Query 006613
Match_columns 638
No_of_seqs 154 out of 201
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 04:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pev_B Nucleoporin GLE1; RECA, 100.0 9.4E-65 3.2E-69 523.9 24.1 266 334-606 5-286 (297)
2 3rk6_A Polyadenylate-binding p 88.0 3.7 0.00013 40.8 11.5 167 371-567 18-195 (234)
3 2vso_E Eukaryotic initiation f 84.6 13 0.00043 37.7 13.5 174 368-567 32-232 (284)
4 1hu3_A EIF4GII; heat repeat, t 83.7 7.6 0.00026 38.8 11.3 175 368-565 7-199 (260)
5 2zuo_A MVP, major vault protei 79.5 25 0.00086 41.2 14.8 32 214-245 681-712 (861)
6 3oja_B Anopheles plasmodium-re 76.5 62 0.0021 35.0 16.4 22 166-187 470-491 (597)
7 2i1j_A Moesin; FERM, coiled-co 75.6 7.3 0.00025 43.6 8.9 28 342-369 511-538 (575)
8 2zuo_A MVP, major vault protei 70.2 1.8E+02 0.006 34.4 20.7 24 215-238 724-747 (861)
9 3vkg_A Dynein heavy chain, cyt 65.0 75 0.0026 42.7 15.8 8 510-517 2411-2418(3245)
10 3iox_A AGI/II, PA; alpha helix 58.0 1.5E+02 0.0052 32.8 14.4 19 298-316 120-138 (497)
11 2i1j_A Moesin; FERM, coiled-co 40.3 57 0.002 36.4 7.9 18 175-192 320-337 (575)
12 3vkg_A Dynein heavy chain, cyt 39.0 6.2E+02 0.021 34.4 17.9 15 176-190 1924-1938(3245)
13 3v6i_A V-type ATP synthase sub 37.3 2.6E+02 0.0089 26.0 11.6 23 485-507 149-173 (187)
14 2dfs_A Myosin-5A; myosin-V, in 29.5 8.1E+02 0.028 29.4 17.8 9 34-42 644-652 (1080)
15 3bc1_B Synaptotagmin-like prot 28.8 52 0.0018 26.6 3.7 23 205-228 9-31 (59)
16 1i84_S Smooth muscle myosin he 28.3 1.8E+02 0.0062 35.0 10.0 15 31-45 663-677 (1184)
17 3bbo_Z Ribosomal protein L29; 24.3 20 0.00067 34.7 0.6 63 149-211 74-137 (173)
18 1i84_S Smooth muscle myosin he 22.2 3E+02 0.01 33.2 10.3 12 147-158 822-833 (1184)
No 1
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=100.00 E-value=9.4e-65 Score=523.93 Aligned_cols=266 Identities=15% Similarity=0.257 Sum_probs=232.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH-HhhhccccccccccccccccccccccccCcchhHHHHHHHHHHHhcCC---CChHH
Q 006613 334 VRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQS 409 (638)
Q Consensus 334 ~~~~~sal~~~~~r~k~LKel~~-~~~~lks~lkk~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~---qlP~~ 409 (638)
|.+.+..+..|+.+++.||..-. ..+..++++|+.++++||+||++|||||+|.+||++|+++|.++|++. ++|+.
T Consensus 5 ~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~ 84 (297)
T 3pev_B 5 FDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYH 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHH
Confidence 78889999999999999987442 333346689999999999999999999999999999999999999865 46688
Q ss_pred HHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcC
Q 006613 410 ISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIG 486 (638)
Q Consensus 410 i~Ln~lAKkIIsQaEt~---~~~sAfPlA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mG 486 (638)
|+||+|||+||+|||++ ++++|||+|.|++.||..||+|+|+||||||++|||+||||++ .+| ++|+++||
T Consensus 85 ~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~t-eegr~~mG 158 (297)
T 3pev_B 85 WILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----IDT-EKGRQNMG 158 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CSS-HHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----ccc-HHHHHHcC
Confidence 99999999999999995 5789999999999999999999999999999999999999964 234 77889999
Q ss_pred ccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCCccc---hHHHHHHHHH
Q 006613 487 YRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIY---TAVALNAFLQ 557 (638)
Q Consensus 487 Yr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~-----~~~nP~gi~~~WkWLARILN~~P~~~i---ta~vL~afLe 557 (638)
|+. +||+||++++|++||+||++|||||+++++| +.+||||++++|+|||||||++|. .+ |++||++||+
T Consensus 159 ~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le 237 (297)
T 3pev_B 159 WKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWD 237 (297)
T ss_dssp CCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHH
T ss_pred CeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHH
Confidence 986 6899999999999999999999999999854 467999999999999999999554 44 4559999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHH
Q 006613 558 LAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 606 (638)
Q Consensus 558 vAG~~Ll~~YG~QF~KLL~lI~~d~~p~L~~~~~~~~~~~v~rLe~~Le 606 (638)
+||++|+++||+||.|||++|.++|+|++++++.+++.++...++.|+.
T Consensus 238 ~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~a~RL~~l~e~~~~ 286 (297)
T 3pev_B 238 AAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVGAARLRILLEAWQN 286 (297)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765554444444444443
No 2
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=87.98 E-value=3.7 Score=40.81 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=104.4
Q ss_pred ccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhC---cc
Q 006613 371 GYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQV---PQ 447 (638)
Q Consensus 371 ~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~~~---Pe 447 (638)
.+.|+|+-.+|.||.+.+....++.+|..+++.. ..-.-.|..+++-|+.++-.+ |..+..+|.++..|.... |.
T Consensus 18 ~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~-~~~~~~L~~vi~lIfekAi~e-p~fs~~YA~LC~~l~~~l~~~~~ 95 (234)
T 3rk6_A 18 TLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGC-VTTDDALQELVELIYQQATSI-PNFSYMGARLCNYLSHHLTISPQ 95 (234)
T ss_dssp CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHHHHSS-TTCHHHHHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCCCCc
Confidence 5788899999999977778888888888886531 111234777888888877653 357888899988886543 43
Q ss_pred ---HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCcccchhhHHHHHHHHHHHHHHHHhc-CCCC-C
Q 006613 448 ---VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQT-EIPG-V 522 (638)
Q Consensus 448 ---f~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~Ese~~YlkRMtGI~rLYAAIiqt-~~~~-~ 522 (638)
|..+|+.+.+.. |- +. ... ... +...-.|+-|.+++-+-+... ...+ .
T Consensus 96 ~~~Fr~lLL~rcQ~e------Fe----~~-----~~~------~~~------d~~~k~r~lg~i~FIgELf~~l~~~~~~ 148 (234)
T 3rk6_A 96 SGNFRQLLLQRCRTE------YE----VK-----DQA------AKG------DEVTRKRFHAFVLFLGELYLNLEIKGTN 148 (234)
T ss_dssp TCCHHHHHHHHHHHH------HT----TH-----HHH------TSS------CHHHHHHHHHHHHHHHHHHHHCCEECTT
T ss_pred hhHHHHHHHHHHHHH------HH----hh-----HHh------hhc------cHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 788888777664 11 00 000 011 124567999999999998863 2211 0
Q ss_pred CCCCCcchHHHHHHHHhCC---CCCccchHHHHHHHHHHHHHHHHHHH
Q 006613 523 QNAHGLKEGWAWLARFLNA---LPANIYTAVALNAFLQLAGFALFKKY 567 (638)
Q Consensus 523 ~nP~gi~~~WkWLARILN~---~P~~~ita~vL~afLevAG~~Ll~~Y 567 (638)
..+....-.=..+-.+|+. .| .+-...++..+|..+|..|-..+
T Consensus 149 ~~~l~e~I~~~ci~~Ll~~l~~~p-~ee~vE~l~~lL~tvG~~Ld~~~ 195 (234)
T 3rk6_A 149 GQVTRADILQVGLRELLNALFSNP-MDDNLICAVKLLKLTGSVLEDAW 195 (234)
T ss_dssp SSEECCHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHHhhcc
Confidence 1122222222234444432 24 44567777889999999988654
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=84.57 E-value=13 Score=37.66 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=95.7
Q ss_pred cccccccccccccccccCcchhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCc
Q 006613 368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPL-CPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVP 446 (638)
Q Consensus 368 ~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~q-lP~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~~~P 446 (638)
.+..++|+|+-.+|.||. +.+..|+.+|..+-.... ....-.+.-+++-|+.++-.+ |..+.-+|.++..|....|
T Consensus 32 ~~e~l~r~vkgiLNKLT~--~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~e-p~fs~~YA~Lc~~l~~~l~ 108 (284)
T 2vso_E 32 DKDEVERKMKSLLNKLTL--EMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDE-PHWSSMYAQLCGKVVKELN 108 (284)
T ss_dssp CHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 466789999999999974 467788888877653210 011112344455555555432 3466677888888776544
Q ss_pred -c--------------HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCcccCCCccc----ch-----hhHHH
Q 006613 447 -Q--------------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIE----SL-----ENYLS 502 (638)
Q Consensus 447 -e--------------f~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYr~~dG~~E----se-----~~Ylk 502 (638)
+ |..+|+.+++.. +-.... .+- .+.+ ++...| ++ ...-.
T Consensus 109 ~~i~~e~~~~k~g~~~Fr~~LL~rcq~e----Fe~~~~-~~~--~~~~----------~~~~~e~e~~~~e~~~~~~~k~ 171 (284)
T 2vso_E 109 PDITDETNEGKTGPKLVLHYLVARCHAE----FDKGWT-DKL--PTNE----------DGTPLEPEMMSEEYYAAASAKR 171 (284)
T ss_dssp TTCCBCC---CCTHHHHHHHHHHHHHHH----HHHCCC-SSC--C----------------------CCTTHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHH----Hhhhhh-hhh--hhcc----------ccchhhhhhhhhHHHHHHHHHH
Confidence 2 334444433322 111000 000 0000 000111 11 23446
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCC--CCccchHHHHHHHHHHHHHHHHHHH
Q 006613 503 RLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNAL--PANIYTAVALNAFLQLAGFALFKKY 567 (638)
Q Consensus 503 RMtGI~rLYAAIiqt~~~~~~nP~gi~~~WkWLARILN~~--P~~~ita~vL~afLevAG~~Ll~~Y 567 (638)
|+-|.+++-+-+.... -.+..-....+..+|+.. .+.+-..-+|..+|.++|..|-..-
T Consensus 172 r~lg~i~FIgeLyk~~------~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~ 232 (284)
T 2vso_E 172 RGLGLVRFIGFLYRLN------LLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDS 232 (284)
T ss_dssp HHHHHHHHHHHHHHTT------SSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHhhHHHHHHHHHhcc------CCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999998643 223334556677777520 1345577888899999999986543
No 4
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=83.70 E-value=7.6 Score=38.78 Aligned_cols=175 Identities=10% Similarity=0.095 Sum_probs=95.6
Q ss_pred cccccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHh-hCc
Q 006613 368 DFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVAS-QVP 446 (638)
Q Consensus 368 ~~~~~rRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKkIIsQaEt~~~~sAfPlA~V~v~L~~-~~P 446 (638)
.+..++|+|+-.+|.||. +.+..|+.+|..+-. ..+ -.+.-++..|+.++-.+ |..+.-+|.++..|.. ..|
T Consensus 7 ~~~~l~r~v~giLNKLT~--~nf~~i~~ql~~~~i--~~~--~~l~~vi~~if~kA~~e-p~f~~~YA~Lc~~L~~~~~p 79 (260)
T 1hu3_A 7 KTQELFRKVRSILNKLTP--QMFNQLMKQVSGLTV--DTE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVP 79 (260)
T ss_dssp HHHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCC--CSH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhhCCH--HHHHHHHHHHHHhcC--CCH--HHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhCC
Confidence 456788999999999995 456677776654321 122 23455566666655443 3356667778877765 355
Q ss_pred c---------HHHHHHHHhhhcceeecccccc--c--ccccc---ccHHHHHHHcCcccCCCcc-cchhhHHHHHHHHHH
Q 006613 447 Q---------VMDILLGEFHRACIYTVPKHIV--F--SEAAF---ESEEAYYKTIGYREEDGKI-ESLENYLSRLKSYMR 509 (638)
Q Consensus 447 e---------f~DILLArf~kkCP~lVP~~~~--~--~k~~~---qTeEey~K~mGYr~~dG~~-Ese~~YlkRMtGI~r 509 (638)
. |+.+|+-+++... --++... . ..... .+.++ .+.+. ..+ +.....-.|+-|.++
T Consensus 80 ~~~~~~~~~~Fr~~LL~rcq~eF--e~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~-----~e~ee~~~~~k~r~lg~i~ 151 (260)
T 1hu3_A 80 MADKPGNTVNFRKLLLNRCQKEF--EKDKADDDVFEKKQKELEAASAPEE-RTRLH-----DELEEAKDKARRRSIGNIK 151 (260)
T ss_dssp ---------CHHHHHHHHHHHHH--HHHTC------------------------------------CCSSHHHHHHHHHH
T ss_pred cccCCccchHHHHHHHHHHHHHH--hcccchhhhHHHHhhhhcccCCHHH-HHHhh-----hHHHHHHHHHHHHHHhHHH
Confidence 4 5566655543321 0011000 0 00000 00000 00000 000 111245578999999
Q ss_pred HHHHHHhcCCCCCCCCCCcchHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 006613 510 LYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFK 565 (638)
Q Consensus 510 LYAAIiqt~~~~~~nP~gi~~~WkWLARILN~~P~~~ita~vL~afLevAG~~Ll~ 565 (638)
+-+-+.... -.+..-....|-.+|.. | ++-..-+|..+|.++|..|-.
T Consensus 152 FIgeLy~~~------~l~~~i~~~~l~~Ll~~-~-~e~~iE~l~~lL~tvG~~L~~ 199 (260)
T 1hu3_A 152 FIGELFKLK------MLTEAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF 199 (260)
T ss_dssp HHHHHHTTT------CSCHHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcC------CCCHHHHHHHHHHHhCC-C-CHHHHHHHHHHHHHHHHHHhC
Confidence 999988643 23333456677777775 4 445678888999999999875
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=79.47 E-value=25 Score=41.21 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006613 214 DHELKSQIEERKIRSDAAYEEAKRKERALQEE 245 (638)
Q Consensus 214 ~~e~~~q~~er~ir~~aa~eEA~rke~a~qee 245 (638)
+.|.|-.+|-.||.++++.|++|++=-.+|-+
T Consensus 681 eQea~g~Lerqki~d~a~aE~~r~~Llel~a~ 712 (861)
T 2zuo_A 681 EQEARGRLERQKILDQSEAEKARKELLELEAM 712 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677777777777776654444433
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.47 E-value=62 Score=35.02 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=9.7
Q ss_pred hHhhhhHHHHHhhHHHHHhHHH
Q 006613 166 SENEQSNSALAQVEKDRDMRRE 187 (638)
Q Consensus 166 ~e~~~~~~~~~~~~k~~~~r~e 187 (638)
++.+.....+...+++-+.+++
T Consensus 470 ~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 470 NEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 3344444444444444444443
No 7
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.58 E-value=7.3 Score=43.57 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccc
Q 006613 342 NIEQKRLQKLKELDEENQSLKLSSNEDF 369 (638)
Q Consensus 342 ~~~~~r~k~LKel~~~~~~lks~lkk~~ 369 (638)
+.-++..+.|+.|...+..++...+++=
T Consensus 511 ekn~~lq~qL~~L~~el~~~r~~~k~t~ 538 (575)
T 2i1j_A 511 ERNERLHNQLKALKQDLARSCDETKETA 538 (575)
T ss_dssp HHCHHHHHHHHHHHHHHHTTBCGGGCCH
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhcch
Confidence 3334446689999998888776555443
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=70.17 E-value=1.8e+02 Score=34.37 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 006613 215 HELKSQIEERKIRSDAAYEEAKRK 238 (638)
Q Consensus 215 ~e~~~q~~er~ir~~aa~eEA~rk 238 (638)
.|..+..|..+|-.+++.+.|+=|
T Consensus 724 AeA~a~aea~~Ie~ea~v~~a~l~ 747 (861)
T 2zuo_A 724 AEAESRAEAARIEGEGSVLQAKLK 747 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhh
Confidence 344555666666666666666544
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.99 E-value=75 Score=42.68 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=4.6
Q ss_pred HHHHHHhc
Q 006613 510 LYAALIQT 517 (638)
Q Consensus 510 LYAAIiqt 517 (638)
||+.|...
T Consensus 2411 LyF~i~dL 2418 (3245)
T 3vkg_A 2411 VYFAMEEL 2418 (3245)
T ss_dssp HHHHHTGG
T ss_pred HHHHHHHH
Confidence 56666543
No 10
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=57.99 E-value=1.5e+02 Score=32.83 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=9.6
Q ss_pred cccCCCCCCCCCCcccccc
Q 006613 298 VSQDGACGRQPDDSSVIAG 316 (638)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~ 316 (638)
.+|.=.=..-|++...|.|
T Consensus 120 ~aQ~Lvf~sEpnA~lsi~~ 138 (497)
T 3iox_A 120 SAQNLVYDLEPNANLSLTT 138 (497)
T ss_dssp CCBCEECSCCTTCEEEEEE
T ss_pred hcccceecCCCCceEEEec
Confidence 4444444444566665554
No 11
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=40.28 E-value=57 Score=36.43 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=11.0
Q ss_pred HHhhHHHHHhHHHhhhhc
Q 006613 175 LAQVEKDRDMRREMDRKN 192 (638)
Q Consensus 175 ~~~~~k~~~~r~e~~r~~ 192 (638)
..++.+++.+|.+++|..
T Consensus 320 ~~~l~~~~~~~~~~~~~~ 337 (575)
T 2i1j_A 320 REKLQLEIAARERAEKKQ 337 (575)
T ss_dssp HTTCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 345555666777776654
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.98 E-value=6.2e+02 Score=34.39 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=8.8
Q ss_pred HhhHHHHHhHHHhhh
Q 006613 176 AQVEKDRDMRREMDR 190 (638)
Q Consensus 176 ~~~~k~~~~r~e~~r 190 (638)
.+++|=.+|...++.
T Consensus 1924 ~GL~KL~et~~~V~~ 1938 (3245)
T 3vkg_A 1924 IGLKKLRDTEAQVKD 1938 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655544
No 13
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=37.26 E-value=2.6e+02 Score=26.05 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=12.8
Q ss_pred cCccc--CCCcccchhhHHHHHHHH
Q 006613 485 IGYRE--EDGKIESLENYLSRLKSY 507 (638)
Q Consensus 485 mGYr~--~dG~~Ese~~YlkRMtGI 507 (638)
+|... .||++.=.-+|..||.-+
T Consensus 149 GGvil~~~dG~I~vdnTle~rL~~~ 173 (187)
T 3v6i_A 149 LGVRAVGAEGKTQVENSLLARLDRA 173 (187)
T ss_dssp SEEEEECTTSSCEEEEEHHHHHHHH
T ss_pred CceEEEeCCCCEEEECCHHHHHHHH
Confidence 56664 356655555666665443
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.45 E-value=8.1e+02 Score=29.43 Aligned_cols=9 Identities=44% Similarity=0.468 Sum_probs=3.6
Q ss_pred HHHHHHHhc
Q 006613 34 LNSLETRLN 42 (638)
Q Consensus 34 ~~~~~~~~~ 42 (638)
|+.|-.+|+
T Consensus 644 L~~Lm~~L~ 652 (1080)
T 2dfs_A 644 LHLLMETLN 652 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 15
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=28.76 E-value=52 Score=26.59 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=17.8
Q ss_pred hhhhhHHhhhHHHHHHHHHHHhhh
Q 006613 205 DNHLTAVQRDHELKSQIEERKIRS 228 (638)
Q Consensus 205 ~~~~~~~~r~~e~~~q~~er~ir~ 228 (638)
+.=+.+++||.+++ +.|+.|||+
T Consensus 9 ~~IL~VL~RD~~lr-~~ee~RIrk 31 (59)
T 3bc1_B 9 EAIMKVLQRDAALK-RAEEERVRH 31 (59)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhhHHHHh-hChHHHHHH
Confidence 34567889999998 677888874
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=28.33 E-value=1.8e+02 Score=35.01 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhccCC
Q 006613 31 LSELNSLETRLNASS 45 (638)
Q Consensus 31 ~~e~~~~~~~~~~~~ 45 (638)
..-|+.|-.+|+...
T Consensus 663 ~~~l~~L~~~l~~t~ 677 (1184)
T 1i84_S 663 KEQLTKLMTTLRNTN 677 (1184)
T ss_dssp HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHhcC
Confidence 345666666666554
No 17
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.33 E-value=20 Score=34.67 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHhHh-hhhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHH
Q 006613 149 VKEEIRNLISTLETQLISEN-EQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAV 211 (638)
Q Consensus 149 ~~e~~r~~~~~~e~~~~~e~-~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~iae~~~~~~~~~ 211 (638)
-.+|+..++..|..+|.+-. |....-+...-+-+..|+.|.|.++..-||+.+++-+++.+..
T Consensus 74 S~eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk 137 (173)
T 3bbo_Z 74 TTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRK 137 (173)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 35777777777776666542 3333334555677899999999999999999988877776653
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.23 E-value=3e+02 Score=33.16 Aligned_cols=12 Identities=8% Similarity=0.470 Sum_probs=6.6
Q ss_pred cccHHHHHHHHH
Q 006613 147 LGVKEEIRNLIS 158 (638)
Q Consensus 147 ~~~~e~~r~~~~ 158 (638)
+.+|--+|.++.
T Consensus 822 ~~iQ~~~r~~~~ 833 (1184)
T 1i84_S 822 FCIQYNVRSFMN 833 (1184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345666666543
Done!