BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006613
(638 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RAS2|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1
Length = 698
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 104/186 (55%), Gaps = 16/186 (8%)
Query: 436 YVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED 491
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+ +D
Sbjct: 500 FPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVKD 557
Query: 492 GKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANIY 547
K+E +N+L R+ +RLYAA+IQ P + HGL GW WLA+ LN P +
Sbjct: 558 SKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSDV 617
Query: 548 TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIED 607
TA L FL++ G AL K+Y+ QF K+L I +++ ++A S ++ +I
Sbjct: 618 TATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIRL 671
Query: 608 KKFLEE 613
K+FLE+
Sbjct: 672 KQFLEK 677
>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2
Length = 698
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 16/187 (8%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVK 556
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 546
D K+E +N+L R+ +RLYAA+IQ P + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSD 616
Query: 547 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 606
TA L FL++ G AL K+Y+ QF K+L I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 607 DKKFLEE 613
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q4KLN4|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1
Length = 698
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 16/187 (8%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V D++L H+ C Y+VP + F E E Y + +GY+
Sbjct: 499 AFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFYPAFKEGM--PLEDYQRMLGYQVT 556
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQTEIP-GVQ---NAHGLKEGWAWLARFLNALPANI 546
D K+E +N+L R+ +RLYAA+IQ + P G + + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLQWPYGSRQEAHPHGLNHGWRWLAQILNMEPLSD 616
Query: 547 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 606
TA L FL++ G AL K+Y+ QF K++ I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMILLIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 607 DKKFLEE 613
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q8R322|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2
Length = 699
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 104/187 (55%), Gaps = 16/187 (8%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V D++L H+ C Y+VP + F E + E Y + +GY+
Sbjct: 500 AFPIAVVASGIWMLHPKVGDLILAHLHKKCPYSVPFYPAFKEGM--ALEDYQRMLGYQVT 557
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 546
D K+E +N+L R+ +RLYAA+IQ + P + HGL GW WLA+ LN P +
Sbjct: 558 DSKVEQQDNFLKRMSGMIRLYAAIIQLQWPYGNRQEAHPHGLNHGWRWLAQVLNMEPLSD 617
Query: 547 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 606
TA L FL++ G AL K+Y+ QF K++ I +++ ++A S ++ +I
Sbjct: 618 VTATLLFDFLEVCGNALMKQYQVQFWKMILLIKEDYFPRIEAITSS------GQMGSFIR 671
Query: 607 DKKFLEE 613
K+FLE+
Sbjct: 672 LKQFLEK 678
>sp|Q3ZBK7|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1
Length = 698
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 16/187 (8%)
Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
+ I +VAS + P+V ++L H+ C Y+VP + F E + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGALILAHLHKKCPYSVPFYPAFKEGM--ALEDYQRMLGYQVK 556
Query: 491 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 546
D K+E +N+L R+ +RLYAA+IQ P + HGL GW WLA+ LN P +
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQETHPHGLNHGWRWLAQILNMEPLSD 616
Query: 547 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 606
TA L FL++ G AL K+Y+ QF K++ I +++ ++A S ++ +I
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMILLIKEDYFPRIEAITSS------GQMGSFIR 670
Query: 607 DKKFLEE 613
K+FLE+
Sbjct: 671 LKQFLEK 677
>sp|Q6DRB1|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2
Length = 695
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 407 PQSISLATF--SKKVVSRCE---TPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACI 461
PQ + A++ ++K V + E + + A G V + P++ D++L H+ C
Sbjct: 490 PQGLEFASYRLAEKFVKQGEEEVASNHSAAFPIGAVASGIWELHPKIGDLILAHLHKKCP 549
Query: 462 YTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIP- 520
Y VP + S E Y K +GYR ++GK+E +++L R+ +RLYAA+IQ P
Sbjct: 550 YAVPHYPPMESGT--SVEDYQKILGYRVDEGKVEGQDSFLKRMSGMIRLYAAIIQMRWPY 607
Query: 521 ----GVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILD 576
G+ + HG+ GW W+A+ LN P TA L FL++ G AL K+Y+ QF K++
Sbjct: 608 SSKQGL-HLHGMNHGWRWMAQILNMEPLADITATILFDFLEVCGNALMKQYRVQFWKLIL 666
Query: 577 NIYDNFL 583
I + +
Sbjct: 667 IINEEYF 673
>sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1
Length = 677
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 398 VKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLG 454
+ I ++PL + + +KK VS+ ET + A VI+ +P + L
Sbjct: 448 ITINDHPLA-RDYCMLLMAKKFVSQTETAICSNPQAAFPFASVIITFWKLLPDFGKVFLA 506
Query: 455 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREED-GKIESLENYLSRLKSYMRLYAA 513
++ + VP V + ++ E Y KTIGYR D ++E + YL R RLYAA
Sbjct: 507 YMYKESPFLVP--YVIPQQQGQTPEQYLKTIGYRLTDKNELEKPDIYLKRQTGLARLYAA 564
Query: 514 LIQTE---IPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQ 570
+I ++ G L EGW WLA ++ P +A + LQ GF L++ Y Q
Sbjct: 565 VIISQGRKAAGPDECFELNEGWLWLAHMVHVKPLPDISATLIMEILQTLGFELWRTYGKQ 624
Query: 571 FRKILDNIYDNFLNALKARED----SKLNLVIAEI 601
F K+L I + ++ L A ++ ++L +++A+
Sbjct: 625 FVKLLVYIQNIYMPQLAAYDEGGPKTRLEMLLAKF 659
>sp|Q8CDI7|CC150_MOUSE Coiled-coil domain-containing protein 150 OS=Mus musculus
GN=Ccdc150 PE=2 SV=2
Length = 1110
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 20/122 (16%)
Query: 170 QSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSD 229
Q S + ++K D+ RE +RK +A +L+ A+Q + L+S++ D
Sbjct: 764 QHGSEIEPLQKSLDITREDNRK--------LAMSLEQ---ALQTNGHLQSKL-------D 805
Query: 230 AAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAE--EAKRAALEAEKRAAKEAAEREA 287
E+ + KER Q + +E+V E++++A+L AE EA R + E+ AK+A++RE
Sbjct: 806 HLQEKLESKERERQSLEAFKEQVAEESKVEAELHAERIEALRKQFQTERETAKKASQREV 865
Query: 288 AE 289
+E
Sbjct: 866 SE 867
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,688,254
Number of Sequences: 539616
Number of extensions: 8468852
Number of successful extensions: 56620
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 2700
Number of HSP's that attempted gapping in prelim test: 40601
Number of HSP's gapped (non-prelim): 9308
length of query: 638
length of database: 191,569,459
effective HSP length: 124
effective length of query: 514
effective length of database: 124,657,075
effective search space: 64073736550
effective search space used: 64073736550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)