Query 006613
Match_columns 638
No_of_seqs 154 out of 201
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 11:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2412 Nuclear-export-signal 100.0 1.1E-98 2E-103 808.0 40.6 566 1-615 1-588 (591)
2 PF07817 GLE1: GLE1-like prote 100.0 8.4E-61 1.8E-65 486.2 17.4 229 351-581 5-256 (256)
3 PTZ00121 MAEBL; Provisional 97.4 0.0031 6.8E-08 77.0 15.8 20 184-203 1114-1133(2084)
4 PTZ00121 MAEBL; Provisional 97.4 0.017 3.7E-07 70.9 21.2 13 504-516 1800-1812(2084)
5 KOG2412 Nuclear-export-signal 97.3 0.0026 5.6E-08 71.6 13.4 68 214-288 217-284 (591)
6 KOG1029 Endocytic adaptor prot 97.0 0.034 7.4E-07 65.1 17.7 39 148-190 324-362 (1118)
7 KOG0163 Myosin class VI heavy 96.6 0.053 1.1E-06 63.5 16.1 54 228-281 930-984 (1259)
8 PF02854 MIF4G: MIF4G domain; 96.2 0.1 2.3E-06 49.5 13.1 174 374-583 2-184 (209)
9 KOG0163 Myosin class VI heavy 96.1 0.37 8E-06 56.8 18.6 13 482-494 1168-1180(1259)
10 COG3064 TolA Membrane protein 96.0 0.95 2.1E-05 48.9 20.0 13 126-138 48-60 (387)
11 PRK09510 tolA cell envelope in 95.9 3.1 6.8E-05 46.2 24.4 13 126-138 48-60 (387)
12 PRK09510 tolA cell envelope in 95.8 0.53 1.2E-05 52.1 18.0 9 130-138 56-64 (387)
13 COG3064 TolA Membrane protein 95.8 0.65 1.4E-05 50.1 17.8 25 457-493 325-349 (387)
14 PTZ00266 NIMA-related protein 95.8 0.11 2.3E-06 63.5 13.7 10 25-34 227-236 (1021)
15 KOG1029 Endocytic adaptor prot 95.0 0.26 5.7E-06 58.1 12.7 15 176-190 317-331 (1118)
16 PTZ00266 NIMA-related protein 94.9 0.31 6.8E-06 59.6 13.6 13 178-190 440-452 (1021)
17 smart00543 MIF4G Middle domain 94.3 1.3 2.7E-05 42.3 13.7 168 374-583 2-175 (200)
18 PF09726 Macoilin: Transmembra 92.2 4.5 9.8E-05 48.1 16.7 66 334-402 592-657 (697)
19 KOG1144 Translation initiation 91.7 0.96 2.1E-05 53.7 10.1 70 434-515 566-646 (1064)
20 PF05262 Borrelia_P83: Borreli 91.4 4.3 9.3E-05 46.4 14.7 53 66-136 47-101 (489)
21 KOG0742 AAA+-type ATPase [Post 91.1 17 0.00036 41.5 18.4 62 137-198 84-146 (630)
22 KOG2140 Uncharacterized conser 90.3 0.44 9.6E-06 54.4 5.6 168 350-569 140-312 (739)
23 KOG4364 Chromatin assembly fac 89.9 6.4 0.00014 46.4 14.4 22 612-633 769-793 (811)
24 KOG3054 Uncharacterized conser 87.6 3.7 8E-05 43.2 9.5 18 264-281 158-175 (299)
25 COG4942 Membrane-bound metallo 87.4 42 0.00092 38.0 18.3 25 233-257 222-246 (420)
26 PF05262 Borrelia_P83: Borreli 86.1 28 0.00062 40.0 16.4 8 70-77 155-162 (489)
27 PF05672 MAP7: MAP7 (E-MAP-115 85.7 40 0.00087 33.9 15.3 25 241-265 100-124 (171)
28 KOG1144 Translation initiation 84.3 4.5 9.7E-05 48.4 9.2 49 216-265 231-279 (1064)
29 KOG2002 TPR-containing nuclear 82.9 19 0.00041 44.2 13.7 14 148-161 773-786 (1018)
30 KOG2072 Translation initiation 80.5 87 0.0019 38.4 17.7 11 127-137 689-699 (988)
31 COG2268 Uncharacterized protei 80.5 1.2E+02 0.0025 35.7 18.4 13 310-322 482-494 (548)
32 PF09726 Macoilin: Transmembra 80.2 53 0.0012 39.4 16.2 15 388-402 597-611 (697)
33 COG4942 Membrane-bound metallo 80.1 1.1E+02 0.0025 34.7 20.6 6 509-514 400-405 (420)
34 KOG4364 Chromatin assembly fac 79.9 29 0.00062 41.3 13.3 21 237-257 311-331 (811)
35 COG5269 ZUO1 Ribosome-associat 77.4 23 0.0005 38.1 10.8 13 412-424 357-369 (379)
36 PF12037 DUF3523: Domain of un 76.8 1.1E+02 0.0025 32.9 19.9 22 126-147 27-50 (276)
37 KOG2891 Surface glycoprotein [ 76.7 25 0.00055 37.9 10.9 24 206-229 268-293 (445)
38 PF15236 CCDC66: Coiled-coil d 74.6 60 0.0013 32.2 12.2 10 126-135 33-42 (157)
39 PRK00247 putative inner membra 73.9 38 0.00082 38.4 12.0 8 9-16 125-132 (429)
40 PRK06231 F0F1 ATP synthase sub 73.5 1.1E+02 0.0024 31.1 14.7 14 192-205 101-114 (205)
41 KOG2002 TPR-containing nuclear 73.2 1.1E+02 0.0024 38.1 16.1 39 167-210 759-797 (1018)
42 PRK14475 F0F1 ATP synthase sub 72.9 96 0.0021 30.2 15.1 28 191-218 62-89 (167)
43 KOG3054 Uncharacterized conser 70.5 29 0.00064 36.8 9.4 12 412-423 262-273 (299)
44 PRK11637 AmiB activator; Provi 67.7 2.1E+02 0.0045 31.9 21.3 31 167-197 104-135 (428)
45 PLN03086 PRLI-interacting fact 65.8 30 0.00064 40.6 9.3 16 448-463 202-217 (567)
46 TIGR03321 alt_F1F0_F0_B altern 62.5 2E+02 0.0043 29.8 14.7 10 194-203 60-69 (246)
47 PRK14471 F0F1 ATP synthase sub 62.3 1.5E+02 0.0033 28.5 14.7 19 192-210 61-79 (164)
48 PTZ00491 major vault protein; 61.7 3.3E+02 0.0072 33.7 17.0 26 216-241 720-745 (850)
49 PF12037 DUF3523: Domain of un 61.4 2.4E+02 0.0052 30.5 18.9 25 137-161 52-76 (276)
50 PRK00106 hypothetical protein; 61.3 3.3E+02 0.0071 32.0 17.3 8 596-603 455-462 (535)
51 PF12128 DUF3584: Protein of u 61.2 4.5E+02 0.0098 33.6 34.5 34 327-360 773-806 (1201)
52 PF04747 DUF612: Protein of un 60.8 73 0.0016 35.8 10.6 41 213-253 84-125 (510)
53 PF15236 CCDC66: Coiled-coil d 59.2 2E+02 0.0042 28.7 14.0 21 189-209 52-72 (157)
54 PRK14472 F0F1 ATP synthase sub 58.5 1.9E+02 0.0041 28.3 14.7 12 193-204 72-83 (175)
55 KOG0742 AAA+-type ATPase [Post 58.0 3.6E+02 0.0077 31.4 17.3 60 558-617 470-540 (630)
56 PRK13428 F0F1 ATP synthase sub 56.5 2.8E+02 0.006 31.5 14.7 15 193-207 55-69 (445)
57 PF11600 CAF-1_p150: Chromatin 56.1 2.4E+02 0.0052 28.8 13.2 92 197-288 61-153 (216)
58 KOG4715 SWI/SNF-related matrix 55.3 1.1E+02 0.0024 33.8 10.5 75 197-281 237-316 (410)
59 PTZ00491 major vault protein; 54.1 1.3E+02 0.0029 36.9 12.1 26 213-238 675-700 (850)
60 KOG4691 Uncharacterized conser 53.9 2.7E+02 0.006 28.8 13.3 36 138-178 61-96 (227)
61 PRK14474 F0F1 ATP synthase sub 53.8 2.9E+02 0.0062 29.0 14.7 9 194-202 60-68 (250)
62 PF13904 DUF4207: Domain of un 53.5 3E+02 0.0064 29.1 15.4 19 233-251 180-198 (264)
63 CHL00118 atpG ATP synthase CF0 52.6 2.2E+02 0.0048 27.4 14.7 11 194-204 77-87 (156)
64 PRK02292 V-type ATP synthase s 52.5 1.7E+02 0.0037 28.7 10.9 23 485-507 149-173 (188)
65 PRK13428 F0F1 ATP synthase sub 51.0 2.7E+02 0.0058 31.7 13.4 19 386-404 176-194 (445)
66 CHL00019 atpF ATP synthase CF0 50.7 2.6E+02 0.0056 27.6 13.0 12 193-204 78-89 (184)
67 PF07946 DUF1682: Protein of u 49.8 51 0.0011 35.6 7.3 15 97-113 187-201 (321)
68 PRK06568 F0F1 ATP synthase sub 49.1 2.7E+02 0.0059 27.4 15.2 26 184-210 50-75 (154)
69 KOG2404 Fumarate reductase, fl 46.7 1.5E+02 0.0033 33.3 10.1 100 521-627 258-394 (477)
70 TIGR03319 YmdA_YtgF conserved 46.5 5.3E+02 0.012 30.0 17.8 12 441-452 306-317 (514)
71 KOG4661 Hsp27-ERE-TATA-binding 46.1 2.3E+02 0.0051 33.6 11.9 15 340-354 729-743 (940)
72 PF10168 Nup88: Nuclear pore c 45.8 6.4E+02 0.014 30.7 16.5 55 163-221 569-623 (717)
73 PRK13455 F0F1 ATP synthase sub 45.2 3.1E+02 0.0068 27.0 12.9 10 194-203 82-91 (184)
74 TIGR01069 mutS2 MutS2 family p 45.2 3.4E+02 0.0073 33.2 13.8 6 461-466 748-753 (771)
75 KOG3654 Uncharacterized CH dom 44.0 99 0.0021 36.0 8.5 32 451-488 616-648 (708)
76 KOG4661 Hsp27-ERE-TATA-binding 43.6 2.1E+02 0.0045 34.0 11.0 12 215-226 623-634 (940)
77 PF15346 ARGLU: Arginine and g 41.8 3.6E+02 0.0078 26.7 15.7 15 145-159 12-26 (149)
78 PRK07352 F0F1 ATP synthase sub 40.3 3.6E+02 0.0079 26.3 14.8 15 192-206 72-86 (174)
79 PRK13453 F0F1 ATP synthase sub 40.0 3.7E+02 0.0081 26.4 14.8 10 195-204 74-83 (173)
80 KOG2072 Translation initiation 39.7 8.5E+02 0.019 30.5 18.2 22 172-193 702-723 (988)
81 PF07349 DUF1478: Protein of u 38.8 28 0.0006 34.3 2.9 39 522-560 35-74 (162)
82 PF06637 PV-1: PV-1 protein (P 37.5 3.9E+02 0.0084 30.4 11.6 13 337-349 414-426 (442)
83 PF11208 DUF2992: Protein of u 37.0 1.4E+02 0.0031 28.7 7.4 11 209-219 89-99 (132)
84 PRK08475 F0F1 ATP synthase sub 36.0 4.3E+02 0.0093 25.9 13.0 8 195-202 78-85 (167)
85 cd03404 Band_7_HflK Band_7_Hfl 35.6 2.7E+02 0.006 28.6 9.8 6 26-31 28-33 (266)
86 PRK03963 V-type ATP synthase s 35.2 4.5E+02 0.0098 25.9 11.0 70 224-293 9-78 (198)
87 PF07046 CRA_rpt: Cytoplasmic 34.9 1.5E+02 0.0032 23.4 5.7 22 260-281 10-31 (42)
88 KOG0336 ATP-dependent RNA heli 34.9 36 0.00078 38.8 3.4 33 21-53 215-249 (629)
89 KOG2668 Flotillins [Intracellu 34.5 5.5E+02 0.012 29.0 12.1 21 184-204 215-235 (428)
90 KOG3540 Beta amyloid precursor 33.7 3.8E+02 0.0082 31.4 11.0 88 331-418 347-443 (615)
91 PF06936 Selenoprotein_S: Sele 33.4 3.1E+02 0.0067 28.0 9.4 6 233-238 86-91 (190)
92 KOG2141 Protein involved in hi 33.1 2.5E+02 0.0055 34.2 9.9 171 365-571 312-483 (822)
93 COG1196 Smc Chromosome segrega 31.7 1.2E+03 0.026 29.8 23.5 8 38-45 53-60 (1163)
94 KOG2441 mRNA splicing factor/p 31.1 3.2E+02 0.007 31.2 9.7 45 284-328 359-403 (506)
95 KOG2891 Surface glycoprotein [ 31.0 7.5E+02 0.016 27.2 14.2 16 216-231 335-350 (445)
96 TIGR03738 PRTRC_C PRTRC system 30.1 33 0.00071 29.5 1.7 19 15-33 12-31 (66)
97 COG5269 ZUO1 Ribosome-associat 30.0 5.2E+02 0.011 28.3 10.7 6 213-218 228-233 (379)
98 PRK09173 F0F1 ATP synthase sub 29.9 5E+02 0.011 24.8 15.1 14 192-205 55-68 (159)
99 PRK13460 F0F1 ATP synthase sub 29.7 5.4E+02 0.012 25.1 14.7 11 194-204 71-81 (173)
100 PRK14474 F0F1 ATP synthase sub 29.6 6.8E+02 0.015 26.3 13.1 6 498-503 235-240 (250)
101 KOG0612 Rho-associated, coiled 29.3 1.4E+03 0.03 29.8 22.7 15 68-82 353-367 (1317)
102 PF07046 CRA_rpt: Cytoplasmic 28.7 1.6E+02 0.0035 23.2 5.0 11 271-281 27-37 (42)
103 PF12128 DUF3584: Protein of u 28.4 1.4E+03 0.03 29.4 23.6 25 335-359 767-791 (1201)
104 cd03401 Band_7_prohibitin Band 27.9 1.3E+02 0.0029 29.2 5.8 6 152-157 101-106 (196)
105 PF06991 Prp19_bind: Splicing 27.9 5.1E+02 0.011 27.9 10.4 14 112-125 26-39 (276)
106 PRK09174 F0F1 ATP synthase sub 27.8 6.7E+02 0.015 25.6 14.9 15 192-206 106-120 (204)
107 PRK08404 V-type ATP synthase s 27.7 4.8E+02 0.01 23.9 10.7 22 260-281 59-80 (103)
108 PRK07353 F0F1 ATP synthase sub 27.5 5E+02 0.011 24.1 12.9 8 195-202 61-68 (140)
109 KOG4722 Zn-finger protein [Gen 27.0 1E+03 0.022 27.6 13.8 16 205-220 372-387 (672)
110 PF14454 Prok_Ub: Prokaryotic 26.1 43 0.00093 28.7 1.7 20 15-34 13-33 (65)
111 KOG1363 Predicted regulator of 25.6 3.3E+02 0.0071 31.4 9.0 14 175-189 261-274 (460)
112 PRK14473 F0F1 ATP synthase sub 25.3 6.2E+02 0.013 24.4 14.7 11 194-204 63-73 (164)
113 PF07271 Cytadhesin_P30: Cytad 25.3 1E+02 0.0022 33.2 4.5 17 235-251 95-111 (279)
114 PRK01005 V-type ATP synthase s 25.2 7.6E+02 0.017 25.4 13.1 13 251-263 68-80 (207)
115 PF00769 ERM: Ezrin/radixin/mo 24.7 8.3E+02 0.018 25.6 14.4 113 179-293 1-115 (246)
116 smart00582 RPR domain present 24.3 3.9E+02 0.0085 24.0 7.8 50 534-583 37-87 (121)
117 KOG0994 Extracellular matrix g 23.9 1.8E+03 0.038 29.2 18.2 196 162-400 1514-1715(1758)
118 KOG4691 Uncharacterized conser 23.7 8.5E+02 0.018 25.4 12.0 8 132-139 41-48 (227)
119 KOG3654 Uncharacterized CH dom 23.6 5.1E+02 0.011 30.5 9.8 12 100-111 343-354 (708)
120 KOG2357 Uncharacterized conser 23.4 3.4E+02 0.0073 31.1 8.3 13 121-134 304-316 (440)
121 KOG1087 Cytosolic sorting prot 22.9 4.8E+02 0.01 30.2 9.7 39 526-564 34-74 (470)
122 KOG2689 Predicted ubiquitin re 22.8 1E+03 0.022 26.0 13.1 20 220-239 117-136 (290)
123 PF02731 SKIP_SNW: SKIP/SNW do 22.7 3.1E+02 0.0066 27.5 7.0 10 241-250 141-150 (158)
124 KOG0161 Myosin class II heavy 22.0 2.2E+03 0.048 29.6 22.2 20 569-588 1771-1790(1930)
125 PLN02316 synthase/transferase 21.8 2.6E+02 0.0057 35.3 7.8 16 501-516 689-704 (1036)
126 PF11207 DUF2989: Protein of u 20.9 1.3E+02 0.0028 31.1 4.3 109 438-553 11-145 (203)
127 PF15346 ARGLU: Arginine and g 20.7 8.4E+02 0.018 24.2 12.6 23 183-205 43-65 (149)
128 TIGR01933 hflK HflK protein. H 20.6 7.5E+02 0.016 25.4 9.8 6 70-75 31-36 (261)
129 PF02318 FYVE_2: FYVE-type zin 20.2 2.3E+02 0.005 26.2 5.4 21 207-228 11-31 (118)
No 1
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=100.00 E-value=1.1e-98 Score=808.03 Aligned_cols=566 Identities=36% Similarity=0.550 Sum_probs=482.7
Q ss_pred CCccccccCCCCccCccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccccceEEEecccc
Q 006613 1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE 79 (638)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~ 79 (638)
|| +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+. ++++..|||.|++|+
T Consensus 1 e~-~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d-------~~~~~~~~~~~~e~e 72 (591)
T KOG2412|consen 1 EG-IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRD-------GRRGGGFVMHVSEDE 72 (591)
T ss_pred CC-CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHh-------hhccCCccchhHHHH
Confidence 56 789999999999999999999999999999999999999999 999999887776 678999999999999
Q ss_pred ccccc-----cccccccccCccccccceecccccccCCCCCccccccCCcc-ccccccccchhhhhHhhhhhccccHHHH
Q 006613 80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI 153 (638)
Q Consensus 80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~e~~~~~~~~~~e~~ 153 (638)
++++. +...++.+++.+++|++|+|+.||++|.++++ +++++ +.|++.++..+. .++|++.+..++
T Consensus 73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~ 144 (591)
T KOG2412|consen 73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI 144 (591)
T ss_pred HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence 98765 55678899999999999999999999988777 77788 888899998887 589999999999
Q ss_pred HHHHHHHHHHHHh-HhhhhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHH
Q 006613 154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY 232 (638)
Q Consensus 154 r~~~~~~e~~~~~-e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~iae~~~~~~~~~~r~~e~~~q~~er~ir~~aa~ 232 (638)
|.++..+..-..+ ++.+..+....++++.++|.|+.+++ .++|++++..+|+|++.++|.++..+||.+|++++++..
T Consensus 145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr 223 (591)
T KOG2412|consen 145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR 223 (591)
T ss_pred hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999887765554 78888999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcc
Q 006613 233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSS 312 (638)
Q Consensus 233 eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (638)
+||.|++++.|||+.+++...++++++++.|++|+++ |.+.|++.++.+.+...- ++...+.+ .+.
T Consensus 224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq---eee~ke~e~~~~k~~q~~-~~~eek~a----------~qk 289 (591)
T KOG2412|consen 224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ---EEERKEAEEQAEKEVQDP-KAHEEKLA----------EQK 289 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCc-hhcccccc----------ccc
Confidence 9999999999999999999999999999999887662 223333332221111100 00001111 111
Q ss_pred cccccccCCCCCCcchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCcchh-HH
Q 006613 313 VIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VR 391 (638)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~sal~~~~~r~k~LKel~~~~~~lks~lkk~~~~~rRqI~~kIGQLSns~~Q-I~ 391 (638)
...|.+...+..|-..--++...++.+.+....-+.++..++++ -..+++|+||+.|||||++..| |.
T Consensus 290 ~~~~~~~~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~-----------~~~~~kr~in~~~~qis~~~~q~L~ 358 (591)
T KOG2412|consen 290 AVIEKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKN-----------YNQSLKRAINPPFSQISKSNGQVLR 358 (591)
T ss_pred cccccccCCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHH-----------HHHHHHhhcCCChhhhhhccHHHHH
Confidence 12222222222222222233466777777777777776555554 4448899999999999999988 99
Q ss_pred HHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceee
Q 006613 392 TKASELVKILNNPL-----CPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYT 463 (638)
Q Consensus 392 ~Is~eL~~lL~~~q-----lP~~i~Ln~lAKkIIsQaEt~---~~~sAfPlA~V~v~L~~~~Pef~DILLArf~kkCP~l 463 (638)
.|++.|.+++++.+ +.|.||+|+|||++|+|+|++ +|.+|||||+|++.||++||+|+|+|||||||+|||+
T Consensus 359 qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~~ 438 (591)
T KOG2412|consen 359 QIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPYV 438 (591)
T ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCcc
Confidence 99999999998743 458899999999999999994 6789999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCcchHHHHHHHH
Q 006613 464 VPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLARF 538 (638)
Q Consensus 464 VP~~~~~~k~~~qTeEey~K~mGYr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~----~~~nP~gi~~~WkWLARI 538 (638)
||||+++ ++|.|.|+|||+. ++|+||..|.|++||+||+||||||++++.| +.-||||+.+||.|||||
T Consensus 439 VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~i 512 (591)
T KOG2412|consen 439 VPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLARI 512 (591)
T ss_pred ccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHHH
Confidence 9999874 3799999999997 7789999999999999999999999999986 345899999999999999
Q ss_pred hCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhcccccCCC
Q 006613 539 LNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE 615 (638)
Q Consensus 539 LN~~P~~~ita~vL~afLevAG~~Ll~~YG~QF~KLL~lI~~d~~p~L~~~~~~~~~~~v~rLe~~Led~~~l~ePE 615 (638)
||+.|.+++||++|.+||++||+.|++.||+||.|||.+|.++|+|++.++++.|..++.+.|+.|| |+.+...|+
T Consensus 513 ln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g~~rl~ill~~~l-~~q~~~~~~ 588 (591)
T KOG2412|consen 513 LNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTGDLRLRILLEAWL-DRQYLKEPE 588 (591)
T ss_pred hCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-Hhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999997777788999999999 888888887
No 2
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=100.00 E-value=8.4e-61 Score=486.24 Aligned_cols=229 Identities=35% Similarity=0.548 Sum_probs=182.2
Q ss_pred HHHHHHHhhh---ccccccccccccccccccccccccCcchhHHHHHHHHHHHhcC--------------CCChHHHHHH
Q 006613 351 LKELDEENQS---LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNN--------------PLCPQSISLA 413 (638)
Q Consensus 351 LKel~~~~~~---lks~lkk~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~--------------~qlP~~i~Ln 413 (638)
++++++.+.. -++.+|+.++++||+||++|||||++.+||++|+++|.++|++ +++++.|+||
T Consensus 5 i~~~k~~~~~~~~~d~~lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (256)
T PF07817_consen 5 IKQIKQALKEPVKSDPSLKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLLN 84 (256)
T ss_dssp HHHHHHHTHHHHHS-HHHHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHHH
Confidence 3444444443 3346889999999999999999999999999999999999653 2235778999
Q ss_pred HHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccC
Q 006613 414 TFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490 (638)
Q Consensus 414 ~lAKkIIsQaEt~---~~~sAfPlA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~ 490 (638)
+|||+||+|||++ ++++|||+|+|++.||+.||+|+|+||||||++|||+||+|+++. .++++|+|+++|||+.+
T Consensus 85 ~lAk~iv~Q~e~ev~~~~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~--~~~~~e~~~k~lGyk~~ 162 (256)
T PF07817_consen 85 FLAKKIVSQAETEVSANPESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFT--CDQSTEEYRKRLGYKRD 162 (256)
T ss_dssp HHHHHHHHHHHHHHHH-GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T-------SSHHHHHHTT--B-
T ss_pred HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCccc--CCCCHHHHHHHcCCccC
Confidence 9999999999995 578999999999999999999999999999999999999998864 35688999999999997
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 006613 491 DGKIESLENYLSRLKSYMRLYAALIQTEIPGV-Q--NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKY 567 (638)
Q Consensus 491 dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~-~--nP~gi~~~WkWLARILN~~P~~~ita~vL~afLevAG~~Ll~~Y 567 (638)
+|+||++++|++||+||++|||||+++++++. . ||||++++|+|||||||++|.+++|++||++||++||++|+++|
T Consensus 163 ~~~~E~~~~y~~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~lN~~p~~~~~~~lL~~~Le~ag~~l~~~Y 242 (256)
T PF07817_consen 163 DGGWESEDQYLKRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARILNLPPAPNITATLLHSFLEVAGFRLLQIY 242 (256)
T ss_dssp TTSB--HHHHHHHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS-CC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999999999999998733 2 79999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 006613 568 KSQFRKILDNIYDN 581 (638)
Q Consensus 568 G~QF~KLL~lI~~d 581 (638)
|+||.|||.+|.++
T Consensus 243 g~Qf~Kll~~i~~~ 256 (256)
T PF07817_consen 243 GRQFVKLLQLISEH 256 (256)
T ss_dssp THHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999864
No 3
>PTZ00121 MAEBL; Provisional
Probab=97.39 E-value=0.0031 Score=77.00 Aligned_cols=20 Identities=30% Similarity=0.337 Sum_probs=8.2
Q ss_pred hHHHhhhhcchHHHHHHHHH
Q 006613 184 MRREMDRKNDTVYQRKIAEA 203 (638)
Q Consensus 184 ~r~e~~r~~~~~~qr~iae~ 203 (638)
+|++.+.+.+..+||.+.||
T Consensus 1114 ~r~~ee~~~r~e~arr~eeA 1133 (2084)
T PTZ00121 1114 ARKAEEAKKKAEDARKAEEA 1133 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443
No 4
>PTZ00121 MAEBL; Provisional
Probab=97.35 E-value=0.017 Score=70.92 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 006613 504 LKSYMRLYAALIQ 516 (638)
Q Consensus 504 MtGI~rLYAAIiq 516 (638)
+...+.-|.||+.
T Consensus 1800 V~dEVdkY~AIIe 1812 (2084)
T PTZ00121 1800 IKDIFDNFANIIE 1812 (2084)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 5
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=97.34 E-value=0.0026 Score=71.63 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 214 DHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAA 288 (638)
Q Consensus 214 ~~e~~~q~~er~ir~~aa~eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~~~e~~ 288 (638)
..+.++++|.+| +.++.+|++|+..-++.++..||+.|++.|+ ++|++|++.++++|++.-.++.|.+
T Consensus 217 ~~~e~kr~Eaer--k~~~~qEe~Rqk~d~~~~~~eqekiR~~eek-----qeee~ke~e~~~~k~~q~~~~~eek 284 (591)
T KOG2412|consen 217 ERSEEKREEAER--KRRAHQEELRQKEDEEAELQEQEKIRAEEEK-----QEEERKEAEEQAEKEVQDPKAHEEK 284 (591)
T ss_pred HHHHhhhhhhHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCchhcccc
Confidence 334445555543 4445577777766777777778888887763 6677788888877777665555444
No 6
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.034 Score=65.06 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHHhHHHhhh
Q 006613 148 GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDR 190 (638)
Q Consensus 148 ~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~~r~e~~r 190 (638)
+=|.|+..++++|| +|-||.++.+++.|++++.|+|-+|
T Consensus 324 kGqaELerRRq~le----eqqqreree~eqkEreE~ekkerer 362 (1118)
T KOG1029|consen 324 KGQAELERRRQALE----EQQQREREEVEQKEREEEEKKERER 362 (1118)
T ss_pred hhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888 7777778889999999998888776
No 7
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.64 E-value=0.053 Score=63.46 Aligned_cols=54 Identities=39% Similarity=0.481 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 006613 228 SDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK-RAALEAEKRAAKE 281 (638)
Q Consensus 228 ~~aa~eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae~~~-k~a~ea~~k~a~e 281 (638)
++.++-|-+|||-..++..+-.|++++++||++++|+||++ |+..|.+.+.+.+
T Consensus 930 qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e 984 (1259)
T KOG0163|consen 930 QELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALE 984 (1259)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35566666677666666666777888888999999988766 4444444444433
No 8
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=96.20 E-value=0.1 Score=49.48 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=114.6
Q ss_pred cccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCc-cHHHHH
Q 006613 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP-QVMDIL 452 (638)
Q Consensus 374 RqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~~~P-ef~DIL 452 (638)
|+|+.-+|+|| ...+..++.+|.++.... ....+..+++.|+..+... |..+-.+|.++..|-..+| +|+..|
T Consensus 2 r~v~~~lnklt--~~n~~~~~~~l~~~~~~~---~~~~~~~i~~~i~~~a~~~-~~~~~~~a~l~~~l~~~~~~~f~~~l 75 (209)
T PF02854_consen 2 RKVRGILNKLT--PSNFESIIDELIKLNWSD---DPETLKEIVKLIFEKAVEE-PNFSPLYARLCAALNSRFPSEFRSLL 75 (209)
T ss_dssp HHHHHHHHHCS--STTHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHCC--HHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHhhhhhcC-chHHHHHHHHHHHHhccchhhHHHHH
Confidence 56777788888 455667777777776542 2345777777777776553 2467888889999999999 999988
Q ss_pred HHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHH
Q 006613 453 LGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGW 532 (638)
Q Consensus 453 LArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~~nP~gi~~~W 532 (638)
+.+++...-...+.. .. + +....+..|+.|++++++-+..... .+....-
T Consensus 76 l~~~~~~f~~~~~~~--------~~-~---------------~~~~~~~~~~~~~~~fl~eL~~~~v------v~~~~i~ 125 (209)
T PF02854_consen 76 LNRCQEEFEERYSNE--------EL-E---------------ENRQSSKQRRRGNIRFLAELFNFGV------VSEKIIF 125 (209)
T ss_dssp HHHHHHHHHHHT-HH--------HH-H---------------HHHHHHHHHHHHHHHHHHHHHHTTS------SCHHHHH
T ss_pred HHHHHHHHHHhhhhh--------hH-H---------------HHHHHHHHHHhhhhhHHHhhHhhcc------ccchhHH
Confidence 888765542211000 00 0 2234667899999999999987542 2222333
Q ss_pred HHHHHHhCCC------CCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 006613 533 AWLARFLNAL------PANIYTAVALNAFLQLAGFALF--KKYKSQFRKILDNIYDNFL 583 (638)
Q Consensus 533 kWLARILN~~------P~~~ita~vL~afLevAG~~Ll--~~YG~QF~KLL~lI~~d~~ 583 (638)
..+..++... |.......++..+|..+|..|. ......+..++..+.....
T Consensus 126 ~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~ 184 (209)
T PF02854_consen 126 DILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYAN 184 (209)
T ss_dssp HHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Confidence 3444444432 2234568888999999999999 6666666666666555444
No 9
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.05 E-value=0.37 Score=56.80 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=8.1
Q ss_pred HHHcCcccCCCcc
Q 006613 482 YKTIGYREEDGKI 494 (638)
Q Consensus 482 ~K~mGYr~~dG~~ 494 (638)
.+.|||--=||+|
T Consensus 1168 k~gmWyaHFdGq~ 1180 (1259)
T KOG0163|consen 1168 KRGMWYAHFDGQW 1180 (1259)
T ss_pred ccceEEEecCcHH
Confidence 3457777666654
No 10
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=96.00 E-value=0.95 Score=48.90 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=5.5
Q ss_pred ccccccccchhhh
Q 006613 126 YLMDEVGLADGAL 138 (638)
Q Consensus 126 ~l~~~~~~~~~~l 138 (638)
-+|+-+=+.+++.
T Consensus 48 ~vi~AVmVDpgav 60 (387)
T COG3064 48 SVIDAVMVDPGAV 60 (387)
T ss_pred ceeeeeEeCcHHH
Confidence 4444444444433
No 11
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=95.93 E-value=3.1 Score=46.23 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.2
Q ss_pred ccccccccchhhh
Q 006613 126 YLMDEVGLADGAL 138 (638)
Q Consensus 126 ~l~~~~~~~~~~l 138 (638)
-.++-+=+.++..
T Consensus 48 ~~i~AVmvD~~~v 60 (387)
T PRK09510 48 SVIDAVMVDPGAV 60 (387)
T ss_pred ccccceecChHHH
Confidence 3444444455444
No 12
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=95.83 E-value=0.53 Score=52.09 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=3.4
Q ss_pred ccccchhhh
Q 006613 130 EVGLADGAL 138 (638)
Q Consensus 130 ~~~~~~~~l 138 (638)
-.|.+--..
T Consensus 56 D~~~v~~q~ 64 (387)
T PRK09510 56 DPGAVVEQY 64 (387)
T ss_pred ChHHHHHHH
Confidence 334443333
No 13
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.80 E-value=0.65 Score=50.08 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=15.3
Q ss_pred hhcceeeccccccccccccccHHHHHHHcCcccCCCc
Q 006613 457 HRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGK 493 (638)
Q Consensus 457 ~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~ 493 (638)
-+.|.+-|-+.++ + | .++|+..+|.
T Consensus 325 gK~C~l~ikL~pd---G---t------l~~~~~~~Gd 349 (387)
T COG3064 325 GKTCRLRIKLAPD---G---T------LLDIKPEGGD 349 (387)
T ss_pred CceeEEEEEEcCC---c---c------eeeccccCCC
Confidence 4678887777643 1 2 4667766654
No 14
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.80 E-value=0.11 Score=63.50 Aligned_cols=10 Identities=30% Similarity=0.973 Sum_probs=6.7
Q ss_pred CCHHHHHHHH
Q 006613 25 WSFDALLSEL 34 (638)
Q Consensus 25 w~~~~~~~e~ 34 (638)
||||-++-||
T Consensus 227 WSLG~ILYEL 236 (1021)
T PTZ00266 227 WALGCIIYEL 236 (1021)
T ss_pred HHHHHHHHHH
Confidence 6777666665
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.26 Score=58.06 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=9.0
Q ss_pred HhhHHHHHhHHHhhh
Q 006613 176 AQVEKDRDMRREMDR 190 (638)
Q Consensus 176 ~~~~k~~~~r~e~~r 190 (638)
.|-+-|..---|+||
T Consensus 317 KrkeNy~kGqaELer 331 (1118)
T KOG1029|consen 317 KRKENYEKGQAELER 331 (1118)
T ss_pred hhHHhHhhhhHHHHH
Confidence 344555556667777
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=94.87 E-value=0.31 Score=59.63 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=5.0
Q ss_pred hHHHHHhHHHhhh
Q 006613 178 VEKDRDMRREMDR 190 (638)
Q Consensus 178 ~~k~~~~r~e~~r 190 (638)
.++++..|+++++
T Consensus 440 ~e~e~~er~~~er 452 (1021)
T PTZ00266 440 IEKENAHRKALEM 452 (1021)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 17
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=94.27 E-value=1.3 Score=42.34 Aligned_cols=168 Identities=19% Similarity=0.215 Sum_probs=106.1
Q ss_pred cccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCccHHHHHH
Q 006613 374 KDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILL 453 (638)
Q Consensus 374 RqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~~~Pef~DILL 453 (638)
++|+.-+|.|| .+.+..++.+|..+..+. + -....+++.|+..+..+ |...-.+|.++..+...+|+|+..|+
T Consensus 2 ~~v~~~lnkLs--~~n~~~~~~~l~~~~~~~--~--~~~~~l~~~i~~~~~~~-~~~~~~ya~L~~~l~~~~~~f~~~ll 74 (200)
T smart00543 2 KKVKGLINKLS--PSNFESIIKELLKLNNSD--K--NLRKYILELIFEKAVEE-PNFIPAYARLCALLNAKNPDFGSLLL 74 (200)
T ss_pred hHHHHHHhhCC--HHHHHHHHHHHHHHHccC--H--HHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788887 467888888888888652 2 24555666666665553 24567788888888888888877776
Q ss_pred HHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchHHH
Q 006613 454 GEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWA 533 (638)
Q Consensus 454 Arf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~~nP~gi~~~Wk 533 (638)
..++..- -... + +......+|..|.+++.+-+..... .+....-.
T Consensus 75 ~~~~~~f--~~~~------------e---------------~~~~~~~~~~~~~i~fl~eL~~~~~------i~~~~i~~ 119 (200)
T smart00543 75 ERLQEEF--EKGL------------E---------------SEEESDKQRRLGLVRFLGELYNFQV------LTSKIILE 119 (200)
T ss_pred HHHHHHH--HHHH------------H---------------HHHHHhhhhHHhHHHHHHHHHHccc------CcHHHHHH
Confidence 6654431 0000 0 0112445788999999998876432 11222334
Q ss_pred HHHHHhCCC--C---CccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 006613 534 WLARFLNAL--P---ANIYTAVALNAFLQLAGFALF-KKYKSQFRKILDNIYDNFL 583 (638)
Q Consensus 534 WLARILN~~--P---~~~ita~vL~afLevAG~~Ll-~~YG~QF~KLL~lI~~d~~ 583 (638)
.+..+++.. | .......++..+|..+|..|. ......+..++..+...+.
T Consensus 120 ~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~ 175 (200)
T smart00543 120 LLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLL 175 (200)
T ss_pred HHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHh
Confidence 444444431 1 124678899999999999999 6666666666666555443
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.25 E-value=4.5 Score=48.09 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=43.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCcchhHHHHHHHHHHHhc
Q 006613 334 VRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILN 402 (638)
Q Consensus 334 ~~~~~sal~~~~~r~k~LKel~~~~~~lks~lkk~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~ 402 (638)
+.++.+|+-..+.++.. -|-..+. +|-.|=.-+|+-||+|...-+||..--.+|...-..|.+++.
T Consensus 592 L~~aL~amqdk~~~LE~--sLsaEtr-iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLEN--SLSAETR-IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHH--hhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555554444431 1111111 455566788999999999999998877888888888888775
No 19
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.69 E-value=0.96 Score=53.74 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHHHhh-CccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCccc-CCCcc---------cchhhHHH
Q 006613 434 CGYVIVLVASQ-VPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKI---------ESLENYLS 502 (638)
Q Consensus 434 lA~V~v~L~~~-~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~-~dG~~---------Ese~~Ylk 502 (638)
||.+++-|+.+ .|.-+.-|-=.=.++|||+|...- --|++||+. .++.+ -....|..
T Consensus 566 ~aIlvvdImhGlepqtiESi~lLR~rktpFivALNK------------iDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~ 633 (1064)
T KOG1144|consen 566 LAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNK------------IDRLYGWKSCPNAPIVEALKKQKKDVQNEFKE 633 (1064)
T ss_pred eEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehh------------hhhhcccccCCCchHHHHHHHhhHHHHHHHHH
Confidence 33344444433 233333333233688999997751 126788886 34322 22567889
Q ss_pred HHHHHHHHHHHHH
Q 006613 503 RLKSYMRLYAALI 515 (638)
Q Consensus 503 RMtGI~rLYAAIi 515 (638)
|+.-|+-=|+-.-
T Consensus 634 R~~~ii~efaEQg 646 (1064)
T KOG1144|consen 634 RLNNIIVEFAEQG 646 (1064)
T ss_pred HHHHHHHHHHHcc
Confidence 9999987776543
No 20
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=91.40 E-value=4.3 Score=46.43 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=31.0
Q ss_pred ccccceEEEeccccccccccccccccccCccccccceecccccccCCCCCccccccCC--ccccccccccchh
Q 006613 66 SNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGG--ESYLMDEVGLADG 136 (638)
Q Consensus 66 ~~~~~fv~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 136 (638)
+.++-||+|+=|... +..|.+|=+.|.+..+-||=.++.- .+|||..-||.+.
T Consensus 47 ~~~~y~ii~~vd~~~------------------~~~~~ADi~~ig~~a~vdhI~nlrrIiagyl~~aygY~~~ 101 (489)
T PF05262_consen 47 SYGRYYIIHAVDPEE------------------KKKLDADIFIIGENARVDHINNLRRIIAGYLEAAYGYSDE 101 (489)
T ss_pred ccCcEEEEEecCccc------------------ccCCCCcEEEEcCCCCccHHHHHHHHHHHHHHHhcCCChh
Confidence 448889999865442 3334555566666666665444432 3366666666543
No 21
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=17 Score=41.46 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=38.0
Q ss_pred hhhHhhhhhcc-ccHHHHHHHHHHHHHHHHhHhhhhHHHHHhhHHHHHhHHHhhhhcchHHHH
Q 006613 137 ALVELTHQHQL-GVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQR 198 (638)
Q Consensus 137 ~l~e~~~~~~~-~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr 198 (638)
+|-|+++-.+- .|-|-+|.+-..+..++..+.+.-.+..+...-++----.-|+|...+.|.
T Consensus 84 Alrein~s~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qa 146 (630)
T KOG0742|consen 84 ALREINHSPYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEET 146 (630)
T ss_pred HHHhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 46677766554 556667776666677777777766666666655554444555555555444
No 22
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=90.31 E-value=0.44 Score=54.44 Aligned_cols=168 Identities=18% Similarity=0.266 Sum_probs=102.4
Q ss_pred HHHHHHHHhhhcccc--ccccccccccccccccccccCcchhHHHHHHHHH--HHhcCCCChHHHHHHHHHHHHHh-hcc
Q 006613 350 KLKELDEENQSLKLS--SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELV--KILNNPLCPQSISLATFSKKVVS-RCE 424 (638)
Q Consensus 350 ~LKel~~~~~~lks~--lkk~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~--~lL~~~qlP~~i~Ln~lAKkIIs-QaE 424 (638)
+|+.+.+++.+..+. ...+|-.+|+.|++.||.++.+ .|..|..+|. ++|.+ -++|++.||. |+-
T Consensus 140 KL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~s--Ni~~ii~eLfqeNiirg--------Rgl~crsv~~aq~a 209 (739)
T KOG2140|consen 140 KLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNAS--NIQEIIRELFQENIIRG--------RGLLCRSVMQAQAA 209 (739)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHH--HHHHHHHHHHHHHHHhc--------cchhHHHHHHHHhc
Confidence 566666677766642 4568899999999999998654 3444443332 22222 4566777765 555
Q ss_pred CCCCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHH
Q 006613 425 TPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRL 504 (638)
Q Consensus 425 t~~~~sAfPlA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~Ese~~YlkRM 504 (638)
+|. ..-.+|.+++.|-+.||++|.+|+-+|..- |. -+|+..| +=|
T Consensus 210 sp~--ft~vyaALvAviNskfP~IgElLlkrLilq------f~-----------------r~f~RnD----------k~~ 254 (739)
T KOG2140|consen 210 SPG--FTPVYAALVAVINSKFPQIGELLLKRLILQ------FK-----------------RSFRRND----------KVS 254 (739)
T ss_pred CCC--CcHHHHHHHHHHccCCchHHHHHHHHHHHH------HH-----------------HHhcccc----------hHH
Confidence 553 556778888999999999999999887422 21 1222222 234
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 006613 505 KSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKS 569 (638)
Q Consensus 505 tGI~rLYAAIiqt~~~~~~nP~gi~~~WkWLARILN~~P~~~ita~vL~afLevAG~~Ll~~YG~ 569 (638)
++-+.=|.|++..- +-.|-+ -+-..|.-+|-. |- +-..-|..+||..||..|..+-.+
T Consensus 255 c~~~~kfiahLinq----~VahEI-v~Leil~lLLe~-PT-ddSvevaI~flkecGakL~~VSpr 312 (739)
T KOG2140|consen 255 CLNASKFIAHLINQ----QVAHEI-VALEILTLLLER-PT-DDSVEVAIAFLKECGAKLAEVSPR 312 (739)
T ss_pred HHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHhcC-CC-CchHHHHHHHHHHHHHHHHHhChH
Confidence 55555555544311 101111 245566666665 43 334566678999999998876443
No 23
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=89.91 E-value=6.4 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=10.7
Q ss_pred cCCCcccccCC---CCCCCcccccc
Q 006613 612 EEPEGRTLQAP---PLSSTLVPEAD 633 (638)
Q Consensus 612 ~ePEGr~m~~~---~~s~~~~~~~~ 633 (638)
+-|.|-.++.| +.|....|...
T Consensus 769 p~~d~~~~p~t~pt~~~p~~lp~s~ 793 (811)
T KOG4364|consen 769 PDKDGKRLPKTIPTFFSPRCLPPST 793 (811)
T ss_pred CCCccccCCCCCCcccCcccCCCcC
Confidence 44466666653 34444444433
No 24
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.57 E-value=3.7 Score=43.23 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006613 264 AEEAKRAALEAEKRAAKE 281 (638)
Q Consensus 264 ae~~~k~a~ea~~k~a~e 281 (638)
.++++|+.-|.+.|+..|
T Consensus 158 ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 158 EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556666666565555
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.40 E-value=42 Score=37.96 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 233 EEAKRKERALQEEKIRQEKVKAEAE 257 (638)
Q Consensus 233 eEA~rke~a~qee~~rq~~ak~eae 257 (638)
++-+-++.+.++..++++-+++|++
T Consensus 222 ~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 222 DQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4444455566677777777777765
No 26
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=86.13 E-value=28 Score=40.01 Aligned_cols=8 Identities=50% Similarity=0.667 Sum_probs=3.6
Q ss_pred ceEEEecc
Q 006613 70 AFVIRVSD 77 (638)
Q Consensus 70 ~fv~r~~~ 77 (638)
--|+=+.+
T Consensus 155 qI~IPL~~ 162 (489)
T PF05262_consen 155 QIVIPLSD 162 (489)
T ss_pred eEEEeccc
Confidence 34554443
No 27
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=85.65 E-value=40 Score=33.85 Aligned_cols=25 Identities=48% Similarity=0.458 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 241 ALQEEKIRQEKVKAEAEMQAKLRAE 265 (638)
Q Consensus 241 a~qee~~rq~~ak~eae~~a~~~ae 265 (638)
..+|+..+..+-|-+|+++|...|+
T Consensus 100 ~e~Ee~e~~~kQkeeae~ka~EeAe 124 (171)
T PF05672_consen 100 KEQEEQERLQKQKEEAEAKAREEAE 124 (171)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3345555555556666655555544
No 28
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=84.28 E-value=4.5 Score=48.43 Aligned_cols=49 Identities=33% Similarity=0.489 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 216 ELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAE 265 (638)
Q Consensus 216 e~~~q~~er~ir~~aa~eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae 265 (638)
|.+..++|+++|.+ ++||++|.|...++|.+|+.+-..|.+..-++++|
T Consensus 231 E~qkreeEE~~r~e-eEEer~~ee~E~~~eEak~kkKekekek~er~Kae 279 (1064)
T KOG1144|consen 231 ERQKREEEERLRRE-EEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAE 279 (1064)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555555544 34556666666666666666644444433444443
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=82.91 E-value=19 Score=44.24 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=5.8
Q ss_pred ccHHHHHHHHHHHH
Q 006613 148 GVKEEIRNLISTLE 161 (638)
Q Consensus 148 ~~~e~~r~~~~~~e 161 (638)
+.-|++...+..||
T Consensus 773 ~t~eev~~a~~~le 786 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELE 786 (1018)
T ss_pred ccHHHHHHHHHHHH
Confidence 33444444444443
No 30
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=80.51 E-value=87 Score=38.36 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=4.3
Q ss_pred cccccccchhh
Q 006613 127 LMDEVGLADGA 137 (638)
Q Consensus 127 l~~~~~~~~~~ 137 (638)
++-|..+-|-|
T Consensus 689 q~KkiDh~ERA 699 (988)
T KOG2072|consen 689 QEKKIDHLERA 699 (988)
T ss_pred HHhhhhHHHHH
Confidence 33344443333
No 31
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.48 E-value=1.2e+02 Score=35.68 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=6.1
Q ss_pred CcccccccccCCC
Q 006613 310 DSSVIAGAQSRGS 322 (638)
Q Consensus 310 ~~~~~~~~~~~~~ 322 (638)
+.+.+.++-++|+
T Consensus 482 ~~kV~~i~~~~~~ 494 (548)
T COG2268 482 SEKVRVIGGANGG 494 (548)
T ss_pred ceeEEecCCcccc
Confidence 3444444444554
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.24 E-value=53 Score=39.41 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHhc
Q 006613 388 DNVRTKASELVKILN 402 (638)
Q Consensus 388 ~QI~~Is~eL~~lL~ 402 (638)
.-++.+...|-+-|.
T Consensus 597 ~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 597 SAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHhhh
Confidence 344444444444443
No 33
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.11 E-value=1.1e+02 Score=34.68 Aligned_cols=6 Identities=33% Similarity=0.650 Sum_probs=3.0
Q ss_pred HHHHHH
Q 006613 509 RLYAAL 514 (638)
Q Consensus 509 rLYAAI 514 (638)
.||+-|
T Consensus 400 ~LYfEi 405 (420)
T COG4942 400 ALYFEI 405 (420)
T ss_pred chhhhh
Confidence 355554
No 34
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=79.93 E-value=29 Score=41.27 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006613 237 RKERALQEEKIRQEKVKAEAE 257 (638)
Q Consensus 237 rke~a~qee~~rq~~ak~eae 257 (638)
++|+..+++|-.||+++...+
T Consensus 311 ekEkeEKrrKdE~Ek~kKqee 331 (811)
T KOG4364|consen 311 EKEKEEKRRKDEQEKLKKQEE 331 (811)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 333333333333444333333
No 35
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=23 Score=38.13 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhcc
Q 006613 412 LATFSKKVVSRCE 424 (638)
Q Consensus 412 Ln~lAKkIIsQaE 424 (638)
+.-+||-+|..+-
T Consensus 357 ~~~~ak~~id~g~ 369 (379)
T COG5269 357 FDEFAKMFIDRGK 369 (379)
T ss_pred HHHHHHHHHhcCC
Confidence 5566777766554
No 36
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=76.77 E-value=1.1e+02 Score=32.85 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=10.5
Q ss_pred ccccccccchh--hhhHhhhhhcc
Q 006613 126 YLMDEVGLADG--ALVELTHQHQL 147 (638)
Q Consensus 126 ~l~~~~~~~~~--~l~e~~~~~~~ 147 (638)
|-||-.+|.-+ +|.||.+-.+-
T Consensus 27 ~~FDP~aLERaAkAlrel~~S~~A 50 (276)
T PF12037_consen 27 SGFDPEALERAAKALRELNSSPHA 50 (276)
T ss_pred CCCCcHHHHHHHHHHHHHhcChhH
Confidence 44555555433 35555554443
No 37
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.67 E-value=25 Score=37.88 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=14.5
Q ss_pred hhhhHHh--hhHHHHHHHHHHHhhhH
Q 006613 206 NHLTAVQ--RDHELKSQIEERKIRSD 229 (638)
Q Consensus 206 ~~~~~~~--r~~e~~~q~~er~ir~~ 229 (638)
+|++.|| +-.|.|.|||-.|+|.+
T Consensus 268 rhlsevqiakraeerrqieterlrqe 293 (445)
T KOG2891|consen 268 RHLSEVQIAKRAEERRQIETERLRQE 293 (445)
T ss_pred hhhhHHHHHHHHHHHhhhhHHHHhhh
Confidence 3555554 33455668877777754
No 38
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=74.58 E-value=60 Score=32.23 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.8
Q ss_pred ccccccccch
Q 006613 126 YLMDEVGLAD 135 (638)
Q Consensus 126 ~l~~~~~~~~ 135 (638)
||-.-..+..
T Consensus 33 ~LR~~tallD 42 (157)
T PF15236_consen 33 FLRGMTALLD 42 (157)
T ss_pred ccccccccCC
Confidence 6654444443
No 39
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=73.86 E-value=38 Score=38.43 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.0
Q ss_pred CCCCccCc
Q 006613 9 RCPQKVDG 16 (638)
Q Consensus 9 ~~~~~~~~ 16 (638)
+++..+.|
T Consensus 125 ~ma~~~~G 132 (429)
T PRK00247 125 RMARPEGG 132 (429)
T ss_pred hccccCCc
Confidence 33333344
No 40
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=73.54 E-value=1.1e+02 Score=31.12 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHHh
Q 006613 192 NDTVYQRKIAEALD 205 (638)
Q Consensus 192 ~~~~~qr~iae~~~ 205 (638)
+-.+|+.+++++..
T Consensus 101 ~l~e~e~~L~~A~~ 114 (205)
T PRK06231 101 LLENAKQRHENALA 114 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666553
No 41
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=73.20 E-value=1.1e+02 Score=38.11 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=19.5
Q ss_pred HhhhhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhH
Q 006613 167 ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTA 210 (638)
Q Consensus 167 e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~iae~~~~~~~~ 210 (638)
..++..+.+.|.++ +=++..+....+.+.|-..=++|+.
T Consensus 759 v~kkla~s~lr~~k-----~t~eev~~a~~~le~a~r~F~~ls~ 797 (1018)
T KOG2002|consen 759 VLKKLAESILRLEK-----RTLEEVLEAVKELEEARRLFTELSK 797 (1018)
T ss_pred HHHHHHHHHHhccc-----ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555544 3344445555555555555455443
No 42
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=72.95 E-value=96 Score=30.21 Aligned_cols=28 Identities=7% Similarity=-0.148 Sum_probs=15.3
Q ss_pred hcchHHHHHHHHHHhhhhhHHhhhHHHH
Q 006613 191 KNDTVYQRKIAEALDNHLTAVQRDHELK 218 (638)
Q Consensus 191 ~~~~~~qr~iae~~~~~~~~~~r~~e~~ 218 (638)
.+..+|+.+++.+..+....+...++..
T Consensus 62 ~~~~~~e~~L~~A~~ea~~Ii~~A~~~a 89 (167)
T PRK14475 62 ALLADVKAEREEAERQAAAMLAAAKADA 89 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777776655544444444433
No 43
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.48 E-value=29 Score=36.78 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhc
Q 006613 412 LATFSKKVVSRC 423 (638)
Q Consensus 412 Ln~lAKkIIsQa 423 (638)
|+.+||-|-.+.
T Consensus 262 l~AVAkfIkqrG 273 (299)
T KOG3054|consen 262 LAAVAKFIKQRG 273 (299)
T ss_pred HHHHHHHHHHcC
Confidence 677777665544
No 44
>PRK11637 AmiB activator; Provisional
Probab=67.74 E-value=2.1e+02 Score=31.94 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=14.0
Q ss_pred HhhhhHHHHHhhHHHH-HhHHHhhhhcchHHH
Q 006613 167 ENEQSNSALAQVEKDR-DMRREMDRKNDTVYQ 197 (638)
Q Consensus 167 e~~~~~~~~~~~~k~~-~~r~e~~r~~~~~~q 197 (638)
++.+....|...++.- ..+..+..++...|+
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444332 344445555555555
No 45
>PLN03086 PRLI-interacting factor K; Provisional
Probab=65.77 E-value=30 Score=40.56 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhcceee
Q 006613 448 VMDILLGEFHRACIYT 463 (638)
Q Consensus 448 f~DILLArf~kkCP~l 463 (638)
...+|--.|..-+-++
T Consensus 202 pKavLE~~Lr~~stLT 217 (567)
T PLN03086 202 HKAVLETALRQHATLS 217 (567)
T ss_pred HHHHHHHHhhcCcccc
Confidence 3444444444333333
No 46
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=62.54 E-value=2e+02 Score=29.85 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=5.2
Q ss_pred hHHHHHHHHH
Q 006613 194 TVYQRKIAEA 203 (638)
Q Consensus 194 ~~~qr~iae~ 203 (638)
.+|+.+++++
T Consensus 60 ~e~e~~l~~a 69 (246)
T TIGR03321 60 REYEEKNEEL 69 (246)
T ss_pred HHHHHHHHHH
Confidence 3555555554
No 47
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=62.32 E-value=1.5e+02 Score=28.53 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHHhhhhhH
Q 006613 192 NDTVYQRKIAEALDNHLTA 210 (638)
Q Consensus 192 ~~~~~qr~iae~~~~~~~~ 210 (638)
+..+|+.+++++..+....
T Consensus 61 ~~~e~e~~l~~A~~ea~~i 79 (164)
T PRK14471 61 LQADNERLLKEARAERDAI 79 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677777765444433
No 48
>PTZ00491 major vault protein; Provisional
Probab=61.65 E-value=3.3e+02 Score=33.73 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006613 216 ELKSQIEERKIRSDAAYEEAKRKERA 241 (638)
Q Consensus 216 e~~~q~~er~ir~~aa~eEA~rke~a 241 (638)
|.++.-+.++|-.+++.+.|+=|-+|
T Consensus 720 ~a~a~aea~~ie~e~~v~~a~lra~a 745 (850)
T PTZ00491 720 EALAEAEARLIEAEAEVEQAELRAKA 745 (850)
T ss_pred HHHHHHHHHhhhhhhHHHHHHhhhHH
Confidence 44455566666666666666555333
No 49
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=61.41 E-value=2.4e+02 Score=30.49 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=16.7
Q ss_pred hhhHhhhhhccccHHHHHHHHHHHH
Q 006613 137 ALVELTHQHQLGVKEEIRNLISTLE 161 (638)
Q Consensus 137 ~l~e~~~~~~~~~~e~~r~~~~~~e 161 (638)
-.+|+++.+-.--|.|.+.++...+
T Consensus 52 ~afel~k~QE~TkQ~E~~ak~~e~e 76 (276)
T PF12037_consen 52 KAFELMKKQEETKQAELQAKIAEYE 76 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777766655777777766655
No 50
>PRK00106 hypothetical protein; Provisional
Probab=61.26 E-value=3.3e+02 Score=32.01 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 006613 596 LVIAEIQY 603 (638)
Q Consensus 596 ~~v~rLe~ 603 (638)
.++.||+.
T Consensus 455 ~~i~rl~~ 462 (535)
T PRK00106 455 NYIKRLRD 462 (535)
T ss_pred HHHHHHHH
Confidence 34444444
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.24 E-value=4.5e+02 Score=33.59 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=16.3
Q ss_pred chhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006613 327 TKKLQSAVRATESALNIEQKRLQKLKELDEENQS 360 (638)
Q Consensus 327 ~~~~~~~~~~~~sal~~~~~r~k~LKel~~~~~~ 360 (638)
|.++...+......+..-..+...+.+++.+++.
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~ 806 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQE 806 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333344444444444444444455555555554
No 52
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=60.75 E-value=73 Score=35.83 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 213 RDHELKSQIEERKIR-SDAAYEEAKRKERALQEEKIRQEKVK 253 (638)
Q Consensus 213 r~~e~~~q~~er~ir-~~aa~eEA~rke~a~qee~~rq~~ak 253 (638)
+|||.-.++-..+-- ++|.+-||--|-+|.|||..++=+|.
T Consensus 84 kd~eae~~~~akk~a~kea~ra~~~akkraa~eee~k~wka~ 125 (510)
T PF04747_consen 84 KDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKKWKAE 125 (510)
T ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 477766555433321 22222333334456777665554433
No 53
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=59.16 E-value=2e+02 Score=28.72 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=10.9
Q ss_pred hhhcchHHHHHHHHHHhhhhh
Q 006613 189 DRKNDTVYQRKIAEALDNHLT 209 (638)
Q Consensus 189 ~r~~~~~~qr~iae~~~~~~~ 209 (638)
-|.....+|+.|....++...
T Consensus 52 rR~kq~E~q~ai~~QieEk~r 72 (157)
T PF15236_consen 52 RRQKQLEHQRAIKQQIEEKRR 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666664443333
No 54
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=58.50 E-value=1.9e+02 Score=28.32 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=5.8
Q ss_pred chHHHHHHHHHH
Q 006613 193 DTVYQRKIAEAL 204 (638)
Q Consensus 193 ~~~~qr~iae~~ 204 (638)
..+|+.+++++.
T Consensus 72 ~~e~e~~L~~a~ 83 (175)
T PRK14472 72 LRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 55
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=57.97 E-value=3.6e+02 Score=31.37 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhHhhhcc-------CCchhHHHHHHHHHHHHhcccccCCCcc
Q 006613 558 LAGFALFKKYKSQFRKILDNIYDN----FLNALKAR-------EDSKLNLVIAEIQYYIEDKKFLEEPEGR 617 (638)
Q Consensus 558 vAG~~Ll~~YG~QF~KLL~lI~~d----~~p~L~~~-------~~~~~~~~v~rLe~~Led~~~l~ePEGr 617 (638)
.+=..|+=.-|.|-.+++-++..+ |-..++++ .-||...-...|..||+....-+-++|-
T Consensus 470 saLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~ 540 (630)
T KOG0742|consen 470 SALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGK 540 (630)
T ss_pred HHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCC
Confidence 333444445566776666544432 22222222 2255666666777777765555555553
No 56
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=56.52 E-value=2.8e+02 Score=31.52 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHhhh
Q 006613 193 DTVYQRKIAEALDNH 207 (638)
Q Consensus 193 ~~~~qr~iae~~~~~ 207 (638)
..+|+.+++++..+.
T Consensus 55 ~~~~e~~L~~Ak~ea 69 (445)
T PRK13428 55 DQAHTKAVEDAKAEA 69 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555544433
No 57
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=56.10 E-value=2.4e+02 Score=28.78 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHhhhHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 197 QRKIAEALDNHLTAVQRDHE-LKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAE 275 (638)
Q Consensus 197 qr~iae~~~~~~~~~~r~~e-~~~q~~er~ir~~aa~eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae~~~k~a~ea~ 275 (638)
...+....+......+++.+ ++...-+.+-+.-....+++++++..++....+++.+.+.+..+++...+..++..+.+
T Consensus 61 ~~~~~~~~ek~k~~~~ke~e~~k~~ek~eke~~k~e~k~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~ 140 (216)
T PF11600_consen 61 KKSLKKQEEKEKKKEEKEKEREKEEEKEEKEREKEEEKEEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKERE 140 (216)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 006613 276 KRAAKEAAEREAA 288 (638)
Q Consensus 276 ~k~a~e~~~~e~~ 288 (638)
+.......+.+..
T Consensus 141 kee~~kek~e~~~ 153 (216)
T PF11600_consen 141 KEEKRKEKEEEKE 153 (216)
T ss_pred HHHHHHHHHHHHH
No 58
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=55.29 E-value=1.1e+02 Score=33.76 Aligned_cols=75 Identities=35% Similarity=0.430 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhhhHHhhhHHHHHHHHHHHhh--hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 197 QRKIAEALDNHLTAVQRDHELKSQIEERKIR--SDAAYEEAKRKER---ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAA 271 (638)
Q Consensus 197 qr~iae~~~~~~~~~~r~~e~~~q~~er~ir--~~aa~eEA~rke~---a~qee~~rq~~ak~eae~~a~~~ae~~~k~a 271 (638)
||+..+ .|+++.+.|+.| -|+|= .|.=.+|-||--. .+-.||.-.+- +++|.+++++-||-+|.|
T Consensus 237 Q~KLEa----EL~q~Ee~hq~k----Krk~~estdsf~~eLKr~c~~kvevd~eK~~~~i--~q~eeq~rkr~eE~~k~a 306 (410)
T KOG4715|consen 237 QRKLEA----ELLQIEERHQEK----KRKFLESTDSFNNELKRLCGLKVEVDMEKMAAEI--AQAEEQARKRQEEREKEA 306 (410)
T ss_pred HHHHHH----HHHHHHHHHHHH----HHHHHhccHHHHHHHHHhcCCcccccHHHHHHHH--HHHHHHHHHhHhHHHhhH
Confidence 555544 444555555544 34442 3555577766311 23344444444 555556777777777777
Q ss_pred HHHHHHHHHH
Q 006613 272 LEAEKRAAKE 281 (638)
Q Consensus 272 ~ea~~k~a~e 281 (638)
.++|.+.+.-
T Consensus 307 ~~~A~~~ass 316 (410)
T KOG4715|consen 307 AEQAEQSASS 316 (410)
T ss_pred hhhhhhhhcc
Confidence 7777666554
No 59
>PTZ00491 major vault protein; Provisional
Probab=54.06 E-value=1.3e+02 Score=36.89 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHH
Q 006613 213 RDHELKSQIEERKIRSDAAYEEAKRK 238 (638)
Q Consensus 213 r~~e~~~q~~er~ir~~aa~eEA~rk 238 (638)
++.|.|-.+|-.||-++++-|++|++
T Consensus 675 ~eQea~g~Lerqk~~d~~~aE~~r~~ 700 (850)
T PTZ00491 675 LEQEARGRLERQKMHDKAKAEEQRTK 700 (850)
T ss_pred HHHHhhchhHHHhhhhHHHHHHHHHH
Confidence 46677778888888777777777665
No 60
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.93 E-value=2.7e+02 Score=28.84 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=23.7
Q ss_pred hhHhhhhhccccHHHHHHHHHHHHHHHHhHhhhhHHHHHhh
Q 006613 138 LVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQV 178 (638)
Q Consensus 138 l~e~~~~~~~~~~e~~r~~~~~~e~~~~~e~~~~~~~~~~~ 178 (638)
.+||.+.|+ .-++.+..|-..+..|+++-.++-+++
T Consensus 61 ~~eLm~r~~-----~Y~~~vrslR~~fr~Ev~r~~e~~~g~ 96 (227)
T KOG4691|consen 61 FFELMERYQ-----HYRQTVRSLRMEFRSEVQRVHEARAGV 96 (227)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 555655554 346667777777778888776666664
No 61
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=53.84 E-value=2.9e+02 Score=29.01 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 006613 194 TVYQRKIAE 202 (638)
Q Consensus 194 ~~~qr~iae 202 (638)
.+|+.++++
T Consensus 60 ~e~e~~l~~ 68 (250)
T PRK14474 60 ERYRQKQQS 68 (250)
T ss_pred HHHHHHHHH
Confidence 344444444
No 62
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=53.54 E-value=3e+02 Score=29.12 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006613 233 EEAKRKERALQEEKIRQEK 251 (638)
Q Consensus 233 eEA~rke~a~qee~~rq~~ 251 (638)
|+|+++-++=...|..+++
T Consensus 180 e~a~~~~q~W~~kK~~e~~ 198 (264)
T PF13904_consen 180 EEAKQRYQEWERKKKEEQQ 198 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555554444444444444
No 63
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=52.62 E-value=2.2e+02 Score=27.39 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=5.1
Q ss_pred hHHHHHHHHHH
Q 006613 194 TVYQRKIAEAL 204 (638)
Q Consensus 194 ~~~qr~iae~~ 204 (638)
.+|+.+++++.
T Consensus 77 ~e~e~~L~~A~ 87 (156)
T CHL00118 77 KQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 64
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=52.50 E-value=1.7e+02 Score=28.74 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=12.8
Q ss_pred cCccc--CCCcccchhhHHHHHHHH
Q 006613 485 IGYRE--EDGKIESLENYLSRLKSY 507 (638)
Q Consensus 485 mGYr~--~dG~~Ese~~YlkRMtGI 507 (638)
+|+.. .+|.++-.-.|..||.-+
T Consensus 149 GGvil~~~~g~I~~dnT~~~rl~~~ 173 (188)
T PRK02292 149 GGVVVESEDGRVRVNNTFDSILEDV 173 (188)
T ss_pred ceEEEEecCCceEEeccHHHHHHHH
Confidence 56664 366665555565555443
No 65
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=51.03 E-value=2.7e+02 Score=31.68 Aligned_cols=19 Identities=0% Similarity=0.043 Sum_probs=11.3
Q ss_pred cchhHHHHHHHHHHHhcCC
Q 006613 386 LKDNVRTKASELVKILNNP 404 (638)
Q Consensus 386 s~~QI~~Is~eL~~lL~~~ 404 (638)
|...+......|..++.++
T Consensus 176 sr~~~~~~~~~~~~~~~~~ 194 (445)
T PRK13428 176 SRRALASLVDRFDSVAADL 194 (445)
T ss_pred hHHHHHHHHHHHHHHhccC
Confidence 3455666666666666543
No 66
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=50.73 E-value=2.6e+02 Score=27.62 Aligned_cols=12 Identities=8% Similarity=-0.022 Sum_probs=5.9
Q ss_pred chHHHHHHHHHH
Q 006613 193 DTVYQRKIAEAL 204 (638)
Q Consensus 193 ~~~~qr~iae~~ 204 (638)
-.+|+.+++++.
T Consensus 78 ~~e~e~~L~~A~ 89 (184)
T CHL00019 78 LEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHH
Confidence 344555555543
No 67
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=49.78 E-value=51 Score=35.60 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=10.4
Q ss_pred ccccceecccccccCCC
Q 006613 97 VAVKRFTCDALYLSESD 113 (638)
Q Consensus 97 ~~~~~f~~~~~~l~~~~ 113 (638)
..|..|.+ |++||-.
T Consensus 187 ~~~~~l~~--i~~TDq~ 201 (321)
T PF07946_consen 187 KAGDYLEY--IHFTDQP 201 (321)
T ss_pred hhhhheeE--EEEECCC
Confidence 35777777 8888653
No 68
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=49.14 E-value=2.7e+02 Score=27.41 Aligned_cols=26 Identities=4% Similarity=-0.103 Sum_probs=13.4
Q ss_pred hHHHhhhhcchHHHHHHHHHHhhhhhH
Q 006613 184 MRREMDRKNDTVYQRKIAEALDNHLTA 210 (638)
Q Consensus 184 ~r~e~~r~~~~~~qr~iae~~~~~~~~ 210 (638)
.|.|++ .+..+|+..+.++..+.-..
T Consensus 50 ~r~eA~-~l~~e~e~~L~~Ar~EA~~I 75 (154)
T PRK06568 50 LKEDAA-LLFEQTNAQIKKLETLRSQM 75 (154)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344443 35556677776655443333
No 69
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=46.71 E-value=1.5e+02 Score=33.25 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=61.8
Q ss_pred CCCCCCCcchHHHHHH-----------------HHhCCCCCcc-chHHHHH----------------HHHHHHHHHHHHH
Q 006613 521 GVQNAHGLKEGWAWLA-----------------RFLNALPANI-YTAVALN----------------AFLQLAGFALFKK 566 (638)
Q Consensus 521 ~~~nP~gi~~~WkWLA-----------------RILN~~P~~~-ita~vL~----------------afLevAG~~Ll~~ 566 (638)
+.-.|...+..|++|| ||.|...-.+ +|..++. +..+..|. ++++
T Consensus 258 gfidpndr~~~wKfLAAEalRG~GaiLl~s~GrRF~nELg~RDyvTgei~kl~~P~ednrallVmnea~~e~~~n-~inF 336 (477)
T KOG2404|consen 258 GFIDPNDRTALWKFLAAEALRGLGAILLNSTGRRFGNELGTRDYVTGEIQKLKCPIEDNRALLVMNEANYEAFGN-NINF 336 (477)
T ss_pred CccCCCCchhHHHHHHHHHhccCceEEEeccchhhhcccccchhhhHhHHhhcCCcccceeEEEecHhHHHHHhh-hhhh
Confidence 4456788889999998 4555432222 2333332 34444555 7778
Q ss_pred HHHHHHHHHHHH-HHHHhHhhhccCCchhHHHHHHHHHHHHh-cccccCCCcccc-cCCCCCCC
Q 006613 567 YKSQFRKILDNI-YDNFLNALKAREDSKLNLVIAEIQYYIED-KKFLEEPEGRTL-QAPPLSST 627 (638)
Q Consensus 567 YG~QF~KLL~lI-~~d~~p~L~~~~~~~~~~~v~rLe~~Led-~~~l~ePEGr~m-~~~~~s~~ 627 (638)
| -|.||+.-+ ..++...++ -....+...|++|-.- .+..+.|=||.+ +.+++|.+
T Consensus 337 Y--~~K~l~kK~~~~el~s~ln----~t~sel~ttl~eY~~~~~g~~~D~fgrk~f~~s~is~t 394 (477)
T KOG2404|consen 337 Y--MFKKLFKKYESAELASALN----ITESELKTTLEEYSKSFTGKSEDPFGRKVFPVSDISPT 394 (477)
T ss_pred H--hHHHHHHHhhHHHHHHHhC----CCHHHHHHHHHHHHHhhcCCCCCcCCCccccCCCCCcc
Confidence 8 777777544 455655555 2334567788888653 477889999875 45777654
No 70
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=46.52 E-value=5.3e+02 Score=30.00 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=5.3
Q ss_pred HHhhCccHHHHH
Q 006613 441 VASQVPQVMDIL 452 (638)
Q Consensus 441 L~~~~Pef~DIL 452 (638)
|...||++..+|
T Consensus 306 ~~~~~~~~~~~l 317 (514)
T TIGR03319 306 VHGLHPELIKLL 317 (514)
T ss_pred CCcCCHHHHHHH
Confidence 333455544443
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=46.13 E-value=2.3e+02 Score=33.62 Aligned_cols=15 Identities=33% Similarity=0.198 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 006613 340 ALNIEQKRLQKLKEL 354 (638)
Q Consensus 340 al~~~~~r~k~LKel 354 (638)
||+-+..|...|..+
T Consensus 729 aYwpe~kr~a~~drY 743 (940)
T KOG4661|consen 729 AYWPESKRKAVLDRY 743 (940)
T ss_pred ccCchhhhhhHhhhh
Confidence 555555565555443
No 72
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.78 E-value=6.4e+02 Score=30.70 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=26.8
Q ss_pred HHHhHhhhhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 006613 163 QLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQI 221 (638)
Q Consensus 163 ~~~~e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~iae~~~~~~~~~~r~~e~~~q~ 221 (638)
.+..+.++-...+..++.+++.=++...++. .++.++.|+|-.=++|-..+....
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555444455555544333333322222 246666666666666666655433
No 73
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=45.17 E-value=3.1e+02 Score=26.99 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 006613 194 TVYQRKIAEA 203 (638)
Q Consensus 194 ~~~qr~iae~ 203 (638)
.+|+.+++++
T Consensus 82 ~e~e~~L~~A 91 (184)
T PRK13455 82 ASYERKQREV 91 (184)
T ss_pred HHHHHHHHHH
Confidence 3444455543
No 74
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.16 E-value=3.4e+02 Score=33.16 Aligned_cols=6 Identities=0% Similarity=-0.512 Sum_probs=2.1
Q ss_pred eeeccc
Q 006613 461 IYTVPK 466 (638)
Q Consensus 461 P~lVP~ 466 (638)
|++..|
T Consensus 748 ~~V~~f 753 (771)
T TIGR01069 748 PKVKSF 753 (771)
T ss_pred cceeee
Confidence 333333
No 75
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=43.96 E-value=99 Score=36.00 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=15.4
Q ss_pred HHHHHhhhc-ceeeccccccccccccccHHHHHHHcCcc
Q 006613 451 ILLGEFHRA-CIYTVPKHIVFSEAAFESEEAYYKTIGYR 488 (638)
Q Consensus 451 ILLArf~kk-CP~lVP~~~~~~k~~~qTeEey~K~mGYr 488 (638)
.|++.|... |-|---|++. .+ +++.++..||-
T Consensus 616 ~FliLfrds~cqfralyT~~-----~E-Teei~kl~gmg 648 (708)
T KOG3654|consen 616 HFLILFRDSGCQFRALYTYM-----PE-TEEIRKLTGMG 648 (708)
T ss_pred hhhhhhhhccceeecccccC-----cc-HHHHhhhhccC
Confidence 445555443 4444444332 12 35666666654
No 76
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=43.60 E-value=2.1e+02 Score=34.00 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHh
Q 006613 215 HELKSQIEERKI 226 (638)
Q Consensus 215 ~e~~~q~~er~i 226 (638)
.|.+..|+|++.
T Consensus 623 ~eer~RirE~re 634 (940)
T KOG4661|consen 623 AEERQRIREERE 634 (940)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 77
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=41.77 E-value=3.6e+02 Score=26.70 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=8.2
Q ss_pred hccccHHHHHHHHHH
Q 006613 145 HQLGVKEEIRNLIST 159 (638)
Q Consensus 145 ~~~~~~e~~r~~~~~ 159 (638)
-.-+|-+.|+.++-.
T Consensus 12 ~akRvEe~V~krVee 26 (149)
T PF15346_consen 12 TAKRVEEAVRKRVEE 26 (149)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666665543
No 78
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.34 E-value=3.6e+02 Score=26.31 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=7.7
Q ss_pred cchHHHHHHHHHHhh
Q 006613 192 NDTVYQRKIAEALDN 206 (638)
Q Consensus 192 ~~~~~qr~iae~~~~ 206 (638)
+..+|+.+++++..+
T Consensus 72 ~~~~~~~~L~~a~~e 86 (174)
T PRK07352 72 ALAEAQQKLAQAQQE 86 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556666665433
No 79
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=40.02 E-value=3.7e+02 Score=26.35 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 006613 195 VYQRKIAEAL 204 (638)
Q Consensus 195 ~~qr~iae~~ 204 (638)
+|+.+++++.
T Consensus 74 e~e~~l~~a~ 83 (173)
T PRK13453 74 ENKQKLKETQ 83 (173)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 80
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=39.74 E-value=8.5e+02 Score=30.45 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=14.2
Q ss_pred HHHHHhhHHHHHhHHHhhhhcc
Q 006613 172 NSALAQVEKDRDMRREMDRKND 193 (638)
Q Consensus 172 ~~~~~~~~k~~~~r~e~~r~~~ 193 (638)
.++|--.+++-..|.+-|+.+=
T Consensus 702 ~EeiPL~e~~~~~~~~~d~e~~ 723 (988)
T KOG2072|consen 702 LEEIPLIEKAYDERQEEDRELY 723 (988)
T ss_pred HHhhhhHHHHHHHHHhhhHHHH
Confidence 5556666666667777776653
No 81
>PF07349 DUF1478: Protein of unknown function (DUF1478); InterPro: IPR009949 This family consists of several hypothetical Sapovirus VP3 proteins of around 165 residues in length. The function of this family is unknown.
Probab=38.85 E-value=28 Score=34.27 Aligned_cols=39 Identities=28% Similarity=0.583 Sum_probs=27.6
Q ss_pred CCCCCCcchHHHHHHHHhCCCCCcc-chHHHHHHHHHHHH
Q 006613 522 VQNAHGLKEGWAWLARFLNALPANI-YTAVALNAFLQLAG 560 (638)
Q Consensus 522 ~~nP~gi~~~WkWLARILN~~P~~~-ita~vL~afLevAG 560 (638)
..||.|+.++|+||--.+-.+|-.. -.+++|.+|.-..|
T Consensus 35 ~nNpmgp~nAW~WLL~lvqsn~MSl~qy~taL~S~~llLG 74 (162)
T PF07349_consen 35 RNNPMGPHNAWSWLLPLVQSNQMSLMQYATALQSFVLLLG 74 (162)
T ss_pred hcCCCCCchHHHHhcccCCCCcccHHHHHHHHHHHHHHHc
Confidence 4689999999999987777655432 35677777655444
No 82
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=37.46 E-value=3.9e+02 Score=30.38 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHH
Q 006613 337 TESALNIEQKRLQ 349 (638)
Q Consensus 337 ~~sal~~~~~r~k 349 (638)
+.-+|++.++|+-
T Consensus 414 dp~~leefkrril 426 (442)
T PF06637_consen 414 DPASLEEFKRRIL 426 (442)
T ss_pred ChHHHHHHHHHHH
Confidence 3446666666653
No 83
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.05 E-value=1.4e+02 Score=28.73 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=5.8
Q ss_pred hHHhhhHHHHH
Q 006613 209 TAVQRDHELKS 219 (638)
Q Consensus 209 ~~~~r~~e~~~ 219 (638)
.+++.++|++.
T Consensus 89 ~ALk~q~E~~K 99 (132)
T PF11208_consen 89 QALKLQREQRK 99 (132)
T ss_pred HHHHHHHHHHH
Confidence 34445666653
No 84
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.99 E-value=4.3e+02 Score=25.90 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 006613 195 VYQRKIAE 202 (638)
Q Consensus 195 ~~qr~iae 202 (638)
+|+..+.+
T Consensus 78 e~e~~L~~ 85 (167)
T PRK08475 78 DALKKLEE 85 (167)
T ss_pred HHHHHHHH
Confidence 33444443
No 85
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=35.56 E-value=2.7e+02 Score=28.59 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.6
Q ss_pred CHHHHH
Q 006613 26 SFDALL 31 (638)
Q Consensus 26 ~~~~~~ 31 (638)
.||.+.
T Consensus 28 ~fGk~~ 33 (266)
T cd03404 28 RFGKYS 33 (266)
T ss_pred EcCccc
Confidence 344443
No 86
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=35.22 E-value=4.5e+02 Score=25.91 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006613 224 RKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293 (638)
Q Consensus 224 r~ir~~aa~eEA~rke~a~qee~~rq~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~~~e~~~~~~~ 293 (638)
.+|.++|..|-.+--+.|.++...-.+.++.+|+..+..-.+.+++.+.....++...+...-+.+....
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~a 78 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAV 78 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 87
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=34.90 E-value=1.5e+02 Score=23.40 Aligned_cols=22 Identities=45% Similarity=0.362 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006613 260 AKLRAEEAKRAALEAEKRAAKE 281 (638)
Q Consensus 260 a~~~ae~~~k~a~ea~~k~a~e 281 (638)
|.+-+|.+++.++||.+.+.+|
T Consensus 10 a~k~aEaeKqraAEA~k~aEae 31 (42)
T PF07046_consen 10 ATKVAEAEKQRAAEATKAAEAE 31 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455554443333
No 88
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.85 E-value=36 Score=38.78 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHHHHH--HhccCCCCcccccc
Q 006613 21 PEPDWSFDALLSELNSLET--RLNASSKPVPFTKT 53 (638)
Q Consensus 21 p~p~w~~~~~~~e~~~~~~--~~~~~~~~~p~~~~ 53 (638)
|.|.|||++-...--++-. +-+++++|+|++-+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQ 249 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQ 249 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhc
Confidence 9999999998877666533 56788899999655
No 89
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=34.47 E-value=5.5e+02 Score=29.00 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=13.3
Q ss_pred hHHHhhhhcchHHHHHHHHHH
Q 006613 184 MRREMDRKNDTVYQRKIAEAL 204 (638)
Q Consensus 184 ~r~e~~r~~~~~~qr~iae~~ 204 (638)
+..++-..+|..-+.+-||++
T Consensus 215 ~~el~Ka~~dveV~~~~aEA~ 235 (428)
T KOG2668|consen 215 TKELIKAATDVEVNTNKAEAD 235 (428)
T ss_pred hHHHHHhhhhhHhhhhHHHHH
Confidence 555666666666666666654
No 90
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=33.68 E-value=3.8e+02 Score=31.38 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=42.4
Q ss_pred hhhHHhhHHHHHHH-HHHHHHHHHHHHHhhh--ccc-cccccccccccccccccccccCcchh----HHHHHHHHHHHhc
Q 006613 331 QSAVRATESALNIE-QKRLQKLKELDEENQS--LKL-SSNEDFSGYEKDISRLIRQIRGLKDN----VRTKASELVKILN 402 (638)
Q Consensus 331 ~~~~~~~~sal~~~-~~r~k~LKel~~~~~~--lks-~lkk~~~~~rRqI~~kIGQLSns~~Q----I~~Is~eL~~lL~ 402 (638)
|.++.+-+.++..+ +.|.-.|+.++--... -|. ..+-++-.+=|-|--.|||--+-.-+ ...|..++..+|+
T Consensus 347 ~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkAaqmk~qV~thLrvIeeR~NqsLslL~~~P~vaqeirdev~ell~ 426 (615)
T KOG3540|consen 347 HRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKAAQMKSQVMTHLRVIEERINQSLSLLYDVPAVAQEIRDEVDELLQ 426 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcchhHHHhcChHHHHHHHHHHHHHHh
Confidence 45566666565544 5566677776654443 111 23334444555555555553322211 2345555556665
Q ss_pred CCC-ChHHHHHHHHHHH
Q 006613 403 NPL-CPQSISLATFSKK 418 (638)
Q Consensus 403 ~~q-lP~~i~Ln~lAKk 418 (638)
..+ .+--|.-|+.++-
T Consensus 427 ~e~~~~de~~an~~~~P 443 (615)
T KOG3540|consen 427 VEDSHDDEFSANTTAKP 443 (615)
T ss_pred hhhcChhhhccccccCC
Confidence 322 2333445544444
No 91
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=33.39 E-value=3.1e+02 Score=28.02 Aligned_cols=6 Identities=50% Similarity=0.894 Sum_probs=2.6
Q ss_pred HHHHHH
Q 006613 233 EEAKRK 238 (638)
Q Consensus 233 eEA~rk 238 (638)
+.|++|
T Consensus 86 eaAR~R 91 (190)
T PF06936_consen 86 EAARRR 91 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 92
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=33.10 E-value=2.5e+02 Score=34.17 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=87.8
Q ss_pred ccccccccccccccccccccCcchhHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHh
Q 006613 365 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLC-PQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS 443 (638)
Q Consensus 365 lkk~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~ql-P~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~ 443 (638)
-..++..++|+|+-.+|.||.+ .|..|+..|..+-.+..- .-.-+|..+-..++.+-..-.-..+.-+|.+++.|.
T Consensus 312 ~sE~l~rl~rkv~g~LNKLSda--Ni~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~- 388 (822)
T KOG2141|consen 312 ESEQLQRLRRKVNGSLNKLSDA--NIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLH- 388 (822)
T ss_pred chHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-
Confidence 4456778999999999999764 577788888777754211 011123333333444333311124455555555543
Q ss_pred hCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhcCCCCCC
Q 006613 444 QVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ 523 (638)
Q Consensus 444 ~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~~~~ 523 (638)
...+.-+=|||+.+..-.+-.++- .++. .+.-.+-|.+|+.+.+-+....+
T Consensus 389 --~~vg~eigahf~q~~ve~f~~~~~-------~~~~----------------~~~~~K~~~Nl~~~l~ylynF~i---- 439 (822)
T KOG2141|consen 389 --TMVGNEIGAHFLQTFVEDFLKSYK-------EEEE----------------MDLKDKSLNNIVLFLSYLYNFGI---- 439 (822)
T ss_pred --HHHhhHHHHHHHHHHHHHHHHHHH-------HHHh----------------cccccchhhhHHHHHHHHHHhhc----
Confidence 334555566664433222222221 1110 00114567788877766654221
Q ss_pred CCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 524 NAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQF 571 (638)
Q Consensus 524 nP~gi~~~WkWLARILN~~P~~~ita~vL~afLevAG~~Ll~~YG~QF 571 (638)
+...-..-.|-.++-. ++.+...+|-.++..||+.+-.-=...+
T Consensus 440 --vs~~LiydiI~kl~~~--l~e~~ve~ll~ii~~~G~~LRkDDp~al 483 (822)
T KOG2141|consen 440 --VSCSLIYDIIRKLAEN--LNETNVEALLTIIANCGFSLRKDDPLAL 483 (822)
T ss_pred --ccHHHHHHHHHHHHhc--hhhhhHHHHHHHHHHccchhcCCChHHH
Confidence 1122233333333332 3446667777889999988765444333
No 93
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.65 E-value=1.2e+03 Score=29.76 Aligned_cols=8 Identities=38% Similarity=0.393 Sum_probs=5.2
Q ss_pred HHHhccCC
Q 006613 38 ETRLNASS 45 (638)
Q Consensus 38 ~~~~~~~~ 45 (638)
.+.|++++
T Consensus 53 ~k~lRa~~ 60 (1163)
T COG1196 53 AKNLRASK 60 (1163)
T ss_pred hhhhhccC
Confidence 56666666
No 94
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=31.12 E-value=3.2e+02 Score=31.17 Aligned_cols=45 Identities=27% Similarity=0.176 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhcccccCCCCCCCCCCcccccccccCCCCCCcch
Q 006613 284 EREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTK 328 (638)
Q Consensus 284 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (638)
++++.-|+++++..-..+=..++-+|-|-.|+=.-.++|.+..+-
T Consensus 359 e~~~~~nlsra~~dKrsKl~r~r~RDiSEkIaLG~~~~~~~~e~q 403 (506)
T KOG2441|consen 359 EREKDRNLSRAAPDKRSKLQRDRGRDISEKIALGLAKPSESGEVQ 403 (506)
T ss_pred HHHHhhhhhhhccchhhhhhhccCcchHhhhhhccCCCCCCCcch
Confidence 444444555444333333334445555554442223555555443
No 95
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.02 E-value=7.5e+02 Score=27.18 Aligned_cols=16 Identities=44% Similarity=0.540 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhHHH
Q 006613 216 ELKSQIEERKIRSDAA 231 (638)
Q Consensus 216 e~~~q~~er~ir~~aa 231 (638)
|+-.+-||.+-|.+.|
T Consensus 335 eleqmaeeekkr~eea 350 (445)
T KOG2891|consen 335 ELEQMAEEEKKREEEA 350 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 96
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=30.07 E-value=33 Score=29.54 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=14.5
Q ss_pred Ccc-ccCCCCCCCHHHHHHH
Q 006613 15 DGI-AIDPEPDWSFDALLSE 33 (638)
Q Consensus 15 ~~~-~~dp~p~w~~~~~~~e 33 (638)
+|| --||+|.||.+++++=
T Consensus 12 ~gi~L~DP~p~~spe~V~df 31 (66)
T TIGR03738 12 NGVRLADPSPAMSPEQVRDF 31 (66)
T ss_pred CCeEcCCCCCCCCHHHHHHH
Confidence 453 3599999999998763
No 97
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=30.00 E-value=5.2e+02 Score=28.33 Aligned_cols=6 Identities=50% Similarity=0.817 Sum_probs=2.6
Q ss_pred hhHHHH
Q 006613 213 RDHELK 218 (638)
Q Consensus 213 r~~e~~ 218 (638)
||--+|
T Consensus 228 ~DPRIK 233 (379)
T COG5269 228 RDPRIK 233 (379)
T ss_pred cCcchh
Confidence 344443
No 98
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=29.87 E-value=5e+02 Score=24.84 Aligned_cols=14 Identities=43% Similarity=0.264 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHh
Q 006613 192 NDTVYQRKIAEALD 205 (638)
Q Consensus 192 ~~~~~qr~iae~~~ 205 (638)
+..+|+.+++.+..
T Consensus 55 ~~~~~e~~L~~A~~ 68 (159)
T PRK09173 55 LLAEYQRKRKEAEK 68 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 99
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=29.68 E-value=5.4e+02 Score=25.13 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 006613 194 TVYQRKIAEAL 204 (638)
Q Consensus 194 ~~~qr~iae~~ 204 (638)
.+|+.+++++.
T Consensus 71 ~e~e~~l~~a~ 81 (173)
T PRK13460 71 KDYEARLNSAK 81 (173)
T ss_pred HHHHHHHHHHH
Confidence 34444454443
No 100
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=29.65 E-value=6.8e+02 Score=26.26 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.6
Q ss_pred hhHHHH
Q 006613 498 ENYLSR 503 (638)
Q Consensus 498 ~~YlkR 503 (638)
+.|++=
T Consensus 235 ~~yl~~ 240 (250)
T PRK14474 235 AEYLDA 240 (250)
T ss_pred HHHHHH
Confidence 345433
No 101
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=29.29 E-value=1.4e+03 Score=29.84 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=12.2
Q ss_pred ccceEEEeccccccc
Q 006613 68 ARAFVIRVSDDELEN 82 (638)
Q Consensus 68 ~~~fv~r~~~~~~~~ 82 (638)
.-|||=-|+-|+|++
T Consensus 353 ~pP~vPevssd~DTs 367 (1317)
T KOG0612|consen 353 VPPVVPEVSSDDDTS 367 (1317)
T ss_pred CCCCCCcCCCCCccc
Confidence 567888898888876
No 102
>PF07046 CRA_rpt: Cytoplasmic repetitive antigen (CRA) like repeat; InterPro: IPR009761 This family consists of several repeats of around 42 residues in length. These repeated sequences are found in multiple copies in Trypanosoma cruzi antigens, Q26907 from SWISSPROT contains 23 copies of this repeat [].
Probab=28.75 E-value=1.6e+02 Score=23.22 Aligned_cols=11 Identities=64% Similarity=0.622 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 006613 271 ALEAEKRAAKE 281 (638)
Q Consensus 271 a~ea~~k~a~e 281 (638)
++|++++.++|
T Consensus 27 ~aEaeKqraaE 37 (42)
T PF07046_consen 27 AAEAEKQRAAE 37 (42)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 103
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.37 E-value=1.4e+03 Score=29.42 Aligned_cols=25 Identities=4% Similarity=0.089 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhh
Q 006613 335 RATESALNIEQKRLQKLKELDEENQ 359 (638)
Q Consensus 335 ~~~~sal~~~~~r~k~LKel~~~~~ 359 (638)
+++...+...+.+++.|++..+++.
T Consensus 767 GvD~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 767 GVDPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666655555554444333
No 104
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=27.94 E-value=1.3e+02 Score=29.17 Aligned_cols=6 Identities=0% Similarity=0.456 Sum_probs=2.3
Q ss_pred HHHHHH
Q 006613 152 EIRNLI 157 (638)
Q Consensus 152 ~~r~~~ 157 (638)
-+|+-+
T Consensus 101 ~lR~vi 106 (196)
T cd03401 101 VLKAVV 106 (196)
T ss_pred HHHHHH
Confidence 334333
No 105
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=27.93 E-value=5.1e+02 Score=27.93 Aligned_cols=14 Identities=29% Similarity=0.200 Sum_probs=6.7
Q ss_pred CCCCccccccCCcc
Q 006613 112 SDDSDDDVALGGES 125 (638)
Q Consensus 112 ~~~~~~~~~~~~~~ 125 (638)
+|||+++...-.-|
T Consensus 26 ~SdSEde~~~~lKP 39 (276)
T PF06991_consen 26 SSDSEDEEEPLLKP 39 (276)
T ss_pred cccccccccccccc
Confidence 34454444444455
No 106
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=27.79 E-value=6.7e+02 Score=25.60 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=8.3
Q ss_pred cchHHHHHHHHHHhh
Q 006613 192 NDTVYQRKIAEALDN 206 (638)
Q Consensus 192 ~~~~~qr~iae~~~~ 206 (638)
+..+|+.+++++..+
T Consensus 106 ~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 106 AVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566666665533
No 107
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=27.72 E-value=4.8e+02 Score=23.87 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006613 260 AKLRAEEAKRAALEAEKRAAKE 281 (638)
Q Consensus 260 a~~~ae~~~k~a~ea~~k~a~e 281 (638)
|+...+.++..+....+...+.
T Consensus 59 Ak~eie~Ek~~a~~elk~eia~ 80 (103)
T PRK08404 59 KKKEGEEEAKKILEEGEKEIEE 80 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555544444444
No 108
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.50 E-value=5e+02 Score=24.08 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 006613 195 VYQRKIAE 202 (638)
Q Consensus 195 ~~qr~iae 202 (638)
+|+.++++
T Consensus 61 ~~e~~L~~ 68 (140)
T PRK07353 61 QYEQQLAS 68 (140)
T ss_pred HHHHHHHH
Confidence 33444443
No 109
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=27.03 E-value=1e+03 Score=27.56 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=8.0
Q ss_pred hhhhhHHhhhHHHHHH
Q 006613 205 DNHLTAVQRDHELKSQ 220 (638)
Q Consensus 205 ~~~~~~~~r~~e~~~q 220 (638)
|....-.-|+++.+.|
T Consensus 372 dea~~e~~~a~eAekq 387 (672)
T KOG4722|consen 372 DEAFFEIFEAFEAEKQ 387 (672)
T ss_pred hHHHHHHHHHHhHHHH
Confidence 3444445556665543
No 110
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=26.07 E-value=43 Score=28.66 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.3
Q ss_pred Cccc-cCCCCCCCHHHHHHHH
Q 006613 15 DGIA-IDPEPDWSFDALLSEL 34 (638)
Q Consensus 15 ~~~~-~dp~p~w~~~~~~~e~ 34 (638)
+|+- -||.|.||.+++++=.
T Consensus 13 ~g~~L~DP~p~~spe~V~~~y 33 (65)
T PF14454_consen 13 NGITLPDPNPSLSPEEVRDFY 33 (65)
T ss_pred CCEECCCCCCCCCHHHHHHHH
Confidence 5643 4899999999997643
No 111
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=25.58 E-value=3.3e+02 Score=31.44 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=5.6
Q ss_pred HHhhHHHHHhHHHhh
Q 006613 175 LAQVEKDRDMRREMD 189 (638)
Q Consensus 175 ~~~~~k~~~~r~e~~ 189 (638)
+..|.+.+ .-.|+=
T Consensus 261 ~~iv~~~~-~~~Ell 274 (460)
T KOG1363|consen 261 VRIVIGSR-SPEELL 274 (460)
T ss_pred hhhhhcCC-CHHHHH
Confidence 33444443 333433
No 112
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.32 E-value=6.2e+02 Score=24.36 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=5.1
Q ss_pred hHHHHHHHHHH
Q 006613 194 TVYQRKIAEAL 204 (638)
Q Consensus 194 ~~~qr~iae~~ 204 (638)
.+|+.+++++.
T Consensus 63 ~e~e~~l~~A~ 73 (164)
T PRK14473 63 RDYEAELAKAR 73 (164)
T ss_pred HHHHHHHHHHH
Confidence 34455555433
No 113
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=25.30 E-value=1e+02 Score=33.23 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006613 235 AKRKERALQEEKIRQEK 251 (638)
Q Consensus 235 A~rke~a~qee~~rq~~ 251 (638)
+||||+.+=||++++++
T Consensus 95 ~krkek~~iee~e~~~q 111 (279)
T PF07271_consen 95 YKRKEKRMIEEKEEHEQ 111 (279)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 45777777777776655
No 114
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=25.22 E-value=7.6e+02 Score=25.39 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 006613 251 KVKAEAEMQAKLR 263 (638)
Q Consensus 251 ~ak~eae~~a~~~ 263 (638)
++...+++.+++.
T Consensus 68 r~~s~a~l~~R~~ 80 (207)
T PRK01005 68 QGESALVQAGKRS 80 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444433
No 115
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.66 E-value=8.3e+02 Score=25.60 Aligned_cols=113 Identities=27% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHhHHHhhhhcch--HHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006613 179 EKDRDMRREMDRKNDT--VYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEA 256 (638)
Q Consensus 179 ~k~~~~r~e~~r~~~~--~~qr~iae~~~~~~~~~~r~~e~~~q~~er~ir~~aa~eEA~rke~a~qee~~rq~~ak~ea 256 (638)
|+....+.|++.+|.. ..-++.-+++......+..-.+...+.++.+-+=+...-+|..--+.++.+++.+++.|...
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006613 257 EMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293 (638)
Q Consensus 257 e~~a~~~ae~~~k~a~ea~~k~a~e~~~~e~~~~~~~ 293 (638)
+ ++..+.+...+..+.+..........=+.+...+
T Consensus 81 e--~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 81 E--QELREAEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=24.29 E-value=3.9e+02 Score=23.99 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHhCCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006613 534 WLARFLNALPANIY-TAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFL 583 (638)
Q Consensus 534 WLARILN~~P~~~i-ta~vL~afLevAG~~Ll~~YG~QF~KLL~lI~~d~~ 583 (638)
|+-.+.+.+|...+ ..+|+.+.+..++......|...|.+++.-+..+..
T Consensus 37 i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~ 87 (121)
T smart00582 37 WEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVL 87 (121)
T ss_pred HHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 45556665444444 578899999988765444444455444444444333
No 117
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.92 E-value=1.8e+03 Score=29.17 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHhHhhhhHHHHHhhHHHH-HhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006613 162 TQLISENEQSNSALAQVEKDR-DMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKER 240 (638)
Q Consensus 162 ~~~~~e~~~~~~~~~~~~k~~-~~r~e~~r~~~~~~qr~iae~~~~~~~~~~r~~e~~~q~~er~ir~~aa~eEA~rke~ 240 (638)
..|..+|+.+.+.|..|+.-- +++-.++| .+-.+.....+-.+++.++.+.+.=+--=++|.+---.-+.
T Consensus 1514 ~~L~~~I~e~v~sL~nVd~IL~~T~~di~r---------a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ 1584 (1758)
T KOG0994|consen 1514 QQLTGEIQERVASLPNVDAILSRTKGDIAR---------AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQD 1584 (1758)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhhhhhHHH---------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh-hhhcccccCCCCCCCCCCcccccccc
Q 006613 241 ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEA-AEREAAENSK-RITAGVSQDGACGRQPDDSSVIAGAQ 318 (638)
Q Consensus 241 a~qee~~rq~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~-~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (638)
+.|+.-.-+.-+..-.++....-+..++++-.-..+-+..+. ++.=+-+..+ +..++.+
T Consensus 1585 ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a------------------- 1645 (1758)
T KOG0994|consen 1585 AIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQA------------------- 1645 (1758)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH-------------------
Q ss_pred cCCCCCCcchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhhcccccccccc---ccccccccccccccCcchhHHHHHH
Q 006613 319 SRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFS---GYEKDISRLIRQIRGLKDNVRTKAS 395 (638)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~sal~~~~~r~k~LKel~~~~~~lks~lkk~~~---~~rRqI~~kIGQLSns~~QI~~Is~ 395 (638)
..-+-+|....+.-.+.|+.|.++.+-++.-+.+.+. +-++.+...-.--..-..|.+.+-+
T Consensus 1646 ---------------~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~ 1710 (1758)
T KOG0994|consen 1646 ---------------EKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLD 1710 (1758)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 006613 396 ELVKI 400 (638)
Q Consensus 396 eL~~l 400 (638)
.|.+|
T Consensus 1711 ~l~dL 1715 (1758)
T KOG0994|consen 1711 RLKDL 1715 (1758)
T ss_pred HHHHH
No 118
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.74 E-value=8.5e+02 Score=25.42 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=4.4
Q ss_pred ccchhhhh
Q 006613 132 GLADGALV 139 (638)
Q Consensus 132 ~~~~~~l~ 139 (638)
++++|-++
T Consensus 41 P~aKsk~~ 48 (227)
T KOG4691|consen 41 PLAKSKIE 48 (227)
T ss_pred Chhhhhhh
Confidence 45555555
No 119
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=23.61 E-value=5.1e+02 Score=30.53 Aligned_cols=12 Identities=25% Similarity=0.210 Sum_probs=6.9
Q ss_pred cceecccccccC
Q 006613 100 KRFTCDALYLSE 111 (638)
Q Consensus 100 ~~f~~~~~~l~~ 111 (638)
---.-|++-|||
T Consensus 343 ~p~a~~evdlsd 354 (708)
T KOG3654|consen 343 DPAAEDEVDLSD 354 (708)
T ss_pred CCccccccCccc
Confidence 334456777774
No 120
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.37 E-value=3.4e+02 Score=31.09 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=6.6
Q ss_pred cCCccccccccccc
Q 006613 121 LGGESYLMDEVGLA 134 (638)
Q Consensus 121 ~~~~~~l~~~~~~~ 134 (638)
..+-| ++++.|.-
T Consensus 304 Q~sgP-~~~~E~~t 316 (440)
T KOG2357|consen 304 QFSGP-IDQEEGET 316 (440)
T ss_pred CCCCC-cccccccc
Confidence 44445 55555544
No 121
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.93 E-value=4.8e+02 Score=30.23 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHHhCC-CCC-ccchHHHHHHHHHHHHHHHH
Q 006613 526 HGLKEGWAWLARFLNA-LPA-NIYTAVALNAFLQLAGFALF 564 (638)
Q Consensus 526 ~gi~~~WkWLARILN~-~P~-~~ita~vL~afLevAG~~Ll 564 (638)
.+...+=+.|.+-||. .|. ..++.+||.+..+.||+.|+
T Consensus 34 ~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh 74 (470)
T KOG1087|consen 34 GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFH 74 (470)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHH
Confidence 4444666666666664 232 34578899999999999998
No 122
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=1e+03 Score=26.01 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=11.3
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 006613 220 QIEERKIRSDAAYEEAKRKE 239 (638)
Q Consensus 220 q~~er~ir~~aa~eEA~rke 239 (638)
+-+-+++|+......|+|+.
T Consensus 117 ~~~k~~~ks~~~~~~a~~r~ 136 (290)
T KOG2689|consen 117 EREKQRRKSGDEMSAAKRRL 136 (290)
T ss_pred hhHHhhhhcccHHHHHHHHH
Confidence 33445556666666666653
No 123
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.69 E-value=3.1e+02 Score=27.45 Aligned_cols=10 Identities=40% Similarity=0.518 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 006613 241 ALQEEKIRQE 250 (638)
Q Consensus 241 a~qee~~rq~ 250 (638)
+.+||++|+-
T Consensus 141 ~~kEe~lr~l 150 (158)
T PF02731_consen 141 EEKEEKLREL 150 (158)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 124
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=21.98 E-value=2.2e+03 Score=29.59 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHhhhc
Q 006613 569 SQFRKILDNIYDNFLNALKA 588 (638)
Q Consensus 569 ~QF~KLL~lI~~d~~p~L~~ 588 (638)
....|.|..-..++.-+|..
T Consensus 1771 e~~k~~LE~~~kdLq~rL~e 1790 (1930)
T KOG0161|consen 1771 ERLKKSLERQVKDLQLRLDE 1790 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543
No 125
>PLN02316 synthase/transferase
Probab=21.81 E-value=2.6e+02 Score=35.34 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 006613 501 LSRLKSYMRLYAALIQ 516 (638)
Q Consensus 501 lkRMtGI~rLYAAIiq 516 (638)
..|+.-+++..+.+++
T Consensus 689 ~~RF~~F~~Aale~l~ 704 (1036)
T PLN02316 689 GERFGFFCHAALEFLL 704 (1036)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577666666655554
No 126
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.91 E-value=1.3e+02 Score=31.07 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=60.9
Q ss_pred HHHHHhhCccH--------------HHHHHHHh-hhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHH
Q 006613 438 IVLVASQVPQV--------------MDILLGEF-HRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLS 502 (638)
Q Consensus 438 ~v~L~~~~Pef--------------~DILLArf-~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~Ese~~Ylk 502 (638)
+..|+..+|+| .|+++.|| +++-|---=.|. .-..-++|.+.+..--.-......+.=..
T Consensus 11 t~~iC~~nP~LC~dLn~Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~-----~l~~le~Y~kCielAa~Iq~i~~~e~k~~ 85 (203)
T PF11207_consen 11 TEQICENNPELCEDLNDDGWCRYERTDLIWHRYELKKNPTDKNKYQ-----LLEALEKYSKCIELAAQIQHIKQKERKTD 85 (203)
T ss_pred HHHHHccCHHHHHHhCcchhhccHhHHHHHHHHHHhcCCchHHHHH-----HHHHHHHHHHHHHHHhcCeeechHhHHHH
Confidence 34556666665 89999999 444222221111 01124566666554332222233445568
Q ss_pred HHHHHHHHHHHHHhcCCC--CCCCCCCcchHHHH--------HHHHhCCCCCccc-hHHHHH
Q 006613 503 RLKSYMRLYAALIQTEIP--GVQNAHGLKEGWAW--------LARFLNALPANIY-TAVALN 553 (638)
Q Consensus 503 RMtGI~rLYAAIiqt~~~--~~~nP~gi~~~WkW--------LARILN~~P~~~i-ta~vL~ 553 (638)
|+.|++.-+-.|.+..-. +.++||- .+|.| +.+||...-.+.+ ++.+..
T Consensus 86 R~~a~~~s~~~l~~L~~~tk~S~dP~l--lYy~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~ 145 (203)
T PF11207_consen 86 RFRALLHSYQELERLQEETKNSQDPYL--LYYHWSRFGDQEALRRFLQLEGTPELETAELQY 145 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCccH--HHHHhhccCcHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999999885533 4455665 46666 4567776433322 455554
No 127
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=20.70 E-value=8.4e+02 Score=24.21 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=12.0
Q ss_pred HhHHHhhhhcchHHHHHHHHHHh
Q 006613 183 DMRREMDRKNDTVYQRKIAEALD 205 (638)
Q Consensus 183 ~~r~e~~r~~~~~~qr~iae~~~ 205 (638)
++|+.|...+..+..+.-..++.
T Consensus 43 e~r~~me~~v~~ele~ek~~~l~ 65 (149)
T PF15346_consen 43 EERKKMEKQVAEELEREKEEALE 65 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444443
No 128
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=20.62 E-value=7.5e+02 Score=25.38 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.6
Q ss_pred ceEEEe
Q 006613 70 AFVIRV 75 (638)
Q Consensus 70 ~fv~r~ 75 (638)
||+.+|
T Consensus 31 P~i~~v 36 (261)
T TIGR01933 31 PFIEEV 36 (261)
T ss_pred CCceEE
Confidence 454433
No 129
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=20.21 E-value=2.3e+02 Score=26.19 Aligned_cols=21 Identities=48% Similarity=0.714 Sum_probs=14.9
Q ss_pred hhhHHhhhHHHHHHHHHHHhhh
Q 006613 207 HLTAVQRDHELKSQIEERKIRS 228 (638)
Q Consensus 207 ~~~~~~r~~e~~~q~~er~ir~ 228 (638)
=+++++||.+++ +.|+.|||+
T Consensus 11 I~~Vl~R~~~l~-~~E~~Ri~k 31 (118)
T PF02318_consen 11 ILQVLQRDEELR-KKEEERIRK 31 (118)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhHHHHH-HHHHHHHHH
Confidence 456888998888 555666754
Done!