+.. .++|+++|+||+|+..... .... .+.+++..+.
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 153 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVI 153 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHH
Confidence 88887 99999999988 22 22333333333322 4899999999999976543 1111 1222233332
Q ss_pred HhcCCCCccccccEEecccccCC
Q 006610 203 ANLGATDEQLDFPVLYASAKEGW 225 (639)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~ 225 (639)
... .++++++||++|.
T Consensus 154 ~~~-------~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 154 ERR-------KKSLNEVERKINE 169 (218)
T ss_dssp HHH-------HHHHHC-------
T ss_pred HHH-------hcccccccccccc
Confidence 221 2457888888876
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.59 E-value=1.4e-14 Score=154.44 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=106.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH----
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---- 134 (639)
...+|+++|++|+|||||+++|+.... ......+.|.......+.+++..+.+|||||+.++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 233 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP------------EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERN 233 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC------------EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC------------ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhh
Confidence 467999999999999999999976521 1122234455555556666788999999999876421
Q ss_pred ----H-HHHHHhhccEEEEEEeCCCCC--chh-HHHHHHHHHH-c-CCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 135 ----E-VERVVGMVEGAILVVDAGEGP--LAQ-TKFVLAKALK-Y-GLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 135 ----e-v~~~l~~aD~allVVDa~~g~--~~q-t~~~l~~~~~-~-~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
. +......+|++|+|+|+.... ... ...++..+.. . +.|+|+|+||+|+.. ...+ +++.+++..
T Consensus 234 ~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~--~~~~----~~~~~~~~~ 307 (357)
T 2e87_A 234 EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD--EENI----KRLEKFVKE 307 (357)
T ss_dssp HHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC--HHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC--hHHH----HHHHHHHHh
Confidence 1 112223589999999987643 222 2344554443 2 899999999999853 2222 223333332
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
. .+|++++||++|. |+++|+++|.+.+.
T Consensus 308 ~-------~~~~~~iSA~~g~--------------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 308 K-------GLNPIKISALKGT--------------GIDLVKEEIIKTLR 335 (357)
T ss_dssp T-------TCCCEECBTTTTB--------------THHHHHHHHHHHHH
T ss_pred c-------CCCeEEEeCCCCc--------------CHHHHHHHHHHHHH
Confidence 2 2579999999999 99999999987763
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.59 E-value=8.8e-15 Score=156.07 Aligned_cols=165 Identities=21% Similarity=0.172 Sum_probs=106.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-----h
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF-----G 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF-----~ 133 (639)
.++.|+|+|++|+|||||+++|++.. ...+...+.|.+.....+.+++..+.++||||+.+. .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~------------~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv 245 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT------------QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV 245 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC------------ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH
Confidence 45679999999999999999998651 122233466666666778888899999999997331 1
Q ss_pred ---HHHHHHHhhccEEEEEEeCCCCC--c-hhHHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 134 ---GEVERVVGMVEGAILVVDAGEGP--L-AQTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 134 ---~ev~~~l~~aD~allVVDa~~g~--~-~qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
..+...+..+|.+++|+|+.+.. . .+...+...+.. .+.|+|+|.||+|+..... .+..+.+.++...
T Consensus 246 e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDL---YKKLDLVEKLSKE 322 (364)
T ss_dssp HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchH---HHHHHHHHHHHHH
Confidence 12233567899999999998764 2 222223333333 4679999999999965432 1112222222233
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
+... ..+++++||++|. |++.|+++|.+.++.|.
T Consensus 323 l~~~----~~~~~~~SA~~g~--------------gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 323 LYSP----IFDVIPISALKRT--------------NLELLRDKIYQLATQLS 356 (364)
T ss_dssp HCSC----EEEEEECBTTTTB--------------SHHHHHHHHHHHHHHHC
T ss_pred hcCC----CCcEEEEECCCCc--------------CHHHHHHHHHHHhcccC
Confidence 3111 2468999999999 99999999988776544
No 170
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.58 E-value=4.2e-15 Score=142.53 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEE---eecCceEEEEeCCCCCCchHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI---SWRENELNMVDTPGHADFGGEVE 137 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~---~~~~~~i~iIDTPGh~dF~~ev~ 137 (639)
.+|+|+|.+|+|||||+++|+....... .......|+.+......+ ......+.+|||||+.+|.....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~--------~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL--------GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC--------CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhH
Confidence 5799999999999999999986311000 000011122222111111 12467899999999988877777
Q ss_pred HHHhhccEEEEEEeCCCCC--chhHHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHH-HHHHHhcCCCCccc
Q 006610 138 RVVGMVEGAILVVDAGEGP--LAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLV-FDLFANLGATDEQL 212 (639)
Q Consensus 138 ~~l~~aD~allVVDa~~g~--~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i-~~l~~~~g~~~~~~ 212 (639)
.+++.+|++++|+|.+++. ......++..+.. .+.|+++|.||+|+... ........+. ..+...+++..
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~--- 149 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRGFPA--- 149 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTTSCE---
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcCCcc---
Confidence 8889999999999988763 2233345554443 37889999999998542 1111111111 12211222210
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
..+++++||++|. .+++.|++.|.+.++.
T Consensus 150 ~~~~~~~Sa~~~~-------------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 150 IRDYHFVNATEES-------------DALAKLRKTIINESLN 178 (184)
T ss_dssp EEEEEECCTTSCC-------------HHHHHHHHHHHHHHHC
T ss_pred hhheEEEecccCc-------------hhHHHHHHHHHHHHhc
Confidence 0138999999983 1799999999887654
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.57 E-value=1.1e-14 Score=150.60 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCC------ccc---c------------------cccccc------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP------HER---A------------------MDSISL------------ 99 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~------~~~---v------------------~D~~~~------------ 99 (639)
..++|+|+|.+|+|||||+++|++....... ... . .+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999976542100 000 0 111100
Q ss_pred ccccceeEeeeeEEEeec-CceEEEEeCCCCC-------------CchHHHHHHHhhccEEE-EEEeCCCCCchhHH-HH
Q 006610 100 ERERGITIASKVTGISWR-ENELNMVDTPGHA-------------DFGGEVERVVGMVEGAI-LVVDAGEGPLAQTK-FV 163 (639)
Q Consensus 100 e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~-------------dF~~ev~~~l~~aD~al-lVVDa~~g~~~qt~-~~ 163 (639)
....|++.......+... ...++||||||+. .|...+..+++.++.+| +|+|+..+...+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000223222222222222 4789999999964 35566778888888777 69999988777764 47
Q ss_pred HHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHH
Q 006610 164 LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (639)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~ 243 (639)
++.+...+.|+++|+||+|+....... .+ .+...-.....-.+|++++||++|. |+++
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~-~~-------~~~~~~~~~~~~~~~v~~~SA~~~~--------------gi~~ 242 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTDA-RD-------VLENKLLPLRRGYIGVVNRSQKDID--------------GKKD 242 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCCC-HH-------HHTTCSSCCTTCEEECCCCCCBCTT--------------SCBC
T ss_pred HHHhCCCCCeEEEEEEccccCCCCchH-HH-------HHhCCcCcCCCCcEEEECCChhhcc--------------cccc
Confidence 777777789999999999986432211 11 1111000000012478999999998 8888
Q ss_pred HHHHHHhh
Q 006610 244 LLDAIIRH 251 (639)
Q Consensus 244 Lld~I~~~ 251 (639)
|+++|.+.
T Consensus 243 l~~~l~~~ 250 (299)
T 2aka_B 243 ITAALAAE 250 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 172
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.57 E-value=4.3e-15 Score=158.21 Aligned_cols=173 Identities=18% Similarity=0.133 Sum_probs=107.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccccccc------------------ccceeEeeeeE--------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLER------------------ERGITIASKVT-------- 112 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~------------------ergiTi~~~~~-------- 112 (639)
+.++|+|+|++|+|||||+++|............+.|.++... ..+..+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4678999999999999999999865321111111111111111 11222211111
Q ss_pred --------EEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 113 --------GISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 113 --------~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.+.+.++.+.||||||... .....+..+|.+|+|+|+..+...+... . ....+|.++|+||+|+.
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 1234678999999999654 2334568999999999987664433221 1 11346999999999984
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 185 AVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 185 ~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
. ........+++.+.+..+......+..|++++||++|. |+++|+++|.++++.
T Consensus 231 ~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~--------------Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 231 H--HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR--------------GLAELWDTVERHRQV 284 (355)
T ss_dssp G--HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB--------------SHHHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC--------------CHHHHHHHHHHHHHH
Confidence 3 22333444555555444432223334689999999999 999999999988753
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=6.6e-15 Score=153.56 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=78.7
Q ss_pred cCceEEEEeCCCCCC-------------chHHHHHHHhhccEEEEEEeC-CCCCchhH-HHHHHHHHHcCCCcEEEEcCC
Q 006610 117 RENELNMVDTPGHAD-------------FGGEVERVVGMVEGAILVVDA-GEGPLAQT-KFVLAKALKYGLRPILLLNKV 181 (639)
Q Consensus 117 ~~~~i~iIDTPGh~d-------------F~~ev~~~l~~aD~allVVDa-~~g~~~qt-~~~l~~~~~~~lp~IvviNKi 181 (639)
.+..++||||||+.+ |...+..++..+|++|+|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 566778899999999999996 55655444 467777777899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEeccccc---CCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 182 DRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKE---GWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 182 D~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~---g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
|+....... . +.+...-.....-.+|+...||.+ +. |+.++++.+.+++|.
T Consensus 209 Dl~~~~~~~----~----~~~~~~~~~~~~~~~~v~~~sa~~~~~~~--------------gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGTDA----M----EVLTGRVIPLTLGFIGVINRSQEDIIAKK--------------SIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSCCC----H----HHHTTSSSCCTTCEEECCCCCHHHHSSSC--------------CHHHHHHHHHHHHHT
T ss_pred ccCCcchHH----H----HHHhCCCccCCCCeEEEecCChhhhccCC--------------CHHHHHHHHHHHHhC
Confidence 986533211 1 111110000000113455556655 44 899999999988875
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=7.5e-15 Score=149.58 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=84.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
+..+|+++|++|+|||||+++|++.... ......+.|+......+.+++..++|||||||.+|......
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~-----------~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~ 103 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVV-----------RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQ 103 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCS-----------CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCc-----------ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHH
Confidence 3579999999999999999999976321 12233566777777888899999999999999988543333
Q ss_pred HHh---------hccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CCcEEEEcCCCCCC
Q 006610 139 VVG---------MVEGAILVVDAGE-GPLAQTKFVLAKALKY-G----LRPILLLNKVDRPA 185 (639)
Q Consensus 139 ~l~---------~aD~allVVDa~~-g~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~~ 185 (639)
+++ .+|++|+|+|... ........+++.+.+. + .|+++|+||+|+..
T Consensus 104 ~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 104 ALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 332 7899999988654 3444455666666553 2 38899999999853
No 175
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.56 E-value=7.1e-15 Score=155.67 Aligned_cols=172 Identities=19% Similarity=0.112 Sum_probs=102.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcc---------------cccccccccc----ccceeEeeee-------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHE---------------RAMDSISLER----ERGITIASKV------- 111 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~---------------~v~D~~~~e~----ergiTi~~~~------- 111 (639)
.+...|+++|++|+|||||+++|+.......... ...|....+. .+++ +....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~-i~~~~~~~~l~g 132 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAF-IRPVPSSGHLGG 132 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEE-EEEECC-----C
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCce-eecCccccccch
Confidence 3567899999999999999999986421000000 0111111110 1111 11000
Q ss_pred ---------EEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 112 ---------TGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 112 ---------~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
..+.|+++.++||||||+.++... ....+|++|+|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 012267899999999999887654 4689999999999976643222111 123578999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 183 ~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+.+ ...+....+++.+.+..++.....+..|++++||++|. |++.|+++|.++++
T Consensus 206 l~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~--------------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 206 GDN--HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKR--------------GIDEIWHAIIDFKT 260 (341)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB--------------SHHHHHHHHHHHHH
T ss_pred CCC--hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCC--------------CHHHHHHHHHHHHH
Confidence 854 22333334444444433332111123478999999998 99999999987664
No 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=4.5e-15 Score=166.63 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeE----EE----eecCceEEEEeCCCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVT----GI----SWRENELNMVDTPGHA 130 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~----~~----~~~~~~i~iIDTPGh~ 130 (639)
+..+|+++|.+|+|||||+++|+......... ...|.++..... .+ ...+..++||||||+.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~----------~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKES----------QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC---------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------CccceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence 45799999999999999999999763211111 111222221100 11 1236789999999999
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcC--CCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG--LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~--lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~ 208 (639)
.|.......++.+|++|+|+|++.. .....++..+.+++ .|+|+|+||+|+....... .+++.+.+..++
T Consensus 110 ~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-- 181 (535)
T 3dpu_A 110 IMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE----QKKINERFPAIE-- 181 (535)
T ss_dssp TTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC----HHHHHHHCGGGT--
T ss_pred HHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC----HHHHHHHHHhcC--
Confidence 9988888889999999999998764 45566777777765 9999999999986533211 122333433333
Q ss_pred CccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCCCC
Q 006610 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (639)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p~ 256 (639)
+|++++||++|. |+++|+++|.+.+....
T Consensus 182 -----~~~~~vSA~~g~--------------gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 182 -----NRFHRISCKNGD--------------GVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -----TCEEECCC-------------------CTTHHHHHHHHHTCTT
T ss_pred -----CceEEEecCccc--------------CHHHHHHHHHHHHhccc
Confidence 479999999998 99999999998876543
No 177
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.55 E-value=2.2e-14 Score=138.92 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=97.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCC-chHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHAD-FGGEV 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~d-F~~ev 136 (639)
..+|+++|.+|+|||||+++|++...... ......|.+.... .+.+++ ..+.+|||+|... +....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~~~~~l~~~Dt~~~~~~~~~~~ 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMD---------SDXEVLGEDTYER--TLMVDGESATIILLDMWENKGENEWLH 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-------------GGGCTTEEEE--EEEETTEEEEEEEECCCCC----CTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcC---------ccccccceeEEEE--EEEECCeEEEEEEEEeccCcchhhhHH
Confidence 57899999999999999999997532100 0000112222222 233444 4678999999765 22233
Q ss_pred HHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
..+++.+|++++|+|.++....+. ..++..+.. .++|+|+|.||+|+...+..... +...+....
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~----~~~~~a~~~------ 144 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVS----EGRAXAVVF------ 144 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHH----HHHHHHHHT------
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHH----HHHHHHHHh------
Confidence 456788999999999876433222 334444433 37899999999998532111111 111111222
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++++||++|. |++++|+.|.+.+
T Consensus 145 -~~~~~e~SA~~g~--------------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 -DXKFIETSAAVQH--------------NVKELFEGIVRQV 170 (192)
T ss_dssp -TCEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred -CCceEEeccccCC--------------CHHHHHHHHHHHH
Confidence 2468999999998 9999999998765
No 178
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=1.8e-14 Score=140.00 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=106.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~ev 136 (639)
...+|+|+|+.|+|||||+++|++..... +....+++......+.+++ ..+.||||||+..|....
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~ 71 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNL------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC------------CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 35789999999999999999999763211 1111222222333444554 567899999999887767
Q ss_pred HHHHhhccEEEEEEeCCCCCchhH-HHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccc
Q 006610 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (639)
Q Consensus 137 ~~~l~~aD~allVVDa~~g~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~ 212 (639)
..+++.+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+........ ++...+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~------- 140 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT----DEARAFAEKN------- 140 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH----HHHHHHHHHT-------
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH----HHHHHHHHHc-------
Confidence 778889999999999887544333 334444433 3678999999999854221111 1222333332
Q ss_pred cccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++++.+||+++. |++++++.|.+.+.
T Consensus 141 ~~~~~d~Sal~~~--------------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 141 NLSFIETSALDST--------------NVEEAFKNILTEIY 167 (199)
T ss_dssp TCEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 2568889999998 99999999887653
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=6.8e-14 Score=136.54 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=105.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc-----
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF----- 132 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF----- 132 (639)
....+|+|+|++|+|||||+++|++.... .......|.+.... .+.+.+ .+.++||||+.++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~----------~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~ 90 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSL----------ARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEE 90 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-----------------------CCEE--EEEEET-TEEEEECCCCC------C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc----------ccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHH
Confidence 34578999999999999999999754210 01112335444332 233334 7899999998642
Q ss_pred -----hHHHHHHH---hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Q 006610 133 -----GGEVERVV---GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (639)
Q Consensus 133 -----~~ev~~~l---~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~ 204 (639)
...+..++ +.+|++++|+|+..+.......++..+...++|.+++.||+|+.. ..........+..++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s--~~~~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA--SGARKAQLNMVREAVLA 168 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC--HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC--chhHHHHHHHHHHHHHh
Confidence 22223333 578999999999888766666677777788999999999999853 22112223344444443
Q ss_pred cCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.+ ..++++++||+++. |++++++.|.+.++.
T Consensus 169 ~~-----~~~~~~~~Sal~~~--------------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FN-----GDVQVETFSSLKKQ--------------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp GC-----SCEEEEECBTTTTB--------------SHHHHHHHHHHHHC-
T ss_pred cC-----CCCceEEEeecCCC--------------CHHHHHHHHHHHHhh
Confidence 32 13568999999998 999999999887643
No 180
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.53 E-value=6.9e-14 Score=145.80 Aligned_cols=163 Identities=16% Similarity=0.200 Sum_probs=106.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchH---HHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---EVER 138 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~---ev~~ 138 (639)
+|+++|..|+|||||+.++...... ......+.|+......+. ...+++||||||+.+|.. ....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-----------~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~ 68 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-----------LDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSER 68 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-----------GGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-----------CccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhh
Confidence 4899999999999999876543110 000112344444444442 347899999999999963 4678
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHHHH----HHH--cCCCcEEEEcCCCCCCCCHH--HHHHHHHHHHHHHHhcCCCCc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVLAK----ALK--YGLRPILLLNKVDRPAVSEE--RCDEVESLVFDLFANLGATDE 210 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l~~----~~~--~~lp~IvviNKiD~~~~~~~--~~~~v~~~i~~l~~~~g~~~~ 210 (639)
+++.++++|+|+|+++. .......|.. +.+ .++|+++|+||+|+...+.. ...++..+..+-+.+.+. +
T Consensus 69 yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~--~ 145 (331)
T 3r7w_B 69 LFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL--D 145 (331)
T ss_dssp HHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC--S
T ss_pred hccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc--c
Confidence 99999999999999887 4455555433 222 37899999999999643210 012233222222222211 1
Q ss_pred cccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
...++++.+||++ . ++.+.|..|++.+.+
T Consensus 146 ~~~i~f~eTSAkd-~--------------nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 146 GVQVSFYLTSIFD-H--------------SIYEAFSRIVQKLIP 174 (331)
T ss_dssp CCCEEEECCCSSS-S--------------HHHHHHHHHHTTSST
T ss_pred ccCceEEEeccCC-C--------------cHHHHHHHHHHHHHh
Confidence 2467899999986 4 799999988877653
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.51 E-value=1e-13 Score=141.78 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=82.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch---HHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG---GEV 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~---~ev 136 (639)
..+|+++|++|+|||||+++|++.... ......+.|.......+.+++..++||||||+.+|. ...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~-----------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~ 107 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVV-----------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMA 107 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS-----------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc-----------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHH
Confidence 579999999999999999999975321 111223555555556677888999999999998764 222
Q ss_pred HHHH------hhccEEEEEEeCCC-CCchhHHHHHHHHHHc-C----CCcEEEEcCCCCCC
Q 006610 137 ERVV------GMVEGAILVVDAGE-GPLAQTKFVLAKALKY-G----LRPILLLNKVDRPA 185 (639)
Q Consensus 137 ~~~l------~~aD~allVVDa~~-g~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~~ 185 (639)
...+ +.+|++|+|+|+.. ........+++.+.+. + .|+++|+||+|+..
T Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 108 LNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp HHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2222 26899999988754 3445555666666543 3 58999999999854
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.50 E-value=9.6e-14 Score=134.13 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=106.4
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCchHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~~e 135 (639)
+...+|+|+|+.|+|||||+++|++..... .....++.......+.+++ ..+.+|||||+..|...
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~------------~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~ 94 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL------------ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC------------CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 346799999999999999999999763211 1112233333334455555 45667999999998877
Q ss_pred HHHHHhhccEEEEEEeCCCCCchh-HHHHHHHHHH---cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcc
Q 006610 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (639)
Q Consensus 136 v~~~l~~aD~allVVDa~~g~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~ 211 (639)
+...++.+|++++|+|..+....+ ...++..+.. .+.|+++++||+|+........ +....+....
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~------ 164 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT----DEARAFAEKN------ 164 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH----HHHHHHHHHT------
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH----HHHHHHHHHc------
Confidence 788888999999999987653322 2234444433 3678899999999854221111 1222333322
Q ss_pred ccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++++.+||+++. +++++++.|.+.+
T Consensus 165 -~~~~ld~Sald~~--------------~v~~l~~~l~~~i 190 (191)
T 1oix_A 165 -GLSFIETSALDST--------------NVEAAFQTILTEI 190 (191)
T ss_dssp -TCEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC--------------CHHHHHHHHHHHh
Confidence 2468889999998 9999999987653
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.49 E-value=1.2e-13 Score=159.31 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=82.4
Q ss_pred ceEEEEeCCCCCC---chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHH-HHHHcCCCcEEEEcCCCCCCCC---HH--
Q 006610 119 NELNMVDTPGHAD---FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLA-KALKYGLRPILLLNKVDRPAVS---EE-- 189 (639)
Q Consensus 119 ~~i~iIDTPGh~d---F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~-~~~~~~lp~IvviNKiD~~~~~---~~-- 189 (639)
..++||||||+.+ +...+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+.... ++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 5799999999765 4556678899999999999999888777776664 4556788999999999985321 11
Q ss_pred -HHHHHHHHHHHH----HHhc-CCCC-ccccccEEecccc--------------cCCCCCcccCCCcccccchHHHHHHH
Q 006610 190 -RCDEVESLVFDL----FANL-GATD-EQLDFPVLYASAK--------------EGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 190 -~~~~v~~~i~~l----~~~~-g~~~-~~~~~Pvi~~SA~--------------~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
.+.++.+.+.+. +... +... .....+++++||+ +|. |+++|++.|
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~--------------Gi~~L~~~L 319 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT--------------GFPKFMDSL 319 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS--------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc--------------CHHHHHHHH
Confidence 222222333222 2221 1000 0123579999999 555 999999998
Q ss_pred HhhCC
Q 006610 249 IRHVP 253 (639)
Q Consensus 249 ~~~lP 253 (639)
.+.+.
T Consensus 320 ~~~l~ 324 (695)
T 2j69_A 320 NTFLT 324 (695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=139.87 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=57.9
Q ss_pred hccEEEEEEeCCCC---CchhHHHHHHHHH----HcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccc
Q 006610 142 MVEGAILVVDAGEG---PLAQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (639)
Q Consensus 142 ~aD~allVVDa~~g---~~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~ 214 (639)
.+|++|+|+|+++. .......++..+. ..++|+++|+||+|+.. ... + ++..++.... ..+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~--~~~---v-~~~~~~~~~~------~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV--ERY---I-RDAHTFALSK------KNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC--HHH---H-HHHHHHHHTS------SSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc--cHH---H-HHHHHHHHhc------CCC
Confidence 58999999999875 2233334444443 34799999999999843 211 2 3343443321 135
Q ss_pred cEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++++||++|. |+++++++|.+.+
T Consensus 230 ~~~e~SAk~g~--------------gv~elf~~l~~~l 253 (255)
T 3c5h_A 230 QVVETSARSNV--------------NVDLAFSTLVQLI 253 (255)
T ss_dssp CEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred eEEEEECCCCC--------------CHHHHHHHHHHHh
Confidence 79999999998 9999999998754
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.45 E-value=9.4e-14 Score=133.56 Aligned_cols=113 Identities=20% Similarity=0.295 Sum_probs=76.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...+|+++|+.|+|||||+++|+....... + .....+++ ..+.+..++||||||+.+|...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~-----~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~~~~ 110 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V-----VSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYKLSD 110 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------CCCCTTCSEEEETTCCBSSCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcc----c-----ccCCCcee-------eeecCCeEEEEECCCCchHHHHHHH
Confidence 457999999999999999999997632110 0 00111111 2236788999999999998777777
Q ss_pred HHhh----ccEEEEEEeCCCCCc--hhHHHHHHHHHH-------cCCCcEEEEcCCCCCCCC
Q 006610 139 VVGM----VEGAILVVDAGEGPL--AQTKFVLAKALK-------YGLRPILLLNKVDRPAVS 187 (639)
Q Consensus 139 ~l~~----aD~allVVDa~~g~~--~qt~~~l~~~~~-------~~lp~IvviNKiD~~~~~ 187 (639)
++.. +|++|+|+|+..... .....++..+.. .++|+++|+||+|+....
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 7765 899999999972221 222233333322 389999999999996543
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=5.7e-14 Score=151.43 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=46.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEE---------------------eec---
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI---------------------SWR--- 117 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~---------------------~~~--- 117 (639)
+|+|+|++|+|||||+++|++.. . ......+.|+....... .++
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~-----------~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~ 69 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-V-----------EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLA 69 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-C-----------cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcc
Confidence 79999999999999999999763 1 11112233333222211 112
Q ss_pred CceEEEEeCCCCCCchH-------HHHHHHhhccEEEEEEeCCCC
Q 006610 118 ENELNMVDTPGHADFGG-------EVERVVGMVEGAILVVDAGEG 155 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~-------ev~~~l~~aD~allVVDa~~g 155 (639)
...++||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 35799999999865321 112346889999999999875
No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.42 E-value=6.6e-13 Score=148.98 Aligned_cols=142 Identities=18% Similarity=0.143 Sum_probs=94.5
Q ss_pred CCCCCccEEEEEcCCCCCHHHHHHHHHHHcCC---CC-Cccc-----cccccccccccceeE------------------
Q 006610 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGA---DI-PHER-----AMDSISLERERGITI------------------ 107 (639)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~---~~-~~~~-----v~D~~~~e~ergiTi------------------ 107 (639)
......++|+|+|+.|+|||||+|+|++.... .. ...+ +......+...|.++
T Consensus 60 ~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 60 ADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CC
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 33456789999999999999999999987532 11 0000 000000000001100
Q ss_pred eeeeEEEeecC---ceEEEEeCCCCCC-----------chHHHHHHHhhccEEEEEEeCCC-CCchhHHHHHHHHHHcCC
Q 006610 108 ASKVTGISWRE---NELNMVDTPGHAD-----------FGGEVERVVGMVEGAILVVDAGE-GPLAQTKFVLAKALKYGL 172 (639)
Q Consensus 108 ~~~~~~~~~~~---~~i~iIDTPGh~d-----------F~~ev~~~l~~aD~allVVDa~~-g~~~qt~~~l~~~~~~~l 172 (639)
......+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +...++..+++.+...+.
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~ 219 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHED 219 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGG
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCC
Confidence 01112222322 4799999999876 77788889999999999999987 578888888888888889
Q ss_pred CcEEEEcCCCCCCCCHHHHHHHHHHH
Q 006610 173 RPILLLNKVDRPAVSEERCDEVESLV 198 (639)
Q Consensus 173 p~IvviNKiD~~~~~~~~~~~v~~~i 198 (639)
|+++|+||+|+.. ...+.++.+.+
T Consensus 220 pvilVlNK~Dl~~--~~el~~~~~~l 243 (550)
T 2qpt_A 220 KIRVVLNKADMVE--TQQLMRVYGAL 243 (550)
T ss_dssp GEEEEEECGGGSC--HHHHHHHHHHH
T ss_pred CEEEEEECCCccC--HHHHHHHHHHh
Confidence 9999999999853 44444444444
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.41 E-value=3.2e-13 Score=143.64 Aligned_cols=170 Identities=17% Similarity=0.127 Sum_probs=100.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc------cc---------------------cccccccc--------c--
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH------ER---------------------AMDSISLE--------R-- 101 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~------~~---------------------v~D~~~~e--------~-- 101 (639)
..++|+|+|.+++|||||+++|++........ .. +.++.... +
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 35689999999999999999998764321000 00 01111000 0
Q ss_pred --ccceeEeeeeEEEeec-CceEEEEeCCCCCC-------------chHHHHHHHhhcc-EEEEEEeCCCCCchhHH-HH
Q 006610 102 --ERGITIASKVTGISWR-ENELNMVDTPGHAD-------------FGGEVERVVGMVE-GAILVVDAGEGPLAQTK-FV 163 (639)
Q Consensus 102 --ergiTi~~~~~~~~~~-~~~i~iIDTPGh~d-------------F~~ev~~~l~~aD-~allVVDa~~g~~~qt~-~~ 163 (639)
..|+........+... ...++||||||..+ +...+..+++.++ .+|+|+|+..+...+.. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0233332222333333 57899999999642 3445666665554 55667788777766655 36
Q ss_pred HHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHH
Q 006610 164 LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (639)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~ 243 (639)
++.+...+.|+|+|+||+|+...... .. +++.........-.++++++||++|. |+++
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~-------~~~~~~~~~l~~~~~~v~~~SA~~~~--------------~i~~ 247 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDEGTD-AR-------DVLENKLLPLRRGYIGVVNRSQKDID--------------GKKD 247 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCTTCC-CH-------HHHTTCSSCCTTCEEECCCCCHHHHH--------------TTCC
T ss_pred HHHhCcCCCceEEEeccccccCcchh-HH-------HHHhCCcccccCCceEEEeCCccccc--------------cccc
Confidence 77777778999999999998643221 01 11111000000011478999999998 6666
Q ss_pred HHHHHHh
Q 006610 244 LLDAIIR 250 (639)
Q Consensus 244 Lld~I~~ 250 (639)
|++++.+
T Consensus 248 l~~~l~~ 254 (353)
T 2x2e_A 248 ITAALAA 254 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=1.9e-12 Score=139.98 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=105.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-ceEEEEeCCCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------- 131 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-~~i~iIDTPGh~d------- 131 (639)
...|+|+|++|+|||||+++|+.... ........|+......+.+.+ ..++++||||+.+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~------------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP------------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC------------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc------------cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh
Confidence 45699999999999999999975411 111222344444555566665 7899999999854
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH-----cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
+.....+.+..+|.+|.|+|+......+...++++... ...|.|+++||+|.... . ..+.+.+.+...+
T Consensus 225 L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~----~~~~l~~~l~~~g 298 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--E----AVKALADALAREG 298 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H----HHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--H----HHHHHHHHHHhcC
Confidence 33344556677999999999862222233333333332 36799999999998642 2 2333434443322
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++++++||+++. |+++|+++|.+.+..
T Consensus 299 -------~~vi~iSA~~g~--------------gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 299 -------LAVLPVSALTGA--------------GLPALKEALHALVRS 325 (416)
T ss_dssp -------SCEEECCTTTCT--------------THHHHHHHHHHHHHT
T ss_pred -------CeEEEEECCCcc--------------CHHHHHHHHHHHHHh
Confidence 469999999998 999999999887754
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.39 E-value=2e-12 Score=137.23 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=68.0
Q ss_pred ecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHH
Q 006610 116 WRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~ 195 (639)
+.++.+.|+||||..+.. ......+|.+++|+|+..+...+. +.. .-...|.++|+||+|+.. ........
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~---i~~-~il~~~~ivVlNK~Dl~~--~~~~~~~~ 234 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG---IKR-GIIEMADLVAVTKSDGDL--IVPARRIQ 234 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG--HHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH---hHH-HHHhcCCEEEEeeecCCC--chhHHHHH
Confidence 467899999999965332 334678999999999987643221 111 124678999999999842 22212222
Q ss_pred HHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 196 ~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.++...+............|++++||++|. |+++|+++|.++++
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~--------------Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGE--------------GISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCC--------------CHHHHHHHHHHHHH
Confidence 333222222111001113578999999999 99999999987653
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.38 E-value=2.4e-13 Score=133.97 Aligned_cols=165 Identities=13% Similarity=0.192 Sum_probs=99.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc-------ccccccccccceeEee-ee---EEE----------eec
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-------MDSISLERERGITIAS-KV---TGI----------SWR 117 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v-------~D~~~~e~ergiTi~~-~~---~~~----------~~~ 117 (639)
+.++|+|+|++|+|||||+++|+...+.......+ .|....+ ..|+++.. .. ..+ .+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 46899999999999999999999875422110000 1111111 11333111 11 011 345
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHH
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESL 197 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~ 197 (639)
+..+.||||||+.+.... .-...+.+++|+|+..+... .+..+...+.|.++|+||+|+.........++.+
T Consensus 108 ~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~- 179 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKMKA- 179 (221)
T ss_dssp TCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHH-
T ss_pred CCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHHHH-
Confidence 678999999995221110 00246889999999877432 2333445678999999999984210001222222
Q ss_pred HHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 198 i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.+..++. ..|++++||++|. |+++|+++|.+.+..
T Consensus 180 ---~~~~~~~-----~~~i~~~Sa~~g~--------------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 180 ---DAKLINP-----RAKIIEMDLKTGK--------------GFEEWIDFLRGILNV 214 (221)
T ss_dssp ---HHHHHCT-----TSEEEECBTTTTB--------------THHHHHHHHHHHHC-
T ss_pred ---HHHHhCC-----CCeEEEeecCCCC--------------CHHHHHHHHHHHHHH
Confidence 2332221 2579999999999 999999999887643
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.32 E-value=1.3e-12 Score=132.32 Aligned_cols=172 Identities=22% Similarity=0.156 Sum_probs=100.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccc--------------------cceeEeeeeE------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERE--------------------RGITIASKVT------ 112 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~e--------------------rgiTi~~~~~------ 112 (639)
+...+++.|..|+|||||+++|..... ......+.|.++.... ++........
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 457899999999999999999986543 2222222222211000 0000000000
Q ss_pred ---------EE-ee-cCceEEEEeCCCCCCchHH------HHHHHhhccEEEEEEeCCCCCchhHHH-----HHHHHHHc
Q 006610 113 ---------GI-SW-RENELNMVDTPGHADFGGE------VERVVGMVEGAILVVDAGEGPLAQTKF-----VLAKALKY 170 (639)
Q Consensus 113 ---------~~-~~-~~~~i~iIDTPGh~dF~~e------v~~~l~~aD~allVVDa~~g~~~qt~~-----~l~~~~~~ 170 (639)
.+ .+ .++.+.||||||+.++... +..++.. +.+|+|+|+.......... .+......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 01 2368999999999776322 2234455 8889999987665544332 11233455
Q ss_pred CCCcEEEEcCCCCCCCCHHHHHHHHH---HHHHH---------------------HHhcCCCCccccccEEecccccCCC
Q 006610 171 GLRPILLLNKVDRPAVSEERCDEVES---LVFDL---------------------FANLGATDEQLDFPVLYASAKEGWA 226 (639)
Q Consensus 171 ~lp~IvviNKiD~~~~~~~~~~~v~~---~i~~l---------------------~~~~g~~~~~~~~Pvi~~SA~~g~~ 226 (639)
++|.++|+||+|+... ....++.+ +...+ +..++. ..+++++||++|.
T Consensus 171 ~~p~~iv~NK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~SA~~~~- 242 (262)
T 1yrb_A 171 GATTIPALNKVDLLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-----PVRVLYLSAKTRE- 242 (262)
T ss_dssp TSCEEEEECCGGGCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-----CCCCEECCTTTCT-
T ss_pred CCCeEEEEeccccccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-----cccceEEEecCcc-
Confidence 8999999999998542 21222221 11111 122221 1368999999999
Q ss_pred CCcccCCCcccccchHHHHHHHHhhCC
Q 006610 227 SSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 227 ~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
|+++|+++|.+.++
T Consensus 243 -------------gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 243 -------------GFEDLETLAYEHYC 256 (262)
T ss_dssp -------------THHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHhc
Confidence 99999999987664
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.29 E-value=5.6e-12 Score=134.27 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=65.1
Q ss_pred CceEEEEeCCCCCCc-------------hHHHHHHHhhccEEEEEEeCCC-CCc-hhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 118 ENELNMVDTPGHADF-------------GGEVERVVGMVEGAILVVDAGE-GPL-AQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF-------------~~ev~~~l~~aD~allVVDa~~-g~~-~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
...++||||||+.++ ...+..+++.+|++|+|+|+.. ... .....+++.+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 568999999998887 6677888999999999998643 222 2334455555566889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCC
Q 006610 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGW 225 (639)
Q Consensus 183 ~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~ 225 (639)
+....... .+.+... ...+..+++.+|++.+.
T Consensus 215 l~~~~~~~--------~~~~~~~---~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 215 LMDKGTDA--------VEILEGR---SFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp GCCTTCCS--------HHHHTTS---SSCCSSCCEEECCCCHH
T ss_pred cCCCcccH--------HHHHcCc---cccccCCeEEEEECChH
Confidence 86432211 1112211 12234678888888765
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=1.4e-11 Score=141.53 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCC------CC-c--------------------ccccccccc------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD------IP-H--------------------ERAMDSISL------------ 99 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~------~~-~--------------------~~v~D~~~~------------ 99 (639)
..+.|+|+|..++|||||+|+|++..... .. . ..+.|....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 46799999999999999999999864310 00 0 000111110
Q ss_pred ccccceeEeeeeEEEeec-CceEEEEeCCCCCC-------------chHHHHHHH-hhccEEEEEEeCCCCCchhHH-HH
Q 006610 100 ERERGITIASKVTGISWR-ENELNMVDTPGHAD-------------FGGEVERVV-GMVEGAILVVDAGEGPLAQTK-FV 163 (639)
Q Consensus 100 e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~d-------------F~~ev~~~l-~~aD~allVVDa~~g~~~qt~-~~ 163 (639)
....+++-......+.+. ...+.||||||... +...+..++ ..+|.+|+|+|+..+...+.. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 001233322223333333 45799999999654 223344444 468999999999998877776 68
Q ss_pred HHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHH
Q 006610 164 LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (639)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~ 243 (639)
++.+...+.|+|+|+||+|+....... . ++....-.....-..+++++||++|. |+++
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~~-~-------~il~~~~~~l~lg~~~VV~iSA~~G~--------------Gvde 267 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTDA-R-------DVLENKLLPLRRGYIGVVNRSQKDID--------------GKKD 267 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCCS-H-------HHHTTCSSCCSSCEEECCCCCCEESS--------------SSEE
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchhh-H-------HHHHHHhhhhhccCCceEEecccccc--------------cchh
Confidence 888888899999999999996432211 1 11110000000012478999999998 7777
Q ss_pred HHHHHHh
Q 006610 244 LLDAIIR 250 (639)
Q Consensus 244 Lld~I~~ 250 (639)
|+++|.+
T Consensus 268 L~eaI~~ 274 (772)
T 3zvr_A 268 ITAALAA 274 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777765
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.25 E-value=6.6e-11 Score=126.05 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC-------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d------- 131 (639)
..-+|+|+|.+|+|||||+|+|++. ........+.|+......+.+.+.++.|+||||..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~------------~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~ 138 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGT------------ESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG 138 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSB------------CCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC------------CCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH
Confidence 3568999999999999999999875 223345568899999999999999999999999753
Q ss_pred chHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc-----CCCcEEEEcCCCCCC
Q 006610 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-----GLRPILLLNKVDRPA 185 (639)
Q Consensus 132 F~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~ 185 (639)
....+...++.||.+++|+|+.++. .+...+...+... ..|.++++||+|+.+
T Consensus 139 ~g~~~l~~i~~ad~il~vvD~~~p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 139 RGKQVIAVARTCNLLFIILDVNKPL-HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSHH-HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred HHHHHHHHHHhcCccccccccCccH-HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 3355677889999999999998743 2223333334433 458899999999743
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=126.11 Aligned_cols=164 Identities=17% Similarity=0.190 Sum_probs=82.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe--ec--CceEEEEeCCCCCCchH-
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS--WR--ENELNMVDTPGHADFGG- 134 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~--~~--~~~i~iIDTPGh~dF~~- 134 (639)
..+|+|+|+.|+|||||++.|++........... .... .-|+......+. .. ...+++|||||+.++..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~----~~~~--~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~ 104 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP----SHRI--KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 104 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC----C-------CCEEEEEECC------CEEEEEEECC--------
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc----ccCC--ccceeeeeEEEEEecCCcccceeeeechhhhhhccc
Confidence 4689999999999999999998753311100000 0000 011111111111 11 23789999999877531
Q ss_pred -----HH--------HHHH-----------hh--ccEEEEEEeCC-CCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCC
Q 006610 135 -----EV--------ERVV-----------GM--VEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVS 187 (639)
Q Consensus 135 -----ev--------~~~l-----------~~--aD~allVVDa~-~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~ 187 (639)
.+ ..++ +. ++.+|++++++ .+..+....+++.+.. ++|+|+|+||+|+. +
T Consensus 105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll--~ 181 (418)
T 2qag_C 105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL--T 181 (418)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSS--C
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCc--c
Confidence 11 1111 11 34466666676 6888888777777754 89999999999984 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 188 EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 188 ~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
...+....+++.+.+...+ ++++.+|++++. ++..++..+...+|
T Consensus 182 ~~ev~~~k~~i~~~~~~~~-------i~~~~~sa~~~~--------------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHK-------IKIYEFPETDDE--------------EENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CCCCCCC-------------------------------CC
T ss_pred HHHHHHHHHHHHHHHHHcC-------CeEEeCCCCCCc--------------CHHHHHHHHHhhCC
Confidence 4444545566666665544 458889998887 77777777765554
No 197
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.15 E-value=4.4e-11 Score=132.09 Aligned_cols=169 Identities=17% Similarity=0.110 Sum_probs=97.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccc-----------cccccccceeEeeeeE-------------E
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDS-----------ISLERERGITIASKVT-------------G 113 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~-----------~~~e~ergiTi~~~~~-------------~ 113 (639)
.+.++|+|+|++|+|||||+++|+...........+.|. .......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999654211111111111 0111223444333111 1
Q ss_pred EeecCceEEEEeCCCCCC----chHHHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCCC
Q 006610 114 ISWRENELNMVDTPGHAD----FGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAV 186 (639)
Q Consensus 114 ~~~~~~~i~iIDTPGh~d----F~~ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~ 186 (639)
+.|.++.+.||||||... +..+...... .+|.+++|+||..|.. ....++...+ .+|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 234788999999999763 3444433333 6899999999998753 3333333333 2785 89999999863
Q ss_pred CHHHHHHHHHHHHHHHHhcCCC-----------CccccccEEecccccCCCCCcccCCCcccccc-hHHHHHHHHhh
Q 006610 187 SEERCDEVESLVFDLFANLGAT-----------DEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRH 251 (639)
Q Consensus 187 ~~~~~~~v~~~i~~l~~~~g~~-----------~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-l~~Lld~I~~~ 251 (639)
.......+. ..++.+ +-....|..++|+..|. | +..|++++.+.
T Consensus 255 ~~g~~l~~~-------~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~--------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALSAV-------AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM--------------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHHHH-------HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT--------------TTTTTTHHHHTTT
T ss_pred chHHHHHHH-------HHhCCCeEEeccccchhhhhccCcceeeehhcCC--------------CcHHHHHHHHHHH
Confidence 222211111 111110 00011355677888887 7 89999999765
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=5e-10 Score=118.63 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-----------------ceEEE
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELNM 123 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----------------~~i~i 123 (639)
.+|+|+|.+|+|||||+++|++... ......+.|+......+.+.+ ..++|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~------------~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~l 70 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI------------EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEF 70 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC------------cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEE
Confidence 4799999999999999999997521 111223444444443444443 57999
Q ss_pred EeCCCCCCchH-------HHHHHHhhccEEEEEEeCCC
Q 006610 124 VDTPGHADFGG-------EVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 124 IDTPGh~dF~~-------ev~~~l~~aD~allVVDa~~ 154 (639)
|||||+.++.. .....++.+|++++|+|+.+
T Consensus 71 vDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 71 VDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 99999988642 34567899999999999976
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.12 E-value=2.9e-10 Score=118.08 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=82.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH-cCCCCCccccccccccccccceeEeeeeEEEee--cCceEEEEeCCCC-------
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ-CGADIPHERAMDSISLERERGITIASKVTGISW--RENELNMVDTPGH------- 129 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~-~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~--~~~~i~iIDTPGh------- 129 (639)
..+|+|+|+.|+|||||+++|+.. ...... ..+ +..+.. ..+.+......+.. ....+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~-~g~~~~--~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISG-AAEKIE--RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-ccc-CCcccC--CcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 478999999999999999998754 111110 000 000000 01111111111111 1357899999998
Q ss_pred CCchHHHH-------HHHhhcc-------------EEEEEEeCCC-CCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCH
Q 006610 130 ADFGGEVE-------RVVGMVE-------------GAILVVDAGE-GPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (639)
Q Consensus 130 ~dF~~ev~-------~~l~~aD-------------~allVVDa~~-g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (639)
..|...+. .+++.+. .+|++++.+. +..+....+++.+. .+.++++|+||.|+.. .
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~--~ 170 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLT--L 170 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSC--H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCC--H
Confidence 44433333 4444333 3566666544 57777766666553 4678999999999853 3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 189 ~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.......+++.+.+...+ ++++++||++| +++++++.+.+.+
T Consensus 171 ~e~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~---------------~v~e~f~~l~~~i 212 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHN-------IKIYHLPDAES---------------DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHHHHTT-------CCCCCCC------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-------CeEEecCCccc---------------cccHHHHHHHHHh
Confidence 232333455556555544 46899999988 4555665555544
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.10 E-value=1.1e-09 Score=116.50 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEe---------------------ecCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS---------------------WREN 119 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~---------------------~~~~ 119 (639)
.+|+|+|.+|+|||||+++|++.... .....+.|+......+. +.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~------------v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 69 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL------------AANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPT 69 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT------------CSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc------------ccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence 46999999999999999999987310 00111122222222221 2346
Q ss_pred eEEEEeCCCCCCc-------hHHHHHHHhhccEEEEEEeCCC
Q 006610 120 ELNMVDTPGHADF-------GGEVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 120 ~i~iIDTPGh~dF-------~~ev~~~l~~aD~allVVDa~~ 154 (639)
.++||||||+.++ .......++.+|++++|+|+.+
T Consensus 70 ~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 70 HVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred eEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 7999999998765 3456678899999999999976
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=8.1e-11 Score=124.18 Aligned_cols=117 Identities=19% Similarity=0.189 Sum_probs=68.8
Q ss_pred eecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHH
Q 006610 115 SWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEV 194 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v 194 (639)
.+.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..++.++++||+|+... .......
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~~-~~~s~~~ 215 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGDG-ERRASAA 215 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCC-HHHHHHH
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccCc-hhHHHHH
Confidence 34688999999999765322 24578999999999865422110 00001 13477899999997432 1111222
Q ss_pred HHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 195 ~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
.+++...+..+......+..|++++||++|. |+++|++.|.++.+
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~--------------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGK--------------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 2333222222221001112468999999998 99999999887654
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.97 E-value=7.7e-10 Score=109.04 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=90.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccc-cc------cccccc--cceeEeeee-E------------EEee
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM-DS------ISLERE--RGITIASKV-T------------GISW 116 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~-D~------~~~e~e--rgiTi~~~~-~------------~~~~ 116 (639)
+.++|+|+|+.|+|||||+++|+..........++. |. ...+.. .-+.+.... . .+.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 468999999999999999999998754321111111 11 001000 011111000 0 0011
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHH
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVES 196 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~ 196 (639)
.+..+.++||+|...... ..-...+..+.|+|+..+...... .....+.|.++|+||+|+....... .+
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~~~~----~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAVGAD----IK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHHTCC----HH
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchhHHH----HH
Confidence 234799999999522100 001234567788886544322211 1222578999999999984310001 12
Q ss_pred HHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 197 ~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
++.+.+..++. ..|++++||++|. |+++|++.|.+.+
T Consensus 186 ~~~~~~~~~~~-----~~~~~~~Sa~~g~--------------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 186 KMENDAKRINP-----DAEVVLLSLKTME--------------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHCT-----TSEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----CCeEEEEEecCCC--------------CHHHHHHHHHHHH
Confidence 22233333221 2579999999999 9999999997654
No 203
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.96 E-value=7.2e-10 Score=116.37 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=93.4
Q ss_pred cceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCC-----------CCchhHHHHHHHHHH--
Q 006610 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE-----------GPLAQTKFVLAKALK-- 169 (639)
Q Consensus 103 rgiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~-----------g~~~qt~~~l~~~~~-- 169 (639)
+..|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.++ .-+.....+|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4445666677788889999999999999999999999999999999999862 123344556665544
Q ss_pred --cCCCcEEEEcCCCCCCCCH---------------HHHHHHHHHHHHHH------HhcCCCCc----------cccccE
Q 006610 170 --YGLRPILLLNKVDRPAVSE---------------ERCDEVESLVFDLF------ANLGATDE----------QLDFPV 216 (639)
Q Consensus 170 --~~lp~IvviNKiD~~~~~~---------------~~~~~v~~~i~~l~------~~~g~~~~----------~~~~Pv 216 (639)
.++|+|+|+||+|+..... ..+++..+-+.+.| ..+..... ...+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 3689999999999742100 01233444444445 33222111 124778
Q ss_pred EecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
.++||+... +++.+|+.+.+.+
T Consensus 305 h~TsA~dt~--------------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS--------------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH--------------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH--------------HHHHHHHHHHHHH
Confidence 999999988 8888888776543
No 204
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.90 E-value=1.7e-09 Score=113.09 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=95.1
Q ss_pred cceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCC-------CC----CchhHHHHHHHHHH--
Q 006610 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAG-------EG----PLAQTKFVLAKALK-- 169 (639)
Q Consensus 103 rgiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~-------~g----~~~qt~~~l~~~~~-- 169 (639)
+..|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.+ +. -+.....+|+.+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 444555666778888999999999999999999999999999999999754 21 12334455655543
Q ss_pred --cCCCcEEEEcCCCCCCCC----------------HHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCccc
Q 006610 170 --YGLRPILLLNKVDRPAVS----------------EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFT 231 (639)
Q Consensus 170 --~~lp~IvviNKiD~~~~~----------------~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~ 231 (639)
.++|+|+|+||+|+.... ....++..+-+.+.|..+... ....+.+.++||+++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~-~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD-SDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT-TTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc-ccCCcEEEEEEeecCH------
Confidence 368999999999974210 112234444455555554322 2335678899999998
Q ss_pred CCCcccccchHHHHHHHHhhC
Q 006610 232 KDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 232 ~~~~~~~~gl~~Lld~I~~~l 252 (639)
+++.+|+++.+.+
T Consensus 304 --------nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 --------NIRFVFAAVKDTI 316 (327)
T ss_dssp --------HHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHH
Confidence 9999998887654
No 205
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.88 E-value=1.7e-09 Score=114.48 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=95.4
Q ss_pred ceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-----------CchhHHHHHHHHHH---
Q 006610 104 GITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK--- 169 (639)
Q Consensus 104 giTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-----------~~~qt~~~l~~~~~--- 169 (639)
..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++- -+.....++..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455555667778899999999999999999999999999999999998762 23444556665554
Q ss_pred -cCCCcEEEEcCCCCCCCC---------------HHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCC
Q 006610 170 -YGLRPILLLNKVDRPAVS---------------EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD 233 (639)
Q Consensus 170 -~~lp~IvviNKiD~~~~~---------------~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~ 233 (639)
.++|+|+|+||+|+.... ....++..+-+...|..+........++++++||++|.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-------- 329 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-------- 329 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH--------
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch--------
Confidence 378999999999973100 01123333334344444432212235789999999998
Q ss_pred CcccccchHHHHHHHHhhC
Q 006610 234 PPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 234 ~~~~~~gl~~Lld~I~~~l 252 (639)
|+..+|+++.+.+
T Consensus 330 ------nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 ------NVQFVFDAVTDVI 342 (353)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHH
Confidence 9999999987654
No 206
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.85 E-value=4e-09 Score=103.09 Aligned_cols=85 Identities=16% Similarity=0.343 Sum_probs=70.8
Q ss_pred CCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe
Q 006610 259 LDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338 (639)
Q Consensus 259 ~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i 338 (639)
.++||++.|..++. +.|++..|||.+|++++||.|.+.+.+ ...+|++|+.++ .++++|.|||+|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~-------~~~~V~~I~~~~----~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK-------HNVEVLGILSDD----VETDTVAPGENLKI 69 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT-------EEEEEEEECSSS----SCBSEECTTSEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC-------CEEEEEEEEECC----EEeEEECCCCEEEE
Confidence 47899999999976 689999999999999999999998752 568999998775 48999999999988
Q ss_pred --cCCC--CCCcCCeeeecCCC
Q 006610 339 --AGMT--KPSIGHTVANTEVT 356 (639)
Q Consensus 339 --~gl~--~~~~Gdtl~~~~~~ 356 (639)
.|++ +++.||+||+++++
T Consensus 70 ~L~gi~~~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 70 RLKGIEEEEILPGFILCDPNNL 91 (204)
T ss_dssp EEEESSSSCCCTTCEEBCSSSC
T ss_pred EEcCCCHHHCccceEEECCCCC
Confidence 7774 68999999998754
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.80 E-value=2e-08 Score=108.39 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC--ceEEEEeCCCCCCch---
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG--- 133 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~--~~i~iIDTPGh~dF~--- 133 (639)
.+.+++|+|+.|+|||||++.|++...... .+ .....+.+.......+...+ ..++++|+||..+..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~---~~-----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~ 112 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGE---PA-----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKE 112 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCC---cC-----CCCCccceEeeEEEEeecCccccccchhhhhhhhhccccc
Confidence 456799999999999999999987621100 00 00011222221111112222 268999999976531
Q ss_pred -----------HHHHHHHhh---------------cc-EEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCC
Q 006610 134 -----------GEVERVVGM---------------VE-GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV 186 (639)
Q Consensus 134 -----------~ev~~~l~~---------------aD-~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~ 186 (639)
..+..++.. +| .+++|+|+..+......++++.+. .+.|+|+|+||+|..
T Consensus 113 ~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~L-- 189 (427)
T 2qag_B 113 DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAI-- 189 (427)
T ss_dssp HHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGS--
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhcc--
Confidence 122222221 12 366788899999888888887776 789999999999984
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCccccccEEeccc
Q 006610 187 SEERCDEVESLVFDLFANLGATDEQLDFPVLYASA 221 (639)
Q Consensus 187 ~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA 221 (639)
.+.......+.+.+.+... .++++++|.
T Consensus 190 t~~E~~~l~~~I~~~L~~~-------gi~I~~is~ 217 (427)
T 2qag_B 190 SKSELTKFKIKITSELVSN-------GVQIYQFPT 217 (427)
T ss_dssp CHHHHHHHHHHHHHHHBTT-------BCCCCCCC-
T ss_pred chHHHHHHHHHHHHHHHHc-------CCcEEecCC
Confidence 4544555555555433332 256777774
No 208
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.77 E-value=2.7e-09 Score=113.36 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=85.1
Q ss_pred eEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCC-----------CchhHHHHHHHHHH----c
Q 006610 106 TIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK----Y 170 (639)
Q Consensus 106 Ti~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g-----------~~~qt~~~l~~~~~----~ 170 (639)
|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++- -+.....+|..... .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 44445566778899999999999999999999999999999999998862 22344456665543 3
Q ss_pred CCCcEEEEcCCCCCCC----------------CHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCC
Q 006610 171 GLRPILLLNKVDRPAV----------------SEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDP 234 (639)
Q Consensus 171 ~lp~IvviNKiD~~~~----------------~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~ 234 (639)
++|+|+|+||+|+... .+...++..+-+.+.|..+........++++++||+++.
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~--------- 338 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE--------- 338 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH---------
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch---------
Confidence 6899999999997410 001123333333334444322111234678999999998
Q ss_pred cccccchHHHHHHHHhhC
Q 006610 235 PADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 235 ~~~~~gl~~Lld~I~~~l 252 (639)
|++.+|+++.+.+
T Consensus 339 -----nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 -----NIRLVFRDVKDTI 351 (362)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHH
Confidence 9999999887654
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.75 E-value=9.7e-08 Score=97.37 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccc--ccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-----
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMD--SISLERERGITIASKVTGISWRENELNMVDTPGHADFG----- 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D--~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~----- 133 (639)
.|++|+|+.|+|||||++.|++........-.+.+ .......+++........ -...++++|+||..+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~---~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG---VKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC---CcCCceEEechhhhhhcccHHH
Confidence 58999999999999999999987432211111100 000011112222111111 12368999999964311
Q ss_pred --------H-HHHHHH--------------hhccEEEEEEe-CCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHH
Q 006610 134 --------G-EVERVV--------------GMVEGAILVVD-AGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (639)
Q Consensus 134 --------~-ev~~~l--------------~~aD~allVVD-a~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (639)
. .....+ ..++.+++++| +.+|..+....+++.+.+. +++|+|+||+|.. ...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l--t~~ 156 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM--TLE 156 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS--CHH
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC--CHH
Confidence 0 111111 12477899999 5589999999999988877 9999999999984 455
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 006610 190 RCDEVESLVFDLFANLGA 207 (639)
Q Consensus 190 ~~~~v~~~i~~l~~~~g~ 207 (639)
......+.+.+.+...+.
T Consensus 157 e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 556666667666665543
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=1.4e-07 Score=101.63 Aligned_cols=165 Identities=14% Similarity=0.091 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeec-CceEEEEeCCCCCCchHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFGGEVERVV 140 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~-~~~i~iIDTPGh~dF~~ev~~~l 140 (639)
.++|+|+.|+|||||++.|++........-. .+..+..+ +++ .+... ...++++|+||...-...+..++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~-~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~~~~~~~L 141 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAK-TGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTNFPPDTYL 141 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCC-CCC----C-CCE-------EEECSSCTTEEEEECCCGGGSSCCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEE-ECCeecce-eEE-------eccccccCCeeehHhhcccchHHHHHHHH
Confidence 8999999999999999999874221111000 11111111 111 11111 23689999999642111122222
Q ss_pred -----hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC-------CCCHHHHHHHHHHHHHHH----Hh
Q 006610 141 -----GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-------AVSEERCDEVESLVFDLF----AN 204 (639)
Q Consensus 141 -----~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~-------~~~~~~~~~v~~~i~~l~----~~ 204 (639)
...|..++ +|... .+.|...+.+.+...+.|+++|+||.|.. +.|+....++.+.+.++. .+
T Consensus 142 ~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 142 EKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp HHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 23355554 77755 57777778888888899999999999963 233333344444454443 22
Q ss_pred cCCCCccccccEEeccc--ccCCCCCcccCCCcccccchHHHHHHHHhhCCCC
Q 006610 205 LGATDEQLDFPVLYASA--KEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (639)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA--~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~p 255 (639)
.|.+. -.++.+|+ ..+. |++.|.+.|.+++|.-
T Consensus 220 ~g~~~----~~iiliSsh~l~~~--------------~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 220 NGIAE----PPIFLLSNKNVCHY--------------DFPVLMDKLISDLPIY 254 (413)
T ss_dssp TTCSS----CCEEECCTTCTTST--------------THHHHHHHHHHHSCGG
T ss_pred cCCCC----CcEEEEecCcCCcc--------------CHHHHHHHHHHhCccc
Confidence 22211 24788999 5555 8999999999999753
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.61 E-value=4.7e-08 Score=104.53 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-----------------ceEE
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELN 122 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----------------~~i~ 122 (639)
..+|+|+|.+|+|||||+++|++... ......+.|+......+.+.+ ..++
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~ 89 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLN 89 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc------------cccCCCccccCceeEEEEECCccceeeccccCcccccccccE
Confidence 45799999999999999999986521 222334555555555554432 3599
Q ss_pred EEeCCCCCCchH-------HHHHHHhhccEEEEEEeCCC
Q 006610 123 MVDTPGHADFGG-------EVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 123 iIDTPGh~dF~~-------ev~~~l~~aD~allVVDa~~ 154 (639)
||||||+..+.. .+..+++.+|++++|+|+.+
T Consensus 90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 999999887554 56788999999999999974
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.58 E-value=1.5e-08 Score=110.13 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=69.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC----------CCCcccccccccc-ccccceeEeeee------------EEEe
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA----------DIPHERAMDSISL-ERERGITIASKV------------TGIS 115 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~----------~~~~~~v~D~~~~-e~ergiTi~~~~------------~~~~ 115 (639)
..++|+++|++|+||||++..|...... +.......+.... ....|+.+.... .--.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999875320 0000000000000 011122111110 0001
Q ss_pred ecCceEEEEeCCCCCCchHHHHHHH----h--hccEEEEEEeCCCCCchhHHHHHHHHHHcCC-C-cEEEEcCCCCC
Q 006610 116 WRENELNMVDTPGHADFGGEVERVV----G--MVEGAILVVDAGEGPLAQTKFVLAKALKYGL-R-PILLLNKVDRP 184 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~dF~~ev~~~l----~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~l-p-~IvviNKiD~~ 184 (639)
+.++.+.||||||...........+ . .+|.+++|+||..|. ......+.. ..++ | ..+|+||+|..
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSC
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCc
Confidence 2578899999999776433322222 1 478999999998764 222222222 2346 7 67899999974
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.52 E-value=1.1e-07 Score=98.60 Aligned_cols=104 Identities=22% Similarity=0.191 Sum_probs=76.9
Q ss_pred ceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCC-c-hhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHH
Q 006610 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-L-AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVES 196 (639)
Q Consensus 119 ~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~-~-~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~ 196 (639)
.+++|||| |+.|...+..+++.+|++|+|+|+++.. . .....++..+...++|+++|+||+|+.. ...+ +
T Consensus 63 ~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~--~~~v----~ 134 (301)
T 1u0l_A 63 GSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD--EDDL----R 134 (301)
T ss_dssp SSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC--HHHH----H
T ss_pred CeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC--chhH----H
Confidence 37999999 8888887888999999999999998754 2 3334566666778999999999999853 2111 2
Q ss_pred HHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHH
Q 006610 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (639)
Q Consensus 197 ~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~ 249 (639)
++.++...++. . ++++++||++|. |++++++.+.
T Consensus 135 ~~~~~~~~~~~----~-~~~~~~SAktg~--------------gv~~lf~~l~ 168 (301)
T 1u0l_A 135 KVRELEEIYSG----L-YPIVKTSAKTGM--------------GIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHHTT----T-SCEEECCTTTCT--------------THHHHHHHHS
T ss_pred HHHHHHHHHhh----h-CcEEEEECCCCc--------------CHHHHHHHhc
Confidence 23333333221 1 569999999999 9999998873
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.52 E-value=5.2e-08 Score=104.51 Aligned_cols=78 Identities=22% Similarity=0.191 Sum_probs=62.0
Q ss_pred eEeeeeEEEeecCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCC----------C-CchhHHHHHHHHHH----c
Q 006610 106 TIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE----------G-PLAQTKFVLAKALK----Y 170 (639)
Q Consensus 106 Ti~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~----------g-~~~qt~~~l~~~~~----~ 170 (639)
|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.++ . -+.....++..+.. .
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444556677788999999999999999999999999999999999876 1 22344556666554 2
Q ss_pred CCCcEEEEcCCCC
Q 006610 171 GLRPILLLNKVDR 183 (639)
Q Consensus 171 ~lp~IvviNKiD~ 183 (639)
++|+|+|.||+|+
T Consensus 284 ~~piiLvgNK~DL 296 (402)
T 1azs_C 284 TISVILFLNKQDL 296 (402)
T ss_dssp SCCEEEEEECHHH
T ss_pred CCeEEEEEEChhh
Confidence 6789999999997
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.51 E-value=1.1e-08 Score=109.29 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------- 133 (639)
++|+++|.+|+|||||+|+|+....... +.......+|+|.......+ +..+.++||||..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~------~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~ 233 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKG------NVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD 233 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTT------CCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCc------cceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHh
Confidence 5899999999999999999998721110 01122334566665443332 2358999999965432
Q ss_pred HHHHHHH---hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC
Q 006610 134 GEVERVV---GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (639)
Q Consensus 134 ~ev~~~l---~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (639)
.+....+ ...|.+++++|+...........+..+...+.|+++++||+|...
T Consensus 234 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 234 ARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 2223333 678999999998533221111113333455789999999999854
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.51 E-value=1.5e-08 Score=107.99 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCch-------
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~------- 133 (639)
++|+++|.+|+|||||+|+|+....... .+.......+|+|.......+ . ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~-----~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~ 232 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET-----ENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQMAHYVG 232 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC-----SSCCEEECCC----CEEEEES--S-SSCEEEECCCBCCTTSGGGGSC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc-----ccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHHHHHHhh
Confidence 5799999999999999999998742210 011123344566665544333 2 248999999975432
Q ss_pred HHHHHH---HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCC
Q 006610 134 GEVERV---VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (639)
Q Consensus 134 ~ev~~~---l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (639)
.+.... ....+.+++++|+...........+..+...+.|+++|+||+|...
T Consensus 233 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 233 KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 222222 2556889999998533222222223333455789999999999854
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.43 E-value=2e-06 Score=93.14 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=69.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccc--cc---------ccccccceeEeeeeE-------------EE
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMD--SI---------SLERERGITIASKVT-------------GI 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D--~~---------~~e~ergiTi~~~~~-------------~~ 114 (639)
+.+.|+++|.+|+||||++..|............+.+ .. ......|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999864322111111111 10 011122333322111 11
Q ss_pred eecCceEEEEeCCCCCCch----HHHHH--HHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCC
Q 006610 115 SWRENELNMVDTPGHADFG----GEVER--VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~----~ev~~--~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (639)
...++.+.||||||..... .+... ....+|.++||+||..|.. .....+...+ .++ ..+|+||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCc
Confidence 1235899999999954432 22222 2234689999999987632 2223333333 344 46899999974
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.43 E-value=1.1e-06 Score=94.99 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=71.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccc-----------ccccccceeEeeee-------------EEE
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----------SLERERGITIASKV-------------TGI 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----------~~e~ergiTi~~~~-------------~~~ 114 (639)
..+.|+++|+.|+||||++..|............+.+.+ ......|+.+.... ..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 357899999999999999999875432111110010100 00111233222110 111
Q ss_pred eecCceEEEEeCCCCCC------chHHHHHHHhh--ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 115 SWRENELNMVDTPGHAD------FGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~d------F~~ev~~~l~~--aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.+.++.+.||||||... +..++....+. .|.++||+||..|.. .....+...+.--+..|++||+|..
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence 23478899999999644 44555544433 489999999987632 2233333333334567899999975
No 219
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.43 E-value=1.3e-07 Score=100.01 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=78.2
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCC----------C-CCchhHHHHHHHHHH----cCCCcEEEEcCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAG----------E-GPLAQTKFVLAKALK----YGLRPILLLNKV 181 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~----------~-g~~~qt~~~l~~~~~----~~lp~IvviNKi 181 (639)
+..++.||||+|+..|...+..+++.++++|+|+|.+ . .-......+|..+.. .++|+|+|.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3578999999999999999999999999999999975 1 122334455655543 368999999999
Q ss_pred CCCCC-----C----------------HHHHHHHHHHHHHHHHhc---CCCC--ccccccEEecccccCCCCCcccCCCc
Q 006610 182 DRPAV-----S----------------EERCDEVESLVFDLFANL---GATD--EQLDFPVLYASAKEGWASSTFTKDPP 235 (639)
Q Consensus 182 D~~~~-----~----------------~~~~~~v~~~i~~l~~~~---g~~~--~~~~~Pvi~~SA~~g~~~~~~~~~~~ 235 (639)
|+... . +...++..+-+.+.|..+ .... ....+.++++||+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 97320 0 001122222222222211 1000 0113557899999998
Q ss_pred ccccchHHHHHHHHhhC
Q 006610 236 ADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 236 ~~~~gl~~Lld~I~~~l 252 (639)
|++.+|+++.+.+
T Consensus 331 ----nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 ----LVKKTFKLVDETL 343 (354)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH
Confidence 9999999887654
No 220
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.36 E-value=7e-07 Score=97.03 Aligned_cols=124 Identities=18% Similarity=0.098 Sum_probs=72.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCC-CCccccccccc-----------cccccceeEeeee-------------E
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD-IPHERAMDSIS-----------LERERGITIASKV-------------T 112 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-~~~~~v~D~~~-----------~e~ergiTi~~~~-------------~ 112 (639)
...+.|+++|+.|+||||++..|....... .....+.|.+. .....++.+.... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999998553221 11111111111 1122344333211 1
Q ss_pred EEeecCceEEEEeCCCCCCchHHHHHH------HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCC
Q 006610 113 GISWRENELNMVDTPGHADFGGEVERV------VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (639)
Q Consensus 113 ~~~~~~~~i~iIDTPGh~dF~~ev~~~------l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (639)
.+.+.++.+.||||||...+....... +..+|.+++|+|+..|. ......+... .++++ -+|+||+|..
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTTSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCCCC
Confidence 112357899999999987664443332 33578999999998762 2222222222 23553 4799999974
No 221
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.34 E-value=9e-07 Score=94.73 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=61.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecC-----------------ceEE
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELN 122 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~-----------------~~i~ 122 (639)
..+|+|+|++|+|||||+++|++... ......+++|+......+.+.+ ..+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~-----------a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~ 88 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL-----------GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLT 88 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT-----------TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-----------ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceE
Confidence 46899999999999999999998521 0222334555555555555543 4689
Q ss_pred EEeCCCCCC-------chHHHHHHHhhccEEEEEEeCCC
Q 006610 123 MVDTPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 123 iIDTPGh~d-------F~~ev~~~l~~aD~allVVDa~~ 154 (639)
++||||... +.......++.+|+++.|+|+.+
T Consensus 89 lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 89 VFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999543 45577788899999999999975
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.24 E-value=1.1e-06 Score=90.85 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=71.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccc-----------cccccceeEeeee-------------EEEe
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----------LERERGITIASKV-------------TGIS 115 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----------~e~ergiTi~~~~-------------~~~~ 115 (639)
...|+++|+.|+||||++..|............+.|.+. .....|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999998755321111111111110 0111234332210 0112
Q ss_pred ecCceEEEEeCCCCCC--chHHHH------HHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCC
Q 006610 116 WRENELNMVDTPGHAD--FGGEVE------RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (639)
Q Consensus 116 ~~~~~i~iIDTPGh~d--F~~ev~------~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (639)
+.++.+.||||||... ...... .....+|.+++|+|+..+ .+.....+...+ .++ ..+|+||+|..
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 3678999999999877 432221 234578999999999764 233333333333 577 56899999974
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.18 E-value=2.7e-06 Score=87.18 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=69.6
Q ss_pred EEeCCCCC-CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHH
Q 006610 123 MVDTPGHA-DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (639)
Q Consensus 123 iIDTPGh~-dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l 201 (639)
|=+-|||. ....++.+.+..+|+++.|+||.++.......+-+.+ .++|.++|+||+|+.. ... .+...+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~~~----~~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--AAV----TQQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--HHH----HHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--HHH----HHHHHHH
Confidence 44679997 4667889999999999999999987665433332222 5789999999999954 322 2333444
Q ss_pred HHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCC
Q 006610 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (639)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP 253 (639)
+...+ ++++++||++|. |+++|++.+.+.++
T Consensus 75 ~~~~g-------~~~i~iSA~~~~--------------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 75 FENQG-------IRSLSINSVNGQ--------------GLNQIVPASKEILQ 105 (282)
T ss_dssp HHTTT-------CCEEECCTTTCT--------------TGGGHHHHHHHHHH
T ss_pred HHhcC-------CcEEEEECCCcc--------------cHHHHHHHHHHHHH
Confidence 44333 469999999998 88888888776654
No 224
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.12 E-value=4.8e-06 Score=80.69 Aligned_cols=112 Identities=12% Similarity=0.015 Sum_probs=66.2
Q ss_pred eEEEEeCC------CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHH----HHHH----cCCCcEEEEcCC-CCC
Q 006610 120 ELNMVDTP------GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLA----KALK----YGLRPILLLNKV-DRP 184 (639)
Q Consensus 120 ~i~iIDTP------Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~----~~~~----~~lp~IvviNKi-D~~ 184 (639)
++..-.+| |+..+...+..++..+|++|+|||+++.-....+.-+. .+.+ .++|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45556666 67777888899999999999999987653323444332 1211 478999999995 776
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 185 AVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 185 ~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
++-.. .++.+.+ + +..+ ...+-+..|||++|. |+.+-++||.+.+..
T Consensus 177 ~Ams~--~EI~e~L-~-L~~l-----~R~W~Iq~csA~TGe--------------GL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 177 KRMPC--FYLAHEL-H-LNLL-----NHPWLVQDTEAETLT--------------GFLNGIEWILEEVES 223 (227)
T ss_dssp CBCCH--HHHHHHT-T-GGGG-----CSCEEEEEEETTTCT--------------THHHHHHHHTTTTTT
T ss_pred CCCCH--HHHHHHc-C-CcCC-----CCCEEEEEeECCCCc--------------CHHHHHHHHHHHHHh
Confidence 65321 2222221 1 1111 124679999999999 999999999887743
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.06 E-value=3.8e-06 Score=86.94 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCchHHHHHHHhhccEEEEEEeCCCCC-chh-HHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006610 129 HADFGGEVERVVGMVEGAILVVDAGEGP-LAQ-TKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (639)
Q Consensus 129 h~dF~~ev~~~l~~aD~allVVDa~~g~-~~q-t~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g 206 (639)
|..|......+++.+|++++|+|+++.. ... ...++..+...++|+++|+||+|+.. ...+ +..++..+.+..++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~--~~~v-~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN--EEEK-KELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC--HHHH-HHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC--cccc-HHHHHHHHHHHHCC
Confidence 4444433445788999999999998753 333 34566677778999999999999853 2211 11233444444443
Q ss_pred CCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
++++++||++|. |+++|++.+
T Consensus 143 -------~~~~~~SA~~g~--------------gi~~L~~~l 163 (302)
T 2yv5_A 143 -------YDVLKVSAKTGE--------------GIDELVDYL 163 (302)
T ss_dssp -------CEEEECCTTTCT--------------THHHHHHHT
T ss_pred -------CeEEEEECCCCC--------------CHHHHHhhc
Confidence 469999999998 888888775
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.96 E-value=3.9e-06 Score=94.22 Aligned_cols=105 Identities=16% Similarity=0.080 Sum_probs=61.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEE-eecCceEEEEeCCCCCCchH---
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI-SWRENELNMVDTPGHADFGG--- 134 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~-~~~~~~i~iIDTPGh~dF~~--- 134 (639)
+...|+|+|.+++|||||+|+|++.........+. ....+|+.... ..+ ...+..+.|+||||..+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt-----~~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~~~~~~~ 109 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTV-----QSHTKGIWMWC--VPHPKKPGHILVLLDTEGLGDVEKGDN 109 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSS-----SCCCCSEEEEE--EECSSSTTCEEEEEEECCBCCGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCC-----CCceeEEEEee--cccccCCCceEEEecCCCcCcccccch
Confidence 46789999999999999999998752110000000 00111211100 000 12467899999999765321
Q ss_pred ---HHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc
Q 006610 135 ---EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY 170 (639)
Q Consensus 135 ---ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~ 170 (639)
....++...-..++|+|+..++..+....+..+.+.
T Consensus 110 ~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 110 QNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp TTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTH
T ss_pred hHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHH
Confidence 111123332234788898888888888777666544
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.94 E-value=1.4e-05 Score=85.14 Aligned_cols=111 Identities=21% Similarity=0.110 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHH
Q 006610 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVF 199 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~ 199 (639)
++.-+++| +.+|......+...++.+|+|+|+.+........+.+.+ .+.|+++|+||+|+..... ....+.+.+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~-~~~~~~~~l~ 125 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSV-KYPKLLRWMR 125 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTC-CHHHHHHHHH
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCcc-CHHHHHHHHH
Confidence 44455555 788998888888999999999999875532222222222 2789999999999864321 1123334444
Q ss_pred HHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
+.+...|... .+++++||++|+ |+++|++.|.++.
T Consensus 126 ~~~~~~g~~~----~~v~~iSA~~g~--------------gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 126 RMAEELGLCP----VDVCLVSAAKGI--------------GMAKVMEAINRYR 160 (369)
T ss_dssp HHHHTTTCCC----SEEEECBTTTTB--------------THHHHHHHHHHHH
T ss_pred HHHHHcCCCc----ccEEEEECCCCC--------------CHHHHHHHHHhhc
Confidence 5556666532 258999999999 9999999997765
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.90 E-value=5.1e-05 Score=72.89 Aligned_cols=121 Identities=11% Similarity=0.076 Sum_probs=75.9
Q ss_pred cEEEEE-cCCCCCHHHHHHHHHHHcCCCCCcccccccccc--------ccccceeEeeeeE-EE------eecCceEEEE
Q 006610 61 RNVAVI-AHVDHGKTTLMDRLLRQCGADIPHERAMDSISL--------ERERGITIASKVT-GI------SWRENELNMV 124 (639)
Q Consensus 61 rnIaIi-Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~--------e~ergiTi~~~~~-~~------~~~~~~i~iI 124 (639)
+.|+|. +..|+||||++-.|............+.|.++. ....+..+..... .+ --+.+.+.||
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 457777 568899999988876543211111122222211 0111111111000 00 0135889999
Q ss_pred eCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc-----CCCcEEEEcCCCCC
Q 006610 125 DTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-----GLRPILLLNKVDRP 184 (639)
Q Consensus 125 DTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~ 184 (639)
|||+.. ......++..+|.+|+++.+.... ..+...++.+.+. ++++.+|+||+|..
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 999976 456678899999999999988777 7777888887765 35678999999953
No 229
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.85 E-value=0.00012 Score=76.27 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=66.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccc-----------ccc---ccceeEe-eeeE----------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----------LER---ERGITIA-SKVT---------- 112 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----------~e~---ergiTi~-~~~~---------- 112 (639)
.....|+|+|..|+||||++..|............+.|.+. ... ..++.+. ....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 34578999999999999999988754321111111111110 000 2344333 1110
Q ss_pred EE---eecCceEEEEeCCCCCCchH----HHHH---HH-----hhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCc-
Q 006610 113 GI---SWRENELNMVDTPGHADFGG----EVER---VV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRP- 174 (639)
Q Consensus 113 ~~---~~~~~~i~iIDTPGh~dF~~----ev~~---~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~- 174 (639)
.+ ...++.+.||||||...... +... .+ ..+|.+++|+|+..+ .. .+..+..+ .+++
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~---~l~~~~~~~~~~~i~ 257 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QN---GVIQAEEFSKVADVS 257 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HH---HHHHHHHHTTTSCCC
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HH---HHHHHHHHhhcCCCc
Confidence 00 01478999999999765422 2221 22 137899999999854 22 22333333 2443
Q ss_pred EEEEcCCCCC
Q 006610 175 ILLLNKVDRP 184 (639)
Q Consensus 175 IvviNKiD~~ 184 (639)
=+|+||+|..
T Consensus 258 GvVltk~d~~ 267 (320)
T 1zu4_A 258 GIILTKMDST 267 (320)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeCCCCC
Confidence 4789999963
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.80 E-value=9.7e-06 Score=82.12 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=63.5
Q ss_pred CCCCCch-HHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 127 PGHADFG-GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 127 PGh~dF~-~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
|||.... .++...+..+|.+|.|+||.++.......+ ..+ ++|.++|+||+|+.. ... .+...+.+...
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~--~~~----~~~~~~~~~~~ 74 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIAD--EKT----TKKWVEFFKKQ 74 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSC--HHH----HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCC--HHH----HHHHHHHHHHc
Confidence 8987644 588899999999999999988765432221 111 899999999999953 322 23334445443
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
| +|+ ++||++|. |++.|++.+.+.+
T Consensus 75 g-------~~v-~iSa~~~~--------------gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 75 G-------KRV-ITTHKGEP--------------RKVLLKKLSFDRL 99 (262)
T ss_dssp T-------CCE-EECCTTSC--------------HHHHHHHHCCCTT
T ss_pred C-------CeE-EEECCCCc--------------CHHHHHHHHHHhh
Confidence 3 467 99999998 9999998875443
No 231
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.79 E-value=5.6e-05 Score=76.74 Aligned_cols=105 Identities=12% Similarity=0.000 Sum_probs=70.8
Q ss_pred CCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHH----HHH---HH-cCCCcEEEEcC-CCCCCCCHHHHHHHHHH
Q 006610 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVL----AKA---LK-YGLRPILLLNK-VDRPAVSEERCDEVESL 197 (639)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l----~~~---~~-~~lp~IvviNK-iD~~~~~~~~~~~v~~~ 197 (639)
.|+..+...+..++..+|++|+|||+++......+.-+ ..+ .. .+.|++|+.|| -|.+++-.. .++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~--~EI~e- 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC--FYLAH- 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH--HHHHH-
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH--HHHHH-
Confidence 37788899999999999999999998765322233322 222 22 58999999997 588765331 22222
Q ss_pred HHHHHHhcCCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhCCC
Q 006610 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (639)
Q Consensus 198 i~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~lP~ 254 (639)
.+ +...-...+-|..+||.+|. |+.+-++++.+.+-.
T Consensus 272 ---~L---~L~~l~r~W~Iq~csA~tGe--------------GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ---EL---HLNLLNHPWLVQDTEAETLT--------------GFLNGIEWILEEVES 308 (312)
T ss_dssp ---HT---TGGGGCSCEEEEEEETTTCT--------------THHHHHHHHHHHSCC
T ss_pred ---Hc---CCccCCCcEEEEecccCCCc--------------CHHHHHHHHHHHHHh
Confidence 21 11111124679999999999 999999999988753
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.75 E-value=2.5e-05 Score=79.94 Aligned_cols=59 Identities=29% Similarity=0.391 Sum_probs=35.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD 131 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~d 131 (639)
+..+|+++|.+|+|||||+|+|++... .......|+|.......+ +..+.|+||||..+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~-----------~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI-----------AKTGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC-----------C------------CCEEE---TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce-----------eecCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 346899999999999999999986521 122233466655442222 45899999999754
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.73 E-value=3.3e-05 Score=82.12 Aligned_cols=102 Identities=22% Similarity=0.098 Sum_probs=69.3
Q ss_pred CCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH--cCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006610 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (639)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~ 205 (639)
..++|......+.+.+|++|+|+|+.+.. ..+...+.+ .+.|+++|+||+|+..... ...++.+.+...+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~-~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSV-KHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTS-CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCccc-CHHHHHHHHHHHHHHc
Confidence 35678888888889999999999998632 112222222 3789999999999854321 1122333344445555
Q ss_pred CCCCccccccEEecccccCCCCCcccCCCcccccchHHHHHHHHhhC
Q 006610 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (639)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I~~~l 252 (639)
|... .+++++||++|+ |+++|++.|.++.
T Consensus 130 g~~~----~~v~~iSA~~g~--------------gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKP----EDVFLISAAKGQ--------------GIAELADAIEYYR 158 (368)
T ss_dssp TCCC----SEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred CCCc----ccEEEEeCCCCc--------------CHHHHHhhhhhhc
Confidence 5421 258999999999 9999999997764
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.72 E-value=0.00015 Score=75.65 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccc--cc---ccc------ccccceeEeeeeEEE-------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DS---ISL------ERERGITIASKVTGI------------- 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~---~~~------e~ergiTi~~~~~~~------------- 114 (639)
+...|+++|+.|+|||||+..|.+........-.+. |. ... .+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 356899999999999999999886532111110000 00 000 112233222111000
Q ss_pred eecCceEEEEeCCCCCC----chHHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 115 SWRENELNMVDTPGHAD----FGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~d----F~~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
...++.+.++||+|... +..+..... -..|-.++++|+..+- +....++...+.--..++++||+|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 01256788999999643 333332221 2368899999987662 3333333333221234788999996
No 235
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.64 E-value=0.00022 Score=71.81 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=51.7
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (639)
+.+.+.|||||+...........+..+|.+|+|+.+.......+...++.+.+.+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999876543222233447999999999887766777788888888899987 89999984
No 236
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.62 E-value=8.5e-05 Score=72.32 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=76.0
Q ss_pred EEEEE-cCCCCCHHHHHHHHHHHcCCCCCcccccccccccccc------cee--Eeee-eEEEeecCceEEEEeCCCC-C
Q 006610 62 NVAVI-AHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER------GIT--IASK-VTGISWRENELNMVDTPGH-A 130 (639)
Q Consensus 62 nIaIi-Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~er------giT--i~~~-~~~~~~~~~~i~iIDTPGh-~ 130 (639)
.|+|+ +..|+||||+.-.|........ ...+.|.++...-. ... +... ...--...+.+.|||||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 36665 6689999999888875543222 33333433321000 000 0000 0000124678999999997 5
Q ss_pred CchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc-CCCcEEEEcCCCCC
Q 006610 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-GLRPILLLNKVDRP 184 (639)
Q Consensus 131 dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~-~lp~IvviNKiD~~ 184 (639)
.. .+..++..+|.+|+++.+.......+...++.+.+. +.+..+|+|++|..
T Consensus 81 ~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 81 DE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp SS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 43 456788999999999998766566677777777773 77888999999974
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.57 E-value=0.00018 Score=78.64 Aligned_cols=123 Identities=22% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--ccccc---------cccccceeEeeeeEEE------------
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVTGI------------ 114 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~e~ergiTi~~~~~~~------------ 114 (639)
.....|+|+|..|+|||||+..|.+........-.+ .|... ....+++.+.......
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345689999999999999999988653211111011 01110 0012334332221110
Q ss_pred -eecCceEEEEeCCCCCCch----HHHH---HHHh-----hccEEEEEEeCCCCCchhHHHHHHHHH-HcCCCcEEEEcC
Q 006610 115 -SWRENELNMVDTPGHADFG----GEVE---RVVG-----MVEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNK 180 (639)
Q Consensus 115 -~~~~~~i~iIDTPGh~dF~----~ev~---~~l~-----~aD~allVVDa~~g~~~qt~~~l~~~~-~~~lp~IvviNK 180 (639)
...++.+.||||+|..... .+.. +..+ ..+-++||+|+..|-. ....++... ..++ ..+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEEEEc
Confidence 0136789999999975422 2222 2222 1356899999887621 122233332 2343 3678999
Q ss_pred CCC
Q 006610 181 VDR 183 (639)
Q Consensus 181 iD~ 183 (639)
+|.
T Consensus 448 LD~ 450 (503)
T 2yhs_A 448 LDG 450 (503)
T ss_dssp GGG
T ss_pred CCC
Confidence 996
No 238
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.52 E-value=0.00019 Score=77.41 Aligned_cols=123 Identities=21% Similarity=0.211 Sum_probs=67.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccc-----c------cccccceeEeeeeE-----E-----E---
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----S------LERERGITIASKVT-----G-----I--- 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----~------~e~ergiTi~~~~~-----~-----~--- 114 (639)
....|+++|+.|+||||++..|............+.|.+ . .....|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999876532211111111100 0 01112333322110 0 1
Q ss_pred eecCceEEEEeCCCCCCch----HHHHHH--HhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCC
Q 006610 115 SWRENELNMVDTPGHADFG----GEVERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~----~ev~~~--l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (639)
...++.+.||||||..... .+.... ...+|.++||+|+..+ .......+.... .++ .-+|+||+|..
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 1256789999999965432 222222 2247899999998765 122222222222 354 46789999964
No 239
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.52 E-value=4.2e-05 Score=77.43 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=36.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF 132 (639)
.+++++|.+|+|||||+++|++.... ......|+|....... .+..++||||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-----------~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-----------SVGAQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-----------ccCCCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 58999999999999999999965221 1122235555433221 2458999999997764
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.49 E-value=0.00016 Score=74.77 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccc-----------ccccccceeEeeee-------------EEE
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----------SLERERGITIASKV-------------TGI 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----------~~e~ergiTi~~~~-------------~~~ 114 (639)
....|+|+|+.|+||||++..|..........-.+.|.+ ..-...++.+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 456899999999999999999876432111110010100 00011233321110 000
Q ss_pred eecCceEEEEeCCCCCCchHHH-------HHHH-----hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCC
Q 006610 115 SWRENELNMVDTPGHADFGGEV-------ERVV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKV 181 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~~ev-------~~~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKi 181 (639)
...++.+.|+||||........ .+.+ ...|.+++|+|+..+ .......+...+ .++ .-+++||+
T Consensus 183 ~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlTk~ 259 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILTKL 259 (306)
T ss_dssp HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEECG
T ss_pred HhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEeCC
Confidence 1246789999999965433222 1222 136889999999743 112222222222 233 35778999
Q ss_pred CCC
Q 006610 182 DRP 184 (639)
Q Consensus 182 D~~ 184 (639)
|..
T Consensus 260 D~~ 262 (306)
T 1vma_A 260 DGT 262 (306)
T ss_dssp GGC
T ss_pred CCc
Confidence 964
No 241
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.48 E-value=0.00049 Score=69.16 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=50.1
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc--CCCcEEEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~--~lp~IvviNKiD~~ 184 (639)
..+.+.|||||+... .....++..+|.+|+++.+...-......+++.+.+. ++++.+|+|+++..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 357899999998653 3567788899999999998765555556667777666 45678999999654
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.46 E-value=0.00037 Score=71.96 Aligned_cols=123 Identities=25% Similarity=0.231 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccc--ccc------ccc---cccceeEeeeeEE----------E---
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DSI------SLE---RERGITIASKVTG----------I--- 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~~------~~e---~ergiTi~~~~~~----------~--- 114 (639)
+...|+|+|+.|+|||||+..|..........-.+. |.. ... +.+++.+...... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999986532111110000 100 000 1123322111100 0
Q ss_pred eecCceEEEEeCCCCCCch----HHHH---HHH-----hhccEEEEEEeCCCCCchhHHHHHHHH-HHcCCCcEEEEcCC
Q 006610 115 SWRENELNMVDTPGHADFG----GEVE---RVV-----GMVEGAILVVDAGEGPLAQTKFVLAKA-LKYGLRPILLLNKV 181 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~----~ev~---~~l-----~~aD~allVVDa~~g~~~qt~~~l~~~-~~~~lp~IvviNKi 181 (639)
...++.+.++||+|..+.. .+.. .++ ...+.+++++|+..+.. ....++.. ...++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECC
Confidence 1134567899999965432 2221 121 12467899999887643 22233333 33454 57889999
Q ss_pred CCC
Q 006610 182 DRP 184 (639)
Q Consensus 182 D~~ 184 (639)
|..
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 964
No 243
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.45 E-value=0.00027 Score=80.11 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=39.1
Q ss_pred ceEEEEeCCCCCC--c-------hHHHHHH----Hhhc-cEEEEEEeCCCCCch-hHHHHHHHHHHcCCCcEEEEcCCCC
Q 006610 119 NELNMVDTPGHAD--F-------GGEVERV----VGMV-EGAILVVDAGEGPLA-QTKFVLAKALKYGLRPILLLNKVDR 183 (639)
Q Consensus 119 ~~i~iIDTPGh~d--F-------~~ev~~~----l~~a-D~allVVDa~~g~~~-qt~~~l~~~~~~~lp~IvviNKiD~ 183 (639)
-.+.|+|.||... . ...+... +..- ..+++++++...... ....+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 4699999998543 1 1223222 2222 456666776544332 2334555555568899999999998
Q ss_pred CC
Q 006610 184 PA 185 (639)
Q Consensus 184 ~~ 185 (639)
..
T Consensus 227 v~ 228 (608)
T 3szr_A 227 VD 228 (608)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.43 E-value=0.00029 Score=72.52 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=64.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC-CCCccccccccc-----------cccccceeEeeee-------EEEeecCc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA-DIPHERAMDSIS-----------LERERGITIASKV-------TGISWREN 119 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v~D~~~-----------~e~ergiTi~~~~-------~~~~~~~~ 119 (639)
+...|+++|+.|+||||++..|...... ....-.+.|.+. .....|+.+.... .--.+.++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3568999999999999999998754211 010000101000 0011122211000 00012567
Q ss_pred eEEEEeCCCCCCchH----HHHHHHh--hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 120 ELNMVDTPGHADFGG----EVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 120 ~i~iIDTPGh~dF~~----ev~~~l~--~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.+.|+||||...... +....+. ..|.+++|+|+..+.. ....+.+.....++ .-+++||+|..
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCcc
Confidence 899999999765432 2223332 2578899999886521 22222222221122 34677999975
No 245
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.22 E-value=0.0021 Score=55.85 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=57.5
Q ss_pred CCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe-
Q 006610 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV- 338 (639)
Q Consensus 260 ~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i- 338 (639)
..|..+.|..+..-=| |.+..|||.+|+|++|+.| +.+ . ...+|.+|... .+.+++|.|||.|++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~-----~-~vg~VkSIE~~----~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGP-----S-GIGGIVRIERN----REKVEFAIAGDRIGIS 97 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECS-----S-CEEEEEEEEET----TEEESEEETTCEEEEE
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCC-----c-eEEEEEEEEEC----CcCcCCcCCCCEEEEE
Confidence 3566666666433334 8899999999999999999 321 0 24578888763 468999999999987
Q ss_pred -cCCC-CCCcCCeeee
Q 006610 339 -AGMT-KPSIGHTVAN 352 (639)
Q Consensus 339 -~gl~-~~~~Gdtl~~ 352 (639)
.|.. ++..||+|..
T Consensus 98 Ikg~~~~I~~GdVLyv 113 (116)
T 1xe1_A 98 IEGKIGKVKKGDVLEI 113 (116)
T ss_dssp EESCCCCCCTTCEEEE
T ss_pred EECCccccCCCcEEEE
Confidence 4544 7788888754
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.20 E-value=0.0005 Score=70.68 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccccccc-----------ccccccceeEeeeeE-----E--------E
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----------SLERERGITIASKVT-----G--------I 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----------~~e~ergiTi~~~~~-----~--------~ 114 (639)
....|+++|+.|+||||++..|............+.|.+ ....+.++.+..... . .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998875421110000000000 001112333321100 0 0
Q ss_pred eecCceEEEEeCCCCCCch----HHHHHHH--hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCCC
Q 006610 115 SWRENELNMVDTPGHADFG----GEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (639)
Q Consensus 115 ~~~~~~i~iIDTPGh~dF~----~ev~~~l--~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (639)
...++.+.|+||||..... .++.... ..+|.+++|+|+..+ .......+.... .++ .-+|+||+|..
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 1146889999999865332 2221221 247899999998753 222222222222 345 34789999964
No 247
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.18 E-value=0.00019 Score=70.87 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=50.6
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC-cEEEEcCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDR 183 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp-~IvviNKiD~ 183 (639)
..+.+.|||||+.... ....++..+|.+|+|+++.......+..+.+.+.+.+++ +.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4789999999986544 455678999999999998655555666777777788876 4689999983
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=0.00025 Score=73.32 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=54.6
Q ss_pred HHhhccEEEEEEeCCCCCchhH--HHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccccE
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT--KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt--~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~Pv 216 (639)
++..+|.+++|+|+.++..... .+++..+...++|+++|+||+|+... ....+..+++.+.+...| +++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~g-------~~v 153 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED--QDTEDTIQAYAEDYRNIG-------YDV 153 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC--HHHHHHHHHHHHHHHHHT-------CCE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch--hhhHHHHHHHHHHHHhCC-------CeE
Confidence 5788999999999987654433 34555556789999999999999542 111122344555665555 359
Q ss_pred EecccccCC
Q 006610 217 LYASAKEGW 225 (639)
Q Consensus 217 i~~SA~~g~ 225 (639)
+++||.+|.
T Consensus 154 ~~~sa~~~~ 162 (307)
T 1t9h_A 154 YLTSSKDQD 162 (307)
T ss_dssp EECCHHHHT
T ss_pred EEEecCCCC
Confidence 999999998
No 249
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.15 E-value=0.00043 Score=71.22 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=46.4
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH----cCCCcE-EEEcCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK----YGLRPI-LLLNKVDR 183 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~~lp~I-vviNKiD~ 183 (639)
+.+.+.|||||+..... .+..++..+|.+|+|+++...-...+..+++.+.+ .+++++ +|+||++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35889999999865432 22346788999999998765444555566666665 345554 89999994
No 250
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.13 E-value=0.0011 Score=66.30 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=46.3
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH------cCCCcE-EEEcCCCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK------YGLRPI-LLLNKVDRP 184 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~------~~lp~I-vviNKiD~~ 184 (639)
..+.+.|||||+.... ....++..+|.+|+++.+.......+..+++.+.+ .+++++ +|+|++|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 4688999999987543 35667889999999999875444444444444432 256664 899999863
No 251
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.06 E-value=0.0024 Score=65.16 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH------cCCCcE-EEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK------YGLRPI-LLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~------~~lp~I-vviNKiD~~ 184 (639)
.+.+.|||||+.... ....++..+|.+|+++.+...........++.+.+ .+++++ +|+|++|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 578999999997654 34567788999999999876655555555555544 266754 899999963
No 252
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.02 E-value=0.0011 Score=66.09 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=48.8
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcC---------CCcEEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG---------LRPILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~---------lp~IvviNKiD~ 183 (639)
.+.+.|||||+... ..+..++..+|.+|+|+++.......+..+++.+...+ ....+|+|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 68999999998554 46778899999999999987555555666666665544 356789999984
No 253
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.01 E-value=0.0016 Score=63.88 Aligned_cols=65 Identities=23% Similarity=0.186 Sum_probs=51.5
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (639)
.+.+.|||||+... .....++..+|.+|+|+++.......+...++.+.+.+.+. -+|+||+|..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 57899999998654 56677899999999999987655566677777777777765 4789999964
No 254
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.01 E-value=0.0011 Score=66.15 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=51.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (639)
.+.+.|||||+... .....++..+|.+|+|+.+.......+...++.+.+.+.+.+ +|+|++|.
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 57899999998655 566778899999999998876555666777777777777654 89999996
No 255
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.97 E-value=0.0033 Score=64.18 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=54.1
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPA 185 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~ 185 (639)
.+.+.|||||...... +.......+|++|+|+.+...........++.+.+.+.+++ +|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4679999999976542 34456678999999999988777888888899999998864 8999999643
No 256
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.96 E-value=0.0024 Score=64.74 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=52.7
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
.+.+.|||||+..... +.......+|++|+|+.+...........++.+.+.+++++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4689999999975532 33445678999999999988777888888888888899877 899999963
No 257
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.94 E-value=0.0013 Score=64.70 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=50.7
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCC---cEEEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR---PILLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp---~IvviNKiD~~ 184 (639)
.+.+.|||||+..+. ....++..+|.+|+++.+.......+..+++.+.+.+.+ .-+|+||+|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578999999986543 456688999999999998765556677778888777643 56899999964
No 258
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.83 E-value=0.0044 Score=63.63 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=53.3
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
.+.+.|||||+..... +.......+|.+|+|+.+......+....++.+.+.+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4679999999976543 33345678999999999988878888888888888898865 889999964
No 259
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0065 Score=62.53 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=66.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--ccccc---------cccccceeEeeeeEE-Ee-----------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVTG-IS----------- 115 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~e~ergiTi~~~~~~-~~----------- 115 (639)
....++++|+.|+|||||+..|.+........-.+ .|... ....+++.+...... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 34579999999999999999998653211110000 01110 001124444322221 10
Q ss_pred --ecCceEEEEeCCCCCCchHHH-------HHHHh-----hccEEEEEEeCCCCCchhHHHHHHHHH-HcCCCcEEEEcC
Q 006610 116 --WRENELNMVDTPGHADFGGEV-------ERVVG-----MVEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNK 180 (639)
Q Consensus 116 --~~~~~i~iIDTPGh~dF~~ev-------~~~l~-----~aD~allVVDa~~g~~~qt~~~l~~~~-~~~lp~IvviNK 180 (639)
..+....++||.|..++.... ..++. ..+-++||+|++.|..+... ++... ..++ .+++++|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeC
Confidence 123457899999976543221 11221 24567999998877655433 23333 3455 4677899
Q ss_pred CCCC
Q 006610 181 VDRP 184 (639)
Q Consensus 181 iD~~ 184 (639)
+|..
T Consensus 256 lD~~ 259 (302)
T 3b9q_A 256 LDGS 259 (302)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9864
No 260
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.59 E-value=0.0011 Score=67.52 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=29.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAG 153 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~ 153 (639)
.+.+.|||||+.. ...+..++..+|.+|+++.+.
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4789999999975 566788999999999999875
No 261
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.52 E-value=0.0053 Score=66.52 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+.--|+|+|..++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35678999999999999999999986
No 262
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.44 E-value=0.011 Score=62.08 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=54.6
Q ss_pred HHhhccEEEEEEeCCCCCchhH---HHHHHHHHHcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 006610 139 VVGMVEGAILVVDAGEGPLAQT---KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt---~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~~v~~~i~~l~~~~g~~~~~~~~P 215 (639)
....+|.+++| ||..+ .... .+++..+...++|+++|+||+|+.. ... .+..+++...+..+| ++
T Consensus 127 i~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~--~~~-~~~~~~~~~~y~~~G-------~~ 194 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD--DEG-MDFVNEQMDIYRNIG-------YR 194 (358)
T ss_dssp EEECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC--HHH-HHHHHHHHHHHHTTT-------CC
T ss_pred HHhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCC--chh-HHHHHHHHHHHHhCC-------Cc
Confidence 35678988866 55443 3222 2345555678999999999999953 322 112333445555555 46
Q ss_pred EEecccccCCCCCcccCCCcccccchHHHHHHH
Q 006610 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (639)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gl~~Lld~I 248 (639)
++++||.+|. |+++|...+
T Consensus 195 v~~~Sa~~~~--------------gl~~L~~~~ 213 (358)
T 2rcn_A 195 VLMVSSHTQD--------------GLKPLEEAL 213 (358)
T ss_dssp EEECBTTTTB--------------THHHHHHHH
T ss_pred EEEEecCCCc--------------CHHHHHHhc
Confidence 9999999998 888777653
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0095 Score=62.77 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=65.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCcccc--ccccc------c---ccccceeEeeeeEE-E------------
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS------L---ERERGITIASKVTG-I------------ 114 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~------~---e~ergiTi~~~~~~-~------------ 114 (639)
....|+|+|+.|+|||||+..|.+........-.+ .|... . ...+++.+...... .
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 34679999999999999999998753211100000 01100 0 01123433222111 0
Q ss_pred -eecCceEEEEeCCCCCCchHHH-------HHHH-----hhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCC
Q 006610 115 -SWRENELNMVDTPGHADFGGEV-------ERVV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKV 181 (639)
Q Consensus 115 -~~~~~~i~iIDTPGh~dF~~ev-------~~~l-----~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKi 181 (639)
...++...++||.|...+.... ..++ ...+-++||+|++.|...... ........++ .+++++|+
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~-t~iiiThl 313 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILTKL 313 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEESC
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCC-eEEEEecC
Confidence 0124457899999976543211 1111 124567999998877654433 2222223454 46789999
Q ss_pred CCC
Q 006610 182 DRP 184 (639)
Q Consensus 182 D~~ 184 (639)
|..
T Consensus 314 D~~ 316 (359)
T 2og2_A 314 DGS 316 (359)
T ss_dssp TTC
T ss_pred ccc
Confidence 863
No 264
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.36 E-value=0.0079 Score=50.76 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=66.7
Q ss_pred eeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--cCC
Q 006610 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM 341 (639)
Q Consensus 264 ~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i--~gl 341 (639)
.+-|-+++..+..|.+|-.+|.+|.++.+..+.+.+.+. -....++.+|..+. .++.++.+|.=|+| .+.
T Consensus 8 ~AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~----vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~ 79 (99)
T 1d1n_A 8 QAEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGI----VVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNF 79 (99)
T ss_dssp EEEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSS----EEEEEECSEEECSS----SCCSCCBTTCEEEEECTTC
T ss_pred EEEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCE----EEEEeEEhhhcccc----cccceECCCcEEEEEEcCc
Confidence 355666777778899999999999999999999997531 35667888888765 48999999999877 578
Q ss_pred CCCCcCCeeeec
Q 006610 342 TKPSIGHTVANT 353 (639)
Q Consensus 342 ~~~~~Gdtl~~~ 353 (639)
.|++.||.|-.-
T Consensus 80 ~dik~GD~Ie~y 91 (99)
T 1d1n_A 80 NDIKEGDVIEAY 91 (99)
T ss_dssp SSCSSCSEEEEE
T ss_pred CCCCCCCEEEEE
Confidence 899999998553
No 265
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.11 E-value=0.018 Score=57.40 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=42.1
Q ss_pred CceEEEEeCCCCCCchHH-HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCCc-EEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRP-ILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~----~lp~-IvviNKiD~ 183 (639)
.+.+.||||||....... ..-....+|.+|+++.+.......+..+++.+.+. +++. -+|+|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 578999999996432111 11123579999999987654444444555555442 5664 588999974
No 266
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.94 E-value=0.049 Score=47.49 Aligned_cols=83 Identities=18% Similarity=0.071 Sum_probs=66.4
Q ss_pred eeEEEeeeeecccce---EEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe--
Q 006610 264 QMLVTMMEKDFYLGR---ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV-- 338 (639)
Q Consensus 264 ~~~V~~~~~d~~~G~---i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i-- 338 (639)
.+-|-+++..+..|+ +|-.+|.+|+++.+..+.+.+.+ .-....++.+|..+. .++.++.+|.=|+|
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg----~vI~eG~i~SLkrfK----dDVkEV~~G~ECGi~l 83 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNG----QVIWKGSLTSLKHHK----DDISVIKTGMDCGLSL 83 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETT----EEEEEECCSEEESSS----SCCSEECTTCEEEEEC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECC----EEEEEeEehhhcccc----cccceecCCCEEEEEE
Confidence 456667777777787 99999999999999999999753 134567888887765 48999999999877
Q ss_pred cCCC-CCCcCCeeeecC
Q 006610 339 AGMT-KPSIGHTVANTE 354 (639)
Q Consensus 339 ~gl~-~~~~Gdtl~~~~ 354 (639)
.+.. |++.||+|-.-+
T Consensus 84 ~~fniDik~GDiIE~ye 100 (120)
T 2crv_A 84 DEEKVEFKPGDQVICYE 100 (120)
T ss_dssp SCTTSCCCTTEEEEEEC
T ss_pred ccCCCCCCCCCEEEEEE
Confidence 5788 999999996543
No 267
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.77 E-value=0.0054 Score=67.08 Aligned_cols=107 Identities=11% Similarity=0.135 Sum_probs=61.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccc-cceeEeeeeEEEeecCceEEEEeCCCCCCc--hHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERE-RGITIASKVTGISWRENELNMVDTPGHADF--GGEV 136 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~e-rgiTi~~~~~~~~~~~~~i~iIDTPGh~dF--~~ev 136 (639)
..+|+++|.+|+||||+..+|....+.........+......+ .| ......++|+.|...| ...+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g------------~~~~~~ifd~~g~~~~r~re~~ 106 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVK------------TYKSFEFFLPDNEEGLKIRKQC 106 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHC------------SCCCGGGGCTTCHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhcc------------CCCcccccCCCCHHHHHHHHHH
Confidence 4689999999999999999998763311111101000000000 00 0123356788886322 2222
Q ss_pred --------HHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEE
Q 006610 137 --------ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLL 178 (639)
Q Consensus 137 --------~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~Ivvi 178 (639)
..++...+|.++|+|++......-..++..+.+.+.+++++-
T Consensus 107 ~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 107 ALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 445555788899999987644444455566777777665443
No 268
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.71 E-value=0.021 Score=57.81 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=41.1
Q ss_pred CceEEEEeCCCCCCchHH-HHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHH----cCCCc-EEEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK----YGLRP-ILLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~e-v~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~----~~lp~-IvviNKiD~ 183 (639)
.+.+.||||||....... .......+|.+|+++.+...-...+..+++.+.+ .+++. -+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 678999999996432111 1122357999999998764433444444444443 26664 478999874
No 269
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.51 E-value=0.017 Score=59.69 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
++..++|+|..|||||||++.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999999763
No 270
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.23 E-value=0.21 Score=52.16 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.5
Q ss_pred ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCCC
Q 006610 143 VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPA 185 (639)
Q Consensus 143 aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~ 185 (639)
.+++++|.-+..-....+++.+..+.+.++|+. +|+|++....
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~ 280 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPED 280 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCcccc
Confidence 478999998877777888999999999999984 8999998653
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.96 E-value=0.007 Score=62.38 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++|+|++|+|||||++.|+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 57999999999999999999764
No 272
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.90 E-value=0.3 Score=50.38 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.2
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
+++++|.-+..-....+++.+..+.+.|+|+. +|+|++...
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 58999998877777888899999999999984 899999865
No 273
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.87 E-value=0.036 Score=56.86 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++++|++|+|||||++.|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 478999999999999999998 5
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.70 E-value=0.013 Score=61.75 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
..++|+|++|+|||||++.|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 369999999999999999998653
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.70 E-value=0.18 Score=47.03 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|+|+|.+|+||||+...|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999766
No 276
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.52 E-value=0.022 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+++|+|+.|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
No 277
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.40 E-value=0.02 Score=54.75 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+.++|+|++|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
No 278
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.36 E-value=0.093 Score=56.26 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCCCCccccccccccccccceeEeeeeEEEeecCceEEEEeCCCCCCchHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~e~ergiTi~~~~~~~~~~~~~i~iIDTPGh~dF~~ev~~ 138 (639)
...-|+++|.+|||||||..+|....+.. +.|.+.. ..+......+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~-----~i~~D~~---------------------------~~~~~~~~~~~~ 304 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV-----HVNRDTL---------------------------GSWQRCVSSCQA 304 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE-----ECCGGGS---------------------------CSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE-----EEccchH---------------------------HHHHHHHHHHHH
Confidence 35679999999999999999998764321 1111111 011112233333
Q ss_pred HHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 139 ~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
.+.. +..+|+|+......+-..++..+.+.+.++.++.=.++
T Consensus 305 ~l~~--g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 305 ALRQ--GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp HHHT--TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHhc--CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 3433 33456898876555556667777888888765554443
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.33 E-value=0.029 Score=52.65 Aligned_cols=24 Identities=8% Similarity=0.342 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+.++|+|++|+|||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999999763
No 280
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.19 E-value=0.52 Score=49.21 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=34.9
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCCC
Q 006610 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPA 185 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~ 185 (639)
+++++|.-+..-....+.+.+..+.+.|+|+ -+|+|++.-..
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~ 274 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAE 274 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcccc
Confidence 5788888887766778889999999999997 58999998643
No 281
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.80 E-value=0.16 Score=57.04 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=34.0
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
+.+++|+.+.......+...++.+.+.+++.. +|+||++..
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 37899999887777888889999999999864 789999854
No 282
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.78 E-value=0.032 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+-++|+|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999976
No 283
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.73 E-value=0.033 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-..++|+|+.|||||||++.|.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999998864
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.72 E-value=0.046 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+-+-|+|+|++|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999763
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.62 E-value=0.036 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
..|+|+|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 469999999999999999998863
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.60 E-value=0.041 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..|+|+|++|+|||||++.|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999865
No 287
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.59 E-value=0.66 Score=44.00 Aligned_cols=22 Identities=27% Similarity=0.048 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLR 82 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (639)
..++|+|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.52 E-value=0.043 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|+|+|+.|||||||++.|...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.47 E-value=0.045 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..|+|+|++|||||||++.|...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998875
No 290
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.36 E-value=0.24 Score=54.38 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=75.9
Q ss_pred HHHHHHHHhhC---CCCCCCCCCCceeEEEeeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEe
Q 006610 242 SQLLDAIIRHV---PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMK 318 (639)
Q Consensus 242 ~~Lld~I~~~l---P~p~~~~~~p~~~~V~~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~ 318 (639)
-.|+|.+..++ -+|.....--..+.|-.++..+..|.++-.+|..|+++.|..+.+.+.+. .....+|.+|..
T Consensus 385 y~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~----~i~~g~i~sl~~ 460 (501)
T 1zo1_I 385 YNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNV----VIYEGELESLRR 460 (501)
T ss_dssp SHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSC----CCEEEEBCCEEE
T ss_pred HHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCe----EEEEEEEehhcc
Confidence 35666554433 24443333344556667777767799999999999999999999985431 235678888876
Q ss_pred eeCCceeeeccCCCCceEEe--cCCCCCCcCCeeeecC
Q 006610 319 KKGTGMVLIDSAGAGDIISV--AGMTKPSIGHTVANTE 354 (639)
Q Consensus 319 ~~g~~~~~v~~a~aGdIv~i--~gl~~~~~Gdtl~~~~ 354 (639)
+. .+++++..|.-|+| .+..+++.||.|-.-+
T Consensus 461 ~k----~~v~e~~~g~ecgi~~~~~~~~~~gd~~~~~~ 494 (501)
T 1zo1_I 461 FK----DDVNEVRNGMECGIGVKNYNDVRTGDVIEVFE 494 (501)
T ss_dssp TT----EEESEEETTCCEEEEBCCCTTCCTTCEEEECC
T ss_pred cC----ccccEECCCCEEEEEEcCcCCCCCCCEEEEEE
Confidence 53 58999999999887 5778999999986543
No 291
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.33 E-value=0.042 Score=53.38 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
..++|+|+.|+|||||++.|++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999998864
No 292
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.32 E-value=0.045 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-.++++|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999999874
No 293
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.24 E-value=0.057 Score=55.28 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++++|++|+|||||++.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 46899999999999999999865
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.14 E-value=0.052 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+|+|+|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988744
No 295
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.12 E-value=0.06 Score=51.26 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
....|+|+|.+|+|||||++.|....|
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 346799999999999999999988754
No 296
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.05 E-value=0.061 Score=56.74 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=28.9
Q ss_pred cCceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCC
Q 006610 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE 154 (639)
Q Consensus 117 ~~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~ 154 (639)
..+.+.|||||.. ....+..++..+|.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 4678999999943 44567788999999999998754
No 297
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.01 E-value=0.062 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..|+|+|++|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999875
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.01 E-value=0.075 Score=49.10 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
-..|+|+|.+|+|||||...|....|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999987654
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.99 E-value=0.051 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.-++|+|+.|+|||||++.|+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999999998863
No 300
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.94 E-value=0.97 Score=46.58 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=33.9
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCC
Q 006610 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (639)
+++++|..+.......+...++.+.+.|+|+. +|+|++.-
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47899998877677788899999999999975 78999983
No 301
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.92 E-value=0.062 Score=49.22 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987755
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.82 E-value=0.075 Score=49.43 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.++|+|+|.+|+||||+...|....+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 303
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.82 E-value=0.072 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+-++|+|..|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 467999999999999999999875
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.81 E-value=0.092 Score=49.79 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+.+.|+|.|.+|+||||+...|....|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999987754
No 305
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.75 E-value=0.072 Score=51.18 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-.-|+|+|++|+|||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4569999999999999999998764
No 306
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.73 E-value=0.44 Score=53.34 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred hccEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCCC
Q 006610 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (639)
Q Consensus 142 ~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (639)
.+|.+++|+.+.......+...++.+.+.|++. -+|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 468999999887666777888899999999986 5889999864
No 307
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.70 E-value=0.062 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 448999999999999999999763
No 308
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.70 E-value=0.25 Score=48.92 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
....|+++|.+|+||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999987743
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.67 E-value=0.056 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLL 81 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll 81 (639)
--++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999854
No 310
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.67 E-value=0.42 Score=51.56 Aligned_cols=74 Identities=26% Similarity=0.247 Sum_probs=42.9
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCCCCc---------ccccc--ccccccccceeEeeeeEEEee---cCceEEE
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH---------ERAMD--SISLERERGITIASKVTGISW---RENELNM 123 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~---------~~v~D--~~~~e~ergiTi~~~~~~~~~---~~~~i~i 123 (639)
..+.-|+|+|..++|||+|+|.|+...+..... ..... .......+||-+-.....+.. .+..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 457889999999999999999887543110000 00000 011223356655444333322 2356999
Q ss_pred EeCCCCCC
Q 006610 124 VDTPGHAD 131 (639)
Q Consensus 124 IDTPGh~d 131 (639)
+||.|..|
T Consensus 145 lDTEG~~d 152 (457)
T 4ido_A 145 MDTQGTFD 152 (457)
T ss_dssp EEECCBTC
T ss_pred EeccCCCC
Confidence 99999655
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.59 E-value=0.074 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|+|.+||||||+.+.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 46999999999999999999 6544
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.57 E-value=0.079 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+.|+|+|..|+|||||+.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 567999999999999999999875
No 313
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.46 E-value=0.1 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.+++.|.|++|+|||||+.++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998763
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.40 E-value=0.051 Score=53.54 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46999999999999999999754
No 315
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.34 E-value=0.087 Score=50.04 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
..+|+|+|.+|+||||+...|....+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999887653
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.26 E-value=0.043 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..|+|+|.+|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999876
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.25 E-value=0.081 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.+.|+|+|++|+|||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3569999999999999999998764
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.20 E-value=0.081 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++|+|++|+|||||++.|...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 35899999999999999999864
No 319
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.16 E-value=0.057 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999754
No 320
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=92.16 E-value=0.38 Score=53.19 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=73.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecc---cceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEE
Q 006610 241 MSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFY---LGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLM 317 (639)
Q Consensus 241 l~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~d~~---~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~ 317 (639)
++++-+++...++ |.....-.-.+.|-+++..+. .|.++-++|..|+++.|..+.+.+.+. .....+|.+|.
T Consensus 427 ~~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~----~i~~g~i~slk 501 (537)
T 3izy_P 427 IEDLQEELSSRLP-CIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGH----VIWKGSLISLK 501 (537)
T ss_dssp HHHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSS----EEEEEECCCCC
T ss_pred HHHHHHHHHhccC-CceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCE----EEEEEEEehhc
Confidence 3555555544444 444444445666777766553 578999999999999999999997421 24566777776
Q ss_pred eeeCCceeeeccCCCCceEEe--cC-CCCCCcCCeee
Q 006610 318 KKKGTGMVLIDSAGAGDIISV--AG-MTKPSIGHTVA 351 (639)
Q Consensus 318 ~~~g~~~~~v~~a~aGdIv~i--~g-l~~~~~Gdtl~ 351 (639)
.+. .++.++..|.-|+| .+ +.+++.||+|-
T Consensus 502 ~~k----~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie 534 (537)
T 3izy_P 502 HHK----DDTSVVKTGMDCGLSLDEEKIEFKVGDAII 534 (537)
T ss_dssp CSS----CCCSEEETTCEEEEESSSSCSSCSCCCEEE
T ss_pred ccC----cccceEcCCCEEEEEEcCcccCCCCCCEEE
Confidence 553 58999999999987 46 77899999984
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.07 E-value=0.095 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+.|+|+|.+|+|||||++.|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988755
No 322
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.07 E-value=0.36 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.++.|.|++|+|||||+.+|....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999998764
No 323
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.04 E-value=0.072 Score=52.71 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999865
No 324
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.03 E-value=0.19 Score=48.44 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
+|.|+|++||||+|+...|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999987653
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.01 E-value=0.12 Score=48.39 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..+|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.84 E-value=0.077 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.074 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 327
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.84 E-value=0.1 Score=48.62 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
.++|+++|.+|+||||+...|....|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999887653
No 328
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.84 E-value=2.3 Score=44.00 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=33.4
Q ss_pred cEEEEEEeCCCCCchhHHHHHHHHHHcCCCc-EEEEcCCCC
Q 006610 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (639)
Q Consensus 144 D~allVVDa~~g~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (639)
+++++|.-+..-....+++.+..+.+.|+|+ -+|+|++.-
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 4788888877666778889999999999997 489999874
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.83 E-value=0.098 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|+|++|||||||++.|....|
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999996654
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.82 E-value=0.092 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999875
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.80 E-value=0.091 Score=49.96 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.++|+|+.|+|||||+..|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999988753
No 332
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.79 E-value=0.1 Score=50.36 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|+|++||||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987644
No 333
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.68 E-value=0.093 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..++|+|++|+|||||++.|++.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 357999999999999999999976
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.66 E-value=0.077 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.66 E-value=0.21 Score=49.72 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|+|+|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 336
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.63 E-value=0.076 Score=52.37 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999754
No 337
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.61 E-value=0.084 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 338
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.59 E-value=0.073 Score=53.38 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999754
No 339
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.56 E-value=0.11 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|+|.+|+||||++..|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 699999999999999999988654
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.55 E-value=0.11 Score=49.40 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+|+|+|.+|+||||+.+.|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 3699999999999999999987 44
No 341
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.54 E-value=0.092 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..+++|+|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 342
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.53 E-value=0.073 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999754
No 343
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.49 E-value=0.082 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999765
No 344
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.49 E-value=0.11 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLR 82 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (639)
..|+|+|.+|+||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999987
No 345
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.47 E-value=0.076 Score=53.70 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999764
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.45 E-value=0.13 Score=48.90 Aligned_cols=25 Identities=24% Similarity=0.060 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...|+|+|.+|+|||||...|....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999988763
No 347
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.45 E-value=0.073 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999764
No 348
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.43 E-value=0.079 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.++|+|+.|+|||||++.|.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 349
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.43 E-value=0.15 Score=49.62 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+.+.|.|+|++||||+|+...|....|
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3457789999999999999999988765
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.42 E-value=0.15 Score=47.40 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+.|+|+|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999987654
No 351
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.37 E-value=0.51 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
--+.|.|.+|+|||||+-.+...
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 35899999999999999888765
No 352
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.35 E-value=0.079 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.34 E-value=0.13 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.096 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
....|+|+|++|||||||++.|...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4567999999999999999999875
No 354
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.34 E-value=0.085 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 355
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.30 E-value=0.13 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|.|+|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999998754
No 356
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.29 E-value=0.25 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999875
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.24 E-value=0.12 Score=48.02 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|.|.+|+||||+++.|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999987643
No 358
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.19 E-value=0.089 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46999999999999999999764
No 359
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.17 E-value=0.1 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 360
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.10 E-value=0.74 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.|+|+|+.|||||||+++|++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999875
No 361
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.09 E-value=0.088 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 46899999999999999999754
No 362
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.02 E-value=0.12 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|++|+|||||+..|+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 363
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.98 E-value=0.11 Score=50.58 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLR 82 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (639)
-.++|+|+.|+|||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999999883
No 364
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.96 E-value=0.092 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999764
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.95 E-value=0.15 Score=47.54 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
...|+|+|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999987644
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.95 E-value=0.15 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...|+|+|.+|+|||||++.|....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998753
No 367
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.94 E-value=0.093 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999754
No 368
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.85 E-value=0.12 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLR 82 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (639)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 369
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.83 E-value=0.73 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
..+|.|.|++|+|||+|+.++....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997763
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.81 E-value=0.16 Score=50.01 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
...|+|+|+.|||||||++.|....|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999987643
No 371
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.80 E-value=0.13 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|+|.+|+||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999987755
No 372
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.72 E-value=0.1 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 373
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.72 E-value=0.42 Score=42.79 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+|.|.|.+|+|||+|+.++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999765
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.72 E-value=0.15 Score=48.84 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|+|.+||||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987655
No 375
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.71 E-value=0.15 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+++|.+||||||+...|....+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 376
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.68 E-value=0.099 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999999754
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.64 E-value=0.16 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987654
No 378
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.64 E-value=0.17 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999876
No 379
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.63 E-value=0.11 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999764
No 380
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.60 E-value=0.087 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=16.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHH-HH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLL-RQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll-~~ 83 (639)
-..|+|+|+.|||||||++.|. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998 65
No 381
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.57 E-value=0.16 Score=47.23 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|.|.+|+||||+.+.|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987544
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.57 E-value=0.1 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 383
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.56 E-value=0.17 Score=47.19 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|+|.+|+||||+...|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 384
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.54 E-value=0.18 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+.|+|+|.+|+||||+...|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987654
No 385
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.47 E-value=0.88 Score=47.25 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+++.|.|++|+|||||+..+....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998774
No 386
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.46 E-value=0.18 Score=52.05 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
....-|+|+|++|||||||++.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998765
No 387
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.45 E-value=0.16 Score=56.03 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=27.4
Q ss_pred ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCC
Q 006610 143 VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (639)
Q Consensus 143 aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (639)
..+-.+|+|++.+-...-..+...+.+.+.+++++--.+|
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~ 156 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCD 156 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 3567889999887666666666777778887665533333
No 388
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.33 E-value=0.2 Score=51.03 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+...|+|+|.+|+|||||++.|...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998765
No 389
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.33 E-value=1.3 Score=43.82 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCC-----Cc-hHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCC
Q 006610 118 ENELNMVDTPGHA-----DF-GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVD 182 (639)
Q Consensus 118 ~~~i~iIDTPGh~-----dF-~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD 182 (639)
.+.+.|||.||-. +. .....-+-....-+|||+|+..|...++...++.+...++++. +|+||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 5789999999732 11 1112223334567999999988877777777777788899875 7899985
No 390
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.31 E-value=0.13 Score=46.69 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..++|+|++|+|||||+..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.31 E-value=0.2 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
...|+|+|+.|||||||++.|....|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999986644
No 392
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.25 E-value=0.69 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..+++.|.|++|+|||||+..+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 393
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.23 E-value=0.19 Score=49.67 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+...|+|.|.+||||||+.+.|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999977544
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.23 E-value=0.85 Score=47.12 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.+++|+|+.|+|||||++.|++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998763
No 395
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.11 E-value=0.21 Score=47.51 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|+|+|..|+|||||++.|...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 396
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.11 E-value=0.12 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+++|+|+.|+|||||++.|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999876
No 397
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.10 E-value=0.16 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
-.+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999987654
No 398
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.04 E-value=0.23 Score=46.95 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
...|+|+|.+|+||||+...|....+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987655
No 399
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.89 E-value=0.23 Score=48.52 Aligned_cols=40 Identities=10% Similarity=-0.125 Sum_probs=26.0
Q ss_pred EEEEEEeCCCCCchhHHHHHHHHHHcCCCcEEEEcCCCCC
Q 006610 145 GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (639)
Q Consensus 145 ~allVVDa~~g~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (639)
.-+++||-..-......+.+..+...++++|++.-..|-.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 4577888544343344445566556799999988887753
No 400
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.85 E-value=0.21 Score=47.21 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999987644
No 401
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.81 E-value=0.22 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|+|.|.+|+||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999865
No 402
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.79 E-value=0.14 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999765
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.79 E-value=0.21 Score=45.74 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
..-||+|.|.+||||||+...|....|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999876553
No 404
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.74 E-value=0.098 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|++.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 47999999999999999999764
No 405
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.72 E-value=0.15 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
..+++|+|+.|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998873
No 406
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.72 E-value=0.21 Score=51.08 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+...|+|+|+.|||||||++.|...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999875
No 407
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.72 E-value=0.16 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+-..|+|.|..|||||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998765
No 408
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.72 E-value=0.15 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 46899999999999999999864
No 409
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.70 E-value=0.21 Score=46.90 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+.|+|+|.+|+||||+...|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988755
No 410
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.70 E-value=0.21 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
...|+|+|.+|+||||+...|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999987654
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.69 E-value=0.17 Score=46.91 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..|+|.|.+||||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987654
No 412
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.66 E-value=0.23 Score=47.82 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..+|+|+|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999987644
No 413
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.63 E-value=0.14 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999764
No 414
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.58 E-value=0.66 Score=43.51 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.++.|.|++|+|||+|+.++...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999875
No 415
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.57 E-value=0.23 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..|+|.|.+|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 416
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.56 E-value=0.19 Score=53.04 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
--.|+|+|+.|+|||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999875
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.54 E-value=0.16 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 36899999999999999999865
No 418
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.46 E-value=1 Score=49.41 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+.+.|.|++|+|||||+.++....+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999998754
No 419
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.45 E-value=0.25 Score=48.15 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..+|+|+|.+|+||||+...|....+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987643
No 420
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.45 E-value=1.4 Score=42.07 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=44.1
Q ss_pred CceEEEEeCCCCCCc--hH--HHHHHHhh-ccEEEEEEeCCCCCchhHHHHHHHHHHcCCCcE-EEEcCCCCC
Q 006610 118 ENELNMVDTPGHADF--GG--EVERVVGM-VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF--~~--ev~~~l~~-aD~allVVDa~~g~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (639)
.+.+.||||||...- .. ........ .+.+|+|+++..+...++...++.+...+++++ +|+|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 678999999975431 00 11112222 235888888866555666777777777788865 889999964
No 421
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.45 E-value=0.22 Score=48.01 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+|+|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987755
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.33 E-value=0.24 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987655
No 423
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.30 E-value=0.21 Score=45.67 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+.|+|.|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987655
No 424
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.30 E-value=1.3 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
++|.|.|++|+|||+|+.++....
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998763
No 425
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.19 E-value=0.26 Score=48.52 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
..+|+|+|.+||||||++..|....+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987644
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.18 E-value=0.21 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
++|+|+|.+|+||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35999999999999999999876553
No 427
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.14 E-value=0.18 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999865
No 428
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.10 E-value=0.27 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+++.|.|++|+|||||+.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 429
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.06 E-value=0.12 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-|+|.|..|+|||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 430
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.04 E-value=0.18 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 36899999999999999999865
No 431
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.99 E-value=0.26 Score=46.73 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...|+|.|.+|+||||+.+.|....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998653
No 432
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.93 E-value=0.27 Score=49.84 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+...|.|+|.+|+|||||+..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 433
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.93 E-value=0.19 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 46899999999999999999865
No 434
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.91 E-value=0.25 Score=49.04 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCGA 86 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (639)
..|+|+|.+|+|||||..+|....+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCC
Confidence 36899999999999999999887653
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.87 E-value=0.25 Score=47.34 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|.|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987654
No 436
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.83 E-value=0.19 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 36899999999999999999865
No 437
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.79 E-value=0.22 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..+.|.|++|+|||||+.+++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 438
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.74 E-value=0.17 Score=55.81 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+++|+|+.|||||||+++|+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999876
No 439
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.70 E-value=0.27 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.|+|.|.+||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998753
No 440
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.69 E-value=1.6 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++.|.|++|+|||||+..|.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999884
No 441
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.69 E-value=0.2 Score=52.83 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 46899999999999999999865
No 442
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.68 E-value=0.2 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 36899999999999999999865
No 443
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.66 E-value=0.25 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-.+|+|+.|+|||||+++|....
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998654
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.36 E-value=0.25 Score=49.11 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+|+|+|.+|+||||+.+.|....|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987655
No 445
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.31 E-value=0.27 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-|+|.|..||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999776
No 446
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.31 E-value=0.27 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+.++++|++|+|||||+++|.+..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 459999999999999999998863
No 447
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.28 E-value=0.3 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+.++|+|++|+|||||+.++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999876
No 448
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=88.26 E-value=0.8 Score=47.01 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=37.0
Q ss_pred CceEEEEeCCCCCCchHHHHHHHhhccEEEEEEeCCCCCchhHHHHHHHHHHc----CCCcE-EEEcCCCC
Q 006610 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRPI-LLLNKVDR 183 (639)
Q Consensus 118 ~~~i~iIDTPGh~dF~~ev~~~l~~aD~allVVDa~~g~~~qt~~~l~~~~~~----~lp~I-vviNKiD~ 183 (639)
.+.+.++|+|+-.....- ..++..||.+|+++.+..--......+++.+... +.++. +++|+.+.
T Consensus 163 ~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~ 232 (314)
T 3fwy_A 163 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 232 (314)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc
Confidence 578999999975433221 2357889999999976421111222333333332 33332 57787664
No 449
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.12 E-value=0.24 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..+.|.|++|+|||||+-+++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998865
No 450
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.09 E-value=0.35 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.048 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..|+|+|..|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998765
No 451
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.08 E-value=0.27 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-.|+|+|+.|||||||+++|+...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999999863
No 452
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.94 E-value=0.25 Score=54.12 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.-+.|.|.+|+|||||+-.++....
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHH
Confidence 4589999999999999999887643
No 453
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.91 E-value=0.99 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..||.+.|.+|+||||++-++...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHH
Confidence 368999999999999997776654
No 454
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.88 E-value=0.32 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++|+|++|+|||||+..|+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999854
No 455
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.88 E-value=0.17 Score=52.82 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 36899999999999999999865
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.84 E-value=0.32 Score=46.64 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLR 82 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (639)
..|+|.|..||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 457
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.58 E-value=0.25 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 46999999999999999999764
No 458
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.21 E-value=0.92 Score=45.67 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...++.|.|++|+|||+|+.++....
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999887663
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=87.17 E-value=0.41 Score=45.50 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.....|+|+|.+||||||+.+.|....|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999987645
No 460
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.13 E-value=0.37 Score=46.56 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+|+|.|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987644
No 461
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.98 E-value=0.38 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+|+|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 462
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.97 E-value=0.26 Score=50.67 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.-+.|.|.+|+|||||+-.+....
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988653
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.92 E-value=0.34 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+++.|.|++|+|||||+.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999876
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.91 E-value=0.41 Score=47.02 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
...|+|.|++|+||||+.+.|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987655
No 465
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.89 E-value=0.38 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+.++|+|++|+|||||+.+|....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 459999999999999999998873
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.86 E-value=0.45 Score=46.37 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+...|+|+|..|+||||+...|....|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987655
No 467
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=86.82 E-value=0.17 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|||||||++.|.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46899999999999999999865
No 468
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=86.75 E-value=0.45 Score=45.46 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
...|+|+|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998765
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.64 E-value=0.35 Score=50.83 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-++|+|+.|+|||||++++....
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36699999999999999998653
No 470
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.63 E-value=2.6 Score=43.27 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.+.|.|++|+|||||+-+++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999998887755
No 471
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.55 E-value=0.47 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLR 82 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~ 82 (639)
+...|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999973
No 472
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.53 E-value=0.4 Score=49.52 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+++|+|++|+|||||+..+.+..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999998743
No 473
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.42 E-value=0.36 Score=52.12 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
--+.|.|.+|+|||||+-.+....
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Confidence 468999999999999998887653
No 474
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=86.40 E-value=0.34 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46999999999999999999875
No 475
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.39 E-value=0.24 Score=49.19 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
+...|+|.|..|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998765
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.39 E-value=0.4 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999987
No 477
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.37 E-value=0.44 Score=44.89 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
+++.|.|++|+|||||+.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 478
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.25 E-value=0.44 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.+.|.|.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998763
No 479
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.13 E-value=0.39 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-+.+.|.|.+|+|||||+-+|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998865
No 480
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.11 E-value=0.38 Score=52.49 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
-.++|+|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998753
No 481
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.08 E-value=0.4 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
.-++|+|++|+|||||+..|+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999998875
No 482
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=85.79 E-value=0.5 Score=37.61 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=45.0
Q ss_pred cchHHHHhhccceEEeeeeccc-CCEEEEEEEeccccccchhhhccccceeceEe
Q 006610 469 LSLCIWYLSSLRFCFRLTRNMW-GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFM 522 (639)
Q Consensus 469 ~g~v~~~l~~Rrg~~~~~~~~~-~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~ 522 (639)
.|.|...|....+.+ .+.+ +..+.+...+|....-.|...|..+|+|+..+
T Consensus 19 ~g~v~~~L~~~~~~I---~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 19 ITGILWLLGQVDGKI---INSDVQAFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp HHHHHHHHHHTTCEE---EEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHHHCCCEE---EcccccCeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 999999999999999 7777 77799999999999999999999999998755
No 483
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=85.73 E-value=2.2 Score=43.64 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
.+.|.+.|++|+|||+|+.++....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4789999999999999999999873
No 484
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.72 E-value=0.61 Score=45.45 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+...|+|.|.+|+||||+++.|.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356799999999999999999987643
No 485
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.66 E-value=0.5 Score=44.50 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.|+|.|.+|+||||+.+.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999987655
No 486
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.40 E-value=2.7 Score=43.01 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..+.|.|++|+|||||+.++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 357999999999999999999876
No 487
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.38 E-value=2.2 Score=41.93 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
.+|.|.|.+|+|||+|+.++.....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 5799999999999999999987643
No 488
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=85.12 E-value=0.49 Score=45.76 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
..++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.85 E-value=0.62 Score=49.18 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...++|+|++|+|||||+..|....
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4589999999999999999998763
No 490
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.83 E-value=0.52 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999987
No 491
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.62 E-value=0.51 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..+.|.|.+|+|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 346889999999999999998865
No 492
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.60 E-value=2.1 Score=41.14 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.-|+|.|..|+||||+++.|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999765
No 493
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.56 E-value=0.44 Score=53.27 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
--.++|+|+.|+|||||++.|++.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999875
No 494
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.55 E-value=5.3 Score=41.23 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-..+.|.|++|+|||||+..+...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.33 E-value=0.49 Score=52.46 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Q 006610 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
--.++|+|+.|+|||||++.|.+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999875
No 496
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.24 E-value=0.41 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Q 006610 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (639)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (639)
-.++|+|+.|+|||||++.|++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 47999999999999999999765
No 497
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.94 E-value=2 Score=54.46 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcC
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (639)
+-++|.|.|++|+|||+|+-++...+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987643
No 498
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=83.89 E-value=3.9 Score=45.69 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=60.3
Q ss_pred CCceeEEE--eeeeecccceEEEEEEEeeeeecCCEEEEeeccCCCCceeEEeEEEEEEeeeCCceeeeccCCCCceEEe
Q 006610 261 APFQMLVT--MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338 (639)
Q Consensus 261 ~p~~~~V~--~~~~d~~~G~i~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~~kV~~l~~~~g~~~~~v~~a~aGdIv~i 338 (639)
.|..+.|. .++..+. |.|+-.+|..|+++.|..|.+ +. + ....+|.+|..+. .+++++.+|.-|+|
T Consensus 462 ~~~~~~i~~~~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~---~---~~~g~i~sl~~~k----~~v~~~~~g~e~gi 529 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DD---G---ETVGTVESMQDKG----ENLKSASRGQKVAM 529 (594)
T ss_dssp CCEEEEEEEEEEEECSS-SEEEEEEEEEEEEETTCEEEC-TT---S---CEEEEEEEEEETT----EEESEEETTCCEEE
T ss_pred eeEEEEEecceEEcCCC-CeEEEEEEecCEEecCCeEEe-cC---C---cEEEEEehhcccC----ccccccCCCCEEEE
Confidence 34455433 3555444 799999999999999999987 32 1 2567888887753 68999999999987
Q ss_pred --cCC---CCCCcCCeeeec
Q 006610 339 --AGM---TKPSIGHTVANT 353 (639)
Q Consensus 339 --~gl---~~~~~Gdtl~~~ 353 (639)
.+. .++..||.|-..
T Consensus 530 ~~~~~~~~~~~~~~d~~~~~ 549 (594)
T 1g7s_A 530 AIKDAVYGKTIHEGDTLYVD 549 (594)
T ss_dssp EEETCCBTTTBCTTCEEEEC
T ss_pred EEeCcccCCCCCCCCEEEEE
Confidence 454 578899998654
No 499
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.71 E-value=0.85 Score=47.64 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
...+|+|+|.+|+|||||...|....
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999887653
No 500
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.56 E-value=0.82 Score=44.71 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCCHHHHHHHHHHHc
Q 006610 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (639)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (639)
..++|.|.|++|+|||+|+.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998763
Done!