BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006613
         (638 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
 pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
           The Inhibitor Y27632
          Length = 402

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 316 GAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKD 375
           GA   G+ +   +KL++ +R   S +N+E   L  L  L  +     L  N++   +   
Sbjct: 1   GASGDGAGASRQRKLEALIRDPRSPINVES-LLDGLNSLVLDLDFPALRKNKNIDNFLNR 59

Query: 376 ISRLIRQIRGLKDNVRTKASELVKIL 401
             +++++IRGL+  ++ +  ++VK++
Sbjct: 60  YEKIVKKIRGLQ--MKAEDYDVVKVI 83


>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
           Complex
 pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
           Complex
 pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
           Syntaxin4 N- Peptide Complex
 pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
           Syntaxin4 N- Peptide Complex
          Length = 592

 Score = 29.3 bits (64), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 488 REEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIY 547
           +E + KI  L+ + ++L S       L++  I  ++N +  +E      R + AL     
Sbjct: 28  KEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREP----VRQMKALYFISP 83

Query: 548 TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKA 588
           T  +++ FL+  G    KKYK+ +    D   D+  N +KA
Sbjct: 84  TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIKA 124


>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
           Bacillus Subtilis Seca
 pdb|3DL8|H Chain H, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
           Bacillus Subtilis Seca
          Length = 429

 Score = 28.9 bits (63), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 486 GYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPAN 545
           G R     ++ LE  ++RL  +  L+ ++I   IP + +       W  +  +     A 
Sbjct: 349 GVRPGQDTVKYLERIINRLIFFGALFLSVIAL-IPILISV------WFNIPFYFGGTTAL 401

Query: 546 IYTAVALNAFLQLAGFALFKKYKSQFRK 573
           I   VAL+ F Q+  + + KKYKS  R+
Sbjct: 402 IVVGVALDTFRQIETYLIQKKYKSYVRR 429


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,678,467
Number of Sequences: 62578
Number of extensions: 497441
Number of successful extensions: 1016
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 11
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)