Query 006614
Match_columns 638
No_of_seqs 819 out of 3572
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 11:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-70 2.4E-75 591.3 69.0 502 123-630 368-895 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.9E-70 6.2E-75 588.1 67.7 509 102-618 383-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 3.7E-69 7.9E-74 592.5 57.6 494 120-636 182-676 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 6.7E-69 1.5E-73 590.4 57.8 510 102-636 134-644 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-63 2.4E-68 536.1 52.7 474 122-614 84-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.9E-63 1.7E-67 529.6 53.4 500 100-618 98-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.4E-31 7.4E-36 299.2 70.7 517 100-636 374-890 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-30 2.3E-35 295.2 68.7 512 102-632 308-819 (899)
9 PRK11447 cellulose synthase su 100.0 9.3E-23 2E-27 230.6 66.2 549 73-636 41-730 (1157)
10 PRK11447 cellulose synthase su 100.0 2.7E-22 5.8E-27 226.8 65.8 549 48-614 50-744 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 9.5E-22 2.1E-26 188.0 37.1 429 128-609 51-483 (966)
12 PRK09782 bacteriophage N4 rece 99.9 3.2E-19 6.8E-24 192.7 59.4 506 102-636 57-696 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.4E-20 3E-25 180.2 41.1 435 103-593 62-501 (966)
14 KOG2002 TPR-containing nuclear 99.9 2E-18 4.3E-23 174.4 52.2 498 105-613 252-800 (1018)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-18 2.6E-23 185.2 52.4 429 127-575 129-570 (615)
16 PRK09782 bacteriophage N4 rece 99.9 3.4E-17 7.5E-22 177.1 62.1 542 49-617 67-710 (987)
17 PRK11788 tetratricopeptide rep 99.9 4.7E-20 1E-24 186.3 36.7 303 132-443 42-354 (389)
18 PRK11788 tetratricopeptide rep 99.9 9E-20 1.9E-24 184.3 36.3 308 237-583 41-354 (389)
19 KOG2002 TPR-containing nuclear 99.9 7.8E-18 1.7E-22 170.1 47.3 518 105-635 146-734 (1018)
20 PRK15174 Vi polysaccharide exp 99.9 9.5E-18 2.1E-22 177.6 49.0 334 127-471 44-381 (656)
21 PRK15174 Vi polysaccharide exp 99.9 2.8E-17 6.1E-22 174.0 48.5 334 163-506 45-381 (656)
22 TIGR00990 3a0801s09 mitochondr 99.9 5.1E-17 1.1E-21 172.8 50.4 432 161-611 128-571 (615)
23 PRK10049 pgaA outer membrane p 99.9 1.5E-16 3.2E-21 172.3 53.1 418 156-623 11-466 (765)
24 PRK10049 pgaA outer membrane p 99.9 6.7E-17 1.4E-21 175.0 49.0 406 122-541 12-456 (765)
25 PRK14574 hmsH outer membrane p 99.9 8.9E-16 1.9E-20 162.8 55.2 458 119-611 28-513 (822)
26 KOG2003 TPR repeat-containing 99.9 8E-18 1.7E-22 155.6 34.2 486 126-633 202-710 (840)
27 PRK14574 hmsH outer membrane p 99.8 3.8E-15 8.3E-20 158.0 57.5 441 101-575 46-512 (822)
28 KOG4422 Uncharacterized conser 99.8 2.1E-14 4.6E-19 132.3 41.2 445 127-613 118-592 (625)
29 KOG4422 Uncharacterized conser 99.8 6.2E-14 1.3E-18 129.3 41.3 460 103-603 129-617 (625)
30 KOG2076 RNA polymerase III tra 99.8 4.5E-13 9.8E-18 135.3 50.7 480 125-611 139-695 (895)
31 KOG0495 HAT repeat protein [RN 99.8 3.8E-12 8.2E-17 123.9 53.4 497 106-631 363-865 (913)
32 KOG2003 TPR repeat-containing 99.8 3.1E-15 6.6E-20 138.7 29.0 445 106-561 218-708 (840)
33 KOG2076 RNA polymerase III tra 99.7 4.4E-12 9.6E-17 128.3 51.2 360 101-467 151-551 (895)
34 KOG0495 HAT repeat protein [RN 99.7 3.3E-11 7.2E-16 117.5 51.3 454 137-609 418-878 (913)
35 KOG1915 Cell cycle control pro 99.7 1.2E-11 2.6E-16 116.0 46.6 438 161-611 74-536 (677)
36 KOG1915 Cell cycle control pro 99.7 8E-11 1.7E-15 110.6 50.2 458 101-575 85-584 (677)
37 KOG1155 Anaphase-promoting com 99.7 2.3E-11 5.1E-16 113.9 41.8 383 229-631 162-554 (559)
38 KOG0547 Translocase of outer m 99.6 1.1E-11 2.3E-16 116.8 33.1 423 127-575 117-565 (606)
39 PRK10747 putative protoheme IX 99.6 1.7E-11 3.7E-16 122.6 37.2 289 138-469 97-388 (398)
40 KOG1155 Anaphase-promoting com 99.6 1.5E-10 3.2E-15 108.6 40.2 383 190-610 159-552 (559)
41 PRK10747 putative protoheme IX 99.6 1.2E-11 2.5E-16 123.8 35.7 287 208-538 97-387 (398)
42 KOG1173 Anaphase-promoting com 99.6 1.9E-10 4.1E-15 110.8 41.4 289 332-629 240-534 (611)
43 TIGR00540 hemY_coli hemY prote 99.6 1.2E-11 2.5E-16 124.5 35.1 292 206-538 95-396 (409)
44 COG2956 Predicted N-acetylgluc 99.6 8.9E-12 1.9E-16 111.4 29.3 301 126-436 37-347 (389)
45 TIGR00540 hemY_coli hemY prote 99.6 2.1E-11 4.5E-16 122.7 35.3 287 173-468 97-396 (409)
46 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.8E-19 137.0 13.1 258 272-537 14-273 (280)
47 KOG0547 Translocase of outer m 99.6 6.9E-11 1.5E-15 111.5 34.6 420 166-610 121-565 (606)
48 KOG3785 Uncharacterized conser 99.6 1.8E-10 3.9E-15 104.2 35.6 454 132-621 29-498 (557)
49 KOG2047 mRNA splicing factor [ 99.5 1.5E-08 3.3E-13 99.2 48.8 402 126-540 103-614 (835)
50 KOG1173 Anaphase-promoting com 99.5 6.8E-10 1.5E-14 107.0 39.2 285 299-592 242-532 (611)
51 PF13429 TPR_15: Tetratricopep 99.5 7E-14 1.5E-18 133.6 12.4 230 125-361 44-273 (280)
52 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.9E-15 105.9 34.0 293 208-540 97-389 (400)
53 KOG1156 N-terminal acetyltrans 99.5 9.3E-09 2E-13 101.0 45.7 423 135-574 51-509 (700)
54 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.9E-16 121.1 25.9 284 176-506 335-620 (638)
55 KOG1126 DNA-binding cell divis 99.5 1.3E-11 2.9E-16 121.1 25.8 285 316-612 334-621 (638)
56 KOG4318 Bicoid mRNA stability 99.5 7.1E-11 1.5E-15 119.2 31.2 247 116-383 16-283 (1088)
57 KOG1156 N-terminal acetyltrans 99.5 8.7E-09 1.9E-13 101.1 44.5 462 128-609 11-509 (700)
58 COG2956 Predicted N-acetylgluc 99.5 2.9E-10 6.3E-15 101.9 31.3 225 161-390 37-268 (389)
59 COG3071 HemY Uncharacterized e 99.5 4.3E-10 9.4E-15 104.0 33.5 287 172-470 96-389 (400)
60 KOG2376 Signal recognition par 99.5 4.3E-09 9.4E-14 102.1 39.1 418 163-631 15-506 (652)
61 KOG3785 Uncharacterized conser 99.4 1E-09 2.3E-14 99.4 31.7 431 168-633 30-477 (557)
62 KOG2047 mRNA splicing factor [ 99.4 3.1E-08 6.8E-13 97.1 43.3 451 159-625 101-630 (835)
63 TIGR02521 type_IV_pilW type IV 99.4 3.4E-10 7.5E-15 105.4 27.3 199 125-327 31-229 (234)
64 PRK12370 invasion protein regu 99.4 2.6E-10 5.6E-15 119.3 29.0 266 124-402 255-536 (553)
65 TIGR02521 type_IV_pilW type IV 99.4 3.2E-10 6.9E-15 105.6 26.9 202 158-364 29-231 (234)
66 KOG1129 TPR repeat-containing 99.4 5.9E-11 1.3E-15 106.2 19.5 230 129-366 227-459 (478)
67 KOG1174 Anaphase-promoting com 99.4 1.2E-07 2.7E-12 88.1 41.5 274 332-618 228-505 (564)
68 PRK12370 invasion protein regu 99.4 1.4E-09 3E-14 113.9 33.3 268 157-437 253-536 (553)
69 PF12569 NARP1: NMDA receptor- 99.4 5.8E-09 1.3E-13 105.3 35.0 130 444-575 196-333 (517)
70 KOG2376 Signal recognition par 99.3 1.3E-07 2.7E-12 92.2 40.7 448 130-608 17-517 (652)
71 PF12569 NARP1: NMDA receptor- 99.3 2.1E-07 4.5E-12 94.2 43.1 295 130-435 9-333 (517)
72 PF13041 PPR_2: PPR repeat fam 99.3 4.6E-12 9.9E-17 84.3 6.7 50 580-629 1-50 (50)
73 KOG4162 Predicted calmodulin-b 99.3 5.6E-08 1.2E-12 97.6 38.1 425 157-610 320-782 (799)
74 KOG4162 Predicted calmodulin-b 99.3 5.4E-08 1.2E-12 97.7 36.4 435 118-575 316-782 (799)
75 PF13041 PPR_2: PPR repeat fam 99.3 1.2E-11 2.6E-16 82.3 6.6 49 510-558 1-49 (50)
76 KOG4318 Bicoid mRNA stability 99.3 5.4E-08 1.2E-12 98.9 35.1 476 122-628 80-641 (1088)
77 KOG1840 Kinesin light chain [C 99.3 5.4E-09 1.2E-13 104.1 27.3 244 266-539 199-477 (508)
78 KOG3617 WD40 and TPR repeat-co 99.2 7.5E-07 1.6E-11 90.0 40.2 347 102-501 741-1169(1416)
79 KOG0985 Vesicle coat protein c 99.2 2E-06 4.4E-11 88.8 43.6 147 476-637 1103-1269(1666)
80 KOG4340 Uncharacterized conser 99.2 2.3E-07 4.9E-12 82.6 31.8 292 127-432 12-335 (459)
81 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.9E-13 101.3 27.4 244 161-434 200-477 (508)
82 KOG1129 TPR repeat-containing 99.2 2.7E-09 5.8E-14 95.8 20.0 229 375-610 227-457 (478)
83 PRK11189 lipoprotein NlpI; Pro 99.2 4.6E-08 9.9E-13 93.7 28.1 198 125-332 64-267 (296)
84 COG3063 PilF Tfp pilus assembl 99.2 4.2E-08 9.1E-13 84.3 24.0 197 163-364 38-235 (250)
85 KOG1127 TPR repeat-containing 99.1 7.7E-07 1.7E-11 92.0 36.3 494 106-622 475-1008(1238)
86 COG3063 PilF Tfp pilus assembl 99.1 4.8E-08 1E-12 83.9 23.6 208 409-622 37-245 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.1 4E-08 8.7E-13 94.1 26.2 233 132-375 33-274 (296)
88 KOG1174 Anaphase-promoting com 99.1 5.9E-06 1.3E-10 77.3 37.6 302 229-541 192-500 (564)
89 KOG1914 mRNA cleavage and poly 99.1 1.1E-05 2.5E-10 78.1 41.6 439 122-610 17-500 (656)
90 cd05804 StaR_like StaR_like; a 99.1 7.3E-07 1.6E-11 88.9 35.0 156 203-364 51-214 (355)
91 KOG0985 Vesicle coat protein c 99.0 2.8E-05 6.1E-10 80.8 42.1 22 122-143 869-890 (1666)
92 KOG4340 Uncharacterized conser 99.0 5.2E-07 1.1E-11 80.4 26.0 417 162-611 12-443 (459)
93 KOG0548 Molecular co-chaperone 99.0 6.6E-06 1.4E-10 79.8 35.0 104 133-241 10-114 (539)
94 cd05804 StaR_like StaR_like; a 99.0 3.7E-06 8E-11 83.9 34.4 201 124-330 5-215 (355)
95 KOG0548 Molecular co-chaperone 99.0 7.3E-06 1.6E-10 79.5 32.7 383 102-506 15-455 (539)
96 PRK04841 transcriptional regul 99.0 1E-05 2.3E-10 91.5 40.2 370 201-576 347-760 (903)
97 KOG0624 dsRNA-activated protei 99.0 1.9E-05 4.2E-10 72.1 33.1 331 123-506 36-370 (504)
98 PRK04841 transcriptional regul 98.9 1.5E-05 3.2E-10 90.3 40.4 372 238-612 348-761 (903)
99 KOG1127 TPR repeat-containing 98.9 3.1E-05 6.6E-10 80.6 37.5 469 141-634 474-984 (1238)
100 KOG3616 Selective LIM binding 98.9 9.8E-06 2.1E-10 81.2 31.5 266 272-575 738-1023(1636)
101 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 3.8E-12 88.2 18.1 148 451-609 111-263 (290)
102 PF04733 Coatomer_E: Coatomer 98.9 1.7E-07 3.6E-12 88.4 17.4 250 135-400 11-264 (290)
103 KOG0624 dsRNA-activated protei 98.8 0.00011 2.3E-09 67.4 33.9 316 194-542 37-371 (504)
104 KOG1125 TPR repeat-containing 98.8 1.2E-06 2.6E-11 85.5 21.6 218 274-501 293-522 (579)
105 PLN02789 farnesyltranstransfer 98.8 6.5E-06 1.4E-10 78.7 26.6 215 127-348 39-267 (320)
106 COG5010 TadD Flp pilus assembl 98.8 1.9E-06 4.1E-11 76.1 20.3 178 143-328 52-229 (257)
107 KOG3617 WD40 and TPR repeat-co 98.8 0.00036 7.8E-09 71.4 42.9 209 196-433 913-1171(1416)
108 KOG3616 Selective LIM binding 98.7 2E-05 4.3E-10 79.1 27.6 136 344-502 740-875 (1636)
109 KOG1914 mRNA cleavage and poly 98.7 0.00044 9.5E-09 67.5 39.6 414 192-634 17-489 (656)
110 PF12854 PPR_1: PPR repeat 98.7 2.5E-08 5.4E-13 59.3 4.0 32 577-608 2-33 (34)
111 PLN02789 farnesyltranstransfer 98.7 3.1E-05 6.8E-10 74.1 26.4 211 95-313 43-267 (320)
112 PF12854 PPR_1: PPR repeat 98.7 4.2E-08 9.2E-13 58.3 4.3 32 542-573 2-33 (34)
113 KOG2053 Mitochondrial inherita 98.6 0.001 2.2E-08 69.2 49.2 222 103-333 23-258 (932)
114 KOG1125 TPR repeat-containing 98.6 9.8E-06 2.1E-10 79.4 22.3 248 134-388 294-559 (579)
115 TIGR03302 OM_YfiO outer membra 98.6 7.4E-06 1.6E-10 76.1 21.2 188 122-330 30-232 (235)
116 KOG1128 Uncharacterized conser 98.6 2E-05 4.3E-10 79.4 24.7 189 409-610 426-615 (777)
117 KOG2053 Mitochondrial inherita 98.6 0.0011 2.4E-08 68.8 48.6 223 136-366 20-256 (932)
118 KOG1070 rRNA processing protei 98.6 2.4E-05 5.3E-10 84.1 26.2 203 124-333 1457-1666(1710)
119 KOG3081 Vesicle coat complex C 98.6 5.3E-05 1.1E-09 67.1 23.8 247 137-401 20-271 (299)
120 TIGR03302 OM_YfiO outer membra 98.6 6.8E-06 1.5E-10 76.4 20.2 190 157-366 30-233 (235)
121 PRK14720 transcript cleavage f 98.6 2.3E-05 5E-10 83.6 25.9 239 157-453 28-268 (906)
122 PRK15179 Vi polysaccharide bio 98.6 1.5E-05 3.3E-10 84.2 24.2 150 119-273 80-229 (694)
123 KOG1070 rRNA processing protei 98.6 5.8E-05 1.2E-09 81.4 27.5 232 336-572 1458-1696(1710)
124 KOG3081 Vesicle coat complex C 98.6 3.9E-05 8.4E-10 67.9 21.9 173 392-575 93-270 (299)
125 PRK15179 Vi polysaccharide bio 98.6 3.5E-05 7.6E-10 81.5 26.1 238 124-384 27-268 (694)
126 PRK15359 type III secretion sy 98.5 1.1E-05 2.5E-10 67.7 16.8 95 198-295 27-121 (144)
127 PRK10370 formate-dependent nit 98.5 3E-05 6.5E-10 69.0 19.7 120 173-296 52-174 (198)
128 KOG1128 Uncharacterized conser 98.5 9.1E-06 2E-10 81.7 17.4 225 119-365 392-616 (777)
129 PRK10370 formate-dependent nit 98.5 4.1E-05 8.9E-10 68.1 20.1 120 208-331 52-174 (198)
130 COG5010 TadD Flp pilus assembl 98.4 4.8E-05 1E-09 67.4 19.4 164 194-363 66-229 (257)
131 PRK14720 transcript cleavage f 98.4 0.00021 4.5E-09 76.5 27.6 238 300-593 30-268 (906)
132 PRK15359 type III secretion sy 98.4 1.8E-05 3.8E-10 66.5 15.2 96 128-225 27-122 (144)
133 COG4783 Putative Zn-dependent 98.4 0.00018 3.8E-09 69.6 22.6 110 454-567 318-428 (484)
134 KOG3060 Uncharacterized conser 98.3 0.00057 1.2E-08 60.3 22.9 165 162-331 54-221 (289)
135 COG4783 Putative Zn-dependent 98.3 0.00046 9.9E-09 66.9 22.8 147 126-295 307-454 (484)
136 KOG3060 Uncharacterized conser 98.3 0.0012 2.6E-08 58.3 23.0 180 392-575 32-219 (289)
137 TIGR02552 LcrH_SycD type III s 98.2 7.2E-05 1.6E-09 62.5 14.9 94 163-259 20-113 (135)
138 TIGR02552 LcrH_SycD type III s 98.2 7.4E-05 1.6E-09 62.4 14.7 103 122-226 14-116 (135)
139 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.7E-09 60.9 15.1 124 127-255 14-142 (145)
140 TIGR00756 PPR pentatricopeptid 98.1 6E-06 1.3E-10 50.0 4.2 33 584-616 2-34 (35)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00015 3.2E-09 70.9 15.8 126 161-293 170-295 (395)
142 KOG2041 WD40 repeat protein [G 98.1 0.019 4.2E-07 58.2 30.0 205 123-362 690-904 (1189)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00029 6.3E-09 68.9 16.2 124 234-363 172-295 (395)
144 PF09976 TPR_21: Tetratricopep 98.0 0.0006 1.3E-08 57.5 16.3 117 208-326 24-143 (145)
145 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.8E-10 48.4 4.4 33 514-546 2-34 (35)
146 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 3.1E-10 47.9 4.4 33 583-615 2-34 (34)
147 KOG0550 Molecular chaperone (D 97.9 0.02 4.4E-07 54.5 25.9 288 168-507 57-351 (486)
148 COG4700 Uncharacterized protei 97.9 0.005 1.1E-07 51.7 18.8 103 157-259 86-188 (251)
149 PF10037 MRP-S27: Mitochondria 97.9 0.00024 5.2E-09 69.7 12.9 123 473-595 62-186 (429)
150 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.5E-09 69.6 13.0 125 436-560 60-186 (429)
151 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.1E-10 46.0 4.5 32 514-545 3-34 (34)
152 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00078 1.7E-08 54.6 13.9 98 128-225 5-106 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.001 2.2E-08 54.0 13.8 27 269-295 79-105 (119)
154 PRK10866 outer membrane biogen 97.8 0.018 3.9E-07 53.1 23.1 184 159-363 31-239 (243)
155 cd00189 TPR Tetratricopeptide 97.8 0.00051 1.1E-08 52.9 11.5 89 201-292 6-94 (100)
156 PF08579 RPM2: Mitochondrial r 97.7 0.00068 1.5E-08 51.8 10.9 76 554-629 32-116 (120)
157 PF08579 RPM2: Mitochondrial r 97.7 0.00047 1E-08 52.7 10.0 78 306-383 30-116 (120)
158 PF01535 PPR: PPR repeat; Int 97.7 4E-05 8.8E-10 44.7 3.4 30 584-613 2-31 (31)
159 cd00189 TPR Tetratricopeptide 97.7 0.00059 1.3E-08 52.5 11.3 94 128-223 3-96 (100)
160 PRK10866 outer membrane biogen 97.7 0.018 3.9E-07 53.1 22.0 184 124-328 31-239 (243)
161 KOG0553 TPR repeat-containing 97.7 0.0019 4.2E-08 58.7 14.9 98 168-270 89-186 (304)
162 PF12895 Apc3: Anaphase-promot 97.7 7.8E-05 1.7E-09 56.0 5.0 20 201-220 31-50 (84)
163 PRK15363 pathogenicity island 97.7 0.0015 3.3E-08 54.0 12.6 97 161-260 36-132 (157)
164 PRK02603 photosystem I assembl 97.6 0.0034 7.4E-08 54.8 15.6 91 124-215 34-126 (172)
165 PRK02603 photosystem I assembl 97.6 0.0027 5.9E-08 55.4 14.8 131 159-316 34-166 (172)
166 PLN03088 SGT1, suppressor of 97.6 0.0018 3.9E-08 63.8 14.7 91 133-225 10-100 (356)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00014 2.9E-09 54.7 5.3 80 525-607 2-83 (84)
168 PF01535 PPR: PPR repeat; Int 97.6 8.6E-05 1.9E-09 43.2 3.3 26 515-540 3-28 (31)
169 PLN03088 SGT1, suppressor of 97.6 0.002 4.4E-08 63.3 14.7 91 167-260 9-99 (356)
170 PF14938 SNAP: Soluble NSF att 97.6 0.011 2.4E-07 56.3 19.3 130 409-540 37-183 (282)
171 PF05843 Suf: Suppressor of fo 97.5 0.0017 3.8E-08 61.4 13.4 132 126-259 2-135 (280)
172 PF05843 Suf: Suppressor of fo 97.5 0.0026 5.7E-08 60.2 14.5 131 408-541 2-136 (280)
173 CHL00033 ycf3 photosystem I as 97.5 0.0016 3.5E-08 56.6 12.2 63 162-224 37-101 (168)
174 CHL00033 ycf3 photosystem I as 97.5 0.0026 5.6E-08 55.3 13.2 95 512-607 35-138 (168)
175 PF12688 TPR_5: Tetratrico pep 97.5 0.0079 1.7E-07 48.0 14.2 59 166-224 7-67 (120)
176 KOG0553 TPR repeat-containing 97.5 0.0065 1.4E-07 55.4 15.1 102 275-380 90-191 (304)
177 KOG2041 WD40 repeat protein [G 97.5 0.17 3.8E-06 51.7 29.4 177 156-361 688-877 (1189)
178 PRK15363 pathogenicity island 97.5 0.0033 7.1E-08 52.1 11.9 96 267-364 36-131 (157)
179 PF06239 ECSIT: Evolutionarily 97.4 0.0019 4.2E-08 56.1 10.8 88 509-596 44-152 (228)
180 KOG0550 Molecular chaperone (D 97.4 0.047 1E-06 52.2 20.4 54 275-329 58-111 (486)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.14 3.1E-06 49.5 40.5 150 477-632 397-550 (660)
182 PF14938 SNAP: Soluble NSF att 97.4 0.015 3.3E-07 55.3 17.8 92 238-330 121-225 (282)
183 PF13525 YfiO: Outer membrane 97.4 0.016 3.4E-07 52.1 16.9 175 161-355 6-197 (203)
184 PRK10153 DNA-binding transcrip 97.4 0.011 2.5E-07 60.8 17.9 144 402-575 332-481 (517)
185 KOG2796 Uncharacterized conser 97.4 0.097 2.1E-06 46.9 20.6 181 135-332 132-317 (366)
186 PF06239 ECSIT: Evolutionarily 97.4 0.0056 1.2E-07 53.3 12.7 104 229-351 45-153 (228)
187 PRK10153 DNA-binding transcrip 97.4 0.02 4.3E-07 59.1 19.1 138 190-331 332-483 (517)
188 COG4700 Uncharacterized protei 97.3 0.073 1.6E-06 45.0 19.2 134 122-258 86-220 (251)
189 PF13432 TPR_16: Tetratricopep 97.3 0.00086 1.9E-08 47.3 6.5 58 167-225 4-61 (65)
190 PF12688 TPR_5: Tetratrico pep 97.3 0.015 3.3E-07 46.5 13.9 109 129-242 5-117 (120)
191 PF14559 TPR_19: Tetratricopep 97.2 0.0011 2.5E-08 47.2 6.3 50 173-223 4-53 (68)
192 PF14559 TPR_19: Tetratricopep 97.2 0.0013 2.8E-08 46.9 6.1 53 206-260 2-54 (68)
193 KOG1130 Predicted G-alpha GTPa 97.2 0.011 2.3E-07 56.1 13.2 132 479-610 197-343 (639)
194 PF07079 DUF1347: Protein of u 97.1 0.29 6.3E-06 47.7 46.8 456 134-624 15-532 (549)
195 PF13414 TPR_11: TPR repeat; P 97.1 0.002 4.3E-08 46.1 6.6 59 197-257 5-64 (69)
196 PF13525 YfiO: Outer membrane 97.1 0.083 1.8E-06 47.4 18.5 176 125-320 5-197 (203)
197 KOG1130 Predicted G-alpha GTPa 97.1 0.017 3.8E-07 54.8 13.9 96 409-504 237-342 (639)
198 COG4235 Cytochrome c biogenesi 97.1 0.031 6.8E-07 51.4 15.3 99 230-330 155-256 (287)
199 PF13432 TPR_16: Tetratricopep 97.1 0.0026 5.7E-08 44.8 6.8 58 201-260 3-60 (65)
200 COG4235 Cytochrome c biogenesi 97.1 0.018 4E-07 52.9 13.6 100 124-225 155-257 (287)
201 PF13414 TPR_11: TPR repeat; P 97.1 0.0029 6.4E-08 45.2 7.1 65 159-224 2-67 (69)
202 KOG2796 Uncharacterized conser 97.0 0.23 5E-06 44.6 22.4 143 233-378 179-326 (366)
203 PRK10803 tol-pal system protei 97.0 0.019 4E-07 53.5 13.4 89 171-259 154-245 (263)
204 KOG1538 Uncharacterized conser 96.9 0.32 7E-06 49.4 21.1 87 444-541 749-846 (1081)
205 PRK10803 tol-pal system protei 96.8 0.029 6.3E-07 52.2 13.0 98 198-295 146-246 (263)
206 COG4105 ComL DNA uptake lipopr 96.8 0.41 8.8E-06 43.3 20.8 181 163-364 37-232 (254)
207 PF12921 ATP13: Mitochondrial 96.7 0.041 8.8E-07 44.5 11.7 54 577-630 47-101 (126)
208 PF13371 TPR_9: Tetratricopept 96.7 0.008 1.7E-07 43.5 7.1 56 169-225 4-59 (73)
209 PF04840 Vps16_C: Vps16, C-ter 96.7 0.63 1.4E-05 44.8 30.1 22 234-255 3-24 (319)
210 COG3898 Uncharacterized membra 96.7 0.65 1.4E-05 44.4 34.8 217 103-336 67-298 (531)
211 PF13281 DUF4071: Domain of un 96.7 0.65 1.4E-05 45.2 21.1 99 126-224 142-255 (374)
212 PRK15331 chaperone protein Sic 96.6 0.16 3.6E-06 42.5 14.5 95 163-260 40-134 (165)
213 KOG2114 Vacuolar assembly/sort 96.6 1.3 2.9E-05 46.7 29.1 179 162-362 336-516 (933)
214 PF13424 TPR_12: Tetratricopep 96.5 0.01 2.2E-07 43.6 6.3 61 197-257 7-72 (78)
215 PF03704 BTAD: Bacterial trans 96.4 0.034 7.3E-07 47.0 10.0 70 197-268 64-138 (146)
216 PF13371 TPR_9: Tetratricopept 96.4 0.023 4.9E-07 41.1 7.7 56 203-260 3-58 (73)
217 PF13281 DUF4071: Domain of un 96.4 0.98 2.1E-05 44.0 20.5 76 412-487 146-227 (374)
218 KOG2280 Vacuolar assembly/sort 96.3 1.7 3.6E-05 45.4 28.7 109 444-571 686-794 (829)
219 PF03704 BTAD: Bacterial trans 96.3 0.41 8.9E-06 40.3 16.0 55 518-573 68-122 (146)
220 PF13424 TPR_12: Tetratricopep 96.3 0.015 3.2E-07 42.8 6.0 61 549-609 7-73 (78)
221 COG3118 Thioredoxin domain-con 96.0 1.1 2.4E-05 41.5 17.5 122 169-294 143-264 (304)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.8 3.9E-05 42.3 33.5 119 512-634 397-519 (660)
223 KOG2114 Vacuolar assembly/sort 96.0 2.8 6.1E-05 44.5 26.0 179 125-327 334-516 (933)
224 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.12 2.6E-06 50.9 12.0 67 157-224 72-141 (453)
225 PF09205 DUF1955: Domain of un 95.9 0.64 1.4E-05 37.0 14.5 66 547-613 86-151 (161)
226 PRK15331 chaperone protein Sic 95.9 0.65 1.4E-05 39.0 14.5 92 271-364 42-133 (165)
227 KOG1941 Acetylcholine receptor 95.9 1 2.2E-05 42.7 16.9 205 125-329 43-274 (518)
228 KOG2610 Uncharacterized conser 95.9 0.72 1.6E-05 43.1 15.8 154 205-362 113-273 (491)
229 KOG2280 Vacuolar assembly/sort 95.8 2.9 6.4E-05 43.7 32.0 108 409-535 686-793 (829)
230 PF07079 DUF1347: Protein of u 95.8 2.1 4.6E-05 42.0 42.5 128 452-587 389-530 (549)
231 COG1729 Uncharacterized protei 95.8 0.13 2.9E-06 46.8 11.0 91 170-260 151-244 (262)
232 PF08631 SPO22: Meiosis protei 95.8 1.8 3.9E-05 41.1 26.3 162 136-301 4-192 (278)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.14 3.1E-06 50.3 11.8 66 122-189 72-141 (453)
234 KOG1538 Uncharacterized conser 95.8 0.93 2E-05 46.3 17.4 101 300-436 746-846 (1081)
235 COG1729 Uncharacterized protei 95.8 0.16 3.6E-06 46.2 11.4 99 127-226 144-246 (262)
236 KOG4555 TPR repeat-containing 95.7 0.3 6.4E-06 38.7 10.9 92 168-261 51-145 (175)
237 KOG1258 mRNA processing protei 95.7 3 6.4E-05 42.6 37.6 133 159-295 44-180 (577)
238 PF13512 TPR_18: Tetratricopep 95.6 0.45 9.8E-06 39.0 12.2 83 160-243 10-94 (142)
239 KOG0543 FKBP-type peptidyl-pro 95.6 0.67 1.4E-05 44.8 15.1 140 342-505 214-354 (397)
240 PF12921 ATP13: Mitochondrial 95.6 0.23 4.9E-06 40.2 10.4 99 124-242 1-99 (126)
241 PF13512 TPR_18: Tetratricopep 95.6 0.36 7.8E-06 39.5 11.5 87 124-210 9-97 (142)
242 PF04053 Coatomer_WDAD: Coatom 95.5 0.35 7.5E-06 48.9 13.9 157 133-326 269-427 (443)
243 PF04840 Vps16_C: Vps16, C-ter 95.5 2.6 5.6E-05 40.7 31.4 76 417-502 187-262 (319)
244 KOG0543 FKBP-type peptidyl-pro 95.4 0.28 6E-06 47.3 11.8 97 195-295 257-355 (397)
245 KOG1585 Protein required for f 95.4 1.9 4.2E-05 38.5 17.0 209 124-360 30-251 (308)
246 PF10300 DUF3808: Protein of u 95.3 1.1 2.4E-05 46.1 17.1 82 492-575 248-333 (468)
247 PF04053 Coatomer_WDAD: Coatom 95.2 0.7 1.5E-05 46.8 14.9 157 417-608 271-428 (443)
248 COG4649 Uncharacterized protei 95.2 1.6 3.6E-05 36.7 14.1 123 171-294 69-195 (221)
249 COG3898 Uncharacterized membra 95.1 3.3 7.1E-05 39.9 32.6 127 197-329 84-216 (531)
250 smart00299 CLH Clathrin heavy 95.1 1.6 3.5E-05 36.3 15.2 20 518-537 75-94 (140)
251 PF13170 DUF4003: Protein of u 94.9 2.8 6.1E-05 39.9 17.3 130 176-307 78-223 (297)
252 KOG2610 Uncharacterized conser 94.8 0.98 2.1E-05 42.3 13.1 154 418-574 114-274 (491)
253 PF10300 DUF3808: Protein of u 94.7 1.7 3.7E-05 44.7 16.6 164 162-329 190-375 (468)
254 KOG1258 mRNA processing protei 94.7 5.8 0.00013 40.6 36.9 134 125-260 45-180 (577)
255 KOG3941 Intermediate in Toll s 94.7 0.3 6.6E-06 44.3 9.5 105 509-632 64-173 (406)
256 COG0457 NrfG FOG: TPR repeat [ 94.6 3.4 7.4E-05 37.6 28.3 223 139-364 37-264 (291)
257 COG3118 Thioredoxin domain-con 94.6 1.9 4.1E-05 40.0 14.4 151 130-285 139-291 (304)
258 KOG1585 Protein required for f 94.5 3.2 7E-05 37.2 15.1 192 162-380 33-237 (308)
259 COG3629 DnrI DNA-binding trans 94.5 0.23 5E-06 46.0 8.8 94 110-204 136-236 (280)
260 KOG3941 Intermediate in Toll s 94.5 0.54 1.2E-05 42.8 10.5 106 439-563 64-174 (406)
261 smart00299 CLH Clathrin heavy 94.4 2.5 5.4E-05 35.2 15.3 14 139-152 21-34 (140)
262 COG0457 NrfG FOG: TPR repeat [ 94.4 3.9 8.5E-05 37.2 27.2 205 124-331 58-266 (291)
263 PF09205 DUF1955: Domain of un 94.3 2.2 4.8E-05 34.2 15.0 65 408-473 87-151 (161)
264 PF08631 SPO22: Meiosis protei 94.3 4.9 0.00011 38.1 26.3 62 268-330 86-150 (278)
265 PRK11906 transcriptional regul 94.3 3.8 8.3E-05 40.8 16.8 119 105-225 274-402 (458)
266 PF13428 TPR_14: Tetratricopep 94.3 0.16 3.5E-06 32.1 5.2 30 197-226 3-32 (44)
267 COG4105 ComL DNA uptake lipopr 94.3 4.2 9E-05 37.1 22.2 184 125-329 34-232 (254)
268 KOG1941 Acetylcholine receptor 94.3 3.2 6.8E-05 39.5 15.2 202 162-363 45-273 (518)
269 PF04184 ST7: ST7 protein; In 94.2 6.7 0.00014 39.4 22.0 163 130-308 173-338 (539)
270 PF13428 TPR_14: Tetratricopep 94.2 0.17 3.6E-06 32.1 5.1 28 162-189 3-30 (44)
271 PRK11906 transcriptional regul 94.2 5.3 0.00012 39.9 17.5 163 196-361 252-432 (458)
272 KOG1920 IkappaB kinase complex 94.1 5.1 0.00011 44.5 18.5 154 174-363 894-1053(1265)
273 PF04184 ST7: ST7 protein; In 94.1 3.1 6.6E-05 41.6 15.5 61 515-575 262-323 (539)
274 KOG4555 TPR repeat-containing 94.0 2.3 4.9E-05 34.0 11.7 91 416-507 52-145 (175)
275 PF13170 DUF4003: Protein of u 93.9 6 0.00013 37.7 17.0 139 142-282 79-233 (297)
276 COG4649 Uncharacterized protei 93.5 4.2 9E-05 34.4 15.2 136 123-260 57-196 (221)
277 PF02284 COX5A: Cytochrome c o 93.3 1.9 4.1E-05 32.7 9.7 62 565-627 28-89 (108)
278 COG1747 Uncharacterized N-term 92.9 11 0.00025 37.8 20.9 182 122-311 63-249 (711)
279 PF10602 RPN7: 26S proteasome 92.9 2.1 4.5E-05 37.3 11.4 96 479-574 38-140 (177)
280 KOG1586 Protein required for f 92.8 6.9 0.00015 35.0 14.6 26 593-618 165-190 (288)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 92.7 0.93 2E-05 33.9 7.4 63 564-627 24-86 (103)
282 COG4785 NlpI Lipoprotein NlpI, 92.7 6.7 0.00015 34.6 16.9 162 157-330 96-266 (297)
283 COG3629 DnrI DNA-binding trans 92.7 1.5 3.3E-05 40.8 10.6 78 196-275 154-236 (280)
284 PF10602 RPN7: 26S proteasome 92.3 2.2 4.8E-05 37.1 10.8 97 513-609 37-140 (177)
285 PF13176 TPR_7: Tetratricopept 91.9 0.41 8.8E-06 28.6 4.1 26 197-222 1-26 (36)
286 PF07035 Mic1: Colon cancer-as 91.8 7.5 0.00016 33.2 14.2 32 186-217 20-51 (167)
287 KOG2396 HAT (Half-A-TPR) repea 91.7 16 0.00035 36.8 37.4 409 107-540 89-558 (568)
288 PF07035 Mic1: Colon cancer-as 91.6 7.9 0.00017 33.0 15.4 102 251-362 14-115 (167)
289 PF13176 TPR_7: Tetratricopept 91.3 0.48 1E-05 28.3 4.0 26 584-609 1-26 (36)
290 KOG2063 Vacuolar assembly/sort 90.8 26 0.00056 38.6 18.7 27 127-153 506-532 (877)
291 PRK09687 putative lyase; Provi 90.4 16 0.00035 34.6 28.8 203 406-629 67-279 (280)
292 PF10345 Cohesin_load: Cohesin 90.3 30 0.00064 37.3 41.0 193 417-610 371-605 (608)
293 KOG1550 Extracellular protein 90.2 28 0.0006 36.9 25.0 147 211-366 228-394 (552)
294 cd00923 Cyt_c_Oxidase_Va Cytoc 90.1 2.1 4.6E-05 32.1 7.0 61 142-203 24-84 (103)
295 PF10345 Cohesin_load: Cohesin 90.0 31 0.00067 37.2 34.8 48 524-571 373-428 (608)
296 PF02284 COX5A: Cytochrome c o 90.0 4 8.6E-05 31.0 8.4 60 143-203 28-87 (108)
297 PF13431 TPR_17: Tetratricopep 89.9 0.4 8.8E-06 28.2 2.7 21 194-214 12-32 (34)
298 PF09613 HrpB1_HrpK: Bacterial 89.9 11 0.00024 31.8 14.0 19 487-505 54-72 (160)
299 KOG0276 Vesicle coat complex C 89.8 9.3 0.0002 39.2 13.4 132 161-326 615-746 (794)
300 COG2976 Uncharacterized protei 89.8 13 0.00028 32.4 13.1 91 167-260 96-188 (207)
301 KOG1920 IkappaB kinase complex 89.5 41 0.0009 37.9 26.8 81 413-504 971-1053(1265)
302 PF04097 Nic96: Nup93/Nic96; 89.2 25 0.00053 37.8 17.3 43 200-244 116-158 (613)
303 KOG4234 TPR repeat-containing 89.2 7.8 0.00017 33.7 10.7 93 132-226 102-199 (271)
304 KOG4570 Uncharacterized conser 88.8 2 4.4E-05 39.9 7.5 106 119-226 58-166 (418)
305 KOG4570 Uncharacterized conser 88.6 8.1 0.00018 36.2 11.2 100 473-576 60-164 (418)
306 PF09613 HrpB1_HrpK: Bacterial 88.5 14 0.0003 31.2 13.7 19 205-223 54-72 (160)
307 PRK09687 putative lyase; Provi 87.8 25 0.00055 33.3 29.7 217 124-364 36-262 (280)
308 PF00515 TPR_1: Tetratricopept 87.7 1.5 3.3E-05 25.5 4.3 30 196-225 2-31 (34)
309 COG2976 Uncharacterized protei 87.7 18 0.00039 31.5 13.6 88 202-295 96-188 (207)
310 PF00637 Clathrin: Region in C 87.3 0.3 6.5E-06 40.9 1.4 129 483-633 13-141 (143)
311 PF13431 TPR_17: Tetratricopep 86.8 1 2.2E-05 26.5 3.0 23 229-251 11-33 (34)
312 PF07719 TPR_2: Tetratricopept 86.6 2 4.4E-05 24.9 4.4 29 197-225 3-31 (34)
313 PF02259 FAT: FAT domain; Int 86.5 35 0.00076 33.6 20.9 66 264-329 144-212 (352)
314 KOG0276 Vesicle coat complex C 86.2 13 0.00027 38.3 11.8 132 127-292 616-747 (794)
315 PF11207 DUF2989: Protein of u 86.0 20 0.00044 31.5 11.6 73 142-215 123-198 (203)
316 KOG0890 Protein kinase of the 85.9 97 0.0021 38.1 36.3 320 130-472 1388-1732(2382)
317 PF07719 TPR_2: Tetratricopept 85.7 1.4 3E-05 25.6 3.4 27 584-610 3-29 (34)
318 PF00515 TPR_1: Tetratricopept 85.3 1.5 3.2E-05 25.6 3.4 27 584-610 3-29 (34)
319 PF13374 TPR_10: Tetratricopep 85.2 2.3 5E-05 26.1 4.5 28 196-223 3-30 (42)
320 PF11207 DUF2989: Protein of u 85.2 14 0.0003 32.5 10.2 81 169-251 116-198 (203)
321 PF07575 Nucleopor_Nup85: Nup8 85.1 57 0.0012 34.8 17.4 44 106-150 114-173 (566)
322 COG3947 Response regulator con 85.0 33 0.00072 32.0 16.4 71 550-621 282-357 (361)
323 PF07575 Nucleopor_Nup85: Nup8 84.4 61 0.0013 34.6 17.4 35 593-627 506-540 (566)
324 COG4785 NlpI Lipoprotein NlpI, 84.3 30 0.00064 30.8 17.6 177 174-364 79-265 (297)
325 PF13374 TPR_10: Tetratricopep 83.8 2.7 5.9E-05 25.7 4.3 28 583-610 3-30 (42)
326 PRK15180 Vi polysaccharide bio 83.8 50 0.0011 33.1 30.9 88 169-259 332-419 (831)
327 KOG4648 Uncharacterized conser 83.8 6.1 0.00013 37.4 8.0 54 168-223 105-159 (536)
328 PF06552 TOM20_plant: Plant sp 83.6 24 0.00053 30.4 10.8 42 211-261 96-137 (186)
329 KOG2396 HAT (Half-A-TPR) repea 83.2 56 0.0012 33.2 38.9 99 509-610 456-558 (568)
330 KOG1550 Extracellular protein 82.9 69 0.0015 34.0 28.2 117 172-296 261-394 (552)
331 KOG4077 Cytochrome c oxidase, 82.7 9.6 0.00021 30.3 7.4 62 565-627 67-128 (149)
332 TIGR02561 HrpB1_HrpK type III 82.6 27 0.00058 29.0 12.1 19 205-223 54-72 (153)
333 COG4455 ImpE Protein of avirul 80.5 13 0.00028 33.0 8.2 54 202-257 8-61 (273)
334 COG4455 ImpE Protein of avirul 80.3 13 0.00028 32.9 8.2 76 128-204 4-81 (273)
335 KOG2471 TPR repeat-containing 80.1 47 0.001 33.5 12.7 37 521-558 344-380 (696)
336 PF13174 TPR_6: Tetratricopept 79.9 3.3 7.2E-05 23.6 3.4 26 200-225 5-30 (33)
337 KOG4234 TPR repeat-containing 79.9 28 0.0006 30.5 9.9 87 453-541 106-197 (271)
338 KOG4648 Uncharacterized conser 79.6 10 0.00023 35.9 7.9 91 132-225 104-195 (536)
339 PF02259 FAT: FAT domain; Int 79.5 67 0.0014 31.6 26.7 65 406-470 145-212 (352)
340 COG2909 MalT ATP-dependent tra 77.9 1.2E+02 0.0025 33.5 30.9 226 242-467 426-684 (894)
341 PF06552 TOM20_plant: Plant sp 77.8 22 0.00048 30.6 8.7 76 211-296 51-137 (186)
342 PF00637 Clathrin: Region in C 77.5 0.77 1.7E-05 38.4 0.1 54 237-290 13-66 (143)
343 TIGR03504 FimV_Cterm FimV C-te 77.0 4.6 9.9E-05 25.4 3.4 23 553-575 5-27 (44)
344 PF07721 TPR_4: Tetratricopept 76.5 3.9 8.5E-05 22.1 2.7 10 171-180 12-21 (26)
345 COG3947 Response regulator con 76.4 68 0.0015 30.1 16.7 59 234-293 282-340 (361)
346 PF13181 TPR_8: Tetratricopept 76.2 8.1 0.00018 22.2 4.4 28 197-224 3-30 (34)
347 TIGR02508 type_III_yscG type I 75.9 33 0.00071 26.2 8.7 9 173-181 52-60 (115)
348 PF11848 DUF3368: Domain of un 75.6 10 0.00023 24.4 4.9 35 592-626 12-46 (48)
349 KOG0687 26S proteasome regulat 75.4 77 0.0017 30.2 15.6 98 336-435 104-209 (393)
350 KOG1464 COP9 signalosome, subu 75.1 69 0.0015 29.5 18.3 49 174-222 41-92 (440)
351 PF13181 TPR_8: Tetratricopept 74.7 8.6 0.00019 22.1 4.2 27 584-610 3-29 (34)
352 PRK10941 hypothetical protein; 74.4 45 0.00097 31.3 10.7 61 165-226 186-246 (269)
353 KOG2066 Vacuolar assembly/sort 73.0 1.4E+02 0.0031 32.2 31.2 102 167-278 363-467 (846)
354 TIGR02508 type_III_yscG type I 72.7 40 0.00087 25.7 9.0 85 528-620 21-105 (115)
355 KOG2066 Vacuolar assembly/sort 72.1 1.5E+02 0.0033 32.1 31.3 100 134-243 365-467 (846)
356 PF11663 Toxin_YhaV: Toxin wit 72.0 4.4 9.5E-05 32.6 3.0 34 592-627 105-138 (140)
357 PF13174 TPR_6: Tetratricopept 72.0 5.3 0.00011 22.8 2.8 24 166-189 6-29 (33)
358 COG2909 MalT ATP-dependent tra 71.9 1.6E+02 0.0035 32.4 27.6 227 276-502 425-684 (894)
359 KOG2471 TPR repeat-containing 71.9 98 0.0021 31.4 12.5 106 487-594 250-381 (696)
360 TIGR03504 FimV_Cterm FimV C-te 71.8 9.7 0.00021 24.0 4.0 24 518-541 5-28 (44)
361 KOG4507 Uncharacterized conser 71.5 26 0.00056 36.0 8.8 104 171-277 618-721 (886)
362 PF07163 Pex26: Pex26 protein; 69.9 97 0.0021 29.0 13.1 91 163-254 86-181 (309)
363 KOG4077 Cytochrome c oxidase, 69.3 32 0.00068 27.5 7.0 47 143-189 67-113 (149)
364 COG5187 RPN7 26S proteasome re 69.1 1E+02 0.0022 28.9 13.5 70 229-298 113-187 (412)
365 KOG2297 Predicted translation 69.0 1.1E+02 0.0023 29.0 16.4 19 548-566 322-340 (412)
366 PF07163 Pex26: Pex26 protein; 68.4 63 0.0014 30.1 9.8 88 413-500 89-181 (309)
367 PF13929 mRNA_stabil: mRNA sta 68.4 1.1E+02 0.0023 28.9 17.1 86 543-628 198-289 (292)
368 KOG1586 Protein required for f 67.9 96 0.0021 28.2 17.8 22 274-295 162-183 (288)
369 TIGR02561 HrpB1_HrpK type III 67.6 72 0.0016 26.6 12.7 51 313-365 22-73 (153)
370 PF13762 MNE1: Mitochondrial s 67.4 72 0.0016 26.5 10.8 83 338-420 41-128 (145)
371 PRK11619 lytic murein transgly 67.4 1.9E+02 0.0041 31.4 41.9 80 161-247 100-179 (644)
372 KOG1464 COP9 signalosome, subu 67.0 1.1E+02 0.0023 28.4 23.2 47 316-362 42-91 (440)
373 PF10579 Rapsyn_N: Rapsyn N-te 66.8 18 0.00039 26.2 4.9 16 552-567 48-63 (80)
374 PF04097 Nic96: Nup93/Nic96; 66.0 2E+02 0.0043 31.1 22.6 62 126-189 113-181 (613)
375 smart00028 TPR Tetratricopepti 64.4 12 0.00026 20.4 3.3 28 197-224 3-30 (34)
376 KOG4507 Uncharacterized conser 63.8 59 0.0013 33.6 9.5 101 125-226 212-314 (886)
377 COG1747 Uncharacterized N-term 63.5 1.8E+02 0.004 29.8 25.7 181 264-453 64-250 (711)
378 PF11846 DUF3366: Domain of un 63.4 32 0.00069 30.5 7.2 33 578-610 140-172 (193)
379 COG0790 FOG: TPR repeat, SEL1 63.3 1.4E+02 0.003 28.4 23.7 158 457-624 92-279 (292)
380 KOG0687 26S proteasome regulat 62.8 1.5E+02 0.0032 28.5 15.0 97 231-329 104-209 (393)
381 PHA02875 ankyrin repeat protei 62.5 52 0.0011 33.4 9.6 17 202-218 72-88 (413)
382 PHA02875 ankyrin repeat protei 61.6 1.9E+02 0.0041 29.3 14.2 76 241-324 9-88 (413)
383 PF10579 Rapsyn_N: Rapsyn N-te 61.5 22 0.00047 25.8 4.5 48 558-605 17-66 (80)
384 PF14689 SPOB_a: Sensor_kinase 61.2 21 0.00045 24.6 4.4 30 194-223 22-51 (62)
385 PF04190 DUF410: Protein of un 60.2 1.5E+02 0.0033 27.8 16.2 144 130-295 15-170 (260)
386 KOG0128 RNA-binding protein SA 59.9 2.7E+02 0.0058 30.6 34.1 202 123-330 111-341 (881)
387 PF08424 NRDE-2: NRDE-2, neces 59.8 1.8E+02 0.0038 28.4 19.1 118 459-578 48-185 (321)
388 PF13929 mRNA_stabil: mRNA sta 59.2 1.6E+02 0.0035 27.8 19.1 85 508-592 198-288 (292)
389 PF14561 TPR_20: Tetratricopep 58.4 77 0.0017 23.8 9.2 53 194-246 21-73 (90)
390 PF11846 DUF3366: Domain of un 58.1 27 0.00058 30.9 5.8 33 157-189 141-173 (193)
391 PF14689 SPOB_a: Sensor_kinase 57.3 27 0.00059 24.0 4.4 46 211-259 6-51 (62)
392 PF08424 NRDE-2: NRDE-2, neces 55.8 2E+02 0.0044 27.9 17.6 29 339-367 157-185 (321)
393 KOG2908 26S proteasome regulat 55.8 1.1E+02 0.0024 29.5 9.2 64 519-582 82-155 (380)
394 PF12862 Apc5: Anaphase-promot 55.5 64 0.0014 24.4 6.7 24 201-224 47-70 (94)
395 PF09477 Type_III_YscG: Bacter 55.3 98 0.0021 24.1 8.6 81 102-190 19-99 (116)
396 PF10366 Vps39_1: Vacuolar sor 54.6 1E+02 0.0022 24.1 9.0 27 409-435 41-67 (108)
397 cd00280 TRFH Telomeric Repeat 53.7 88 0.0019 27.1 7.5 48 176-223 85-139 (200)
398 PF14853 Fis1_TPR_C: Fis1 C-te 53.3 64 0.0014 21.4 6.1 35 342-378 7-41 (53)
399 KOG2063 Vacuolar assembly/sort 53.1 3.8E+02 0.0081 30.2 17.5 38 275-312 600-637 (877)
400 PF04190 DUF410: Protein of un 53.0 2E+02 0.0043 27.0 18.6 83 334-436 88-170 (260)
401 KOG4642 Chaperone-dependent E3 52.7 1.9E+02 0.004 26.5 11.6 53 519-573 51-104 (284)
402 PF09670 Cas_Cas02710: CRISPR- 52.5 2.5E+02 0.0053 28.2 12.0 21 134-154 140-160 (379)
403 KOG0890 Protein kinase of the 51.7 6E+02 0.013 32.1 29.6 150 165-325 1388-1542(2382)
404 PF11848 DUF3368: Domain of un 51.4 56 0.0012 21.0 4.9 30 243-272 14-43 (48)
405 cd08819 CARD_MDA5_2 Caspase ac 51.0 1E+02 0.0022 23.0 7.5 33 314-351 49-81 (88)
406 PF13762 MNE1: Mitochondrial s 50.8 1.5E+02 0.0032 24.8 11.0 49 582-630 79-128 (145)
407 PF12862 Apc5: Anaphase-promot 50.3 92 0.002 23.5 6.9 23 588-610 47-69 (94)
408 PF00244 14-3-3: 14-3-3 protei 49.9 1.4E+02 0.0031 27.4 9.2 60 129-188 5-65 (236)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 49.8 1.4E+02 0.003 24.2 8.8 22 233-254 101-122 (126)
410 PF09477 Type_III_YscG: Bacter 49.4 1.2E+02 0.0027 23.6 8.5 29 579-609 68-96 (116)
411 PF09670 Cas_Cas02710: CRISPR- 48.4 2.3E+02 0.005 28.4 11.1 52 243-295 143-198 (379)
412 PF14853 Fis1_TPR_C: Fis1 C-te 47.7 67 0.0014 21.3 4.8 25 201-225 7-31 (53)
413 PF09986 DUF2225: Uncharacteri 46.9 2.2E+02 0.0048 25.7 9.8 25 587-611 170-194 (214)
414 PF14669 Asp_Glu_race_2: Putat 46.8 2E+02 0.0044 25.2 14.5 26 477-502 181-206 (233)
415 PRK10564 maltose regulon perip 46.2 53 0.0011 31.0 5.7 28 235-262 261-288 (303)
416 COG0790 FOG: TPR repeat, SEL1 46.1 2.7E+02 0.0058 26.5 24.4 46 284-332 173-222 (292)
417 PF11817 Foie-gras_1: Foie gra 45.9 1.2E+02 0.0025 28.2 8.1 59 235-293 182-245 (247)
418 KOG0376 Serine-threonine phosp 45.6 44 0.00095 33.6 5.4 101 168-274 12-113 (476)
419 KOG0551 Hsp90 co-chaperone CNS 45.6 2.9E+02 0.0063 26.7 10.6 88 168-257 89-179 (390)
420 COG2178 Predicted RNA-binding 45.3 2.1E+02 0.0046 25.2 8.6 18 593-610 132-149 (204)
421 KOG0376 Serine-threonine phosp 45.0 57 0.0012 32.9 6.0 105 415-523 12-116 (476)
422 KOG3364 Membrane protein invol 44.5 1.8E+02 0.0039 23.9 8.2 67 159-225 31-101 (149)
423 PF13006 Nterm_IS4: Insertion 44.3 1.4E+02 0.0031 22.9 6.7 84 82-174 5-88 (98)
424 KOG1114 Tripeptidyl peptidase 43.7 5.2E+02 0.011 29.1 13.5 70 317-386 1212-1282(1304)
425 PF12793 SgrR_N: Sugar transpo 43.6 1.6E+02 0.0036 23.4 7.4 72 217-290 5-94 (115)
426 PRK13342 recombination factor 43.6 3.7E+02 0.008 27.3 20.0 29 245-273 244-272 (413)
427 PF11663 Toxin_YhaV: Toxin wit 43.4 26 0.00057 28.4 2.9 21 561-581 109-129 (140)
428 KOG3364 Membrane protein invol 43.1 1.9E+02 0.0041 23.8 9.2 24 272-295 77-100 (149)
429 COG5187 RPN7 26S proteasome re 42.8 3E+02 0.0064 26.0 14.2 98 336-435 115-220 (412)
430 KOG2168 Cullins [Cell cycle co 42.8 5.1E+02 0.011 28.7 26.2 36 588-625 794-829 (835)
431 COG5108 RPO41 Mitochondrial DN 42.3 1.5E+02 0.0032 31.4 8.5 75 517-594 33-115 (1117)
432 KOG4642 Chaperone-dependent E3 42.1 2.8E+02 0.006 25.5 11.2 115 172-291 22-142 (284)
433 KOG1308 Hsp70-interacting prot 42.0 44 0.00095 32.1 4.5 88 208-299 127-215 (377)
434 PRK10564 maltose regulon perip 42.0 50 0.0011 31.2 4.9 42 579-620 253-295 (303)
435 PRK10941 hypothetical protein; 41.3 3.1E+02 0.0068 25.8 11.0 60 411-471 185-244 (269)
436 PRK11619 lytic murein transgly 40.6 5.2E+02 0.011 28.2 39.5 356 117-501 91-463 (644)
437 KOG2659 LisH motif-containing 40.4 2.8E+02 0.0062 25.1 9.6 17 170-186 74-90 (228)
438 PF03745 DUF309: Domain of unk 40.3 1.2E+02 0.0026 20.8 5.9 48 205-253 9-61 (62)
439 PF08311 Mad3_BUB1_I: Mad3/BUB 40.0 2E+02 0.0044 23.3 8.5 43 530-572 81-124 (126)
440 COG4941 Predicted RNA polymera 39.2 3.7E+02 0.008 26.1 11.1 115 141-259 272-393 (415)
441 PRK09857 putative transposase; 38.9 1.9E+02 0.0042 27.6 8.5 64 552-616 211-274 (292)
442 PF02607 B12-binding_2: B12 bi 37.8 46 0.001 24.1 3.4 38 559-596 13-50 (79)
443 COG0735 Fur Fe2+/Zn2+ uptake r 36.7 1.7E+02 0.0036 24.5 6.9 59 291-350 11-69 (145)
444 KOG3807 Predicted membrane pro 36.1 1.8E+02 0.0038 27.9 7.4 111 140-263 231-343 (556)
445 KOG1308 Hsp70-interacting prot 35.7 27 0.00059 33.4 2.2 93 171-266 125-217 (377)
446 smart00386 HAT HAT (Half-A-TPR 35.6 80 0.0017 17.3 3.9 13 211-223 3-15 (33)
447 COG2178 Predicted RNA-binding 35.4 3.1E+02 0.0068 24.2 10.2 60 165-224 34-98 (204)
448 COG5108 RPO41 Mitochondrial DN 34.9 2.5E+02 0.0055 29.9 8.8 75 130-207 33-115 (1117)
449 PF10475 DUF2450: Protein of u 34.3 4.2E+02 0.0091 25.3 10.6 53 165-223 103-155 (291)
450 KOG4567 GTPase-activating prot 33.8 2.4E+02 0.0051 26.9 7.7 56 498-558 264-319 (370)
451 PRK09857 putative transposase; 33.6 4.4E+02 0.0094 25.3 10.7 64 234-298 209-272 (292)
452 PF11817 Foie-gras_1: Foie gra 33.3 2.1E+02 0.0046 26.5 7.8 61 268-328 180-245 (247)
453 COG0735 Fur Fe2+/Zn2+ uptake r 33.1 95 0.0021 25.9 4.9 45 130-174 25-69 (145)
454 KOG4567 GTPase-activating prot 33.1 4.5E+02 0.0097 25.2 10.0 43 252-294 264-306 (370)
455 KOG3636 Uncharacterized conser 33.0 5.3E+02 0.011 26.0 14.7 91 433-523 174-271 (669)
456 PF00244 14-3-3: 14-3-3 protei 32.8 4E+02 0.0086 24.5 10.1 57 412-468 6-63 (236)
457 PF09454 Vps23_core: Vps23 cor 32.2 88 0.0019 21.8 3.7 48 511-559 7-54 (65)
458 PF15297 CKAP2_C: Cytoskeleton 31.7 1.6E+02 0.0035 28.5 6.6 45 125-169 140-184 (353)
459 PF10255 Paf67: RNA polymerase 31.7 5.1E+02 0.011 26.1 10.3 60 269-328 125-191 (404)
460 cd08819 CARD_MDA5_2 Caspase ac 31.6 2.2E+02 0.0048 21.3 7.1 14 280-293 50-63 (88)
461 PF10255 Paf67: RNA polymerase 31.5 2.4E+02 0.0052 28.4 8.0 60 234-293 125-191 (404)
462 PF09454 Vps23_core: Vps23 cor 31.4 1E+02 0.0022 21.5 3.9 49 405-454 6-54 (65)
463 cd00280 TRFH Telomeric Repeat 30.0 3.8E+02 0.0082 23.5 13.3 68 317-387 85-159 (200)
464 KOG2297 Predicted translation 30.0 5E+02 0.011 24.8 21.0 69 388-462 272-341 (412)
465 KOG0128 RNA-binding protein SA 29.4 8.2E+02 0.018 27.2 36.1 67 158-225 111-180 (881)
466 PHA03100 ankyrin repeat protei 29.1 5.7E+02 0.012 26.5 11.1 9 272-280 144-152 (480)
467 PRK08691 DNA polymerase III su 29.0 8E+02 0.017 27.0 11.7 46 494-541 181-227 (709)
468 PF02847 MA3: MA3 domain; Int 28.7 1.9E+02 0.004 22.6 5.8 22 482-503 7-28 (113)
469 PF14669 Asp_Glu_race_2: Putat 28.4 4.2E+02 0.009 23.4 15.0 25 271-295 137-161 (233)
470 PF10366 Vps39_1: Vacuolar sor 28.3 2.9E+02 0.0064 21.6 7.7 25 234-258 42-66 (108)
471 PRK07003 DNA polymerase III su 28.0 8.2E+02 0.018 27.3 11.6 92 529-623 181-286 (830)
472 PF02847 MA3: MA3 domain; Int 27.8 2.8E+02 0.006 21.6 6.7 21 272-292 8-28 (113)
473 PRK14958 DNA polymerase III su 27.7 7.4E+02 0.016 26.1 12.3 84 494-580 181-278 (509)
474 PRK14956 DNA polymerase III su 27.1 7.3E+02 0.016 25.8 12.0 32 190-223 197-228 (484)
475 cd07153 Fur_like Ferric uptake 26.7 1.5E+02 0.0033 23.3 5.0 42 133-174 8-49 (116)
476 PF02184 HAT: HAT (Half-A-TPR) 26.7 1.4E+02 0.003 17.4 3.5 22 141-164 3-24 (32)
477 PRK11639 zinc uptake transcrip 26.7 2.8E+02 0.006 23.9 6.8 43 167-209 32-74 (169)
478 PF04910 Tcf25: Transcriptiona 26.7 6.4E+02 0.014 25.0 22.5 57 202-259 110-167 (360)
479 PRK09462 fur ferric uptake reg 26.7 3.2E+02 0.007 22.8 7.1 60 397-457 7-67 (148)
480 PF15297 CKAP2_C: Cytoskeleton 26.4 6.2E+02 0.013 24.8 9.6 43 585-627 143-185 (353)
481 PF09868 DUF2095: Uncharacteri 26.2 2.6E+02 0.0056 22.0 5.5 35 413-448 67-101 (128)
482 COG5159 RPN6 26S proteasome re 25.8 5.7E+02 0.012 24.2 18.4 279 166-487 9-308 (421)
483 PRK11639 zinc uptake transcrip 25.8 3.2E+02 0.0068 23.6 7.0 43 308-350 32-74 (169)
484 PF12926 MOZART2: Mitotic-spin 25.7 2.9E+02 0.0062 20.6 8.5 43 252-294 29-71 (88)
485 KOG4521 Nuclear pore complex, 25.6 1.1E+03 0.024 27.5 16.9 119 198-322 986-1123(1480)
486 PF09868 DUF2095: Uncharacteri 25.1 2.5E+02 0.0053 22.1 5.2 35 588-623 67-101 (128)
487 COG2256 MGS1 ATPase related to 24.6 7.3E+02 0.016 25.0 16.2 31 245-275 263-293 (436)
488 KOG0545 Aryl-hydrocarbon recep 24.6 5.7E+02 0.012 23.7 12.0 126 114-259 167-292 (329)
489 PF06855 DUF1250: Protein of u 24.6 1E+02 0.0022 19.7 2.8 41 112-152 2-42 (46)
490 PRK13342 recombination factor 24.4 7.6E+02 0.016 25.1 19.4 30 420-449 243-272 (413)
491 PF01475 FUR: Ferric uptake re 24.1 1.3E+02 0.0029 23.9 4.2 45 130-174 12-56 (120)
492 PF04910 Tcf25: Transcriptiona 24.0 7.2E+02 0.016 24.7 20.8 100 124-223 39-167 (360)
493 PF11768 DUF3312: Protein of u 24.0 8.1E+02 0.018 25.8 10.2 123 237-366 414-537 (545)
494 KOG0403 Neoplastic transformat 23.4 8E+02 0.017 25.0 23.5 352 199-575 218-610 (645)
495 KOG4279 Serine/threonine prote 23.4 1E+03 0.022 26.2 12.1 181 124-333 200-398 (1226)
496 KOG1839 Uncharacterized protei 23.4 1E+03 0.022 28.1 11.6 154 205-359 942-1122(1236)
497 PRK09462 fur ferric uptake reg 23.2 4.4E+02 0.0096 21.9 7.5 35 316-350 32-66 (148)
498 KOG2659 LisH motif-containing 23.1 5.8E+02 0.013 23.3 10.9 98 369-469 24-130 (228)
499 PF14561 TPR_20: Tetratricopep 23.1 3.3E+02 0.0072 20.4 9.5 33 439-471 19-51 (90)
500 PF03745 DUF309: Domain of unk 23.0 2.6E+02 0.0057 19.2 5.7 46 489-534 11-61 (62)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-70 Score=591.27 Aligned_cols=502 Identities=21% Similarity=0.315 Sum_probs=447.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
++...|..++..|.+.|++++|+++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|..|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4667888888888899999999999999988875 46777788888899999999999999988875 789999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
+.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999888765 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578899999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+.|.+.|+.|+..+|+.+|.+|++.|+.+++ ..+|+.|...|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deA-l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA-LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999988777 888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALM 519 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 519 (638)
|+..+|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHHhhhC
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----S-------------------GGPKRAMEIFTKMQHS 576 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 576 (638)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999998865432 1 1236788999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
|+.||..||+.++.++++.+..+.+..++++|...+..|+..+|++++++|++.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 999999999999988888888999999998888888888899999999988653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-70 Score=588.06 Aligned_cols=509 Identities=17% Similarity=0.249 Sum_probs=484.3
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.+++..|+++|+++.+..-.+++..+++.++..|.+.|.+++|+.+++.|.. |+..+|+.++.+|++.|++++|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3778999999998876655678889999999999999999999999998853 999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998865 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG--KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999986 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+++ ..+++.|.+.|+.||..+|+.+|.+|++
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA-~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA-FEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 500 FNEMKKLRCKPDVYTYNALMSGMVR----A-------------------GMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 556 (638)
|++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+.|+.||..||+.++.+
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999876432 1 1246799999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 557 LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
+++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|...|+.|+..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999998888899999999999998543 368999999999999999985
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-69 Score=592.54 Aligned_cols=494 Identities=20% Similarity=0.285 Sum_probs=371.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 120 NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
|+.||..+|+.+++++++.+++..+.+++..|.+.|..|++.+++.++.+|++.|++++|..+|++|.+ ||..+||
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n 257 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWN 257 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhH
Confidence 344444444444444444444444444444444444444555555666666666666666666666653 3666666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+|.+|++.|++++|+++|++|...|.. ||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 6666666666666666666666666554 666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++
T Consensus 337 g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 337 GSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412 (857)
T ss_pred CCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHH
Confidence 666666666666643 4666677777777777777777777777766666777777777777777777777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+.+.+.|+.|+..+|+.++..|++.|+.+++ ..+|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.
T Consensus 413 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A-~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKA-LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHcCCHHHH-HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 7776667777777777777777777766665 666666653 4566777777777777777777777777765 468
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALM 519 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 519 (638)
||..+|+.++.+|++.|+++.+.+++..+.+.|..++..+++.++++|+++|++++|..+|+++ .||..+||++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 8888888888888888888888888888888888888888899999999999999999999887 48999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHccCCH
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ-HSEIKPDAVSYNTILGCLSRAGMF 598 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~ 598 (638)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 599 EEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
++|.+++++| ++.||..+|++|+.+|...|+.+.+
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 9999999999 5899999999999999988887643
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.7e-69 Score=590.44 Aligned_cols=510 Identities=18% Similarity=0.231 Sum_probs=456.6
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++...|.++|+... ++|..+||.++.+|++.|++++|+++|++|...|+.||..+|+.+++++++.++++.+.+
T Consensus 134 ~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 134 FGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred CCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 455677777777442 357788888888888888888999999888888888888889888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
++..+.+.|+.||..+||.++.+|++.|++++|..+|++|.. ||..+|+.+|.+|++.|+.++|+++|++|.+.|
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 888888888888888999999999999999999999988854 788889999999999999999999999999889
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 9999999999999999999999999999999998998999999999999999999999999998885 468888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.+ .++++.|.+.|+.|+..+|+.++++|++.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a-~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH-HHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 9999999999999999999998888899999999999988888888777 888888998899999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.. +..||..+|+.++.+|++.|+++.+.+++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988864 5677899999999999999999999999876 488999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 006614 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.|+.+|..++|+|+.+|++.|++++|.++|+++ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999887 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH-hCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 582 AVSYNTILGCLSRAGMFEEAARLMKDMN-AKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999 689999999999999999999998876
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-63 Score=536.08 Aligned_cols=474 Identities=19% Similarity=0.278 Sum_probs=446.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
..+..+|+.++..|.+.|++++|.++|+.|...+ ..|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999998764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999964 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
..+.+.+++..+.+.|+.||..+|+.++++|++.|++++|.++|++|. .+|+.+||.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 4589999999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (638)
+|.+.|+.||..||+.++.++++.+..+++ .+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|. .+
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHA-KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHH-HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 999999999999999999999999998887 8899999999999999999999999999999999999999986 46
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 006614 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK-LRCKPDVYTYNALM 519 (638)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~ 519 (638)
|..+|+.+|.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999976 59999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCH
Q 006614 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMF 598 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (638)
.+|++.|++++|.+++++| +..|+..+|+.++.+|+..|+++.|..+++++.+ +.|+ ..+|..+++.|++.|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCH
Confidence 9999999999999998875 5789999999999999999999999999999974 4564 67999999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 006614 599 EEAARLMKDMNAKGFE 614 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~ 614 (638)
++|.+++++|.+.|+.
T Consensus 545 ~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 545 AEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.9e-63 Score=529.56 Aligned_cols=500 Identities=18% Similarity=0.259 Sum_probs=460.7
Q ss_pred ccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...++++.|+++|.|+....++.|+..+|+.++.++.+.++++.+.+++..|.+.|..|+..+++.++.+|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34577899999999998777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|.. ||..+|+.++.++++.|..+.+.+++..+.+
T Consensus 178 ~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 178 RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999975 69999999999999999999999999999998876 9999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|+.||..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999965 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+.+++ ..+|+.|. .||..+|+.+|.+|++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A-~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA-RNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH-HHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888 89999986 4789999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE-YCGCSSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .+..|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006614 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+.|
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99876 46899999999999999999999999999999764 45 47799999999999999999999999999998
Q ss_pred CCCCH-HHHHHHH---HHHH--------ccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 578 IKPDA-VSYNTIL---GCLS--------RAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 578 ~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
++..+ .+|..+- +.+. ...-++...++..+|.+.|+.||..
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 76432 2332110 0010 0112456677888999999999853
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.4e-31 Score=299.21 Aligned_cols=517 Identities=13% Similarity=0.049 Sum_probs=420.5
Q ss_pred ccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...++.+.|..+|..+.... +.+...|..+..++...|++++|.+.+..+.+.. +........++..+.+.|++++|
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 34566777788777765543 4456677777777888888888888887777643 23344556677778888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
..+++++.... +.+..++..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+
T Consensus 451 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 451 LAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888887653 44777888888889999999999999999888665 5667778888888889999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.+ +.+..++..+...+.+.|+.++|...++++...++. +...+..++..+.+.|++++|..+++.+.+.. +.+..+|
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 64 346778888889999999999999999988876543 66778888889999999999999999988764 3477888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
..+..+|.+.|++++|...++.+.+... .+...+..+...+...++..++ ..+++.+.... +.+..++..++..+..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKA-ITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999877542 3556677777788888888777 67777777653 4467888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|..+.... |+..++..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998876 6778888889999999999999999999998864 3446777888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 006614 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...++.+...+...|+ .+|+.+++++.... .
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~ 834 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P 834 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C
Confidence 99988764 5577888889999999999999999999999875 4578889999999999999 88999999988642 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
-+..++..+..++.+.|++++|.++++++.+.+ +.+..++..+..++.+.|+.++|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 256677888999999999999999999999875 34888999999999999998765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-30 Score=295.16 Aligned_cols=512 Identities=13% Similarity=0.076 Sum_probs=312.3
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++.+.|...|..+.... +.+...+..+...+.+.|++++|+..++.+.... +.++..+..+...+.+.|++++|..
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445566666666554433 3455666667777777777777777777766543 4456667777777777777777777
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.|+++.+..+ .+...+..+...+...|++++|.+.|+.+.+..+ ........++..+.+.|++++|.++++.+.+.
T Consensus 385 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 7777766532 2555666666667777777777777777666543 23344455566666667777777777666654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
.+.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|...|+++.+.++. +..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 2345666677777777777777777777776655432 4555666666666777777777777776665433 5566666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
+...+.+.|+.++|..+++++...+. .+...+..+...+...|+..++ ..+++.+.... +.+...|..+..++...|
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKA-LAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 66666666777777776666655432 2344455555666666665555 55555555432 345566666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+. .+.+...+..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666554 445556666666666666666666666666654 33445566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC
Q 006614 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.+ +++...+..+...+...|++++|.+.|+++.+.+ |+..++..++..+.+.|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 665543 3344555555666666666666666666666543 333455555566666666666666666655432 234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC
Q 006614 582 AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
...+..+...|.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555556666666666666666666665542 3444555555555555444
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=9.3e-23 Score=230.56 Aligned_cols=549 Identities=10% Similarity=0.042 Sum_probs=377.3
Q ss_pred CCCCCcHHHHHHhhc-ccC-ChHHHHHHh---ccccchHHHHHHHHHhhhCCCCCCCHHHH----------------HHH
Q 006614 73 FKWGPDAEKALEVLK-MRV-DHRLVHQVL---NIDVEINVKIQFFKWAGRRRNFEHNSTTY----------------MAL 131 (638)
Q Consensus 73 ~~~~~~~~~~l~~~~-~~~-~~~~~~~vl---~~~~~~~~a~~~f~~~~~~~~~~~~~~~~----------------~~l 131 (638)
.+....+.+.|..+. +.+ +|....... -..++.+.|.+.++.+.+.. |.+...+ ...
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 333344556666443 222 233333322 24678899999888766544 3343332 344
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSV-LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
++.+.+.|++++|.+.|+.+++.+ +++... ...........|+.++|+..|+++.+..+. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 567889999999999999998753 444322 112222233569999999999999987533 77888899999999999
Q ss_pred HhHHHHHHHHHHhCCCCC-----------------CC-HHHHH----------------------------------HHH
Q 006614 211 YEKIHELYNEMCNEGNCF-----------------PD-TVTYS----------------------------------ALI 238 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~-----------------~~-~~~~~----------------------------------~l~ 238 (638)
+++|++.++++....... ++ ...+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999997643210 01 00111 112
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH------------H
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTY------------T 305 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~------------~ 305 (638)
..+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+...... ...| .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34556799999999999998863 33788899999999999999999999999987654321 1112 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhc
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 384 (638)
.....+.+.|++++|...|+++++..+. +...+..+...+...|++++|.+.|+++.+.. |+ ...+..+...+ ..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQ 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-Hh
Confidence 2245677899999999999999987543 66778888999999999999999999998754 44 34444444444 34
Q ss_pred CChHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 006614 385 KAPASEASAWFEKMKANGVL--------PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
++..++ ..+++.+...... .....+..+...+...|++++|++.+++..+.. |.++..+..+...|.+.|
T Consensus 432 ~~~~~A-~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKA-LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHH-HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 454444 5555543321100 011234556677888899999999999988875 667778888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------------------------------
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL------------------------------ 506 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 506 (638)
++++|...++++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999887642 223333333333333444444444443332110
Q ss_pred ---------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006614 507 ---------RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 507 ---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
..+.+...+..+...+.+.|++++|+..|++.++.. +.+...+..++..+...|++++|.+.++...+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 123445566778888999999999999999999864 336888889999999999999999999988754
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CC---CHHhHHHHHHHHhccCCccCC
Q 006614 578 IKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF--EY---DQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 578 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a 636 (638)
.| +..++..+..++...|++++|.++++++....- .| +...+..+.+.+.+.|+.++|
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 33 456677788889999999999999999986421 22 224566666777777776554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.7e-22 Score=226.83 Aligned_cols=549 Identities=13% Similarity=0.082 Sum_probs=363.5
Q ss_pred ccccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhhcc-cCChHH------------------H--HHHhccccchH
Q 006614 48 VSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKM-RVDHRL------------------V--HQVLNIDVEIN 106 (638)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~------------------~--~~vl~~~~~~~ 106 (638)
.+.+++..+|....+.....++....+....+.+.++.+.. .++... + ..++...++.+
T Consensus 50 ~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~ 129 (1157)
T PRK11447 50 SLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTE 129 (1157)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHH
Confidence 35666666666555555555555444544444444443321 111111 1 11344567889
Q ss_pred HHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 107 VKIQFFKWAGRRRNFEHNST-TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
.|++.|+.+.... +++.. ....+.......|++++|++.++++.+.. +.++..+..+...+...|+.++|+..+++
T Consensus 130 eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~ 206 (1157)
T PRK11447 130 EALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQ 206 (1157)
T ss_pred HHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999998776443 33332 11112222335689999999999998863 55777888899999999999999999988
Q ss_pred hhhCCC------------------C--------------CCHHH---------------------HHHHHHHHHhcCCHh
Q 006614 186 IKSRKC------------------K--------------PTANT---------------------YNSMILMLMQEGYYE 212 (638)
Q Consensus 186 ~~~~~~------------------~--------------~~~~~---------------------~~~l~~~~~~~g~~~ 212 (638)
+..... . |+... .......+...|+++
T Consensus 207 ~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~ 286 (1157)
T PRK11447 207 MAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGG 286 (1157)
T ss_pred HhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHH
Confidence 754311 0 00000 011244567789999
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhc
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIY------------TTLVSIYFKL 279 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------~~li~~~~~~ 279 (638)
+|+..|++.++..+ .+...+..+...+.+.|++++|+..|++..+..... +...| ......+.+.
T Consensus 287 ~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 99999999998775 578889999999999999999999999998753211 11112 1234567789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
|++++|++.|+++.+..+. +...+..+...+...|++++|.+.|+++.+..+. +...+..+...|. .++.++|..++
T Consensus 365 g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 365 NNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 9999999999999987654 6777888899999999999999999999986443 4555555555553 34456666555
Q ss_pred HHHHHCCCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 360 NKMEALQCK--------PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 360 ~~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
+.+...... .....+..+...+...++..++ ...+++..+.. +-+...+..+...|.+.|++++|...++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA-~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA-AELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543221100 0011222333344445555554 44445444432 2234445555556666666666666666
Q ss_pred HHHhCCCCCCHHHHHHH--------------------------------------------HHHHHccCCHHHHHHHHHH
Q 006614 432 EMEEKGFPPCPAAYCSL--------------------------------------------INGYGKAKRYEAANELFLE 467 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~l--------------------------------------------i~~~~~~g~~~~A~~~~~~ 467 (638)
++.+.. +.++..+..+ ...+...|+.++|..+++
T Consensus 520 ~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~- 597 (1157)
T PRK11447 520 RLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR- 597 (1157)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-
Confidence 655432 3333333322 334455555566655554
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006614 468 LKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 547 (638)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++...+.. +.+.
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~ 671 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSL 671 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCCh
Confidence 134566677888999999999999999999998864 4467889999999999999999999999888752 2346
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCC
Q 006614 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KP---DAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFE 614 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 614 (638)
..+..+...+...|++++|.++++++..... .| +...+..+...+...|++++|.+.|++... .|+.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 6777788899999999999999999986421 22 234666678889999999999999999864 3443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=9.5e-22 Score=188.04 Aligned_cols=429 Identities=16% Similarity=0.127 Sum_probs=221.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
-..+..-+.+.|++.+|.+.-...-..+ +.+....-.+-..+.+..+.++....-....+. .+.-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4455556666677777766554443322 222223333334444555555444333332222 12355667777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY-TTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~ 286 (638)
.|++++|+.+|+.+.+..+ .....|..+..++...|+.+.|.+.|.+..+. .|+.... +.+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7777777777777776654 45666777777777777777777777776664 3544433 23444444567777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
..+.+.++..+. -...|+.|...+-.+|++..|++.|++..+..+. -...|-.|.+.|...+.++.|...|.+.....
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 777666665332 3456666666677777777777777777664322 23456666666666666666666666554321
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 367 CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYC 446 (638)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (638)
|+. ...+..+...|...|.++.|+..|++.++.. |.-+.+|+
T Consensus 283 --pn~-----------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 283 --PNH-----------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred --Ccc-----------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 221 1122223333444444444544444444432 33344444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc
Q 006614 447 SLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRA 525 (638)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 525 (638)
.+..++-..|++.+|.+.+.+.... .+......+.|...|...|.+++|..+|....+. .|. ....+.|...|-++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence 4544444445555555555444443 2223334444444444455555555554444432 222 23344444444455
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 006614 526 GMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 526 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
|++++|+..|++.+. +.|+ ...|+.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|...|..+|+..+|+.
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 555555555554444 2333 33444444445555555555555544442 2232 2334444444445555555555
Q ss_pred HHHHHH
Q 006614 604 LMKDMN 609 (638)
Q Consensus 604 ~~~~m~ 609 (638)
-+++.+
T Consensus 478 sY~~aL 483 (966)
T KOG4626|consen 478 SYRTAL 483 (966)
T ss_pred HHHHHH
Confidence 554444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=3.2e-19 Score=192.70 Aligned_cols=506 Identities=10% Similarity=0.017 Sum_probs=262.8
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++++.|+..|+.+.... |.+..++..+++.|.+.|++++|...+++.++. .|+...+...+..+ +++.+|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 366777777777776655 556777777777777777777777777777764 33333333323222 67777777
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHH--------HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHccCChHHHHH
Q 006614 182 IFYQIKSRKCKPTANTYNSMILM--------LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL-ISAFGKLGRDISAIR 252 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 252 (638)
+|+++.+..+. +...+..+... |.+.++..++++ .....+. |+....... ...|.+.|++++|++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~-~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAAS-PEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCC-CCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 77777766322 34444444443 444433333333 2211111 333333333 666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 253 LFDEMKENGLQPTAKIYTTLVSIYFK-LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++.++.+.+ +.+..-...|...|.. .++ +++..+++.. +.-+...+..+...|.+.|+.++|.++++++....
T Consensus 204 lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 666666654 2234444455555555 244 5555553321 11255555566666666666666665555543211
Q ss_pred CC-C----------------------------------------------------------------------------
Q 006614 332 CK-P---------------------------------------------------------------------------- 334 (638)
Q Consensus 332 ~~-p---------------------------------------------------------------------------- 334 (638)
.. |
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 00 0
Q ss_pred -----------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChHHH--HHH
Q 006614 335 -----------------DIVLINNLINVLGRAGRLEDALKLFNKMEAL--QCKPNVVTYNTVIKSLFESKAPASE--ASA 393 (638)
Q Consensus 335 -----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~--~~~ 393 (638)
+......+.....+.|+.++|..+++..... +..++....+.++..+.+.+..... +..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 0111111111223445566666666655441 1112222333444444444331100 000
Q ss_pred ----------------------HHHHHHh-CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 394 ----------------------WFEKMKA-NGV-LP--SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 394 ----------------------~~~~m~~-~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
..+.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 0011100 011 22 45555555555554 56666777666655542 33333333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006614 448 LINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM 527 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 527 (638)
+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 444445667777777777765443 2333334455556666677777777776666543 2222222223333334467
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
+++|...+++.++. .|+...+..+...+.+.|++++|...+++..... +.+...++.+..++...|++++|+..+++
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777666664 3456666666666667777777777777666532 12345555666666666777777776666
Q ss_pred HHhCCCCCCHHhHHHHHHHHhccCCccCC
Q 006614 608 MNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 608 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..+.. +-+...+..+..++...|+++.|
T Consensus 669 AL~l~-P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 669 AHKGL-PDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 66431 23444556666666666665543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-20 Score=180.22 Aligned_cols=435 Identities=20% Similarity=0.210 Sum_probs=343.4
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++...|.+--..+.++. +.+....-.+-.++.+..+.+....--....+. .+-...+|..+.+.+-..|++++|+..
T Consensus 62 gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 55566666555554444 222233333445566666666555444444443 344567899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT-YSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|+.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++.+ |+... .+.+...+-..|++.+|...+.+.++.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~- 213 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET- 213 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhHHHHHHHHhh-
Confidence 9999988544 78899999999999999999999999999876 55443 344555566689999999999998875
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006614 262 LQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340 (638)
Q Consensus 262 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 340 (638)
.|. ...|+.|...+-..|+.-.|+..|++....++. -...|..|...|...+.+++|...|.+.....+. ..+++.
T Consensus 214 -qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 214 -QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred -CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 343 567999999999999999999999999987544 4678889999999999999999999998876443 567888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 420 (638)
.+...|...|.+|.|...|++..+.. |+ =+..|+.|..++-..
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~-----------------------------------F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PN-----------------------------------FPDAYNNLANALKDK 333 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CC-----------------------------------chHHHhHHHHHHHhc
Confidence 89999999999999999999887633 22 124577777788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 500 (638)
|++.+|...|++..... +....+.+.|...+...|.+++|..+|....+. .+.-....+.|...|-..|++++|+..+
T Consensus 334 G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999988875 666778889999999999999999999998874 2233566888999999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006614 501 NEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 501 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
++..+ +.|+ ...|+.+...|-..|+.+.|++.+.+++.- .|. ...++.|...|-..|++.+|++-++.... +
T Consensus 412 kealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--l 485 (966)
T KOG4626|consen 412 KEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--L 485 (966)
T ss_pred HHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--c
Confidence 99887 4676 567899999999999999999999999985 444 67888899999999999999999999885 4
Q ss_pred CCCH-HHHHHHHHHHH
Q 006614 579 KPDA-VSYNTILGCLS 593 (638)
Q Consensus 579 ~p~~-~~~~~l~~~~~ 593 (638)
+||. ..|..++.++-
T Consensus 486 kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred CCCCchhhhHHHHHHH
Confidence 6663 45556665553
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2e-18 Score=174.36 Aligned_cols=498 Identities=15% Similarity=0.123 Sum_probs=377.6
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
...+++.+..+-... ++++.+.+.|.+-+.-.|++..+|.+...+..... +.-...|..+.++|...|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 355666666554444 56788999999999999999999999999877531 23345689999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRLFDEMK 258 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~ 258 (638)
|.+..+......+..+--+...+++.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p--~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP--NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc--chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99988764332244556688999999999999999999999875 56677778888887765 5677888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 006614 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK----GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---G 331 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 331 (638)
+.- +.|...|-.+...|.....+.. +..|.... ..+-.+.+...|.+...+...|++++|...|+..... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 753 4588889888888876655444 66665543 4455578899999999999999999999999998765 1
Q ss_pred CCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 332 CKPD------IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 332 ~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
..+| +.+-..+...+-..++++.|.++|..+.+.. |+-+....-+.+..+.......+..++...... ...
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~ 562 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSS 562 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccC
Confidence 2222 2234446677778889999999999998854 666655555544555545544446666666553 244
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHcC
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGK------------AKRYEAANELFLELKEYC 472 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~ 472 (638)
++..++.+...+.+...+..|.+-|+...+.- ..+|+++...|.+.|.. .+..++|+++|.++.+.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 66677778889999999999999777766542 23677777777776543 24678899999998886
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH
Q 006614 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVPDINSHN 551 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~ 551 (638)
.+.|...-|-+.-+++..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+...+. ....+.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 556788888899999999999999999999988652 34567889999999999999999999987765 4445788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH------------------HccCCHHHHHHHHHHHHhCCC
Q 006614 552 IILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL------------------SRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------------------~~~g~~~~A~~~~~~m~~~~~ 613 (638)
.|.+++.+.|++.+|.+.+.........-....||..+-.. ...+..+.|.++|.+|...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999888654333345555443222 234567889999999987653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.2e-18 Score=185.21 Aligned_cols=429 Identities=12% Similarity=0.001 Sum_probs=259.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+......+.+.|++++|+..|++.++ ..|++..|..+..+|.+.|++++|+..+.+..+..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 466777888999999999999999887 5677888888999999999999999999998887433 6778888999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
..|++++|+..|..+..... .+......++..+.. ..+........+.. +++...+..+.. |....+.+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcch
Confidence 99999999998887766543 222222222222211 12222233332221 122222222222 22211111111
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 287 GLVQEMKGKGCALT-VYTYTELIKG---LGRAGRVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 287 ~~~~~m~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
.-+....+. .+. ...+..+... ....+++++|...|+...+.+ ..| +...++.+...+...|++++|...++
T Consensus 278 ~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111111111 111 0111111111 123467888888888888764 122 44567777788888888888888888
Q ss_pred HHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 361 KMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 361 ~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+..+.. |+ ...|..+...+...|+..++ ...++...+.. +.+...|..+...+...|++++|...|++..+.. +
T Consensus 356 kal~l~--P~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 356 KSIELD--PRVTQSYIKRASMNLELGDPDKA-EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 887643 43 33455555555566666555 55555554432 3345666667777777777777777777777664 5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH------
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY------ 513 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 513 (638)
.+...+..+...+.+.|++++|...|++..+. .+.+...++.+...+...|++++|...|++..+..-..+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 55666666777777777777777777776664 34456666777777777777777777777766542110110
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.++.....+...|++++|.+++++.++.. +.+...+..+...+.+.|++++|.++|++..+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111222333567777777777766643 12344566667777777777777777777654
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=3.4e-17 Score=177.06 Aligned_cols=542 Identities=12% Similarity=0.050 Sum_probs=335.1
Q ss_pred cccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhh-cccCChHHHHHHhccccchHHHHHHHHHhhhCCCCCCCHHH
Q 006614 49 SKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVL-KMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTT 127 (638)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~ 127 (638)
..++++.+|....+...+.++....+..+.+...++.. ...++.......+....+.+.|...|+.+.... +-+..+
T Consensus 67 l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l~~~~--P~n~~~ 144 (987)
T PRK09782 67 FEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQ--KACDAV 144 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHHHHhC--CCChhH
Confidence 34455555555555544455544444434443333321 222222333333333355566666666554433 334445
Q ss_pred HHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006614 128 YMALIRC--------LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEI-VNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 128 ~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
+..+... |.+.++..++++ .......|.+.+.... .+.|.+.|++++|+.++.++.+.++. +....
T Consensus 145 ~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~ 219 (987)
T PRK09782 145 PTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAER 219 (987)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 5555554 554433333333 2111122234433333 67777777777777777777776533 45555
Q ss_pred HHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHH-------
Q 006614 199 NSMILMLMQ-EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIY------- 269 (638)
Q Consensus 199 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~------- 269 (638)
..+..+|.+ .++ +++..+++...+ .+...+..+...+.+.|+.++|.++++++...-.. |+..+|
T Consensus 220 ~~L~~ay~q~l~~-~~a~al~~~~lk-----~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 220 RQWFDVLLAGQLD-DRLLALQSQGIF-----TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred HHHHHHHHHhhCH-HHHHHHhchhcc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 666666666 355 666666443211 46667777777777777777777777766532111 221111
Q ss_pred -----------------------HHHHHHHHhcCCHHHHHHHHH-----------------------------HHHhCCC
Q 006614 270 -----------------------TTLVSIYFKLGEVEKALGLVQ-----------------------------EMKGKGC 297 (638)
Q Consensus 270 -----------------------~~li~~~~~~g~~~~A~~~~~-----------------------------~m~~~~~ 297 (638)
..++..+.+.++++.+.++.. .|.+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 112344445555554443321 1111100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCC---HHHHHHH--------------
Q 006614 298 ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGR---LEDALKL-------------- 358 (638)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~---~~~A~~~-------------- 358 (638)
-+......+.-...+.|+.++|.++|+..... ...++.....-++..|.+.+. ..++..+
T Consensus 374 -~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 374 -ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred -CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 02222223333456788899999999888762 122345566678888887766 3333322
Q ss_pred --------HHHHHH-CCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 359 --------FNKMEA-LQCKP---NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKA 426 (638)
Q Consensus 359 --------~~~~~~-~~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 426 (638)
.+.... .+..| +...|..+-..+.. ++..+++..+.+..... |+......+...+...|++++|
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHH
Confidence 111111 11212 44555555555554 66666634344444333 5655444455566789999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
...++++... +|+...+..+...+.+.|+.++|...++...+.. +.+...+..+.......|++++|...+++..+.
T Consensus 529 i~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l 605 (987)
T PRK09782 529 LAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI 605 (987)
T ss_pred HHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999998665 4555667777888999999999999999998864 334444444444555669999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 507 RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586 (638)
Q Consensus 507 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 586 (638)
.|+...|..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|+..+++..+.. +-+...+.
T Consensus 606 --~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~ 681 (987)
T PRK09782 606 --APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIR 681 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4788889999999999999999999999999974 3357788889999999999999999999998753 23577889
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006614 587 TILGCLSRAGMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
.+..++...|++++|...+++..+. .|+.
T Consensus 682 nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 682 QLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999999999999854 4554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4.7e-20 Score=186.29 Aligned_cols=303 Identities=14% Similarity=0.142 Sum_probs=212.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhc
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMILMLMQE 208 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 208 (638)
...+...|++++|+..|+++++.+ +.+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677888999999999988853 44567888888888899999999999988877532221 24677788888889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHH
Q 006614 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT----AKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~ 284 (638)
|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999887654 5677888888888889999999999988887643222 1245567777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|.+.++++.+.... +...+..+...+.+.|++++|.++++++.+.++.....+++.++.+|.+.|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888776432 45677778888888888888888888888764433345677788888888888888888888766
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK---TNRVEKAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 441 (638)
.. |+...+..+...+.+.|+..++ ..+++.+.+. .|+..++..++..+.. .|+.+++..+++++.+.++.++
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A-~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAA-QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHH-HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 43 4444445555555555555544 4444444433 3555555555554443 3355555555555555444444
Q ss_pred HH
Q 006614 442 PA 443 (638)
Q Consensus 442 ~~ 443 (638)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 43
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=9e-20 Score=184.25 Aligned_cols=308 Identities=18% Similarity=0.201 Sum_probs=184.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTELIKGLGR 313 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 313 (638)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777753 23455677777777777777777777777766432211 2456666777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------------- 177 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--------------------- 177 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH---------------------
Confidence 777777777777776652 2356667777777777777777777777765533111000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
.....+..+...+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.+.
T Consensus 178 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 178 -----------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred -----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 001123445556667777777777777776653 44455666666666666666666666666665432
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 474 CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNII 553 (638)
Q Consensus 474 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 553 (638)
.....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 222344555666666666666666666666554 244444455556666666666666666665553 3555555555
Q ss_pred HHHHHh---cCChHHHHHHHHHhhhCCCCCCHH
Q 006614 554 LNGLAK---SGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 554 ~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
+..+.. .|+.+++..++++|.+.++.|++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555443 335566666666666554444443
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.8e-18 Score=170.13 Aligned_cols=518 Identities=15% Similarity=0.109 Sum_probs=332.6
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
.+.|.+-|..+.++. ++++-.+..-+.+....++|..|..+|+.++... +.+|++ ..+..++.+.|+.+.|+..
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 578888888887766 6677677666777778889999999999877653 334443 3445677888888998888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQE---GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
|.+..+..+ .++.++-.|...-... ..+..++.++...-..++ .++...+.|...|.-.|++..++.+.+.+..
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 888888743 2344444333332222 345677777777777666 5777788888888888888888888888876
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006614 260 NGLQ--PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV 337 (638)
Q Consensus 260 ~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 337 (638)
.... .-...|..+..+|-..|++++|...|.+..+....--...+--+...+.+.|+++.+...|+...+..+. +..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~e 377 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYE 377 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHH
Confidence 5311 1234577788888888888888888887776543212344455677888888888888888888876433 566
Q ss_pred HHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHH----HHHHhCCCCCCHHH
Q 006614 338 LINNLINVLGRAG----RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWF----EKMKANGVLPSPFT 409 (638)
Q Consensus 338 ~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~----~~m~~~~~~~~~~~ 409 (638)
+...|...|...+ ..+.|..++.+..+.. ..|...|-.+-. +...++.... ..++ +.+...+-.+-+..
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq-l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ-LLEQTDPWAS-LDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH-HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHH
Confidence 7777777777664 4566677776666533 224444444433 3344444433 3333 33344555566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------
Q 006614 410 YSILIDGFCKTNRVEKAHLLLEEMEEK---GFPPC------PAAYCSLINGYGKAKRYEAANELFLELKEYC-------- 472 (638)
Q Consensus 410 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------- 472 (638)
.|.+...+...|++++|...|...... ...++ ..+-..+...+-..++.+.|.+.|..+.+..
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~yl 534 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYL 534 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHH
Confidence 777777788888888888887776544 11111 1122233444444455555555555544421
Q ss_pred -------------------------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH--
Q 006614 473 -------------------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVR-- 524 (638)
Q Consensus 473 -------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~-- 524 (638)
...++..++.+...|.+...+..|..-|+...+. ...+|.++.-.|.+.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 2233444444554555555555555544444332 122455555555554442
Q ss_pred ----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 006614 525 ----------AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594 (638)
Q Consensus 525 ----------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 594 (638)
.+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 234567888888887764 33677777788888888888888888888877532 244567788888888
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHhccCCccC
Q 006614 595 AGMFEEAARLMKDMNAK-GFEYDQITYSSILEAVGKVDEDRN 635 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 635 (638)
.|+|-.|+++|+...+. .-.-+..+...|.+++.+.|.+.+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 88888888888886653 344566677788888887776654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=9.5e-18 Score=177.56 Aligned_cols=334 Identities=10% Similarity=0.072 Sum_probs=235.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
-...++..+.+.|++++|..+++..+... +-++..+..++.+....|++++|...|+++.+..+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34456778888999999999998888753 555667777777888899999999999999887433 6778888889999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
+.|++++|++.|+++....+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999988765 5677888888899999999999999988876532 233344333 3477889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHH
Q 006614 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED----ALKLFNKM 362 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~ 362 (638)
..++.+.+....++...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++ |...+++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 99998877654445555566677888899999999999998887543 67777888888888898875 67777777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006614 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP 442 (638)
Q Consensus 363 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (638)
..... .+...+..+...+...|+..++ ...++...... +.+...+..+..++.+.|++++|...++++.+.+ +.+.
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA-~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~ 352 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKA-IPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTS 352 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch
Confidence 66432 1334555555555555555555 44445544432 2234445555666666666666666666666543 2222
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 443 AAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..+..+..++...|+.++|...|++..+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33333455566666666666666666553
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.8e-17 Score=173.98 Aligned_cols=334 Identities=11% Similarity=0.067 Sum_probs=225.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...++..+.+.|++++|..+++......+. +...+..++.+....|++++|++.|+++....+ .+...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHH
Confidence 455667778888888888888888777544 455566666777778888888888888888775 56667788888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 8888888888888888752 335667788888888888888888888877766544 23333333 34677888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH---HHHHHHHHH
Q 006614 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE---ASAWFEKMK 399 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~---~~~~~~~m~ 399 (638)
.++.+.+....++......+...+.+.|++++|...++.+..... .+...+..+-..+...|+..++ +...++...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 888887765444555555566777888888888888888876542 2344455555566666665542 355555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006614 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
... +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|...++.+..... .+...
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~ 354 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKW 354 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHH
Confidence 542 2345566666666667777777777777666654 44555666666666666777777776666665421 12223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 480 YAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
+..+..++...|++++|...|++..+.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333455566666667776666666554
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=5.1e-17 Score=172.80 Aligned_cols=432 Identities=14% Similarity=-0.016 Sum_probs=304.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+....+.+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++..+ .+...+..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 34566778888999999999999998876 56778888899999999999999999999998765 567788889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
+...|++++|+..|......+-. +......++..+.. ..+........+.... +...+..+.. +........+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcc
Confidence 99999999999888776654211 22222222222222 2233333333332211 2112222222 2222122222
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHHHCC-CCCC-hhhHHHHHHHHHhcCChHHHHHHH
Q 006614 321 YGLFMNMLKEGCKPDI-VLINNLINV---LGRAGRLEDALKLFNKMEALQ-CKPN-VVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ 394 (638)
..-+....+. .++. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...++.+-..+...|+..++ ...
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA-~~~ 353 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA-LAD 353 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH-HHH
Confidence 2222221111 1111 111111111 123478999999999998764 2343 44566666677778888877 777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006614 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
++...... +.+...|..+...+...|++++|...+++..+.. +.++.++..+...+...|++++|...|++..+. .+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DP 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-Cc
Confidence 77777652 2346688888999999999999999999998875 677899999999999999999999999999986 34
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH------
Q 006614 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN------ 548 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 548 (638)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++.....+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 567788889999999999999999999998753 4457889999999999999999999999999863221111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
.++..+..+...|++++|.+++++...... .+...+..+...+.+.|++++|.++|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 112222234456999999999999886532 24557889999999999999999999999864
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.5e-16 Score=172.31 Aligned_cols=418 Identities=13% Similarity=0.078 Sum_probs=280.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006614 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++....-.+......|+.++|++++.+..... +.+...+..+..++.+.|++++|.++|++.+...+ .+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 35677777777788888888888888888887632 44566788888888888888888888888887664 5566677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.+...+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...+
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88888888888888888888888762 33555 777888888888888888888888887554 5566666777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHcc-----CCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIV------LINNLINVLGRA-----GRL---EDALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~------~~~~li~~~~~~-----g~~---~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
..++|+..++.... .|+.. ....++...... +++ ++|
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~A-------------------------- 215 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRA-------------------------- 215 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHH--------------------------
Confidence 88888887776553 23210 011111111100 111 222
Q ss_pred HhcCChHHHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 006614 382 FESKAPASEASAWFEKMKAN-GVLPSPF-TY----SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA 455 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (638)
...++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+........+...|...
T Consensus 216 ----------l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 216 ----------LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred ----------HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 3333333321 1112111 11 111233456688888888888887765221122233356678888
Q ss_pred CCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-----------CCCC---HHHHHHH
Q 006614 456 KRYEAANELFLELKEYCGCS---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-----------CKPD---VYTYNAL 518 (638)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~l 518 (638)
|++++|...|+++.+..... .......+..++...|++++|...++.+.+.. -.|+ ...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 88888888888876642211 13445566667788888888888888877642 1123 1234566
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCC
Q 006614 519 MSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGM 597 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 597 (638)
...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.... .|+ ...+...+..+.+.|+
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCC
Confidence 677888899999999999988763 335777888888888999999999999988864 354 5566677778888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHH
Q 006614 598 FEEAARLMKDMNAKGFEYDQITYSSI 623 (638)
Q Consensus 598 ~~~A~~~~~~m~~~~~~p~~~~~~~l 623 (638)
+++|..+++++.+. .|+...-..+
T Consensus 443 ~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 443 WRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999853 4554433333
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.7e-17 Score=174.99 Aligned_cols=406 Identities=11% Similarity=0.037 Sum_probs=263.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.++..-.-.+.+....|+.++|++++...... .+.+...+..+..++.+.|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456666667778888889999998888888752 25556678888888888999999999998887763 2356777788
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
+..+...|++++|+..++++.+..+ .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 8888889999999999999888765 4555 8788888888899999999999888863 2355666677888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HH
Q 006614 282 VEKALGLVQEMKGKGCALTV------YTYTELIKGLG-----RAGRV---EDAYGLFMNMLKE-GCKPDIV-LI----NN 341 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~p~~~-~~----~~ 341 (638)
.++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 8888888876654 1221 01112222221 22234 6788888888754 2222221 11 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCK-PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP---SPFTYSILIDGF 417 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~---~~~~~~~li~~~ 417 (638)
.+..+...|++++|...|+.+.+.+.. |+... ..+...+...++.+++ ...++.+....... .......+..++
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A-~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKA-QSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHH-HHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 123445668888888888888775422 22211 1134456666666666 56666655432110 123445555567
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006614 418 CKTNRVEKAHLLLEEMEEKGF-----------PPC---PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483 (638)
Q Consensus 418 ~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 483 (638)
...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|.++++++... .+.+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 777888888888877766420 112 123445566666677777777777776665 34456666667
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
...+...|++++|+..+++..+.. |+ ...+......+...|++++|..+++++++.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777777777777777666643 43 444555555666667777777777777764
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=8.9e-16 Score=162.79 Aligned_cols=458 Identities=13% Similarity=0.074 Sum_probs=307.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP--SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
...+..+.+--.-+-...+.|+++.|+..|++.++. .|+. .++ .++..+...|+.++|+..+++..... .....
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~ 103 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSR 103 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHH
Confidence 333444455555566678889999999999888874 3432 344 77788888888899988888887321 22333
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
....+...+...|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 344446677888899999999999888776 45666667788888888888888888888875 45655565555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 356 (638)
...++..+|++.++++.+..+. +...+..+...+.+.|-...|.++..+- |+..+-..... =+.+.|.
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a 247 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAA 247 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHH
Confidence 5566666688888888887644 6777777888888888888887666552 22221111111 0112222
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHhcCCHHHHHHHH
Q 006614 357 KLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLPS-PFTY----SILIDGFCKTNRVEKAHLLL 430 (638)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~-~~~~~~-~~~~----~~li~~~~~~g~~~~A~~~~ 430 (638)
+..+......-. ...-|..+ +. +..-++.+.. .+-.|. ...| .-.+-++...|++.++++.|
T Consensus 248 ~~vr~a~~~~~~-~~~r~~~~----------d~-ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y 315 (822)
T PRK14574 248 EQVRMAVLPTRS-ETERFDIA----------DK-ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY 315 (822)
T ss_pred HHHhhccccccc-chhhHHHH----------HH-HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222211100000 00011100 11 1222233322 111122 1111 22345677889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 431 EEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 431 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
+.+...+.+....+...+.++|...++.++|..++..+..... +++......|..+|...+++++|..+++++.+
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999888776777888999999999999999999999876431 23444457788899999999999999999887
Q ss_pred CC-------------CCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 506 LR-------------CKPDV-YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 506 ~~-------------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
.. ..||- ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 31 11222 223445667888999999999999998864 3478888889999999999999999997
Q ss_pred HhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 572 KMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 572 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
..... .|+ ..+....+.++...|++++|..+.+...+.
T Consensus 475 ~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 475 AVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77643 454 556667888888899999999999888753
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=8e-18 Score=155.59 Aligned_cols=486 Identities=15% Similarity=0.161 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHhhhCCCC----CCHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL-SEIVNILGKAKMVNKALSIFYQIKSRKCK----PTANTYNS 200 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~ 200 (638)
.+...+.+-|..+.++.+|+..++-+++....|+.-.+ -.+.+.+.+...+.+|+++|.-....-+. ......+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 44555666677777777777777777766555554332 23445566777777777777665543111 12234555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH--------HHH
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY--------TTL 272 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--------~~l 272 (638)
+...+.+.|+++.|+..|+...+.. |+..+-..|+-.+...|+-++..+.|.+|+.....||..-| ..|
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5556677777777777777776654 66655544555555567777777777777654333332211 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTV----YTYTELIKGLGRAGRV----EDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
+.-..+.. .++.|.+.+-. +. .|-..+|.- .-.-++ +-+++.++.-.-..+..+ .-..-.-
T Consensus 359 l~eai~nd-------~lk~~ek~~ka-~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~d--lei~ka~ 427 (840)
T KOG2003|consen 359 LNEAIKND-------HLKNMEKENKA-DAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAID--LEINKAG 427 (840)
T ss_pred HHHHHhhH-------HHHHHHHhhhh-hHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhh--hhhhHHH
Confidence 21111111 11111111000 00 000000000 000011 111111111110000000 0011233
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFE-SKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 423 (638)
-|.+.|+++.|.++++-+.+..-+..+...+.|-..++. .|+....+..+-+..... -.-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcH
Confidence 477899999999999988776554444444444433333 333333334444433322 122333332223344568999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
++|.+.|++..... .........+.-.+-..|++++|++.|-++... ...+..+.-.+...|....+...|++++.+.
T Consensus 507 dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999998765 333444444555677889999999999988764 4457788888999999999999999999887
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 006614 504 KKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 504 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
... ++.|......|...|-+.|+-.+|.+.+-+--.. ++-|..+...|..-|....-.++|+.+|++.. =+.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 765 5667888999999999999999999887655443 45678888889999999999999999999976 4689999
Q ss_pred HHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCc
Q 006614 584 SYNTILG-CLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 584 ~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
-|..++. ++.+.|+++.|+++++...++ ++-|..+...|++.|...|-.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 9998765 556799999999999999876 888999999999999887743
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=3.8e-15 Score=158.01 Aligned_cols=441 Identities=12% Similarity=0.074 Sum_probs=275.3
Q ss_pred cccchHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHNS-TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
..++...|+..|+.+.+.. +.+. .++ .++..+...|+.++|...+++... ..+........++..+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4677889999999887654 3342 344 889999999999999999999872 1233445555557788999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+++|+++.+..+. +...+..++..+.+.++.++|++.++++.... |+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998554 57778888899999999999999999998865 6666665555555556777679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.. +.+...+..+...+.+.|-...|.++.++-.+. . +...+.-+ .. +.|.+.. +.+..++.. -
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~~-------~~~a~~v----r~a~~~~~~-~ 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-ER-------DAAAEQV----RMAVLPTRS-E 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-HH-------HHHHHHH----hhccccccc-c
Confidence 74 346778889999999999999999877653322 1 11111111 00 1111111 111111000 0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-CCCCChhh-----HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVVT-----YNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l 413 (638)
. . +---.+.|+.-++.+... +..|.... ..-.+.++...++..++ ...++.+...+.+.-..+-..+
T Consensus 261 ~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v-i~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL-IKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH-HHHHHHhhhcCCCCCHHHHHHH
Confidence 0 0 000123333333333221 11121111 11222334444444444 5555666655544333455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCc-
Q 006614 414 IDGFCKTNRVEKAHLLLEEMEEKG-----FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----------CSS- 476 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~- 476 (638)
.++|...++.++|..+++++.... .+++......|.-++...+++++|..+++.+.+... .|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 666777777777777776665432 122333345666666677777777777776665211 111
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 477 --ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 477 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
...+..++..+...|++.+|.+.++++.... +-|......+...+...|.+.+|.+.++...... +-+..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHH
Confidence 2234445666777777778887777776653 4566677777777777777888877776665542 22355556666
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 006614 555 NGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..+...|++++|..+.+.+.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 777777777777777777765
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.1e-14 Score=132.35 Aligned_cols=445 Identities=15% Similarity=0.173 Sum_probs=227.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG--KAKMVN-KALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+=|.+++. ...|...++--+|+.|.+.|++.++..-..+++.-+ ...++- .-++.|-.|...|-. +..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----
Confidence 34444433 335666666666777766666666655544444322 222221 223344444444322 22233
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
+.|.+.+ ++-+. -+ .+..+|..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 ---K~G~vAd---L~~E~---~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---- 255 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFET---LP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---- 255 (625)
T ss_pred ---ccccHHH---HHHhh---cC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----
Confidence 2333322 22221 11 345667777777777777777777777766655566777777776553322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHH
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED----AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED-ALKL 358 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~ 358 (638)
...+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..+
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 225666777777777777777777777777776554 34566666667777777777777776666665533 3334
Q ss_pred HHHHHH----CCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCCH
Q 006614 359 FNKMEA----LQCKP----NVVTYNTVIKSLFESKAPASEASAWFEKMKAN----GVLPS---PFTYSILIDGFCKTNRV 423 (638)
Q Consensus 359 ~~~~~~----~~~~p----~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~ 423 (638)
+.++.. ...+| |...|...+..|.+..+..-+ .++....... -+.|+ .+-|..+....|+....
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA-~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELA-YQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHH-HHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 433322 11221 334444555544433333222 4432222211 01122 12344555555666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
+.-...|+.|.-.-.-|+..+...++++....|.++-..+++.++...|..-+......+... |
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~----------------L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML----------------L 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH----------------H
Confidence 666666666655545555666666666666666666666666666554433222222222222 2
Q ss_pred HhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-
Q 006614 504 KKLRCKPDVY---TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE-I- 578 (638)
Q Consensus 504 ~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~- 578 (638)
......|+.. -+.....-|+ ..-.+.....-.+|.+.. ......+...-.+.+.|..++|.+++..+.+++ -
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 2221222211 1111111111 001111111222333332 334455666667788888888888888875432 2
Q ss_pred --CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 579 --KPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 579 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
.|......-+++.-.+.++...|...++-|...++
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 23333333555666677788888888888776554
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.2e-14 Score=129.34 Aligned_cols=460 Identities=18% Similarity=0.216 Sum_probs=290.5
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHH--HHhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRC--LDETRMIG-VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
++...+.-+|. .+++.|.+.++.+-..+++. |..+.++. .-|+-|-.|...| ..+..+| +.|++.+
T Consensus 129 ~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 129 REVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred cccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 44555666666 44567777777776666653 33333333 2233333333322 2222222 3444433
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
-+|+...+ +..+|.++|.++|+--..++|.++|++....... .+..+||.+|.+-.-. ...+++.+|..
T Consensus 198 -L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~----~~K~Lv~EMis 266 (625)
T KOG4422|consen 198 -LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYS----VGKKLVAEMIS 266 (625)
T ss_pred -HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhh----ccHHHHHHHHH
Confidence 33443332 7889999999999999999999999999876554 8999999998876533 23889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc----
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEK----ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKE---- 330 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~---- 330 (638)
..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998765 56788999999999999999999999999888754 55555555442
Q ss_pred CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 331 GCKP----DIVLINNLINVLGRAGRLEDALKLFNKMEALQ----CKPN---VVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 331 ~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
..+| |...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.- ..+++.|.
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~-~~~Y~~lV 425 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT-LKWYEDLV 425 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 2222 44556677788888999999988877664421 1222 12234445555665555544 78889998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006614 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
-+-+-|+..+...++++..-.|.++-.-+++.++..-|...+.....-+...+++.. ..|+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChH
Confidence 888889999999999999999999999999999998875554444444444444432 1121111
Q ss_pred HHHHHHHHHcc-CCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHH
Q 006614 480 YAVMIKHFGKC-GRLSDAV-DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV----PDINSHNII 553 (638)
Q Consensus 480 ~~~li~~~~~~-g~~~~A~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~l 553 (638)
-..+-..+.++ -++.++. ..-.+|.+.. -.....+.+.-.+.+.|..++|.+++.-+.+++-+ |......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 11111111111 0111111 1122334332 33445566666677788888888888877654322 333333345
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
++.-....+...|...++-|...+...-...-+.+...|.-+....+|+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 55556677788888888887665432222233344444443333333433
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=4.5e-13 Score=135.32 Aligned_cols=480 Identities=12% Similarity=0.049 Sum_probs=332.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
.......++.+...|++++|.+++.+.++.. +..+..|..|...|-..|+.+++...+-......+. |...|-.+...
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3455556666777799999999999998864 677889999999999999999999988877776544 77889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT----TLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g 280 (638)
..+.|.+++|.-.|.++++..+ ++...+---...|-+.|+...|..-|.++.....+.|..-+. ..++.+...+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999876 666666667788889999999999999998864322333232 3455666777
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------------------
Q 006614 281 EVEKALGLVQEMKGK-GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP------------------------- 334 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------------------------- 334 (638)
+-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 778888888877763 222355677888888999999999988888777622222
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 335 --DIVLINNLINVLGRAGRLEDALKLFNKMEALQ--CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTY 410 (638)
Q Consensus 335 --~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 410 (638)
+..++ .+.-++...+..+....+........ ..-+...|.-+..++...++..++ ..++..+.....--+...|
T Consensus 375 s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A-l~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 375 SYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA-LRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH-HHHHHHHhcCccccchhhh
Confidence 22221 22233344444444444555555544 334566778888888888988888 8888888877666677889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------cCCCCcHHHHHH
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE--------YCGCSSARVYAV 482 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~ 482 (638)
-.+..+|...|.++.|.+.|+..+... |.+..+-.+|...+-+.|+.++|.+.++.+.. ....|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 999999999999999999999998875 77778888888889999999999999988542 233455555566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHHcCChHHHHHHHH----
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLR-----CKP-----------------DVYTYNALMSGMVRAGMIDDAYSLLR---- 536 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~---- 536 (638)
....+...|+.++-+..-..|.... +-| ...+...++.+-.+.++......-..
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~ 611 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE 611 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence 6677778888777555444443211 111 11122233333333333222111111
Q ss_pred --HHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCH---HHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 537 --RMEEDGCVPDI--NSHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KPDA---VSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 537 --~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
--...|+..+. ..+.-++.++++.|++++|..+...+..... .++. ..=...+.+....+++..|...++.
T Consensus 612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11112222221 2345577788999999999999998886422 1222 2234566777889999999999999
Q ss_pred HHhC
Q 006614 608 MNAK 611 (638)
Q Consensus 608 m~~~ 611 (638)
|...
T Consensus 692 ~i~~ 695 (895)
T KOG2076|consen 692 VITQ 695 (895)
T ss_pred HHHH
Confidence 8864
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=3.8e-12 Score=123.87 Aligned_cols=497 Identities=12% Similarity=0.060 Sum_probs=333.8
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
..-.++++.+...- |.++..|...+ ...+.++|..++...++. |+.+...| .+|++..-++.|..++++
T Consensus 363 ~~K~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNk 431 (913)
T KOG0495|consen 363 KNKKRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNK 431 (913)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34466666665433 55667776554 345666688888887773 34444444 345556677888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC----NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
..+. ++.+...|.+-...--.+|+.+....+.++-+ ..|. ..+...|..=...|-..|..--+..+....+..|
T Consensus 432 aRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv-~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 432 AREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGV-EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcce-eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 8775 45578888777777777888888887777643 3333 3666677777777777788877777777777766
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 262 LQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 262 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
+.- -..||+.-...|.+.+.++-|..+|...++.-+. +...|...+..--..|..++-..+|++....-++ ....|
T Consensus 510 vEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lw 587 (913)
T KOG0495|consen 510 VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILW 587 (913)
T ss_pred cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHH
Confidence 543 2457777888888888888888888888776443 5566666666666778888888888888876333 55566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
......+...|++..|..++..+.+.... +...|-.-+.....+...+.+ ..+|.+.... .|+...|..-+...--
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era-R~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA-RDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH-HHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 66677777788888888888888775532 455666666666666666665 7777776654 5667777666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.++.++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++..+-.|-.+...-.+.|.+-.|..+
T Consensus 664 ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 78888888888888776 3666678888888888888888888888776665 455666777777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 006614 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
|++..-.+ +.+...|-..|..-.+.|+.+.|..+..++++. ++.+...|.--|...-+.++-......+++. .
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e 814 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----E 814 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----c
Confidence 88877664 456777888888888888888888888777764 3334444544444444444433333333322 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
-|+...-++...|....+++.|.++|.+..+.+ +.+.-+|--+.+-..++|
T Consensus 815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 244445555555555556666666666555332 222234444444444444
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3.1e-15 Score=138.70 Aligned_cols=445 Identities=13% Similarity=0.126 Sum_probs=261.5
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
..|+..|+-..+...|+..-..-..+-+++.+.+++..|++.+...+..-.+.+ ..+.+.+...+.+.|+++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 567888887777777766656666777889999999999999998887533333 3455666667899999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-----------CCCHHHHHHH-----HHHHHccC
Q 006614 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC-----------FPDTVTYSAL-----ISAFGKLG 245 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~l-----~~~~~~~g 245 (638)
-|+...+. .|+..+-..|+-.+..-|+-++..+.|.+|...... .|+....+-- ++-+-+..
T Consensus 298 sfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ 375 (840)
T KOG2003|consen 298 SFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKEN 375 (840)
T ss_pred hHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhh
Confidence 99999887 567776555666666789999999999999865432 1222222221 12222221
Q ss_pred Ch--HHHHHHHHHHHHCCCCCCHH---------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 246 RD--ISAIRLFDEMKENGLQPTAK---------------------IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 246 ~~--~~A~~~~~~m~~~g~~~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
.. ++++-.-.+++.--+.|+-. .-..-...|.++|+++.|++++.-+.+.+-.....
T Consensus 376 ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~sa 455 (840)
T KOG2003|consen 376 KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASA 455 (840)
T ss_pred hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHH
Confidence 11 11111111111111112210 00111234667788888888877776653322222
Q ss_pred HHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006614 303 TYTELI--KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 303 ~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
.-+.|- ..+-...++..|.++-+..+...-. +......-.+.....|++++|.+.|++.......-....||.=+.
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt- 533 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLT- 533 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhccc-
Confidence 222222 2222234566666666665543211 222322223334456788888888888766432222233333222
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 006614 381 LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA 460 (638)
Q Consensus 381 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (638)
+-..|+.+++ ...|-.+..- +.-+......+.+.|-...+..+|++++.+.... +|.|+...+.|.+.|-+.|+-.+
T Consensus 534 ~e~~~~ldea-ld~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 534 AEALGNLDEA-LDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHHhcCHHHH-HHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 2234444444 4444333321 1124455555666666677777777777666554 46667777777777777777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 006614 461 ANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV-RAGMIDDAYSLLRRME 539 (638)
Q Consensus 461 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 539 (638)
|.+.+-+--+. ++.+..+...|...|....-+++|+.+|++..- +.|+..-|..++..|. +.|++.+|.++|+...
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77766655543 556666666677777777777777777776543 3577777776665554 5677777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 006614 540 EDGCVPDINSHNIILNGLAKSG 561 (638)
Q Consensus 540 ~~~~~p~~~~~~~l~~~~~~~g 561 (638)
.. ++-|......|++.+...|
T Consensus 688 rk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 688 RK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred Hh-CccchHHHHHHHHHhcccc
Confidence 54 4446666666666665555
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=4.4e-12 Score=128.33 Aligned_cols=360 Identities=11% Similarity=0.067 Sum_probs=248.7
Q ss_pred cccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++++...|..++.-+.++. +.....|..+..+|-+.|+.+.+...+-.+... .+-|...|..+.....+.|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHH
Confidence 3688899999999888877 667889999999999999999888877665543 3556788999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHH
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
-.|.+..+..++ +....---+..|-+.|+..+|.+-|.++....+. .|-. .--..++.+...++.+.|++.++.
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999888533 5555556677888899999999999999886641 2222 223446667777888889999888
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------------------HHHHH
Q 006614 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY--------------------------TELIK 309 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------------------------~~li~ 309 (638)
.... +-..+...++.++..|.+...++.|......+......+|..-| .-+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7763 22345667888999999999999998888777662222221111 11122
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 006614 310 GLGRAGRVEDAYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP 387 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 387 (638)
++.+.+..+....+........ +.-++..|..+..+|...|++.+|+.+|..+......-+...|..+-..+...+..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3333344344444444444444 33456677888888888888888888888887766555666777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHccCCHH
Q 006614 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE--------KGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 388 ~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
+.| ...++...... +.+...-..|...+.+.|+.++|.+.++.+.. .+.+|+........+.+.+.|+.+
T Consensus 466 e~A-~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 466 EEA-IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHH-HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 777 55556655531 22334445566677888888888888887542 234455555555666677777766
Q ss_pred HHHHHHHH
Q 006614 460 AANELFLE 467 (638)
Q Consensus 460 ~A~~~~~~ 467 (638)
+-..+-..
T Consensus 544 ~fi~t~~~ 551 (895)
T KOG2076|consen 544 EFINTAST 551 (895)
T ss_pred HHHHHHHH
Confidence 64444333
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=3.3e-11 Score=117.48 Aligned_cols=454 Identities=12% Similarity=0.038 Sum_probs=239.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH----hhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006614 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ----IKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
+..-|+.|.+++..+.+. .+.++.+|.+-...--..|+.+...++..+ +...|+..+...|..=...+-..|..-
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 334455555665555443 455555665555555555655555555433 233455556666655555555556655
Q ss_pred HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 213 KIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+..+....+..|....| ..||..-...|.+.+.++-|..+|....+- ++-+...|...+..--..|..+.-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555555555544432122 235555555566666666666666655553 223445555555555555566666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
....-+ .....|......+-..|++..|..++.+..+..+. +...|-.-+.....+.+++.|..+|.+....+ |+.
T Consensus 576 av~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTe 651 (913)
T KOG0495|consen 576 AVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTE 651 (913)
T ss_pred HHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--Ccc
Confidence 555422 23444445555555556666666666666555433 45555555555566666666666666555432 444
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS-PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
..|.--+....-.+..+++ .+++++..+. -|+ ...|..+.+.+-+.++.+.|.+.|..-.+. +|.....|..+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA-~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEA-LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHH-HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 4444333333333333333 4444444443 233 234555555666666666666666554443 2444455555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 006614 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDD 530 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 530 (638)
.--+.|++-.|..+++...-. .+.+...|-..|.+-.+.|..+.|..+..+..+. ++.+...|..-|...-+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 555666666666666665554 3345556666666666666666666666555543 23334445444444433343222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 531 AYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 531 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
....+++ +..|+.....+...+....++++|.+.|.+.+..+ || -.+|.-+..-+.+.|.-++-.++++...
T Consensus 806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2222222 23355555555566666666666666666666432 22 3455555555566665555555555554
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.2e-11 Score=115.95 Aligned_cols=438 Identities=12% Similarity=0.072 Sum_probs=318.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..|......-..++++..|..+|++.+.... .+...|.-.+..-+++.+++.|..+++.....-+ .-...|-..+..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHHHH
Confidence 3444444444556778888888888887653 3777788888888899999999999999888653 223345555555
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
--..|++..|.++|+...+ ..|+...|++.|..-.+.+..+.|..+++...-. .|++.+|.-...--.+.|.+..|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 5567899999999999887 4799999999999999999999999999988764 58899998888888889999999
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChH---HHHH--
Q 006614 321 YGLFMNMLKEGC--KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPA---SEAS-- 392 (638)
Q Consensus 321 ~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~---~~~~-- 392 (638)
..+|+...+.-- .-+...+.+....-.++..++.|.-+|+-..+.-.+-. ...|..+...--+-|+.. +++.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999988876411 11233555555555667888889888888876432211 223333333222333322 2111
Q ss_pred --HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---HccCCHHH
Q 006614 393 --AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA-------AYCSLINGY---GKAKRYEA 460 (638)
Q Consensus 393 --~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~---~~~g~~~~ 460 (638)
--++.+...+ +-|-.+|--.++.-...|+.+...++|+..+.. +||-.. .|.-+--++ ....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1123333322 456777888888888889999999999999876 455322 121111111 24678999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHH----HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006614 461 ANELFLELKEYCGCSSARVYAV----MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR 536 (638)
Q Consensus 461 A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (638)
+.++|+...+. ++....++.- ....-.++.++..|.+++..... ..|...++...|..-.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 5555555444 34445578899999999988764 56889999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 537 RMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE-IKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 537 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
+.++-+.. |..+|......=...|+.+.|..+|+-.++.. +......|.+.|+--...|.++.|..+++++++.
T Consensus 462 kfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 462 KFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99997633 78888888888889999999999999998753 2334567888888888999999999999999864
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=8e-11 Score=110.55 Aligned_cols=458 Identities=12% Similarity=0.091 Sum_probs=339.6
Q ss_pred cccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.+.+...|..+|..+.... ..+...|..-+..=.++.+...|..+++..+.. .|.-...|...+.+--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3556788899998776544 446778999999999999999999999998874 2222345666667777789999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++|++-.+. .|+...|++.|..-.+-+..+.|..+|++..-.. |++.+|-.....-.+.|.+..|..+++...+.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~H---P~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVH---PKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999998775 8999999999999999999999999999998744 99999999999999999999999999998864
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHH-----HHHHHHH
Q 006614 261 -GL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTYTELIKGLGRAGR---VEDAYG-----LFMNMLK 329 (638)
Q Consensus 261 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~ 329 (638)
|- ..+...+.+....-.++..++.|.-+|+-.+++=+.-. ...|..+...--+-|+ +++++- -|+.+++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 11334566666666678889999999988887633211 3344444433334454 333332 3555566
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHH--------HHHhcCChHHHHHHHHHHHH
Q 006614 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIK--------SLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 330 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~--------~~~~~~~~~~~~~~~~~~m~ 399 (638)
.++. |-.+|-..++.-...|+.+...++|++.... ++|-. ..|...|. .-....+.+.. .++++...
T Consensus 317 ~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert-r~vyq~~l 393 (677)
T KOG1915|consen 317 KNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT-RQVYQACL 393 (677)
T ss_pred hCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH
Confidence 5544 7778888888888889999999999999873 44421 12222221 11233444444 77777777
Q ss_pred hCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 006614 400 ANGVLPSPFTYSILIDGFC----KTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS 475 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (638)
+ -++...+||..+.-.|+ ++.++..|.+++-..+. ..|...++...|..-.+.+++|.+..++++..+. .+.
T Consensus 394 ~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe 469 (677)
T KOG1915|consen 394 D-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-SPE 469 (677)
T ss_pred h-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChH
Confidence 6 35556778877666655 57889999999988774 4788899999999999999999999999999986 445
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
+..+|......-...|+.+.|..+|+-..+.. .......|.+.|+.-...|.++.|..+++++++.. +...+|-++.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHH
Confidence 67888888888888999999999999887642 12235567777777778999999999999999863 3444665554
Q ss_pred HHHH-----hcC-----------ChHHHHHHHHHhhh
Q 006614 555 NGLA-----KSG-----------GPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~-----~~g-----------~~~~A~~~~~~m~~ 575 (638)
..-. +.| ....|..+|++...
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4322 333 56678888888754
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.3e-11 Score=113.92 Aligned_cols=383 Identities=14% Similarity=0.080 Sum_probs=277.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--H
Q 006614 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT--E 306 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ 306 (638)
.|...+-.....+.+.|..+.|+..|...... .+-.-..|..|.... .+.+.+ ..... |...|..... .
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHHH
Confidence 55555555566667788888899888887764 122333343333322 222222 22221 1111222221 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhc
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFES 384 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~ 384 (638)
+..++-...+.+++..-.+.....|.+-+...-+....+.....|+++|..+|+++.+... --|..+|..++..- .
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 3456666778889999999999888876666666666777788999999999999988642 12556666665332 2
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANEL 464 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (638)
.+.. ..++.+-...--+--+.|..++.+.|.-.++.++|...|+...+.+ +....+|+.+..-|....+...|.+.
T Consensus 311 ~~sk---Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 311 DKSK---LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhHH---HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2111 1122211111112345678888899999999999999999999987 77788999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 006614 465 FLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (638)
++.+.+. .+.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|+.....|-
T Consensus 387 YRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 9999997 56788999999999999999999999999998864 55789999999999999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQH----SEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
.+...+..|...+-+.++..+|..+|++-++ .|...+ .....-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3678899999999999999999999998765 233322 222233567778899999999877766633 66667
Q ss_pred hHHHHHHHHhccC
Q 006614 619 TYSSILEAVGKVD 631 (638)
Q Consensus 619 ~~~~l~~~~~~~g 631 (638)
--+.|++.+.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7778888776643
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-11 Score=116.84 Aligned_cols=423 Identities=13% Similarity=0.024 Sum_probs=245.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+....+-+.++|.+++|++.|...+. +.|+ +..|.....+|...|++++..+.-.+.++.++. -+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 445556677889999999999999888 5677 777888888889999999999988888877432 344566667777
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCCH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
-..|++++|+.-..-..-.+.. .|..+--.+=+.+-+ .|....++-.+ ++ +-|......+....+-..-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--
Confidence 7788888776543333222211 111111111111111 12222222222 21 2233333333222221100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHcc
Q 006614 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKE---GCKP---D------IVLINNLINVLGRA 349 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~p---~------~~~~~~li~~~~~~ 349 (638)
...+...+..-|...-..+-..+.. ...+..|...+.+-... .... | ..+.......+.-.
T Consensus 266 ------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 266 ------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000000010000000000000 01222333332222110 0000 1 11222222233446
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 429 (638)
|+.-.|..-|+..++....++.. |--+-..|....+..+. +..|....+-+ +-|+.+|..-.+.+.-.+++++|..=
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~-~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKM-WKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHH-HHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 78888888888888765443332 44444455555555555 77777766653 33556677667777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
|++.++.. |.+...|..+.-+..+.++++++...|++.++. ++..+..|+.....+...++++.|.+.|+...+..
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-- 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-- 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--
Confidence 88888775 666677777777777888888888888888886 66778888888888888888888888888877652
Q ss_pred CC-------HHHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 510 PD-------VYTY--NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 510 p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|+ ..++ ..++ .+--.+++..|.+++.+..+...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 1111 1111 111347888888888888876432 356778888888888888888888888654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.7e-11 Score=122.63 Aligned_cols=289 Identities=10% Similarity=0.027 Sum_probs=131.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHhcCCHhHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEI-VNILGKAKMVNKALSIFYQIKSRKCKPTANTY--NSMILMLMQEGYYEKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 214 (638)
.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|...|.++.+. .|+.... ......+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666555543332 1223333222 22235556666666666665554 2232211 1224455556666666
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
.+.++++.+..+ .+...+..+...|.+.|++++|.+++..+.+.+..++ .....+-
T Consensus 173 l~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~--------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLE--------------------- 228 (398)
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHH---------------------
Confidence 666666655543 3445555555555555555555555555555432211 1111000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH
Q 006614 295 KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 295 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
..+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.. |+...
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l- 298 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL- 298 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH-
Confidence 012222222222333344444444444332 12355555566666666666666666665554421 22210
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
.++.+.+..++..++ ....+...+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+
T Consensus 299 -~~l~~~l~~~~~~~a-l~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 299 -VLLIPRLKTNNPEQL-EKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR 373 (398)
T ss_pred -HHHHhhccCCChHHH-HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 011111122222222 22222222221 223344445555555566666666666655554 3555555555555555
Q ss_pred cCCHHHHHHHHHHHH
Q 006614 455 AKRYEAANELFLELK 469 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~ 469 (638)
.|+.++|.+++.+..
T Consensus 374 ~g~~~~A~~~~~~~l 388 (398)
T PRK10747 374 LHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.5e-10 Score=108.64 Aligned_cols=383 Identities=15% Similarity=0.112 Sum_probs=251.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+..-|...+-.....+-+.|....|++.|.......+ ..|.+++....-.-+.+.+..+ .. |.+.|....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-----~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-----WFWSAWLELSELITDIEILSIL----VV-GLPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-----cchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHH
Confidence 4444666666666667788888999998888877543 2344443333222222222222 21 112121111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 006614 270 --TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK--PDIVLINNLINV 345 (638)
Q Consensus 270 --~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~ 345 (638)
--+..++-...+.+++..-.+.....|.+-+...-+....+.-...++++|+.+|+++.+..+- -|..+|..++..
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 1234555566677888888888887777655555555555666788889999999988887432 255667666544
Q ss_pred HHccCCHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 346 LGRAGRLED-ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 346 ~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 424 (638)
--...++.- |..++ .+-+ .+ +.|...+-+-|.-.++.+.+ ..+|+...+-+ +.....|+.+.+-|....+..
T Consensus 309 ~~~~skLs~LA~~v~-~idK--yR--~ETCCiIaNYYSlr~eHEKA-v~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVS-NIDK--YR--PETCCIIANYYSLRSEHEKA-VMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred HhhhHHHHHHHHHHH-Hhcc--CC--ccceeeehhHHHHHHhHHHH-HHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 322222211 11111 1111 22 22333333333334444444 77788777654 334567888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 425 KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
.|++-++..++.+ |.|-.+|..|.++|.-.+-..-|+-.|++.... .+.|..+|.+|..+|.+.+++++|+..|....
T Consensus 382 AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 382 AAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999886 888899999999999999999999999999886 56789999999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006614 505 KLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 505 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
..| ..+...+..|...|-+.++.++|...|.+.++. |...+ .....-|..-+.+.+++++|..+.......
T Consensus 460 ~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-- 536 (559)
T KOG1155|consen 460 LLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-- 536 (559)
T ss_pred hcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--
Confidence 876 335678999999999999999999999887762 33322 122222445566777777776655544321
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 579 KPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.-..++|..+++++++
T Consensus 537 ----------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 537 ----------------ETECEEAKALLREIRK 552 (559)
T ss_pred ----------------CchHHHHHHHHHHHHH
Confidence 2234666677766654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.2e-11 Score=123.78 Aligned_cols=287 Identities=14% Similarity=0.135 Sum_probs=131.9
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT--TLVSIYFKLGEVEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~ 284 (638)
.|++++|.+......+.. ++.. .|.....+..+.|+++.|.+.++++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 577777776666544432 1122 2222233335666666666666666553 23332221 23455556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI-NVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~ 363 (638)
|.+.++++.+..+. +...+..+...|.+.|++++|..++..+.+.+..++ .....+- .+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~~a------------------ 231 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQQA------------------ 231 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHH------------------
Confidence 66666666555433 455555556666666666666666666655543311 1111000 00
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
|..++.......+ .+....+++.+... .+.++.....+...+...|+.++|..++++..+. ++++.
T Consensus 232 ----------~~~l~~~~~~~~~-~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 232 ----------WIGLMDQAMADQG-SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred ----------HHHHHHHHHHhcC-HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 0000000000000 11111222222111 1234445555556666666666666666665553 33332
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
.. ++.+....++.+++.+..+...+. .+.|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 11 122222335555555555555443 3344444445555555555555555555555443 355555445555555
Q ss_pred HcCChHHHHHHHHHH
Q 006614 524 RAGMIDDAYSLLRRM 538 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m 538 (638)
+.|+.++|.+++++.
T Consensus 373 ~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 373 RLHKPEEAAAMRRDG 387 (398)
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555444
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.9e-10 Score=110.79 Aligned_cols=289 Identities=11% Similarity=0.062 Sum_probs=218.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 411 (638)
..-+......-.+-+...+++.+..++.+...+.. ++....+-.-|..+...|+...- ..+-..+.+. .+....+|-
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L-f~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL-FLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH-HHHHHHHHHh-CCCCCcchh
Confidence 33456666667777888899999999999887743 34555666667777777776554 4444555544 355678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 491 (638)
++.-.|...|+.++|.+.|.+....+ +.-...|..+...|+-.|..|+|...+..+.+.- +-...-+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhc
Confidence 99988889999999999999887765 4456688889999999999999999998887741 111112233445677889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCChHH
Q 006614 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCV----PDINSHNIILNGLAKSGGPKR 565 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~l~~~~~~~g~~~~ 565 (638)
..+-|.++|.+..... +-|...++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|.++|.+.+++++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999887652 456777777777777788999999999988732 011 124568889999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 566 AMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 566 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
|+..+++..... +-|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+.+.++..+..
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 999999988753 3478889999989999999999999999988 678999888888776544
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.2e-11 Score=124.55 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=151.4
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA--KIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 283 (638)
...|+++.|.+.+.+..+..+ -....+-....+....|+.+.|.+.+++..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 457788888887777666442 123334444566666777777777777766542 333 23333466666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHH
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN-VLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~ 362 (638)
.|.+.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+..+-. .+ .+ .++.
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~-------~l~~- 238 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IG-------LLDE- 238 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HH-------HHHH-
Confidence 777777777766543 5556666677777777777777777777766533 2222211110 00 00 0000
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG---VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 363 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+...+. ...+..+.... .+.+...+..+...+...|+.++|.+++++..+.. +
T Consensus 239 ----------------------~~~~~~-~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-p 294 (409)
T TIGR00540 239 ----------------------AMADEG-IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-G 294 (409)
T ss_pred ----------------------HHHhcC-HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-C
Confidence 000000 11111111111 11356667777777888888888888888877764 2
Q ss_pred CCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 440 PCPAAYCSLIN--GYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 440 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
.+......++. .....++.+.+.+.++...+. .+.|. ....++...+.+.|++++|.+.|+........|+...+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 22211100111 112234555555555555443 22233 44445555555555555555555532222224555555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 006614 516 NALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m 538 (638)
..+...+.+.|+.++|.++|++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555543
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=8.9e-12 Score=111.37 Aligned_cols=301 Identities=12% Similarity=0.120 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCC--CHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK-CKP--TANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~ 202 (638)
..|..-++.+. .++.+.|.+.|.+|++.. +.+..+.-++.+.|-+.|.++.|+++.+.+.++. ... .......|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45555555443 578899999999998843 4556677889999999999999999999998762 111 122345567
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFK 278 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~ 278 (638)
.-|...|-+++|.++|..+.+.+. --......|+..|-...++++|+++-+++.+.|-++.. ..|.-|...+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 778899999999999999988654 45667888999999999999999999988887644432 245566667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
..+.+.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++...+.++.--..+...|..+|.+.|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88899999999999887654 55566677888999999999999999999987666667888899999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006614 359 FNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT---NRVEKAHLLLEEMEE 435 (638)
Q Consensus 359 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~ 435 (638)
+..+.+.. ++...-..+-.......+...+...+.+++.. .|+...+..+++..... |...+...+++.|..
T Consensus 272 L~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99987754 44444444444444455555554444455554 48888888888765533 345555666666654
Q ss_pred C
Q 006614 436 K 436 (638)
Q Consensus 436 ~ 436 (638)
.
T Consensus 347 e 347 (389)
T COG2956 347 E 347 (389)
T ss_pred H
Confidence 3
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=2.1e-11 Score=122.68 Aligned_cols=287 Identities=11% Similarity=0.012 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
.|+++.|.+.+.+..+.. |+ ...+-....+..+.|++++|.+.+++..+..+. ++..........+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHH
Confidence 455555555554444432 22 222223334444555555555555555443211 11122222344444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HH---HHHHHhcCCHHHHHHHHHHH
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT-EL---IKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l---i~~~~~~g~~~~A~~~~~~~ 327 (638)
+.++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .- ..+....+..+++...+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555543 224444555555555555555555555555554432 222221 00 11112222222223333333
Q ss_pred HHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH--HHHHH-HHHhcCChHHHHHHHHHHHHhC
Q 006614 328 LKEGCK---PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY--NTVIK-SLFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 328 ~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~-~~~~~~~~~~~~~~~~~~m~~~ 401 (638)
.+..+. .+...+..++..+...|+.++|.+++++..+.. ||.... ..+.. .....++. ......++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~-~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN-EKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh-HHHHHHHHHHHHh
Confidence 333221 256666667777777777777777777776643 332210 11111 11111222 2223333333322
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 402 GVLPSP--FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 402 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 468 (638)
. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1122 3344555556666666666666663322222455555556666666666666666666554
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=2.2e-14 Score=136.99 Aligned_cols=258 Identities=19% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
+...+.+.|++++|++++++..... .+.+...|..+.......+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555554333222 1223333344444444555555555555555544332 33344444444 4555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 351 RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 429 (638)
++++|.+++....+.. ++...+...+..+...++...+ ..+++.+... ..+.+...|..+...+.+.|+.++|+..
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEA-EELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHH-HHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHH-HHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555544432211 1222222222222222222222 2222222111 1123344444445555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
+++..+.. |.++.....++..+...|+.+++.+++....+.. +.+...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 55555443 3344445555555555555555444444444431 2333344444444444444444444444444321 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 006614 510 PDVYTYNALMSGMVRAGMIDDAYSLLRR 537 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (638)
.|......+..++...|+.++|.++.++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp T-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 2333444444444444444444444443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.9e-11 Score=111.53 Aligned_cols=420 Identities=15% Similarity=0.079 Sum_probs=263.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..+-|.+.|++++|++.|.+..+. .|+ +.-|....-.|...|+++++.+.-.+.++.++ .-+..+..-.+++-+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P--~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP--DYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc--HHHHHHHHHHHHHHhh
Confidence 447788999999999999999987 566 78888999999999999999999999988764 3455667777788888
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 245 GRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG-KG--CALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 245 g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
|++++|+.=..-..- .|+. |..+- .+++-..+ ..|.....+-.. .+ +-|+.....+....+-..-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~---- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK---- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc----
Confidence 888887653322211 1111 11111 11111111 112222222222 12 23444333333332211000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHC-CCCCChh---------hHHHHHH--HHHhcCCh
Q 006614 321 YGLFMNMLKEGCKPDIVLINNLINVLGRA-GRLEDALKLFNKMEAL-QCKPNVV---------TYNTVIK--SLFESKAP 387 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~-~~~p~~~---------~~~~ll~--~~~~~~~~ 387 (638)
..+...+...|...-..+-..+... ..+..|...+.+-... ...++.. .-..++. .++-.|+.
T Consensus 267 ----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 267 ----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0000000001111111111111110 1122222222211000 0001100 0111111 12344666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 388 ~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
..+ ..-|+..+.....++ ..|-.+...|...++.++....|++....+ +.++.+|..-.+.+.-.+++++|..-|++
T Consensus 343 ~~a-~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 343 LGA-QEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhh-hhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 665 666777776643333 237777788999999999999999999987 78889999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC---
Q 006614 468 LKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV--- 544 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--- 544 (638)
.+.. .+.+...|-.+.-+..+.+++++++..|++.++. ++.-...|+.....+...+++++|.+.|+..++....
T Consensus 420 ai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred Hhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9986 4456777878888888999999999999999876 4556788999999999999999999999999874211
Q ss_pred --CCHHHH--HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 545 --PDINSH--NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 545 --p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+..++ -.++. +.-.+++..|.+++++..+...+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 498 ~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 122221 11111 12348999999999999865322 346788999999999999999999998653
No 48
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.8e-10 Score=104.22 Aligned_cols=454 Identities=12% Similarity=0.070 Sum_probs=274.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+.-+..++++..|+.+++--...+-.....+-.-+..++.+.|++++|..+|.-+... -.++...+-.+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4455566777777777765544332222233344556677888999999988887764 355667777777777778888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+|..+-.+.. .+...-..+++..-+.++-++-..+.+.+.+ ...---+|.......-.+.+|++++..
T Consensus 108 ~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88887765542 2333444555666677888777777777654 223344556665566678889999988
Q ss_pred HHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006614 292 MKGKGCALTVYTYTEL-IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 292 m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
....+ |+-...|.. .-+|.+..-++-+.++++--++. ++.+....|..+....+.=.-..|..-.+.+.+.+-.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-- 251 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-- 251 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--
Confidence 88763 344444433 34566777778787777777665 2223444454444333332222233333333322110
Q ss_pred hhhHHHHHHHHHhcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 371 VVTYNTVIKSLFESK-----APASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAY 445 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~-----~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (638)
. -..+.-+++.+ +-+.+ .+++-.+.+. .| ..-..++-.|.+.+++.+|..+.+++. |.++.-|
T Consensus 252 ~---~~f~~~l~rHNLVvFrngEgA-LqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 252 E---YPFIEYLCRHNLVVFRNGEGA-LQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred c---chhHHHHHHcCeEEEeCCccH-HHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 0 11122222221 11222 3333333222 12 233345666889999999999887764 3333333
Q ss_pred HHHHHHHHc-------cCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 446 CSLINGYGK-------AKRYEAANELFLELKEYCGCSSAR-VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 446 ~~li~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
..-.-.+.. .....-|...|+..-+.+...|.. --.++..++.-..++++.+..++.+...-...|...+|
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N- 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN- 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-
Confidence 322222233 334566677776665554443322 23456666677778899999999888765455555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHcc
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHN-IILNGLAKSGGPKRAMEIFTKMQHSEIKPDA-VSYNTILGCLSRA 595 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 595 (638)
+..+++..|++.+|.++|-......++ |..+|. .|.++|.+.++++-|++++-++... .+. .....+...|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 678899999999999999877765444 555655 4567888999999998888777532 222 3344566788899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHH
Q 006614 596 GMFEEAARLMKDMNAKGFEYDQITYS 621 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~~ 621 (638)
+.+--|.+.|+.+.. ..|++.-|.
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCccccC
Confidence 998888888888874 456665553
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.53 E-value=1.5e-08 Score=99.22 Aligned_cols=402 Identities=12% Similarity=0.175 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM--GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
..|..-+..+.++|+...-...|+..++. .+. ...+|...+......|-++.+..+|++..+. ++..-+-.+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 35555555666666666666666655543 121 2245555555555566666666666665554 3444455555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC-----------------------------------------CCC--HHHHHHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNC-----------------------------------------FPD--TVTYSALISA 240 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~-----------------------------------------~~~--~~~~~~l~~~ 240 (638)
.+++.+++++|.+.+...+..... .+| ...|.+|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 556666666655555544322100 022 1347788888
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CC------HHHHHHHHHHHHhCCC-
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL----------------GE------VEKALGLVQEMKGKGC- 297 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~m~~~~~- 297 (638)
|.+.|.+++|..++++.+..- .++.-|..+.+.|+.- |+ ++-...-|+.+...++
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 888888888888888877642 2344444444444321 11 1222223333332210
Q ss_pred ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 298 ----------ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP------DIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 298 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
+.++..|..-+ -+..|+..+-...|.+.++. +.| -...|..+...|-..|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 01233333322 22345666667777777654 111 234567777778888888888888887
Q ss_pred HHHCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcC
Q 006614 362 MEALQCKPN---VVTYNTVIKSLFESKAPASEASAWFEKMKANGVL-----------------PSPFTYSILIDGFCKTN 421 (638)
Q Consensus 362 ~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~-----------------~~~~~~~~li~~~~~~g 421 (638)
..+...+.- ...|..-...-.+..+...+ ..+.+....-.-. -+...|+..++.--..|
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~A-l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAA-LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHH-HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 765332211 11222112222223333222 3333322211000 02234555666666677
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHcc---CCHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKC---GRLSDAV 497 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~ 497 (638)
-++....+|+.+.+..+ .++.........+-...-++++.+++++-...-..|+ ...|+..+.-+.+. ..++.|.
T Consensus 492 tfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 77777788887776653 2333333333344455566677776666554433333 23455544444432 3567777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 006614 498 DLFNEMKKLRCKPDVYTYNALMSGM--VRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 498 ~~~~~m~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 540 (638)
.+|++..+ |++|...-+-.|+.+- -+.|-...|+++++++..
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777776 5555543333232221 234666666666666554
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.8e-10 Score=107.01 Aligned_cols=285 Identities=14% Similarity=0.077 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
-+......-.+-+...+++.+...+++...+..+ +....+..-|.++...|+..+-..+=.++.+.- +....+|-.+-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 3555555566667778888888888888877632 344455555667777777776666666666643 22456666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
--|...++..++ +++|.+...-.- .=...|-.....|.-.|.-|+|+..+...-+.- +-..--+.-+.--|.+.++.
T Consensus 320 ~YYl~i~k~seA-Rry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEA-RRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHH-HHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 666666777666 777766554321 113467777888888888999998888776541 22222233345567888999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHHcCChHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL----R--CKPDVYTYNALMSGMVRAGMIDDAY 532 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~ 532 (638)
+-|.+.|.++... .|.|+.+.+.+.-.....+.+.+|...|...... + ..-...+++.|.++|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988876 5667888888888777888899999999876521 1 1124567889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 533 SLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL 592 (638)
Q Consensus 533 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 592 (638)
..+++.+... +-|..++.++.-.|...|+++.|.+.|++.. .+.||..+-..++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999998863 4588899999999999999999999999988 5678887766666544
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=7e-14 Score=133.57 Aligned_cols=230 Identities=16% Similarity=0.177 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+.......++++.|.+.++.+...+ +.++..+..++.. ...+++++|..++.+..+. .++...+..++..
T Consensus 44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~ 119 (280)
T PF13429_consen 44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHH
Confidence 3444444444444555555555555554432 1133344444444 3445555555554444332 2233444444444
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.++++++.++++.+........+...|..+...+.+.|+.++|++.+++..+.. +.|....+.++..+...|+.++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHH
Confidence 555555555555555544332222344444444555555555555555555555432 1134444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
+.+++....+.. +.|...+..+..++...|+.++|+.+|++..+..+. |..+...+..++.+.|+.++|.++..+
T Consensus 199 ~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 199 AREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 444444444332 113333444445555555555555555555443222 444444555555555555555554444
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=2.2e-10 Score=105.88 Aligned_cols=293 Identities=13% Similarity=0.142 Sum_probs=148.2
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|+|.+|..+..+..+.+. .-...|..-..+.-+.|+.+.+-+++.+.-+..-.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5666666666666555443 23344555555555666666666666666554223444455555555666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006614 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
-+.++.+.++. +........++|.+.|++.+...+...+.+.|.--|...-. +
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-l------------------------- 227 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-L------------------------- 227 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-H-------------------------
Confidence 66665555443 44555555566666666666666666666555443322100 0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
...+|+.+++-....++...- ..+++..... .+-++..-..++.-+.+.|+.++|.++.++..+++..++ ...
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL-~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~ 300 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGL-KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR 300 (400)
T ss_pred --HHHHHHHHHHHHhccccchHH-HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH
Confidence 001112222111111111110 1222222211 122344445555566666666666666666666654443 111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 006614 448 LINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM 527 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 527 (638)
.-.+.+-++.+.-.+..+...+. .+.++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+
T Consensus 301 -~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 301 -LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE 376 (400)
T ss_pred -HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC
Confidence 11233445555555555544443 3334455556666666666666666666655543 3566666666666666666
Q ss_pred hHHHHHHHHHHHH
Q 006614 528 IDDAYSLLRRMEE 540 (638)
Q Consensus 528 ~~~A~~~~~~m~~ 540 (638)
..+|.++.++...
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666555543
No 53
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.51 E-value=9.3e-09 Score=100.98 Aligned_cols=423 Identities=17% Similarity=0.208 Sum_probs=225.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+...|+-++|......-++.+ .-+...|..+.-.+....++++|++.|......+.. |...|.-+.-.-++.|+++-.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 344555566665555554432 333344444444444455666666666666555322 555555555555555666665
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG-LQPTAKIYTTLV------SIYFKLGEVEKALG 287 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~ 287 (638)
.+.-..+.+..+ .....|..+..++.-.|+...|..++++..+.- -.|+...+.... ....+.|.+++|++
T Consensus 129 ~~tr~~LLql~~--~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQLRP--SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 555555555443 344555555556666666666666666655432 124444433222 23345566666666
Q ss_pred HHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHH-HHHHHHHH
Q 006614 288 LVQEMKGKGCALTVYT-YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-NLINVLGRAGRLEDAL-KLFNKMEA 364 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~-~~~~~~~~ 364 (638)
.+..-...- .|-.. -..-...+.+.+++++|..++..++... ||..-|. .+..++.+-.+.-++. .+|....+
T Consensus 207 ~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 207 HLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 665443321 12222 2233455667777777777777777653 3444333 3333443333333333 45554433
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC---
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME----EKG--- 437 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~--- 437 (638)
.- |....-..+--......+.......++..+.+.|+++- +..+...|-.....+-..++.-.+. ..|
T Consensus 283 ~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 KY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 21 11111111111111223334444566666777776543 2223322222111111111111111 110
Q ss_pred -------CCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 438 -------FPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508 (638)
Q Consensus 438 -------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 508 (638)
-+|... ++..++..+-+.|+++.|...++....+ .+.-+..|..-.+.+...|++++|...+++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 144444 3445677888889999999999988875 22335566666788888999999999999988765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHhcCChHHHHHHHHHhh
Q 006614 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINS--------HNII--LNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.+|...-.--..-..++.+.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++=|..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 45555444556666788899999999888888764 2221 1111 345777788877777666654
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.3e-11 Score=121.08 Aligned_cols=284 Identities=17% Similarity=0.112 Sum_probs=126.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
..+|...|.++.+.- .-+......+..+|...+++++|.++|+.+.+..+.. .+...|.+.+-.+-+.- ++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 345555555543331 1122333444555555555555555555555443321 23344444433322111 11111
Q ss_pred H-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006614 255 D-EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 255 ~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
. .+.+. -+..+.+|.++..+|.-+++.+.|++.|+...+.+.. ...+|+.+.+-+....++|.|...|+..+.-.+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 1 11111 1123445555555555555555555555555444322 3444555444455555555555555444432111
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 334 PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l 413 (638)
+-..|.-+...|.+.++++.|.-.|+++.+.+ | .+.+....+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P-----------------------------------~nsvi~~~~ 529 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--P-----------------------------------SNSVILCHI 529 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--c-----------------------------------cchhHHhhh
Confidence 11222233444444444444444444443322 1 122222333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH
Q 006614 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRL 493 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 493 (638)
...+.+.|+.|+|++++++....+ +.|+..-...+..+...+++++|+..++++++. .+.+..++..+...|-+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 344455555566666666555544 334444444444455555555555555555553 333444555555555555555
Q ss_pred HHHHHHHHHHHhC
Q 006614 494 SDAVDLFNEMKKL 506 (638)
Q Consensus 494 ~~A~~~~~~m~~~ 506 (638)
+.|+.-|.-+.+.
T Consensus 608 ~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 608 DLALLHFSWALDL 620 (638)
T ss_pred hHHHHhhHHHhcC
Confidence 5555555555443
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.3e-11 Score=121.13 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=205.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
+..+|...|...... +.-...+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+- +..+- -.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~L-s~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVAL-SY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHH-HH
Confidence 345666666663333 222334445566667777777777777776655321 123444554442221 11111 11
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
+-+.+.+. .+-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..... .
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-D 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-C
Confidence 11222222 24467899999999999999999999999999875 557889999999999999999999999998874 2
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 474 CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNII 553 (638)
Q Consensus 474 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 553 (638)
+.+-..|--+...|.+.++++.|.-.|++..+.+ +-+.+....+...+-+.|+.++|+.+++++.....+ |+..---.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2233445557788999999999999999998865 345666777788888999999999999999987544 44444445
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
+..+...+++++|+..++++++. .|+ ...|..+...|.+.|+.+.|..-|--|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 67778889999999999999964 554 5678888999999999999999888887543
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=7.1e-11 Score=119.17 Aligned_cols=247 Identities=16% Similarity=0.102 Sum_probs=154.8
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH
Q 006614 116 GRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
.+..|..|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++....++++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 346788899999999999999999999988 8888877778888889999999988888887776 5788
Q ss_pred HHHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCCCCCCHHHH-------------HHHHHHHHccCChHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEK---IHELYNEMCN----EGNCFPDTVTY-------------SALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~ 255 (638)
.+|..+..+|...|+... +.+.++.... .|...|....+ ...+....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998654 3332222211 11110111110 112222333344444444443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006614 256 EMKENGLQPTAKIYTTLVSIYFK-LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 256 ~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
.+...... .+... +++-... ...+++-..+.....+ .|++.+|..+++.-.-+|+.+.|..++.+|.+.|.+.
T Consensus 164 ~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 33321100 00101 1222222 1223333333333332 4677777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 006614 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFE 383 (638)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 383 (638)
+..-|-.|+-+ .++...+..+++-|...|+.|+..|+...+-.++.
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 77666666655 66667777777777777777777777666655555
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=8.7e-09 Score=101.15 Aligned_cols=462 Identities=14% Similarity=0.164 Sum_probs=311.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
|-.++.+ -..+++..-.++.+.+++. .+....+.....-.+...|+-++|......-....+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 3334443 3567888888888888773 4445566665555667789999999988887775444 78889988888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
..++++|+..|..+...++ .|...+.-+.-.-++.|+++.....-....+.. +.....|..++-++.-.|++..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999876 678888888777888899988888877777642 2356678889999999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 006614 288 LVQEMKGKG-CALTVYTYTELI------KGLGRAGRVEDAYGLFMNMLKEGCKPDIV-LINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 288 ~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~ 359 (638)
++++..+.. -.|+...|.... ....+.|..++|++.+..-... + .|-. .-.+-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999998764 245666554432 3456788888888877665443 1 1333 3345566788999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLF-ESKAPASEASAWFEKMKANGVLPSPFTYSIL-IDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~ 437 (638)
..+.... ||...|+..+..+. +-.+..++...++....+.- |....-..+ ++......-.+..-+++..+.+.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999866 88888887776655 35555555456666665541 111111111 111111222334556677778888
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cC----------CCCcHHH--HHHHHHHHHccCCHHHHHHHHH
Q 006614 438 FPPCPAAYCSLINGYGKAKRYEAANELFLELKE----YC----------GCSSARV--YAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+++ ++..+...|-.....+-..++...+.. .+ -+|.... +-.++..|-+.|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 334444444332222212222222211 10 1344433 4567888999999999999999
Q ss_pred HHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 006614 502 EMKKLRCKPDV-YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 502 ~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 580 (638)
..... .|+. ..|..-...+...|++++|..++++..+.. .||...-.--..-..++...++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~-- 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF-- 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--
Confidence 99875 4553 345555677889999999999999999865 34554443455556788999999999999987664
Q ss_pred CHHH--------HHHH--HHHHHccCCHHHHHHHHHHHH
Q 006614 581 DAVS--------YNTI--LGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 581 ~~~~--------~~~l--~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+... |-.+ ..+|.+.|++..|++=|....
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2221 2222 456778888887776555443
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=2.9e-10 Score=101.85 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC---HHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD---TVTYSAL 237 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l 237 (638)
+.|..-++.+. ..+.++|..+|-+|.+... -+.++.-+|.+.|-+.|..++|+.+.+.+.+.... +. ......|
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~qr~lAl~qL 113 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQRLLALQQL 113 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Confidence 34444444443 3578899999999987532 25666777888888999999999999988875221 11 1234556
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT----VYTYTELIKGLGR 313 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~ 313 (638)
..-|...|-+|.|.++|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 777888899999999998888754 23456677888888889999999998888887765543 2355666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
..+++.|..++.+..+.+.+ .+..--.+.+.+...|++..|.+.++.+.+.+..--..+...|..+|...|+..+.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 78888888888888876544 44444556777888888888888888887755332233344444444444444444
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=4.3e-10 Score=104.03 Aligned_cols=287 Identities=15% Similarity=0.099 Sum_probs=208.9
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
-.|++.+|+++..+-.+.+.. ....|..-+.+--+.|+.+.+-.++.++.+..+. ++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHH
Confidence 479999999999998887644 3445666667778899999999999999887433 66777788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV-------YTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
.-++++.+.+ +-+.........+|.+.|++.....++.++.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999875 347888999999999999999999999999999876553 46677777776677777766677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 006614 325 MNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~ 404 (638)
++..++ .+.++..-.+++.-+.++|+.++|.++.++..+.+..|+... ++ ...+-++...-....-......+..
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCCC
Confidence 776554 344666777888899999999999999999888776665221 11 2334444444422222333334333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 405 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+..+.++...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.++.++...
T Consensus 328 --p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 --PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred --hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 355666666777777777777777755554 56666666666666666666666666666553
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.3e-09 Score=102.09 Aligned_cols=418 Identities=14% Similarity=0.141 Sum_probs=222.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH--HHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA--LISA 240 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~ 240 (638)
+.+=++.+...|++++|.....++...+ +.+...+.+-+.++++.++|++|+.+.+.-.. ..+++. +=.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------hhhcchhhHHHH
Confidence 3344567778888888888888888776 44667777777888888888888855544221 112222 3455
Q ss_pred HH--ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC
Q 006614 241 FG--KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL-GRAGR 316 (638)
Q Consensus 241 ~~--~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~ 316 (638)
|| +.++.|+|+..++ |..+ |..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+- ...+
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~- 156 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVA- 156 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHH-
Confidence 55 6788888888887 3333 3446666677888899999999999998776432 222222111 0111
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLIN---NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
.+... +.+......| ..+|. .....+...|++.+|+++++.....+.+ .+. .++..+ +.
T Consensus 157 --a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~e--Ee 218 (652)
T KOG2376|consen 157 --AALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTNE--EE 218 (652)
T ss_pred --HhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccch--hh
Confidence 01111 1122222222 22333 3344567789999999999887432110 000 000000 00
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHH-----------------
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAA----YCSLINGY----------------- 452 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~----------------- 452 (638)
+-.++ ++ .-..+.-.+-..|+.++|..++...++.. ++|... .|.++..-
T Consensus 219 ie~el-------~~-IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 219 IEEEL-------NP-IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred HHHHH-------HH-HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 00000 00 01122233444555555555555555443 222211 11111100
Q ss_pred ----------------------------HccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--ccCCHHHHHHHHHH
Q 006614 453 ----------------------------GKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG--KCGRLSDAVDLFNE 502 (638)
Q Consensus 453 ----------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~ 502 (638)
.-.+..+.+.++-.... +..|. ..+..++.... +...+..|..++..
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 00111122222111111 11122 22333333222 12245667777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 006614 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR--------RMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.-+..-.......-..+......|+++.|.+++. ...+.+..|-.+ ..+...+.+.++.+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHH
Confidence 6554311223445556666778999999999988 555555455444 446667777777777777777765
Q ss_pred hC--CCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 006614 575 HS--EIKPDAVSYNT----ILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 575 ~~--~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
.. .-.+....... +...-.+.|+-++|..+++++.+. .++|..+...++.+|++.+
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcC
Confidence 41 11122222333 333335679999999999999875 3677778888888887754
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1e-09 Score=99.41 Aligned_cols=431 Identities=16% Similarity=0.139 Sum_probs=271.7
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
.-+....++..|+.+++--...+-+-...+-..+...+...|++++|+..|..+..... ++...+-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHH
Confidence 34455678888888887765443322222333455667789999999999999988655 6666666666666677889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
.+|.++-++..+ ++-.-..+.+..-+.++-++-..+.+.+.+. ...--+|.......-.+++|+++|...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999888766443 4445556677777888888877777766542 233344555555666889999999999
Q ss_pred HHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 328 LKEGCKPDIVLINN-LINVLGRAGRLEDALKLFNKMEALQCKPNV-VTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 328 ~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
+..+ |+-...|. +.-+|.+..-++-+.++++-....- ||+ ...|......++.-+...+ +.-...+.+++...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~a-e~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTA-EDEKKELADNIDQE 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchh-HHHHHHHHhccccc
Confidence 8863 34444443 4457788888999999988876633 443 4444444333333222222 22223344333211
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006614 406 SPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480 (638)
Q Consensus 406 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (638)
| ..+.-.++. .+-+.|++++--+.+. - +.+-..|+-.|.+.+++.+|..+..++.. ..+.-|
T Consensus 253 ----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~Ey 319 (557)
T KOG3785|consen 253 ----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEY 319 (557)
T ss_pred ----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCC----CChHHH
Confidence 1 122223332 3557888888777654 2 34555677788999999999998877643 122222
Q ss_pred HHHHHHHHcc-------CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 481 AVMIKHFGKC-------GRLSDAVDLFNEMKKLRCKPDVY-TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNI 552 (638)
Q Consensus 481 ~~li~~~~~~-------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 552 (638)
-.-.-.+... ..++-|...|.-.-+.+..-|.. --.++..++.-..++++.+..++.....-...|...+ .
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-N 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-H
Confidence 2222222233 34556777777655544333322 2344555666667889999999888875433344444 4
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHhcc
Q 006614 553 ILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN-TILGCLSRAGMFEEAARLMKDMNAKGFEYDQI-TYSSILEAVGKV 630 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~ 630 (638)
+..+.+..|++.+|.++|-++....++ |..+|. .+.++|.+.|+.+-|-.++-++. -..+.. ....+..-|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHH
Confidence 788999999999999999988765555 555555 66789999999999977766553 333333 334455667776
Q ss_pred CCc
Q 006614 631 DED 633 (638)
Q Consensus 631 g~~ 633 (638)
+++
T Consensus 475 ~eF 477 (557)
T KOG3785|consen 475 NEF 477 (557)
T ss_pred HHH
Confidence 654
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=3.1e-08 Score=97.06 Aligned_cols=451 Identities=12% Similarity=0.150 Sum_probs=241.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
-+++|...+..+.++|++..-...|+..+.. .+......|...+...-..|-++-++.+|++.++.. +..-+-.
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHH
Confidence 4578888899999999999999999988654 344456678888888888999999999999999844 4447778
Q ss_pred HHHHHccCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC--HHHHHH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKEN------GLQPTAKIYTTLVSIYFKLGEVEK---ALGLVQEMKGKGCALT--VYTYTE 306 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~--~~~~~~ 306 (638)
+..+++.+++++|.+.+...... .-+.+...|.-+-+...++-+.-. ...+++.+... -+| ...|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 89999999999999999887643 124466677777777766554332 22334444332 233 357899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHHH
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR----------------------LEDALKLFNKMEA 364 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~~~~ 364 (638)
|.+.|.+.|+++.|..+|++.+..-. .+.-|..+.+.|++-.. ++-.+.-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999999999999999887522 33344445555543211 1222222333222
Q ss_pred CCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHH
Q 006614 365 LQC-----------KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS------PFTYSILIDGFCKTNRVEKAH 427 (638)
Q Consensus 365 ~~~-----------~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~ 427 (638)
.+. ..++.+|..-+. +..++..+. ...+.+.... +.|. ...|..+.+.|-..|+++.|.
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~-i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ-INTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH-HHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 110 011112211111 111222222 2222222221 1111 123445555555666666666
Q ss_pred HHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------------cHHHHHHHHHHH
Q 006614 428 LLLEEMEEKGFPPC---PAAYCSLINGYGKAKRYEAANELFLELKEYCGCS-----------------SARVYAVMIKHF 487 (638)
Q Consensus 428 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~ 487 (638)
.+|++..+...+-- ..+|..-...-.+..+++.|.++.+......-.+ +..+|...++.-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 66666655432211 2344444444445556666666555554321110 122344444444
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-c--CCh
Q 006614 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAK-S--GGP 563 (638)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~-~--g~~ 563 (638)
...|-++....+++++.+..+.......| ....+-.+.-++++.+.|++-+..-..|+ ...|+..+.-+.+ - .++
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 45555556666666665554322211111 11122334445556665555444322233 2344444433322 1 245
Q ss_pred HHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHH
Q 006614 564 KRAMEIFTKMQHSEIKPDAVS--YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ--ITYSSILE 625 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 625 (638)
+.|..+|++..+ |.+|...- |-.....=-+-|....|..++++.... +++.. ..|+..|+
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 666666666665 44433211 111112222345566666666665432 33332 24555544
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.4e-10 Score=105.43 Aligned_cols=199 Identities=12% Similarity=0.038 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...+..+...+...|++++|.+.+++.++.. +.+...+..+...+...|++++|...|++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 3455556666666666666666666655532 33445555555666666666666666666555432 244455555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.|++.............+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655432111223344444555555555555555555555432 1233444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
|.+.+++..+.. +.+...+..+...+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555554431 223344444444444555555555544443
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.40 E-value=2.6e-10 Score=119.32 Aligned_cols=266 Identities=14% Similarity=0.055 Sum_probs=186.0
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------cCCCHHHHHHHHHHhhhC
Q 006614 124 NSTTYMALIRCLD-----ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG---------KAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~ 189 (638)
+...|...+++.. ..+.+++|...+++.++.. +.+...+..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555554431 2346889999999998853 334556666655443 234588999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKI 268 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~ 268 (638)
.+. +...+..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+++..+.. |+ ...
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 544 788888898999999999999999999999875 567788888999999999999999999998864 43 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 348 (638)
+..++..+...|++++|...+++......+-+...+..+...+...|+.++|...+.++..... .+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 4445556777899999999999987664332555677788888899999999999988766522 244455666667777
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 006614 349 AGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~ 402 (638)
.| +.|...++.+.+. ...+....+..++.++ .|+...+ ..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~--~g~~~~~-~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVA--HGEAIAE-KMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH--HhhhHHH-HHH-HHhhccc
Confidence 77 4777777766442 2233334444444333 3333332 333 6666653
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=3.2e-10 Score=105.65 Aligned_cols=202 Identities=12% Similarity=0.058 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+..+ .+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Confidence 345677888888899999999999999887764 23577888888889999999999999999888765 566778888
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
...+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence 8888899999999999998886432 224456777788888899999999999888876543 56677788888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+++|...+++..+. .+.+...+..++..+...|+.+.|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988888876 334566667777888888888888888777654
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.9e-11 Score=106.19 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=191.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHh
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT-YNSMILMLMQ 207 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 207 (638)
+-+.++|.+.|.+.+|.+.++..+. -.|-+.+|..+.++|.+-.+++.|+.+|.+-.+. .|-.+| ..-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 5678999999999999999998887 4677889999999999999999999999998876 444444 4556788888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.++.++|.++|+...+..+ .++.....+...|.-.++.+-|+.+++++.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8999999999999998776 67888888888888899999999999999999864 88888888888888999999998
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006614 288 LVQEMKGKGCAL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 288 ~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
-|+.....--.| -...|..+.......||+..|.+.|+-.+..+.. ....+|.|.-.-.+.|++++|..+++...+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888877643323 2456667777788899999999999988877654 6778888888888999999999999988764
Q ss_pred C
Q 006614 366 Q 366 (638)
Q Consensus 366 ~ 366 (638)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-07 Score=88.13 Aligned_cols=274 Identities=14% Similarity=0.062 Sum_probs=177.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL-FESKAPASEASAWFEKMKANGVLPSPFTY 410 (638)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 410 (638)
++-|+.....+...+...|+.++|...|+.....+ |+..+-.-+-..+ .+.|+.... ..+...+.... ..+...|
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~-~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD-SALMDYLFAKV-KYTASHW 303 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH-HHHHHHHHhhh-hcchhhh
Confidence 33455566666666666666666666666655422 3332221111111 122222222 22222222110 1122333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
-.-.......++++.|+.+-++.++.+ +.+...|..-...+...|+.++|.-.|+..... -+.+...|.-|+++|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhh
Confidence 333444556778888888888888775 566677777778888889999999999888875 446788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 006614 491 GRLSDAVDLFNEMKKLRCKPDVYTYNALM-SGMVR-AGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 567 (638)
|++.+|..+-+...+. ++.+..+.+.+. ..|.. ...-++|.+++++.+.. .|+ ....+.+...+...|..++++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 9999988877765543 234455555442 22322 22347788888887764 455 445667778888899999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
.++++... ..||....+.+.+.+...+.+++|.+.|....+. .|+..
T Consensus 459 ~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 459 KLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred HHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 99998774 3688888899999999999999999988888743 45443
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1.4e-09 Score=113.95 Aligned_cols=268 Identities=11% Similarity=0.014 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 006614 157 VMGPSVLSEIVNILGK-----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ---------EGYYEKIHELYNEMC 222 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 222 (638)
..+...|...+++... .+..++|...|++..+..+. +...|..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3455555555555321 23568999999999987433 56667766665542 345899999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+.++ .+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.++. +..
T Consensus 332 ~ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 9876 678888899999999999999999999999874 345778889999999999999999999999988655 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHH
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY-NTVIKSL 381 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~ 381 (638)
.+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...++++... .|+.... +.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 334445556778999999999999887643335556778888999999999999999987653 2444443 4444445
Q ss_pred HhcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 382 FESKAPASEASAWFEKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 437 (638)
+..++ .+ ...++.+.+. ...+....+ .-..+.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g~--~a-~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNSE--RA-LPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccHH--HH-HHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 55554 22 4434444332 112222222 33445566777777666 7777654
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.37 E-value=5.8e-09 Score=105.26 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=83.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
++..+.+.|...|++++|++.+++.++. .+..+..|..-...+-+.|++++|.+.++...+.. .-|...-+-....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 4455566677777777777777777775 23346667777777777777777777777777654 235555555666677
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 524 RAGMIDDAYSLLRRMEEDGCVPDINS------H--NIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~p~~~~------~--~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+.|++++|.+++......+..|-... | .-...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777766553322111 1 2235566777777777766666543
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.3e-07 Score=92.20 Aligned_cols=448 Identities=13% Similarity=0.070 Sum_probs=230.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH--HHHH--
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM--ILML-- 205 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~-- 205 (638)
+=++.+..+|++++|.+....++..+ +-+...+..-+.++.+.+++++|+.+.+.-.. ..+++.. =.+|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34455666777777777777776653 45555666666667777777777744333211 1111221 2333
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
.+.++.++|+..++-..+ .|..+...-...+.+.|++++|+.+++.+.+.+.+. +...-..++..-.
T Consensus 90 Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------- 157 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------- 157 (652)
T ss_pred HHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence 356777777777662211 333455555566667777777777777776654321 1111111111100
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHc-------CCCCCH------H-HHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTEL---IKGLGRAGRVEDAYGLFMNMLKE-------GCKPDI------V-LINNLINVLG 347 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~------~-~~~~li~~~~ 347 (638)
+... +.+......| ..+|..+ .-.+...|++.+|+++++...+. +-.-+. . .--.+..++-
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0000 1111111122 2233222 23455667777777777666221 100001 1 1123445566
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhh----HHHHHHHHHhcCChHHHHHHHHHHHHhCCC----------CCCHHHH-HH
Q 006614 348 RAGRLEDALKLFNKMEALQCKPNVVT----YNTVIKSLFESKAPASEASAWFEKMKANGV----------LPSPFTY-SI 412 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~----------~~~~~~~-~~ 412 (638)
..|+.++|..++....+..+. |... -|.++..--...-.+......++....... .-..+.. +.
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888877777765532 3221 222221111111111111111111110000 0000011 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 006614 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG--KAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 413 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
++. ...+..+.+.++....... .|. ..+..++..+. +.....++.+++....+........+.-.++......
T Consensus 315 lL~--l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLA--LFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHH--HHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 121 2233334444443332211 232 23333333332 2235677777777777654444466677778888899
Q ss_pred CCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH----HH
Q 006614 491 GRLSDAVDLFN--------EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCVPDINSHNIIL----NG 556 (638)
Q Consensus 491 g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~----~~ 556 (638)
|+++.|++++. .+.+.+..|- +...+...+.+.++.+.|..++++.+.. .-.+.....++++ ..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999998 5555444444 4455666777888888888888877642 0112223333333 33
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 557 LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
-.+.|+.++|..+++++.+.+ .+|..+...++.+|++. +.+.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 356799999999999998743 46788888888888876 677887766554
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=2.1e-07 Score=94.23 Aligned_cols=295 Identities=15% Similarity=0.119 Sum_probs=187.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE- 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 208 (638)
-...++...|++++|.+.++.-.+. +......+......+.+.|+.++|..+|..+.++++. |..-|..+..++.-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3455677888888888888775442 3444566777788888888888888888888888543 555555555555222
Q ss_pred ----CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 209 ----GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD-ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 209 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
...+...++|+++.... |.......+.-.+..-..+ ..+..++..+..+|++ .+|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 25677788888887655 4333333332222222222 2455566677777754 35556666666555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006614 284 KALGLVQEMKGK----G----------CALTV--YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 284 ~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 347 (638)
-..+++...... + -.|+. +++..+...|...|++++|+.+.++.++..+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555555554422 1 12333 34455677788888888888888888887433 4677888888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH--H------HHHHHHHHHHh
Q 006614 348 RAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP--F------TYSILIDGFCK 419 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~--~------~~~~li~~~~~ 419 (638)
+.|++.+|.+.++.....+.. |...-+-....+.+.|+..++ ...+......+..|-. . -......+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A-~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEA-EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHH-HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776533 455555556666677776666 6666666655532221 1 11334567888
Q ss_pred cCCHHHHHHHHHHHHh
Q 006614 420 TNRVEKAHLLLEEMEE 435 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~ 435 (638)
.|++..|++.|....+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888877776654
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=4.6e-12 Score=84.34 Aligned_cols=50 Identities=40% Similarity=0.747 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=5.6e-08 Score=97.58 Aligned_cols=425 Identities=13% Similarity=0.021 Sum_probs=231.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.-++.+|..+.-++..+|+++.+.+.|++....- ......|+.+...|...|.-..|+.+.++-....+.++|...+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4467777777777888888888888888876542 336677777877888888888888888777665533233344433
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHhCCCCCC
Q 006614 237 LISAFG-KLGRDISAIRLFDEMKEN--GL--QPTAKIYTTLVSIYFK-----------LGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 237 l~~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.-+.|. +.+.+++++.+-.+..+. |. ......|..+.-+|.. .....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 333333 346666666666665541 11 1123334444333332 11245677777777776544 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 006614 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
....-.+.--|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+.....-. -|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhhh
Confidence 2222223344667778888888888888775566777888888888888888888888776643210 011111111111
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHH
Q 006614 381 LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC------KTNRVEKAHLLLEEMEE--KGFPPCPAAYCSLINGY 452 (638)
Q Consensus 381 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~ 452 (638)
-..-++..++ .. |...++..+- +.++-....++...+.- ........++..+....
T Consensus 557 ~~~~~~~e~~-l~---------------t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 557 ELTFNDREEA-LD---------------TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhcccHHHH-HH---------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 1112222222 11 1111111111 11111111111111110 01111122222222222
Q ss_pred HccC---CHHHHHHHHHHHHHcCCC--Cc------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 453 GKAK---RYEAANELFLELKEYCGC--SS------ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSG 521 (638)
Q Consensus 453 ~~~g---~~~~A~~~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 521 (638)
...+ ..+.. +.+.... |+ ...|......+.+.+..++|...+.+..+.. +-....|......
T Consensus 621 a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~ 693 (799)
T KOG4162|consen 621 ASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL 693 (799)
T ss_pred Hhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence 1111 11111 1111111 11 2345566667777777777777776666542 3345556666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 522 MVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAME--IFTKMQHSEIKPDAVSYNTILGCLSRAGMF 598 (638)
Q Consensus 522 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 598 (638)
+...|..++|.+.|...... .|+ +.+..++...+.+.|+..-|.. ++..+.+.+. -+...|..+...+.+.|+.
T Consensus 694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccch
Confidence 77777777777777777764 343 5566677777777777666666 7777776542 2667777777777777887
Q ss_pred HHHHHHHHHHHh
Q 006614 599 EEAARLMKDMNA 610 (638)
Q Consensus 599 ~~A~~~~~~m~~ 610 (638)
++|.+.|.....
T Consensus 771 ~~Aaecf~aa~q 782 (799)
T KOG4162|consen 771 KQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=5.4e-08 Score=97.72 Aligned_cols=435 Identities=15% Similarity=0.071 Sum_probs=287.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HH
Q 006614 118 RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-AN 196 (638)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 196 (638)
...+..++..|..+.=++...|++..+.+.|++.... +.-....|+.+.-.+..+|.-..|..+.+.-......|+ ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3445568899999999999999999999999987653 455667899999999999999999999988766543343 33
Q ss_pred HHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHCC
Q 006614 197 TYNSMILMLMQ-EGYYEKIHELYNEMCNEGNC---FPDTVTYSALISAFGKL-----------GRDISAIRLFDEMKENG 261 (638)
Q Consensus 197 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g 261 (638)
.+......|.+ -+.+++++++..++...... ......|..+.-+|... ....++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 34433444443 47788888888777662111 12344555555555422 22467888999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
. -|......+.--|+..++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....-.. |-.....
T Consensus 475 ~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 475 P-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred C-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 2 2444444455567788999999999999999876779999999999999999999999999988875211 2222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKAN--GVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~--~~~~~~~~~~~li~~~~~ 419 (638)
-+..-...++.++++.....+...= -+.... ...++ ..........+.-. ...-...++..+......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~-------q~~~~-~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALW--EAEYGV-------QQTLD-EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHH--HhhhhH-------hhhhh-hhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 2333344677777776666554310 000000 00000 00001111111110 011112333332222221
Q ss_pred c---CCHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 420 T---NRVEKAHLLLEEMEEKGFPP--C------PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 420 ~---g~~~~A~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
. -..+.. +....+.| + ...|......+.+.+..++|...+.+..+. .+.....|......+.
T Consensus 623 ~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 623 QLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE 695 (799)
T ss_pred hhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence 1 111111 22111111 1 234566777788888888888888888775 4566777888888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYS--LLRRMEEDGCVPDINSHNIILNGLAKSGGPKR 565 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 565 (638)
..|..++|.+.|......+ |+ +....++...+.+.|+..-|.. ++..+.+.+. .+...|-.+...+.+.|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHH
Confidence 8999999999998887753 54 5678888889999998877777 9999998763 478999999999999999999
Q ss_pred HHHHHHHhhh
Q 006614 566 AMEIFTKMQH 575 (638)
Q Consensus 566 A~~~~~~m~~ 575 (638)
|.+.|+...+
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.2e-11 Score=82.30 Aligned_cols=49 Identities=45% Similarity=0.813 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444443
No 76
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=5.4e-08 Score=98.93 Aligned_cols=476 Identities=13% Similarity=0.067 Sum_probs=261.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCC--------------CHHHHHHHHHHHHcCCCHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVR-------STCVM--------------GPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.|.+.+|+.+..+|...|+......+=+++.. .|+.. ....-..++....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998752222222221 12110 0011122233334445556666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
++...+...... .+... +++-..... .+++-......... .|+..+|..+++.....|+.+.|..++.+|.+
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e----~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE----APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc----CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 666555433211 11111 122222222 23343333333333 28999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+-.+.++|....+. .|.+ ....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq-~~hg~ 300 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQ-LAHGF 300 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccc-hhhhh
Confidence 9998888877777666 7888888999999999999999999988777777755522221 1111 22222
Q ss_pred HHHHHHHHccCCHHHHHHHH------------HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CC-
Q 006614 340 NNLINVLGRAGRLEDALKLF------------NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VL- 404 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~------------~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~--~~- 404 (638)
++-+..-.-.| ..|.+.+ .+..-.|.......|...+.... .|...+. .++-..+...- ..
T Consensus 301 tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~v-eqlvg~l~npt~r~s~ 376 (1088)
T KOG4318|consen 301 TAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEV-EQLVGQLLNPTLRDSG 376 (1088)
T ss_pred hHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchH-HHHHhhhcCCccccCc
Confidence 22222111122 1111111 11111122222233333332222 2222111 22222222110 00
Q ss_pred CCHHHHHHHHHHHHh----------------------cCCHHHHHHHHHHHH------------h----CCC-------C
Q 006614 405 PSPFTYSILIDGFCK----------------------TNRVEKAHLLLEEME------------E----KGF-------P 439 (638)
Q Consensus 405 ~~~~~~~~li~~~~~----------------------~g~~~~A~~~~~~~~------------~----~~~-------~ 439 (638)
.++..|..++.-|.+ .....+..++..... . +.. .
T Consensus 377 ~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 377 QNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAH 456 (1088)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhh
Confidence 111222222221111 111112222211110 0 000 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNA 517 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ 517 (638)
+-...-+.++..|++.-+..++...-+.....-+ ...|..||+-++.....+.|..+.++.... .+..|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 1122344455556665555555544444333211 257889999999999999999999887643 23345566788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEEDGC-VPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
+.+.+.+.+....+..++.++.+.-. .|+ ..++--++++....|+.+.-.++++-+...|+..+ .-++....+.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrk 609 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRK 609 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeec
Confidence 88889999999999999999887421 222 44555677777888999988888888887776542 3344455677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 006614 596 GMFEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++...|.++.+.-... ++|.+.....+.+.+.
T Consensus 610 dd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 610 DDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred cchhhhhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 8888888877766554 5666665555555544
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=5.4e-09 Score=104.14 Aligned_cols=244 Identities=23% Similarity=0.294 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 006614 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGK-----GC-ALTVYT-YTELIKGLGRAGRVEDAYGLFMNMLKE-----GCK 333 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 333 (638)
..+...+...|...|++++|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566888888888888888888777653 21 223332 334677888999999999999998762 221
Q ss_pred -C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 006614 334 -P-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTY 410 (638)
Q Consensus 334 -p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~-~~~ 410 (638)
| -..+++.|...|.+.|++++|...++...+. ++.... -..|.. ..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~~-~~~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLLG-ASHPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhhc-cChHHHHHHH
Confidence 2 2457788888999999999999999887541 111000 001111 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----C---CCc
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEK-----GF--PPCPAAYCSLINGYGKAKRYEAANELFLELKEYC----G---CSS 476 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~ 476 (638)
+.+...++..+++++|..+++...+. |. +.-..+++.+...|...|++++|.++++.+.... . .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 55667788889999998888865432 10 1123456667777777777777777776665421 1 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKK----LRC-KPD-VYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (638)
...++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23345555555555555555555554321 110 111 2344445555555555555555444433
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=7.5e-07 Score=89.96 Aligned_cols=347 Identities=14% Similarity=0.168 Sum_probs=214.9
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHcC
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST--------CVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 173 (638)
.++.+.|.+-.+.+ .+..+|..|++.+.+.++.+-|.-.+..|.... ...+...-..+.....+.
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 35566665544432 256799999999999999998887777664320 011112223344455678
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
|..++|+.+|.+-+.. ..|=..|-..|.+++|+++-+.--+.. =..||......+-..++.+.|++.
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHH
Confidence 9999999999998763 445566777899999999876543322 234666666667777888888887
Q ss_pred HHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 254 FDEMK----------ENG---------LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 254 ~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
|++.- ... -..|...|......+-..|+.+.|+.+|....+ |-++++..|-+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 76432 110 112344455555555667888888888876543 55667777888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH----
Q 006614 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE---- 390 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~---- 390 (638)
|+.++|-++-++- -|...+..+.+.|-..|++.+|..+|.+... +...|+. |+.++..+.
T Consensus 952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRl-cKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRL-CKENDMKDRLANL 1015 (1416)
T ss_pred cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHH-HHhcCHHHHHHHH
Confidence 8888888877653 2667778899999999999999999987643 2222222 222222221
Q ss_pred -----------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHHHH
Q 006614 391 -----------ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE--------MEEK--GFPPCPAAYCSLI 449 (638)
Q Consensus 391 -----------~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li 449 (638)
+..+|++.. . -+...+..|-+.|.+.+|+++--+ ++.. .-..|+...+...
T Consensus 1016 al~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 122222221 1 112234456677777777665322 1222 2234667777777
Q ss_pred HHHHccCCHHHHHHHHHHHHHc----------C----------------CCCc----HHHHHHHHHHHHccCCHHHHHHH
Q 006614 450 NGYGKAKRYEAANELFLELKEY----------C----------------GCSS----ARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~----------~----------------~~~~----~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
+.++...++++|..++....+. + ..|+ ..+...+...|.++|.+..|-+-
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 7778788888877776544321 1 1122 23456677777888887776665
Q ss_pred HH
Q 006614 500 FN 501 (638)
Q Consensus 500 ~~ 501 (638)
|.
T Consensus 1168 fT 1169 (1416)
T KOG3617|consen 1168 FT 1169 (1416)
T ss_pred Hh
Confidence 54
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=2e-06 Score=88.83 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 555 (638)
.+.+|+.+..+-...|...+|++-|-+. .|...|.-++....+.|.+++-..++....+..-+|...+ .|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHH
Confidence 3556777777777777777777666432 3567788888888899999998888888887766776665 5777
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--------------------CCCC
Q 006614 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK--------------------GFEY 615 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p 615 (638)
+|++.++..+-.+++. .||......+.+-|...|.++.|.-+|...... .-.-
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7888777766544432 244444444555555555554444333221100 0112
Q ss_pred CHHhHHHHHHHHhccCCccCCC
Q 006614 616 DQITYSSILEAVGKVDEDRNPT 637 (638)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~a~ 637 (638)
+..||..+-.+|...++++.|+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHH
Confidence 4568999999999888888765
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.3e-07 Score=82.60 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS-MILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 205 (638)
-+++.+..+.+..++.+|++++....+.. +.+...++.+..+|....++..|...|+++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46677777888999999999999887753 447778888999999999999999999999876 455555543 35778
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA--FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 8899999999999988653 332222222222 335788889999999887543 6667777777888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCH--------------
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-------------PDI-------------- 336 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~-------------- 336 (638)
.|.+-|+...+.+---....|+..+ +..+.|+++.|++...+++++|++ ||+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999998875443566777655 455788999999999999987754 121
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 337 -VLINNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 337 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li 414 (638)
..+|.-...+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.- ..+++.+. ..-+.-+.... +-...||..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g-~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEG-FEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcccc-HHHHHHHHhcC-CCChHHHHHHH
Confidence 12333344556778888888887777432 2334556654443211 11222222 22223333322 23456777777
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006614 415 DGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~ 432 (638)
-.||++.-++.|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 778888777777777654
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.3e-08 Score=101.34 Aligned_cols=244 Identities=19% Similarity=0.195 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhC-----CC-CCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCC
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSR-----KC-KPTANT-YNSMILMLMQEGYYEKIHELYNEMCNE-----GNCF 228 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~ 228 (638)
.++..+...|...|++++|..++++.... |. .|.+.+ .+.+...|...+++.+|..+|+++... |...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777665443 11 223332 233556666777777777777766532 2222
Q ss_pred CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC
Q 006614 229 PD-TVTYSALISAFGKLGRDISAIRLFDEMKEN-----GL-QPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGK---GC 297 (638)
Q Consensus 229 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 297 (638)
|. ..+++.|..+|.+.|++++|...++...+. |. .|.+ ..++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 234556666677777776666666554421 11 1111 12444555566666666666666554331 01
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 298 AL----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----C--KP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 298 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
.+ -..+++.|...|.+.|++++|.++|++.+... - .+ ....++.+...|.+.+.+.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~-- 437 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD-- 437 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH--
Confidence 11 13456666666666666666666666655421 1 11 123445555556666666666666655432
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 367 CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 434 (638)
+. .....+.+-...+|..|...|.+.|+++.|.++.+...
T Consensus 438 ---------------------------i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 ---------------------------IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ---------------------------HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11111112234678888888888888888888887765
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=2.7e-09 Score=95.81 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=163.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
+.+-+.|++.|-+.++ ++.++.-.+. .|-+.||..|-..|.+..+.+.|+.++.+-.+. +|-++....-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~A-ekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRA-EKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhh-HHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 4455566666666555 4444444443 455667777778888888888888888877765 25555555566677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006614 455 AKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.++.++|.++++...+. .+.++.....+...|.-.++++-|++++.++.+.|+ -+...|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 78888888888887775 445666666777777778888888888888888875 3666777777788888888888888
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 535 LRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 535 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|.+.+..--.|+ ...|-.+.......||+.-|.+.|+-....+- -+...++.+.-.-.+.|+.++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 888776543344 44566667777788888888888888776432 2456778777777788888888888887764
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=4.6e-08 Score=93.67 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+..++.+.|++++|...|++.++.. +.++..|+.+...+...|++++|...|++..+..+. +..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777778888888888888888887753 456778888888888888888888888888776433 56677778888
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|++.|+...+..+ +......+.......++.++|.+.|++..... .|+...+ .+... ..|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P---~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDP---NDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCH
Confidence 8888888888888888887654 22222222223345677888888886655432 2232221 22222 3344433
Q ss_pred HHHHHHHHHhC---CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006614 285 ALGLVQEMKGK---GCA---LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 285 A~~~~~~m~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+ +.++.+.+. .+. .....|..+...+.+.|++++|...|++..+.++
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3 233333321 110 1234566777777777777777777777776543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=4.2e-08 Score=84.31 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=118.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...+.-.|.+.|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++.++..+ .+....|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHHH
Confidence 344455566666666666666666665322 455666666666666666666666666666554 45555666666666
Q ss_pred ccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQ-PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (638)
..|++++|.+.|++......- --..+|..+.-+..+.|+.+.|.+.|++.++.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 666666666666666654211 12445666666666666666666666666665443 3445555566666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 322 GLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 322 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+++.....+. ++..+.-..|..-...|+.+.+.+.=..+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666554 5666666666666666666665555444433
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=7.7e-07 Score=91.96 Aligned_cols=494 Identities=10% Similarity=0.008 Sum_probs=267.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
..|+..|-.+.+.. +.=...|..|...|....+...|.+.|+...+.+ ..+..........|++..+++.|..+.-.
T Consensus 475 ~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34444444444333 1123577778888877777788888888887653 45667778888999999999999988544
Q ss_pred hhhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 186 IKSRKC-KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 186 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
..+... ..-...|..+.-.|.+.+++..|+..|+...+..+ .|...|..++.+|...|++..|+++|.+.... .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 433311 11222344455667788999999999999999876 78899999999999999999999999988774 34
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------c
Q 006614 265 TA-KIYTTLVSIYFKLGEVEKALGLVQEMKGKG------CALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-------E 330 (638)
Q Consensus 265 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 330 (638)
+. ..---..-.-+..|.+.+|+..+....... ..--..++..+...+...|-...|..+++..++ +
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 32 222223445567899999999888876431 111122333333333344444444444444332 2
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCCCH
Q 006614 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP---ASEASAWFEKMKANGVLPSP 407 (638)
Q Consensus 331 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~m~~~~~~~~~ 407 (638)
...-+...|-.+. .|..+|-... .. .|+......+....-..+.. +-.....-..........+.
T Consensus 708 ~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~ 775 (1238)
T KOG1127|consen 708 SLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHM 775 (1238)
T ss_pred hhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhcc
Confidence 1111222222222 2222332222 00 12222222222111111111 00000000000000111123
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006614 408 FTYSILIDGFCK--------TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 408 ~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
.+|..++..|.+ ..+...|+..+++.++.. ..+..+|+.|.-. ...|++.-|...|-+.... .+.+..+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhh
Confidence 344444443333 122346777777776653 4556666666554 5556777777766665543 3345566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH--HHH--CCCCCCHHHHHHHHH
Q 006614 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRR--MEE--DGCVPDINSHNIILN 555 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~--~~~~p~~~~~~~l~~ 555 (638)
|..+.-.+.+..+++-|...|...+... +.|...|-.........|+.-++..+|.. ... .|-.|+..-|-....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 7667777777788888888888777653 33455555444444566776666666654 111 233344333333333
Q ss_pred HHHhcCChHHHHHHHHHhhh---------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHhHHH
Q 006614 556 GLAKSGGPKRAMEIFTKMQH---------SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFEYDQITYSS 622 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ 622 (638)
.-...|+.++-+...+++.. .+..-+...|.+.....-+.+.+.+|.++..+... ...+-|..+|+.
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444554443333333221 12222345666666666666777777666665442 112344445553
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=4.8e-08 Score=83.94 Aligned_cols=208 Identities=18% Similarity=0.061 Sum_probs=174.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
+...+.-.|.+.|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+-|++.... .+.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHH
Confidence 34556778999999999999999999987 778889999999999999999999999999986 4567788899999999
Q ss_pred ccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRC-KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..|++++|...|++....-. .--..||..+.-+..+.|+.+.|.+.|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999887521 11256788888888899999999999999998742 24567778889999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSS 622 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 622 (638)
.+++.....+. ++..+.-..|+.-.+.|+.+.|.++=..+.+. -|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99999988654 88988888899889999999998877776643 455444433
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=4e-08 Score=94.07 Aligned_cols=233 Identities=15% Similarity=0.056 Sum_probs=166.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-C--CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTC-V--MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
+......+..+.++..+.+++.... . -....|......+.+.|+.++|...|.+..+..+. +...|+.+...+...
T Consensus 33 ~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 33 AVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQA 111 (296)
T ss_pred ccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 3344455667788888888775421 1 22456888888999999999999999999988543 789999999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL 288 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 288 (638)
|++++|.+.|++..+..+ .+..+|..+...+...|++++|.+.|+...+.. |+..............++.++|.+.
T Consensus 112 g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999998775 567788889999999999999999999999863 4433222223334567889999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 289 VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---GCK---PDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 289 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
+.+..... .|+...+ .+ .....|+..++ ..+..+.+. .+. ....+|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97765432 2232222 22 23345555444 344444432 111 13457889999999999999999999999
Q ss_pred HHCCCCCChhhHH
Q 006614 363 EALQCKPNVVTYN 375 (638)
Q Consensus 363 ~~~~~~p~~~~~~ 375 (638)
...++ |+.+.+.
T Consensus 263 l~~~~-~~~~e~~ 274 (296)
T PRK11189 263 LANNV-YNFVEHR 274 (296)
T ss_pred HHhCC-chHHHHH
Confidence 87552 3444443
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5.9e-06 Score=77.27 Aligned_cols=302 Identities=14% Similarity=0.049 Sum_probs=189.2
Q ss_pred CCHHHHHHHHHHHHc--cCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 229 PDTVTYSALISAFGK--LGRDISAIRLFDEMKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
|...+...++.+++. .++...|.+.+-.+... -++-|+.....+...+...|+.++|+..|++..-.++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 444555566665554 35555555555444433 24557778888999999999999999999888765321 222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHHHhc
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI-KSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~ 384 (638)
...-.+.+.|+++....+...+....-. ....|-.-.......+++..|+.+-++.++.+ |+.+.-..+- ..+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhc
Confidence 3344456778888777777776654211 22233333445556788888888888877643 3333332332 334445
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-ccCCHHHHH
Q 006614 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI-NGYG-KAKRYEAAN 462 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~ 462 (638)
+++.++ ...|+....-. +.+...|.-++.+|...|++.+|..+-++..+. ++.+..+.+.+. ..+. ...--++|.
T Consensus 348 ~R~~~A-~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQA-VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHH-HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 555555 44455544331 346778888888888888888888777766554 244555555553 2222 222346777
Q ss_pred HHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 463 ELFLELKEYCGCSS-ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 463 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
++++...+. .|+ ....+.+...+...|..++++.++++.... .||....+.|.+.+.....+.+|++.|..++..
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777776663 232 344566667777778888888888777663 577777777777777777888888877777764
No 89
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.12 E-value=1.1e-05 Score=78.10 Aligned_cols=439 Identities=12% Similarity=0.127 Sum_probs=225.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+-|..+|+.|++-+..+ -++++.+.+++++.- .+..++.|..-|..-.+.++++..+.+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 56889999999888776 899999999999874 4567788999999999999999999999998776 3467777766
Q ss_pred HHHHHh-cCCHhH----HHHHHHHHHh-CCCCCCCHHHHHHHHHHH---------HccCChHHHHHHHHHHHHCCCCCCH
Q 006614 202 ILMLMQ-EGYYEK----IHELYNEMCN-EGNCFPDTVTYSALISAF---------GKLGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~~~-~g~~~~----A~~~~~~~~~-~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+.---+ .|+... -..-|+-... .|........|+..+..+ ....+++...+++.++....
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP----- 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP----- 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-----
Confidence 643222 222222 2222332222 221111222233333221 11223333444444444321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLIN 344 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~li~ 344 (638)
.+++++-.+-|....+. .|..|-..++ --+...+..|.++++++.. +|...+..+
T Consensus 168 ------------m~nlEkLW~DY~~fE~~---IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~------ 224 (656)
T KOG1914|consen 168 ------------MHNLEKLWKDYEAFEQE---INIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPA------ 224 (656)
T ss_pred ------------cccHHHHHHHHHHHHHH---HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCC------
Confidence 12222222222222211 1222222222 1233445566666666543 222111111
Q ss_pred HHHccCCHH--HHHHHHHHHHH----CCCC-CC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHH
Q 006614 345 VLGRAGRLE--DALKLFNKMEA----LQCK-PN--------VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT 409 (638)
Q Consensus 345 ~~~~~g~~~--~A~~~~~~~~~----~~~~-p~--------~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~ 409 (638)
.-..|-.+ ...+++....+ .+.. -+ ..+|+..+..+. ...+.-.....-+..
T Consensus 225 -vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~---~~peiWy~~s~yl~~--------- 291 (656)
T KOG1914|consen 225 -VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLG---YHPEIWYDYSMYLIE--------- 291 (656)
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH---------
Confidence 00001111 11111111111 1111 00 001111111100 000000000000000
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCcHHH
Q 006614 410 YSILIDGFCKTNR-------VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK---RYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 410 ~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
.-+.+...|+ -+++..+++...+.-...+.-+|..+.+.--..- +.+.....++++...-...-..+
T Consensus 292 ---~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv 368 (656)
T KOG1914|consen 292 ---ISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV 368 (656)
T ss_pred ---hhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee
Confidence 0011222222 3455555555544322233344444433222111 35566666666665444444556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
|...++.--+..-++.|..+|.+..+.+..+ ++..+++++.-+| .++.+-|.++|+--+++ ..-+..--...+.-+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 7777777777777888888888888776666 6677777777655 57778888888766554 1223333455677777
Q ss_pred hcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 559 KSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..++-..|..+|++....++.|+ ..+|..++.-=+.-|+.+.+.++-+++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888888887755554 46788888888888888888888777664
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=7.3e-07 Score=88.87 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=81.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG----KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYF 277 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 277 (638)
..+...|++++|.+.+++.....+ .|...+.. ...+. ..+..+.+.+.++.. .+..| .......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 334455666666666666665443 23333321 11111 223334444444331 11122 2233344555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHccCCHHH
Q 006614 278 KLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PDI--VLINNLINVLGRAGRLED 354 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~--~~~~~li~~~~~~g~~~~ 354 (638)
..|++++|.+.+++..+..+. +...+..+...+...|++++|...+++....... |+. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 667777777777666665433 4555666666666777777777776666654221 222 234456666667777777
Q ss_pred HHHHHHHHHH
Q 006614 355 ALKLFNKMEA 364 (638)
Q Consensus 355 A~~~~~~~~~ 364 (638)
|..++++...
T Consensus 205 A~~~~~~~~~ 214 (355)
T cd05804 205 ALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHhc
Confidence 7777776643
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.8e-05 Score=80.80 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGV 143 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~ 143 (638)
..++.+||++.++|...++-.+
T Consensus 869 ~~d~a~hnAlaKIyIDSNNnPE 890 (1666)
T KOG0985|consen 869 SQDPATHNALAKIYIDSNNNPE 890 (1666)
T ss_pred CcchHHHhhhhheeecCCCChH
Confidence 4688999999999987665543
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=5.2e-07 Score=80.37 Aligned_cols=417 Identities=12% Similarity=0.084 Sum_probs=236.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH-HHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA-LISA 240 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~ 240 (638)
-+.+++..+.+..++++|++++..-.++..+ +......+...|....++..|-+-|+++.... |...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 3566677778889999999999888887433 77778888899999999999999999998754 55555543 3566
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV--SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+.+.+.+.+|+++...|.+. |+...-..-+ ......+++..+..++++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999888763 2222222222 23345788888888888877543 4455555555667999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHH-----HHHHHHhcCChHHHHH
Q 006614 319 DAYGLFMNMLKE-GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT-----VIKSLFESKAPASEAS 392 (638)
Q Consensus 319 ~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-----ll~~~~~~~~~~~~~~ 392 (638)
+|.+-|+...+- |.. ....|+..+.. .+.|+++.|++...++.++|++-.+. +++ .+. .-..|+..
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiD-vrsvgNt~---- 233 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGID-VRSVGNTL---- 233 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCc-hhcccchH----
Confidence 999999999885 555 56677765544 56789999999999999887652111 000 000 00001110
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 393 AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK-GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 393 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
.|..++ -...+|.-...+.+.|+++.|.+.+-.|--+ ....|+.|...+.-.- -.+++.+..+-+.-+...
T Consensus 234 ----~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 ----VLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred ----HHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000000 1223444445566777777777766666422 1234555555443221 123344444444444444
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCHHH
Q 006614 472 CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC-KPDVYTYNALMSGMV-RAGMIDDAYSLLRRMEEDGCVPDINS 549 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~ 549 (638)
.. -...++..++-.||+..-++-|-.++.+-..... -.+...|+. +.++. ..-..++|.+-++.+... +.-....
T Consensus 306 nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRk 382 (459)
T KOG4340|consen 306 NP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRK 382 (459)
T ss_pred CC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 22 3455666666677777777777666655332211 123344443 23332 233445554444433321 0000000
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 550 HNIILNGLAKSGG---PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 550 ~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
..+-+.--....+ ...|++-+++..+.- ....-+-.+.+++..++..+.++|..-.+.
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 1111111111111 112222223222210 112233445678888999999998887754
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.6e-06 Score=79.82 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=72.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCH
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYY 211 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 211 (638)
++....|+++.|+.+|.+.+... +++...|+.-..+|+..|++++|++--.+-.+. .|+ ...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 44566778888888887776653 446666777777788888888877766665554 333 34677777777777888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
++|+.-|.+-++..+ .+...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d~--~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP--SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcCC--chHHHHHhHHHhh
Confidence 888888887777654 4566666666666
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=3.7e-06 Score=83.85 Aligned_cols=201 Identities=11% Similarity=-0.028 Sum_probs=134.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGPS-VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|+.+++.+.+....+... ..+.. ........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 355677777777777888887666666554321 22322 2223344556788999999999998876332 4444442
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 202 ILMLMQ----EGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
...+.. .+..+.+.+.++...... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPEN---PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 223332 344555555554421211 33 3445566678888999999999999998864 34567788889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 277 FKLGEVEKALGLVQEMKGKGCA-LT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...|++++|...+++....... ++ ...|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999999888765332 22 234557788899999999999999998654
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.3e-06 Score=79.54 Aligned_cols=383 Identities=13% Similarity=0.045 Sum_probs=221.0
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.++.+.|+..|.-+.... ++|.+.|..-..+|+..|+|++|.+--.+..+. .|+ +..|+....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 367889999999887666 668999999999999999999998877777663 344 568999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHHHhCCCC--CCCHHHHHHHHHHHHcc----------C
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI---HELYNEMCNEGNC--FPDTVTYSALISAFGKL----------G 245 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------g 245 (638)
.-|.+-++.... +...++-+..++.......+. -.++..+...... ......|..++..+-+. .
T Consensus 91 ~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 999999887433 666777777777211100000 0011111100000 00011122222221110 0
Q ss_pred ChHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 246 RDISAIRLFDE-----MKENG-------LQP------------T----------AKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 246 ~~~~A~~~~~~-----m~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++..|.-.+.. +...| ..| | ..-...+.+...+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111100 00000 011 0 11234566667777778888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHccCCHHHHHHHHHHHHH
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-------NLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..+.. -+...++....+|...|.+.++....+...+.|.. ...-|+ .+..+|.+.++++.+...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 77665 35566666777788888888777777776665533 222222 233355666777888888877655
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
....|+..+-..-.. ++ ....+.. .-+.|.. .-...-...+.+.|++..|+..|.+++... |.|..
T Consensus 327 e~Rt~~~ls~lk~~E---------k~-~k~~e~~--a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAE---------KA-LKEAERK--AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hhcCHHHHHHHHHHH---------HH-HHHHHHH--HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 443433322211111 11 1111111 1112221 111122455677788888888888877776 67777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.|+...-+|.+.|.+..|++-.+...+. .++....|.-=..++....++++|++.|.+..+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777888777777776666664 2333444444445555556677777777766664
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=1e-05 Score=91.52 Aligned_cols=370 Identities=12% Similarity=0.024 Sum_probs=193.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDT--VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
....+...|++.+|...+..... .+. .........+...|+++.+...++.+.......+..........+..
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d-----~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGD-----AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCC-----HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 34445556666666554433311 111 11112223344456666666665554221111122223334444556
Q ss_pred cCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGC------ALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI----VLINNLINVL 346 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~ 346 (638)
.|++++|...+......-. .+. ......+...+...|++++|...+++..+.-...+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 6777777766665543200 011 111122233445677777777777766553111121 2334455556
Q ss_pred HccCCHHHHHHHHHHHHHCCCC---C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCC--C-CHHHHHHHH
Q 006614 347 GRAGRLEDALKLFNKMEALQCK---P--NVVTYNTVIKSLFESKAPASEASAWFEKMKA----NGVL--P-SPFTYSILI 414 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~----~~~~--~-~~~~~~~li 414 (638)
...|++++|...+++.....-. + .......+...+...|+..++ ...+++... .+.. + ....+..+.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA-YETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 6677777777776666432110 1 112233334445556666555 443333222 2211 1 123344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHH-----HHHH
Q 006614 415 DGFCKTNRVEKAHLLLEEMEEKG--FPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVY-----AVMI 484 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~li 484 (638)
..+...|++++|...+.+..... ..+ ....+..+...+...|+.++|.+.+........... ...+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 66677789998888888765421 111 233444566677788889888888887754211110 0101 1122
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 006614 485 KHFGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD-INSHNIILNG 556 (638)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~ 556 (638)
..+...|+.+.|...+............ ..+..+..++...|++++|...+++.... |..++ ..+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3445578888888887765442211111 11345666777888999998888887753 22222 3456666777
Q ss_pred HHhcCChHHHHHHHHHhhhC
Q 006614 557 LAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~ 576 (638)
+...|+.++|...+.+..+.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88889999999998888763
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=1.9e-05 Score=72.11 Aligned_cols=331 Identities=12% Similarity=0.044 Sum_probs=207.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH-HHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY-NSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 201 (638)
.++.-...+-+.+..+|++.+|+.-|...++.+ +.+-.++..-...|...|+..-|+.-+.++.+. +||-..- ..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 345556677888889999999999999887632 222234445566788889999999999998887 5665432 334
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+.++|++++|..-|+.+++..+ +..+ ...+..+.--.++-+.+ ...+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~---s~~~---~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEP---SNGL---VLEAQSKLALIQEHWVL----------------VQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCC---Ccch---hHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCc
Confidence 5678899999999999999998764 2211 11111111111222222 223344556788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
...|+.....+++..+- |...|..-..+|...|++..|+.-++...+..- -+..++-.+...+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888888876543 777788888889999999988887777666532 3667777778888888999998888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006614 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 362 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (638)
..+.+ ||....-..-..+-+ +.+.++.| ......++|.++++-.+...+......
T Consensus 249 CLKld--pdHK~Cf~~YKklkK-------v~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKK-------VVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHccC--cchhhHHHHHHHHHH-------HHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 87744 665433221111100 01111111 123345666666666666665532212
Q ss_pred HH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 442 PA---AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 442 ~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.. .+..+-.++...+++.+|++.-.++... .+.|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22 2333444455566677777666666653 2334666666666666666667777666666654
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.5e-05 Score=90.34 Aligned_cols=372 Identities=12% Similarity=-0.038 Sum_probs=224.9
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++.+|........... .-..............|+++.+...++.+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344555666666655443321110 001112223344556788888888777653221111222233444556688999
Q ss_pred HHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcC
Q 006614 318 EDAYGLFMNMLKEGC------KPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV----VTYNTVIKSLFESK 385 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~------~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~ 385 (638)
++|...+......-. .+. ......+...+...|++++|...++.........+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999999988765311 111 122233445667899999999999988663211121 23344445556678
Q ss_pred ChHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC---CHHHHHHHHHHHH
Q 006614 386 APASEASAWFEKMKAN----GVL-PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK----GFPP---CPAAYCSLINGYG 453 (638)
Q Consensus 386 ~~~~~~~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~ 453 (638)
+..++ ...+++.... |.. ....++..+...+...|+++.|...+++.... +... ....+..+...+.
T Consensus 506 ~~~~A-~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 506 ELARA-LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CHHHH-HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 87776 5555555432 211 11234455667788999999999998886542 2111 2234555666777
Q ss_pred ccCCHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHH
Q 006614 454 KAKRYEAANELFLELKEY----CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK-PDVYTY-----NALMSGMV 523 (638)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~~ 523 (638)
..|++++|...+.+.... +.......+..+...+...|++++|...+++.....-. .....+ ...+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 889999999999887653 11112344555667788899999999999887543111 111111 11224445
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHcc
Q 006614 524 RAGMIDDAYSLLRRMEEDGCVPDI---NSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD-AVSYNTILGCLSRA 595 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~ 595 (638)
..|+.+.|...+............ ..+..+...+...|++++|...+++.... |..++ ..+...+..++.+.
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 688999999998776543211111 12345677788999999999999998752 33222 34566777889999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006614 596 GMFEEAARLMKDMNAKG 612 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~ 612 (638)
|+.++|.+.+.+..+..
T Consensus 745 G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 745 GRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988753
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=3.1e-05 Score=80.62 Aligned_cols=469 Identities=10% Similarity=0.009 Sum_probs=253.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 220 (638)
...+...|-+.++.. +.-...|..+...|....+...|.+.|.+.-+.... +...+-...+.|++...++.|.++.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444432 112245666666676666777777888777666432 666777777888888888888777433
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006614 221 MCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.-+..+...-...|-...-.|...++...|..-|+...+.. +-|...|..+..+|...|++..|.++|.+....++ +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP--~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP--L 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc--H
Confidence 33322111111223334445566777777777777777653 33677788888888888888888888877766532 2
Q ss_pred HHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------C
Q 006614 301 VYTYTE--LIKGLGRAGRVEDAYGLFMNMLKEG------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEA-------L 365 (638)
Q Consensus 301 ~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 365 (638)
.+|.. ..-..+..|.+.+|+..+...+... -.--..++-.+...+.-.|-..+|..++++-.+ .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22222 2233566788888887777766431 111122333333333333444444444443322 1
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCC
Q 006614 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV---E---KAHLLLEEMEEKGFP 439 (638)
Q Consensus 366 ~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~ 439 (638)
....+...|-.+-.+ -..|-+.. .. .|+.....++..-.-..+.. | -+.+.+-.-.+. .
T Consensus 708 ~~~~~~~~Wi~asda-----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~ 772 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDA-----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--A 772 (1238)
T ss_pred hhhhhHHHHHHHhHH-----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--h
Confidence 111122222211111 11122222 11 22322222222212222221 1 111111111111 1
Q ss_pred CCHHHHHHHHHHHHc-------cC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006614 440 PCPAAYCSLINGYGK-------AK-RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD 511 (638)
Q Consensus 440 ~~~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 511 (638)
.++.+|..++..|.+ .+ +...|...+....+. ...+..+|+.|.-. ...|.+.-|...|-+-.... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 223444444433332 22 334677888777765 34566777777655 56677777777776555442 456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh----hCCCCCCHHHHHH
Q 006614 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ----HSEIKPDAVSYNT 587 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~ 587 (638)
..+|..+.-.+.+..+++.|...|...+... +.|...|..........|+.-++..+|..-. ..|--|+...|-+
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 7788888888899999999999999988863 2356777666666667888888888888722 1344566666666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC---------CCCCCHHhHHHHHHHHhccCCcc
Q 006614 588 ILGCLSRAGMFEEAARLMKDMNAK---------GFEYDQITYSSILEAVGKVDEDR 634 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~~---------~~~p~~~~~~~l~~~~~~~g~~~ 634 (638)
...-....|+.++-+...+++-.. +.+-+...|........+.++++
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 555566777776655544433221 23333445555555444444443
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=9.8e-06 Score=81.16 Aligned_cols=266 Identities=19% Similarity=0.218 Sum_probs=162.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
.+.+......|.+|+.+++.+..... -...|..+.+.|...|+++-|.++|-+. ..++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 45566677888889888888876643 3456777888899999999999988653 245677889999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
++.|.++-.+... .......|-.-..-+-..|+..++ ++++-.+ | .|+ ..|..|-+.|..+..+++.+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~ea-eqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEA-EQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhh-hheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 9999988877643 333444554444445555555554 3332211 1 233 24677888888888777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH--------
Q 006614 432 EMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM-------- 503 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 503 (638)
+-.. ..-..|...+..-+-..|++..|...|-+... |..-+++|-..+-+++|.++-+.-
T Consensus 875 k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 875 KHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred HhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 5432 12234566677778888999998888776544 455566676777777766654321
Q ss_pred ------HhCCCCCCHHHH------HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 504 ------KKLRCKPDVYTY------NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 504 ------~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+..|-..-+... ..-++..+..+.++-|.++-+-..+.. .|.+ ...+...+-..|++++|.+.+-
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhH
Confidence 111100001111 112223344555566666555444432 1222 2234455678899999988877
Q ss_pred Hhhh
Q 006614 572 KMQH 575 (638)
Q Consensus 572 ~m~~ 575 (638)
+.++
T Consensus 1020 eaik 1023 (1636)
T KOG3616|consen 1020 EAIK 1023 (1636)
T ss_pred HHhh
Confidence 7765
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=1.8e-07 Score=88.17 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--c--C
Q 006614 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR--A--G 526 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~--g 526 (638)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..+++. . .
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344445555554444321 233444445555555555555555555555432 22 222223333221 1 2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHH
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLM 605 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 605 (638)
.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+....+. -++.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555555443 334555555555555555555555555555543321 1344444555555555554 4444555
Q ss_pred HHHH
Q 006614 606 KDMN 609 (638)
Q Consensus 606 ~~m~ 609 (638)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.7e-07 Score=88.37 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=125.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+.-.|++..++.-.+ ...............+.+++...|+++.++ .++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566665554444 111111112334445556666666655433 3333322 44555554444443333444555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+.-+++.........+..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444333221122222233334455667777777766432 3556666667777777777777777777776
Q ss_pred CCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006614 295 KGCALTVYTYTELIKG----LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 295 ~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
.+ .|. +...+..+ ....+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 53 232 22223332 22334577777777776554 4456777777777777777777777777776543322 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006614 371 VVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~ 400 (638)
..+...++-.....|+..+.+.+++.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 334444444445555554444555555554
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=0.00011 Score=67.43 Aligned_cols=316 Identities=13% Similarity=0.117 Sum_probs=170.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI-YTTL 272 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 272 (638)
++.-..-+...+...|++.+|+..|...++-++ .+-.++..-...|...|+...|+.=++...+. +||-.. -..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344444556666667777777777777766332 22233333445566667777777777666663 455322 1223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--H------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALT--V------------YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~--~------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
...+.+.|.++.|..-|+..++..+.-. . ......+..+...|+...|+.....+++..+- |...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 3456677777777777777776543211 0 11112234455566666777666666665332 5555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~ 418 (638)
+..-..+|...|++..|..=++...+.... +..++.-+-..++..|+.......+ ++-.+ +.||.... |.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~i-RECLK--ldpdHK~C------f~ 261 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEI-RECLK--LDPDHKLC------FP 261 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHH-HHHHc--cCcchhhH------HH
Confidence 666666666777766666555554433211 2222323333334444433331111 11111 12222111 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHccCCHHH
Q 006614 419 KTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA---RVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 419 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 495 (638)
.-..+.+..+.++.|. .....+++.++.+-.+...+....... ..+..+-.++...|++.+
T Consensus 262 ~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 1111122222222221 223455666677777776665433222 233445566777788889
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 006614 496 AVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (638)
|++.-.+..+. .|| +.++.--..+|.-..+++.|+.-|+.+.+..
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 99888888774 354 7777777888888888999999998888753
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.2e-06 Score=85.54 Aligned_cols=218 Identities=15% Similarity=0.075 Sum_probs=120.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
.-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+.++..+. |..+...|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3456788888888888888877655 7778888888888888888888888888877554 6777888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH-----------HHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 354 DALKLFNKMEALQCKPNVVTYNTVIKS-----------LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 354 ~A~~~~~~~~~~~~~p~~~~~~~ll~~-----------~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 422 (638)
.|++.++.......+ |..+..+ +............+++.....+..+|+.....|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888877553311 0000000 000000011112222233333333444444444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+++|...|+..+... |.|...|+.|...++...+.++|+..|.++++. .|+ +++.--|.-.|...|.+++|...|-
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 555555555555443 444445555555555555555555555555442 121 2222233333444444444444443
No 105
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=6.5e-06 Score=78.73 Aligned_cols=215 Identities=9% Similarity=0.034 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
++..+-.++...++.++|+.+..+++... +-+..+|+....++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 33344444555667777777777777642 334445655555566666 567888888887776544 556677666556
Q ss_pred HhcCCH--hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 006614 206 MQEGYY--EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---G 280 (638)
Q Consensus 206 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g 280 (638)
.+.|+. ++++++++++.+..+ .+..+|+...-.+...|+++++++.++++++.+. -|..+|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 566653 667788878877665 5777777777777777888888888888887653 3666676666555444 2
Q ss_pred C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006614 281 E----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 281 ~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 348 (638)
. .++.++...+++...+. |...|+-+...+... +...+|.+.+.+..+.++. +......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 24566666666666544 666676666666552 3445677777776665433 66677777777775
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=1.9e-06 Score=76.09 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=133.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
.+..+...... .+-|..+ ....+.+...|+-+.+..+..+..... .-+....+..+....+.|++.+|+..|.+..
T Consensus 52 a~~al~~~~~~--~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLR--NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhc--CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 44444444443 2334455 666777777888888887777765543 2366667778888888999999999999988
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+ +|...|+.+.-+|.+.|++++|..-|.+..+.- .-+....|.+.-.+.-.|+.+.|..++......+.. |..
T Consensus 128 ~l~p--~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~ 203 (257)
T COG5010 128 RLAP--TDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSR 203 (257)
T ss_pred ccCC--CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chH
Confidence 8765 888899999999999999999998888888752 336677788888888888999998888888776544 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.-..+.......|++++|..+-..-.
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccc
Confidence 66777778888888888888765544
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=0.00036 Score=71.39 Aligned_cols=209 Identities=13% Similarity=0.164 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..|.-...-+-..|+.+.|+.+|..... |.++++..|-.|+.++|-++-++- -|......|.+.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARM 976 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHH
Confidence 3344344444456666666666665533 445555556666666666554432 144455555566
Q ss_pred HHhcCCHHHHHHHHHHHHh----------CCCCCCHHHH-------------------------HHHHHHHHhcCCHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKG----------KGCALTVYTY-------------------------TELIKGLGRAGRVEDA 320 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~-------------------------~~li~~~~~~g~~~~A 320 (638)
|-..|++.+|..+|.+... .+.. ...+ ...+..|-+.|.+.+|
T Consensus 977 YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kA 1054 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKA 1054 (1416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHH
Confidence 6666666666555544321 1110 0011 1122334455555555
Q ss_pred HHHHHH--------HHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 006614 321 YGLFMN--------MLKE--GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 321 ~~~~~~--------~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
+++--+ ++.. ....|....+.-.+.++...++++|..++-...+ |...+.. |..++..-.
T Consensus 1055 LelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vt 1124 (1416)
T KOG3617|consen 1055 LELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVT 1124 (1416)
T ss_pred HHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchh
Confidence 543211 1111 2223556666667777777777877777765544 2222322 333332211
Q ss_pred HHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 391 ASAWFEKMKA-NGVLPSP----FTYSILIDGFCKTNRVEKAHLLLEEM 433 (638)
Q Consensus 391 ~~~~~~~m~~-~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 433 (638)
+++-+.|.- ..-.|+. .....+...|.+.|.+..|-+-|.+.
T Consensus 1125 -ee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1125 -EEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred -HHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 333333332 1123443 34556677888889888887776554
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=2e-05 Score=79.07 Aligned_cols=136 Identities=16% Similarity=0.235 Sum_probs=69.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 423 (638)
.+......+.+|+.+++.+.+... -..-|..+..-|...|+..-+ +++|.+. ..++-.|..|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a-e~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA-EELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH-HHHHHhc---------chhHHHHHHHhccccH
Confidence 344455666666666666655331 122233333334444443333 4443221 1244456667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+.|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..++.+++.++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 77776665543 2233445555555556666666666666544322 22 234556666666666655554
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.69 E-value=0.00044 Score=67.55 Aligned_cols=414 Identities=12% Similarity=0.101 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 192 KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 192 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
+-|..+|+.||+-+-.. .++++.+.|+++...-+ -....|..-+..-.+..+++....+|.+-...- .+...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 45888999888866555 88999999999988664 466778888888888899999999998877653 45666766
Q ss_pred HHHHHHh-cCCHHH----HHHHHHHHHh-CCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHcCCCCC
Q 006614 272 LVSIYFK-LGEVEK----ALGLVQEMKG-KGCAL-TVYTYTELIKG---------LGRAGRVEDAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 272 li~~~~~-~g~~~~----A~~~~~~m~~-~~~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~~~~p~ 335 (638)
.++--.+ .|+... ..+.|+-..+ .|..+ +...|+..+.- +..+.+++...++|.+++..-.. +
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-N 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-c
Confidence 6654433 233222 2233333332 23322 22234444332 23334555666777777654222 2
Q ss_pred H-HHHHHHHH------HH-------HccCCHHHHHHHHHHHHH--CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 336 I-VLINNLIN------VL-------GRAGRLEDALKLFNKMEA--LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 336 ~-~~~~~li~------~~-------~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
. ..|+.... .. -+..++-.|.++++++.. .|...+..+. -.........++
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v--------p~~~T~~e~~qv----- 237 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV--------PPKGTKDEIQQV----- 237 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC--------CCCCChHHHHHH-----
Confidence 2 12221110 00 011223334444443321 1221111110 000000000000
Q ss_pred hCCCCCCHHHHHHHHHHHHhc------CCH--HHHHHHHHHH-HhCCCCCCHHH-HH----HHHHHHHccCC-------H
Q 006614 400 ANGVLPSPFTYSILIDGFCKT------NRV--EKAHLLLEEM-EEKGFPPCPAA-YC----SLINGYGKAKR-------Y 458 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~------g~~--~~A~~~~~~~-~~~~~~~~~~~-~~----~li~~~~~~g~-------~ 458 (638)
..|..+|.-=-.+ |.. ....-.+++. .-.+..|+... +. ..-+.+...|+ .
T Consensus 238 --------~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 238 --------ELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred --------HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 0011111100000 000 0011111111 11111221110 00 01112222333 4
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
+++..+++.....-..-+..+|..+.+.--..- ..+.....++++...-...-..+|..++....+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 566666666655433334444444443222222 35666677777765432223456777888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 536 RRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFE 614 (638)
Q Consensus 536 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 614 (638)
.++.+.+..+ ++..+++++.-+|. ++.+.|.++|+--..+ ..-++..-...++-+.+.++-+.|..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999988777 67788888887765 6888999999986653 2223444557888889999999999999999988777
Q ss_pred CCH--HhHHHHHHHHhccCCcc
Q 006614 615 YDQ--ITYSSILEAVGKVDEDR 634 (638)
Q Consensus 615 p~~--~~~~~l~~~~~~~g~~~ 634 (638)
||. .+|..+++-=...|++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHH
Confidence 665 48999988777777654
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.5e-08 Score=59.28 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 111
>PLN02789 farnesyltranstransferase
Probab=98.66 E-value=3.1e-05 Score=74.09 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=157.4
Q ss_pred HHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 006614 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETR-MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
+..++......+.|+.....+.... +.+..+|+..-.++...| .+++++..++.+++.+ +-+..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 4455555666778888888776544 446678888888888888 6799999999988753 44556677665556666
Q ss_pred CCH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CCh-
Q 006614 174 KMV--NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRD- 247 (638)
Q Consensus 174 g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 247 (638)
|+. ++++.+++++.+...+ |..+|+...-++...|+++++++.++++++.++ .|...|+.....+.+. |+.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhcccccccc
Confidence 653 6789999899887654 889999999999999999999999999999876 6777777766665554 333
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 248 ---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 248 ---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
+++++...+++... +-|...|+.+...+... ++..+|.+.+.+..+.++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 46777777777753 44788899888888773 3456788888887775543 67778888888875
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=4.2e-08 Score=58.28 Aligned_cols=32 Identities=38% Similarity=0.820 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 542 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.65 E-value=0.001 Score=69.17 Aligned_cols=222 Identities=11% Similarity=0.115 Sum_probs=139.3
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIR--CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++...|++-.....++. +.. .|...+. .+.+.|..++|..+++..-..+ ..|..+...+-.+|.+.|+.++|.
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 44566777666666554 222 2333333 3578899999998887765543 348888999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-C---------hHHH
Q 006614 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-R---------DISA 250 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 250 (638)
.+|++.... .|+..-...+..+|.+.+.+.+-.+.--++-+.-+ .+...+=++++.....- . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999998876 56677777788888888887664444444444332 33444444444444321 1 1235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 251 IRLFDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 251 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.+.++.+.+.+ ---+..-.-.-...+...|.+++|++++ ....+.-..-+...-+.-++.+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666666543 1112222223334455678899999888 444443333344444556677788888888888888888
Q ss_pred HcCCC
Q 006614 329 KEGCK 333 (638)
Q Consensus 329 ~~~~~ 333 (638)
..|..
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 87644
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=9.8e-06 Score=79.39 Aligned_cols=248 Identities=12% Similarity=0.082 Sum_probs=182.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006614 134 CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
-+.++|+..+|.-.|+..++.+ |-+...|-.|.......++-..|+..+.+..+..+. |......|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567888999988898888764 557788888888889988888999999998887544 77888888899999999999
Q ss_pred HHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHccCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 214 IHELYNEMCNEGNCF-------PDTVTYSALISAFGKLGRDISAIRLFDEMK-ENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 214 A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
|+..++..+...+.. ++...-.. +.+.....+....++|-++. ..+..+|..++..|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998886654310 00000000 12222333344555555544 455557888888898899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 286 LGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+.|+..+...+. |...||-|...+....+..+|+..|.+.++. +|+ +.+...|.-.|...|.+++|.+.|=....
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999988765 7889999999999999999999999999885 343 33455577788899999999888776643
Q ss_pred C---------CCCCChhhHHHHHHHHHhcCChH
Q 006614 365 L---------QCKPNVVTYNTVIKSLFESKAPA 388 (638)
Q Consensus 365 ~---------~~~p~~~~~~~ll~~~~~~~~~~ 388 (638)
. ...++...|.+|-.++...++.+
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 2 12234567777776666666655
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.64 E-value=7.4e-06 Score=76.11 Aligned_cols=188 Identities=10% Similarity=-0.031 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH--H
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA--N 196 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 196 (638)
......+..+...+...|++++|...++++.... +.++ .++..+..++.+.|++++|...|+++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788889999999999999999999988743 2222 46788889999999999999999999876432111 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006614 197 TYNSMILMLMQE--------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
++..+..++.+. |++++|.+.|+++.+..+. +...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 455566666654 7889999999999887642 2222222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...+...|.+.|++++|...++...+..+. .....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 225667788999999999999998876431 23567888899999999999999988888765
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2e-05 Score=79.43 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
.|..++.+|+..|+..+|..+..+..++ +|++..|..+.+......-+++|.++.+..... .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 3555677777777777777777777663 677777777777777666677777777665432 1112222233
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 567 (638)
+.++++++.+.|+.-.+.. +--..+|-.+..+..+.++++.|.+.|...... .|| ...||.+-.+|.+.|+-.+|.
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 4677777777777665543 334566777777777778888888877777764 343 667888888888888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888777655 33455666666667777888888887777664
No 117
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.0011 Score=68.83 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=159.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI--LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
...+++..|......+++. .|+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|-+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567888888888888774 3443 23334444 46899999999999888777655 88899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HH
Q 006614 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE----------VE 283 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~ 283 (638)
|..+|+...... |+......+..+|++.+++.+-.+.=-+|.+. ++-+...+=++++.+...-. ..
T Consensus 96 ~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 77888889999999999887655555455442 33455555556666554221 34
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 284 KALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYGLF-MNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 284 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
-|.+.++.+.+.+ .--+..-.......+...|++++|..++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5677777777664 2223333344455677889999999999 4444443444555556677788888999998888888
Q ss_pred HHHCC
Q 006614 362 MEALQ 366 (638)
Q Consensus 362 ~~~~~ 366 (638)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88766
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=2.4e-05 Score=84.10 Aligned_cols=203 Identities=11% Similarity=0.100 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC----VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
++..|...+.-....++.+.|+++.+++++.-- ..-..+|.++++.-..-|.-+...++|+++.+. +. .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHHHH
Confidence 455555555555555666666666655554310 011234555555544445555555555555443 11 122344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTLVSIY 276 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~ 276 (638)
.|...|.+.+++++|-++++.|.+.-. .....|..++..+.+..+-+.|..++.+..+. -|. .......+..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 555555555555555555555555432 34445555555555555555555555554442 121 22233334444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
.+.|+.+.+..+|+.....-+. -...|+..|+.-.+.|+.+.+..+|++.+..+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 4555555555555554443222 3344555555555555555555555555554443
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=5.3e-05 Score=67.07 Aligned_cols=247 Identities=15% Similarity=0.107 Sum_probs=138.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 006614 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHE 216 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 216 (638)
-.|+|..++......... +.++..-.-+.++|...|.+..... +++... .|.......+...+...++-+.-+.
T Consensus 20 Y~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 345555555444433321 1334444445556666655443322 222221 3334444444444444444444333
Q ss_pred -HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 217 -LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 217 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+.+.+...... .+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.++.|.+.
T Consensus 94 ~l~E~~a~~~~~-sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 94 SLYELVADSTDG-SNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHhhccc-hhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33333332221 333333344456677778888877766511 3333333344556777778888888888765
Q ss_pred CCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 296 GCALTVYTYTELIKGLG----RAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 296 ~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
. +..|.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++.......+ +.
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 2 5556665554443 355678888888888765 5667778888888888888888888888888775543 45
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 006614 372 VTYNTVIKSLFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~ 401 (638)
.+...++-.....|...++..+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 555555555556666666656666666654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=6.8e-06 Score=76.37 Aligned_cols=190 Identities=13% Similarity=0.052 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P-TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VT 233 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 233 (638)
...+..+...+..+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|+..|+++.+..+..+.. .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667788888899999999999999998776322 1 12467788889999999999999999998876532332 23
Q ss_pred HHHHHHHHHcc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 234 YSALISAFGKL--------GRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 304 (638)
+..+...+... |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44455555543 67888888888887752 332 22222211100 000 00 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
..+...+.+.|++++|...++...+..+. | ....+..+..++.+.|++++|...++.+....
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 24567789999999999999999987432 2 45788899999999999999999999887643
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.61 E-value=2.3e-05 Score=83.57 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=161.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.+...+..++..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 345677888888888888888888888876665222 333344444466666766555554 3322
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
......++.-...+...|.+.+ -+...+..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... +
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 2222233322333333444432 35557788888999999999999999999988754 888888888888888 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCChHHHHHHHH
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV-TYNTVIKSLFESKAPASEASAWF 395 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~ 395 (638)
+++|..++.+.+.. +...+++..+.+++.++.... |+.. .+-.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------- 210 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------- 210 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHH-----------------
Confidence 99998888877654 666678888888888887743 3322 222222
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 396 EKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG 453 (638)
Q Consensus 396 ~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (638)
+.+... |..--..++-.+...|...++++++..+++.+.+.. +.|..+..-++..|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222221 222344567778888999999999999999999986 667777777777776
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=1.5e-05 Score=84.17 Aligned_cols=150 Identities=9% Similarity=0.014 Sum_probs=128.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
+.+++++..+-.|..+..+.|.+++|..+++...+. .+-+.......+..+.+.+++++|...+++.....+. +....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 356788999999999999999999999999999885 3556678888999999999999999999999988654 78888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+.+..++.+.|++++|.++|+++...++ .+..++..+...+-..|+.++|...|+...+.- .+....|+..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8899999999999999999999998553 458899999999999999999999999998752 34555555443
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=5.8e-05 Score=81.39 Aligned_cols=232 Identities=13% Similarity=0.034 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKMEAL-QCKP---NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 411 (638)
...|-..+......++.+.|.++.+++... +++- -...|.++++..-.-| .++...++|++..+.- -....|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHhc--chHHHHH
Confidence 334444445555555555555555554331 1100 1123333333332333 2333355555555431 1123466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHcc
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SSARVYAVMIKHFGKC 490 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 490 (638)
.|...|.+.+.+++|.++++.|.++- ......|...++.+.+.++-+.|..++.++.+.-.. .........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 67777777777777777777777652 456677777777777777777777777777664211 1344455556666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHH
Q 006614 491 GRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
|+.+.+..+|+...... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|- -..|...+..=-..|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 77777777777776542 33456777777777778888888888888877776654 3345555555455566544443
Q ss_pred HHHH
Q 006614 569 IFTK 572 (638)
Q Consensus 569 ~~~~ 572 (638)
+=.+
T Consensus 1693 VKar 1696 (1710)
T KOG1070|consen 1693 VKAR 1696 (1710)
T ss_pred HHHH
Confidence 3333
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.9e-05 Score=67.89 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=103.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..+.+.+.......+......-...|+..|++++|++...... +......-+..+.+..+++-|.+.+++|...
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444333333333333455777777887777765521 2333334445566667777777777777764
Q ss_pred CCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006614 472 CGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 547 (638)
.+..+.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++.+.+... ++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 345566666666554 24577777777777664 3577777777777777777777777777777776432 56
Q ss_pred HHHHHHHHHHHhcCChH-HHHHHHHHhhh
Q 006614 548 NSHNIILNGLAKSGGPK-RAMEIFTKMQH 575 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~-~A~~~~~~m~~ 575 (638)
.+...++..-...|+.. --.+.+.+++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66655555555555543 33445555553
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=3.5e-05 Score=81.47 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=167.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
++.....+=.+++.-|..++|-+-+..-.+ .++...++-....+++.-....... ...++..+..|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~ 94 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR-----------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVAR 94 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH-----------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHH
Confidence 445555555667777777776543332222 2333333333334444333333333 4557999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
+..+.|.+++|..+++...+..+ .+......+...+.+.+++++|+...++..... +-+....+.+..++.+.|+++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999765 567778888999999999999999999999874 346777888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
+|..+|+++...+.. +..++..+...+-..|+.++|...|+...+.. .|....|+..+ +++..-..+++.+.
T Consensus 172 ~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 999999999985433 58899999999999999999999999998752 23444555443 34444555666653
Q ss_pred HC----CCCCChhhHHHHHHHHHhc
Q 006614 364 AL----QCKPNVVTYNTVIKSLFES 384 (638)
Q Consensus 364 ~~----~~~p~~~~~~~ll~~~~~~ 384 (638)
.. |..........+|..+-+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhhc
Confidence 33 2333444555555554443
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=1.1e-05 Score=67.66 Aligned_cols=95 Identities=14% Similarity=-0.037 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
+..+...+...|++++|...|+.+....+ .+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33344455555555555555555555443 344555555555555555555555555555432 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 006614 278 KLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~ 295 (638)
..|++++|...|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555544
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=3e-05 Score=69.00 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HccCC--hHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF-GKLGR--DIS 249 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 249 (638)
.++.+++...+++..+..+ .+...|..+...|...|++++|...|++..+..+ .+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4455555555555555432 2566666666666666666666666666666554 4555555555543 44454 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
|.+++++..+.. +-+..++..+...+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666543 2245556666666666666666666666665543
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=9.1e-06 Score=81.75 Aligned_cols=225 Identities=15% Similarity=0.082 Sum_probs=166.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
.+++|--..--.+...+...|-..+|..++++. ..+..++-+|...|+-.+|..+..+..++ +|++..|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 344444444456777888888888888888764 35667788888888888888888887774 6788888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+.+.....--+++|.++++..... .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHH
Confidence 88888877777788888887765432 22223333344688888888888776653 3467788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
.++++.|.+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+-+.. +...|...+....+.|.+++|.+.
T Consensus 532 lek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHH
Confidence 88888888888888776443 6778888888888888888888888888887633 555666677777888888888888
Q ss_pred HHHHHHC
Q 006614 359 FNKMEAL 365 (638)
Q Consensus 359 ~~~~~~~ 365 (638)
+.++.+.
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8887654
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=4.1e-05 Score=68.13 Aligned_cols=120 Identities=11% Similarity=0.127 Sum_probs=82.4
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI-YFKLGE--VEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~ 284 (638)
.++.+++...++...+.++ .|...|..+...|...|++++|...+++..+.. +.+...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5566777777777777665 667777777777777777777777777777653 2356666666665 355565 477
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
|.+++++..+.++. +...+..+...+.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777776654 66666777777777777777777777776653
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=4.8e-05 Score=67.44 Aligned_cols=164 Identities=15% Similarity=0.057 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
|... ..+-..+.-.|+-+....+........+ .|.......+....+.|++.+|...|.+..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 3444 5566777778888888888777666443 566777778999999999999999999988753 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
-+|.+.|+.+.|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 9999999999999999998887554 6677888888888999999999999998877544 7777778888889999999
Q ss_pred HHHHHHHHHH
Q 006614 354 DALKLFNKME 363 (638)
Q Consensus 354 ~A~~~~~~~~ 363 (638)
+|.++...-.
T Consensus 220 ~A~~i~~~e~ 229 (257)
T COG5010 220 EAEDIAVQEL 229 (257)
T ss_pred HHHhhccccc
Confidence 9988876543
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=0.00021 Score=76.54 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+.. ..+...-|
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~----- 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKW----- 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccch-----
Confidence 4556677777777777888887777766654322 223333333466666666665555 2222 11111111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006614 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
..+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.+.+...|... +++
T Consensus 100 ---------~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 100 ---------AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---------hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2223333344443 2244577788999999999999999999999988 88899999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006614 460 AANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (638)
+|.+++.++... |...+++.++.+++.++.... |+...+ -..+.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHH
Confidence 999988887763 556667888888888877653 332111 111222222
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 540 ED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593 (638)
Q Consensus 540 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 593 (638)
.. |..--..++-.+...|....+++++..+++.+.+..-+ |.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11 11122334444555556666666777777666654221 4445555555554
No 132
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.8e-05 Score=66.54 Aligned_cols=96 Identities=7% Similarity=-0.119 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
+.....++...|++++|...|+..+... +.+...+..+..++.+.|++++|...|++..+..+ .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3344555666666666666666665542 44556666666666666666666666666665532 255666666666666
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 006614 208 EGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~ 225 (638)
.|++++|+..|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666666654
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00018 Score=69.61 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=54.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHH
Q 006614 454 KAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAY 532 (638)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 532 (638)
..|++++|+..++.+.+. .+.|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344445555555544443 3344444444445555555555555555555543 233 333344445555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 006614 533 SLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 533 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
.+++...... +-|+..|..|..+|...|+..+|.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 5555555442 234555555555555555554443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00057 Score=60.27 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=114.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+|..++-+....|+.+.|...++++... ++.+...-..-...+-..|++++|.++|+.+++.++ .|.+++-.-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHH
Confidence 3445556666778888888888887665 222222222222334457888899999998888775 6777787777777
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVE 318 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~ 318 (638)
-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.| +.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 7778877888887777765 5568888888888888888888888888888876443 5555555555544333 455
Q ss_pred HHHHHHHHHHHcC
Q 006614 319 DAYGLFMNMLKEG 331 (638)
Q Consensus 319 ~A~~~~~~~~~~~ 331 (638)
.|.++|.+.++..
T Consensus 209 ~arkyy~~alkl~ 221 (289)
T KOG3060|consen 209 LARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHhC
Confidence 6777777777653
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00046 Score=66.87 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILM 204 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 204 (638)
..+.-........|++++|.+.++.+++. .+-|+.........+.+.++..+|.+.++++... .|+ ......+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 34445555566677777777777776664 3455666666667777777777777777777766 333 5556667777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
|.+.|++.+|+..++......+ .|...|..|..+|...|+..++.....+. |...|+++.
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p--~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~ 443 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDP--EDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQ 443 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHH
Confidence 7777777777777777777665 56777777777777777777666655443 345677777
Q ss_pred HHHHHHHHHhC
Q 006614 285 ALGLVQEMKGK 295 (638)
Q Consensus 285 A~~~~~~m~~~ 295 (638)
|...+....+.
T Consensus 444 A~~~l~~A~~~ 454 (484)
T COG4783 444 AIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHh
Confidence 77777666654
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0012 Score=58.35 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=98.1
Q ss_pred HHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 392 SAWFEKMKA---NG-VLPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466 (638)
Q Consensus 392 ~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (638)
.+++..+.. .| ..++.. .|..++-+....|+.+.|..+++++...- |.+...-..-...+-..|++++|.++++
T Consensus 32 v~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~ 110 (289)
T KOG3060|consen 32 VQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYE 110 (289)
T ss_pred HHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHH
Confidence 555555443 22 333432 23444455556666666766666666552 3333333333334445566666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006614 467 ELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 546 (638)
.+.+.. +.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. +.+
T Consensus 111 ~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n 187 (289)
T KOG3060|consen 111 SLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFN 187 (289)
T ss_pred HHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCc
Confidence 666653 445555555455555556656666666655554 34566666666666666666666666666666542 223
Q ss_pred HHHHHHHHHHHHhcC---ChHHHHHHHHHhhh
Q 006614 547 INSHNIILNGLAKSG---GPKRAMEIFTKMQH 575 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 575 (638)
+..+..+...+.-.| +.+.|.++|.+..+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444555444443 34556666666654
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=7.2e-05 Score=62.48 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...+...+.+.|++++|...|+.+...+. .+...+..+...+...|++++|...|++..+.++ .+...+..+...+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHHH
Confidence 33444444444455555554444444321 1444444444444444555555555544444332 33344444444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|.+.|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444444
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=7.4e-05 Score=62.42 Aligned_cols=103 Identities=11% Similarity=-0.020 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+......+...+.+.|++++|...++.+...+ +.++..+..+...+.+.|++++|...|++..+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3455677788899999999999999999988754 5688899999999999999999999999998875 3478888889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
...+...|++++|...|+...+..+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998763
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00017 Score=60.89 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSM 201 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 201 (638)
.|..++..+. .++...+...++.+.... +.+ ....-.+...+...|++++|...|+++......++ ......+
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3333443332 444444444444444432 111 12222233444444555555555555444431111 1122233
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 255 (638)
...+...|++++|+..++...... .....+......+.+.|+.++|...|+
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444455555555443321110 222333344444444444444444443
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=6e-06 Score=49.99 Aligned_cols=33 Identities=45% Similarity=0.713 Sum_probs=25.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777778888888888888888777777776
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00015 Score=70.89 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++++..+..+ .+......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 334455566666777777777777777662 33 333466666667777777777777776554 455666666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
+.+.++++.|+++.+++.+.. +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777642 2234477777777777777777777776654
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.019 Score=58.16 Aligned_cols=205 Identities=8% Similarity=0.086 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHHcCCCHHHHHHHHHHhhhCCCC
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIV----------NILGKAKMVNKALSIFYQIKSRKCK 192 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~ 192 (638)
|-+..|..++..-...-.++-|...|-+.-. -+.....-.+- ..-+--|.+++|.++|-.+-.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh---
Confidence 3456676666655555555555554443322 11111111111 1112235667777776666544
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
..-|..+.+.|++-++.+++..=-.......-...++.+...+.....+++|.+.+..-... ...
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 22345556666666665554331110000011245666666666666666666666443211 124
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 352 (638)
+.++.+..++++-+.+...+.+ +....-.+.+.+.+.|.-++|.+.|-+-- . | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHHH
Confidence 4555555555554444443332 44555566777777777777776664321 1 1 2234556666777
Q ss_pred HHHHHHHHHH
Q 006614 353 EDALKLFNKM 362 (638)
Q Consensus 353 ~~A~~~~~~~ 362 (638)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777766654
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00029 Score=68.91 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=85.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
...|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+....+.+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3455555666677777777777777653 33 3344666666677777777777777765433 56666666677778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.++++.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888887776333 55578888888888888888887777664
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.0006 Score=57.54 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=49.9
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~ 284 (638)
.++...+.+.++.+...++..+ .....-.+...+...|++++|...|+........++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555554432100 011222233444445555555555555554431111 1123334445555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
|+..++...... .....+....+.+.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422211 1233344444555555555555555543
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.3e-05 Score=48.45 Aligned_cols=33 Identities=42% Similarity=0.828 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 546 (638)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.4e-05 Score=47.88 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006614 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEY 615 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 615 (638)
.+|+.++++|++.|+++.|.+++++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356677777777777777777777777666665
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.02 Score=54.53 Aligned_cols=288 Identities=15% Similarity=0.064 Sum_probs=175.2
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+.+.+..++.+|+..+....+..+. ++.-|..-...+..-|++++|..-.+.-++..+ -........-..+...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC--CccccccchhhhhhhhHHH
Confidence 5666777888888888888877544 566677777777888888888887777665433 2222333333444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-ALTVYTYTEL-IKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 325 (638)
.+|.+.++ +...| ....++..++....... +|.-.+|..+ ..++.-.|+.++|.+.--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444444 11111 12223333333333222 2333444443 356678899999988877
Q ss_pred HHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 006614 326 NMLKEGCKPDIVLINNLIN--VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGV 403 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~ 403 (638)
..++.... +. +...++ ++.-.++.+.|...|++....+ |+......+-.. .+.++.+...|
T Consensus 194 ~ilkld~~-n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~-----------~k~le~~k~~g- 256 (486)
T KOG0550|consen 194 DILKLDAT-NA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM-----------PKKLEVKKERG- 256 (486)
T ss_pred HHHhcccc-hh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh-----------HHHHHHHHhhh-
Confidence 77765322 22 233333 4455688899999999887754 554433322211 22234444443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006614 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK---GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480 (638)
Q Consensus 404 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (638)
+-..+.|++.+|.+.|.+.+.. +..++...|........+.|+.++|+.--+...+... .-+..|
T Consensus 257 -----------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikal 324 (486)
T KOG0550|consen 257 -----------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKAL 324 (486)
T ss_pred -----------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHH
Confidence 3467899999999999998865 3445666777778888889999999988888776410 112223
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006614 481 AVMIKHFGKCGRLSDAVDLFNEMKKLR 507 (638)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 507 (638)
-.-..++...++|++|.+-|++..+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445566788999999888876653
No 148
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.88 E-value=0.005 Score=51.69 Aligned_cols=103 Identities=10% Similarity=0.037 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.|+..-...+.+++.+.|+..+|...|++...--+-.|......+.++....+++..|...++++.+.++...+..+-..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555555555555555555555554434445555555555555555555555555555444322222223334
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+.+.+...|+..+|...|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 44445555555555555555544
No 149
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00024 Score=69.75 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=67.7
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH 550 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 550 (638)
.+.+......+++......+.+++..++.+.... ....-..|..+++..|.+.|..++++++++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444555555555555555566666666555543 11111223345666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 551 NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 551 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666655544444555555444444443
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00025 Score=69.58 Aligned_cols=125 Identities=12% Similarity=0.224 Sum_probs=107.4
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 436 KGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY--CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
.+.+.+...+..+++.+....+++.+..++.+.... +...-..+..++++.|...|..++++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344778888889999999999999999999988875 222234455699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS 560 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 560 (638)
++|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999887777888887777777665
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.8e-05 Score=46.00 Aligned_cols=32 Identities=44% Similarity=0.672 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 545 (638)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00078 Score=54.64 Aligned_cols=98 Identities=10% Similarity=0.035 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHH
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMIL 203 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 203 (638)
+...+..+.+.|++++|.+.+..+.+... +.....+..+..++.+.|+++.|...|+.+....+. ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444445555555555555555544211 011233444444555555555555555554433111 11333444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 4445555555555555554443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.78 E-value=0.001 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+..+...+.+.|+.++|.+.++++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.018 Score=53.13 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY---NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
++..+......+.+.|++++|...|+++....+.+ .... -.++.++.+.+++++|...|++..+..|..|+. .|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 44444455556667788888888888887764332 2222 345677788888888888888888877654544 233
Q ss_pred HHHHHHHc--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 236 ALISAFGK--LG---------------R---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 236 ~l~~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..+.+.+. .+ + ..+|++.|+.+++. -|+ ..-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH
Confidence 33333221 11 1 13444555555543 132 22344454444444322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 296 GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
=...--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111114456688888888888888888875 333345566777888888888888887776553
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00051 Score=52.88 Aligned_cols=89 Identities=26% Similarity=0.363 Sum_probs=36.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33344444444444444444444332 222333334444444444444444444444332 112233444444444444
Q ss_pred CHHHHHHHHHHH
Q 006614 281 EVEKALGLVQEM 292 (638)
Q Consensus 281 ~~~~A~~~~~~m 292 (638)
++++|...+...
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 444444444443
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00068 Score=51.80 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=41.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEI-KPDAVSYNTILGCLSRAG--------MFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
|..+...|++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555554444321 2334555666666666677777777766
Q ss_pred HHHhc
Q 006614 625 EAVGK 629 (638)
Q Consensus 625 ~~~~~ 629 (638)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
No 157
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.75 E-value=0.00047 Score=52.68 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCChhhHHH
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGC-KPDIVLINNLINVLGRAG--------RLEDALKLFNKMEALQCKPNVVTYNT 376 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 376 (638)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.+++. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666655442 23344555666666666666666666
Q ss_pred HHHHHHh
Q 006614 377 VIKSLFE 383 (638)
Q Consensus 377 ll~~~~~ 383 (638)
++..+++
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655443
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=4e-05 Score=44.69 Aligned_cols=30 Identities=30% Similarity=0.707 Sum_probs=20.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777766653
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00059 Score=52.52 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
|..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|...|+........ +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3344445555555555555555554431 222344444445555555555555555554443211 23344444455555
Q ss_pred cCCHhHHHHHHHHHHh
Q 006614 208 EGYYEKIHELYNEMCN 223 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~ 223 (638)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555544443
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.70 E-value=0.018 Score=53.14 Aligned_cols=184 Identities=10% Similarity=0.012 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV---LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
++..+-.....+.+.|++++|.+.|+++.... +-++.. ...++.++.+.+++++|...|++..+..+......|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 45555566777788999999999999998853 222333 25567888999999999999999988754433344444
Q ss_pred HHHHHHh--cC---------------C---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 201 MILMLMQ--EG---------------Y---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+.+++. .+ + ..+|++.|+++++.. |+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHH
Confidence 4444431 11 1 245667777777755 333 2234444444433321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK--GCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
=...-..+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111225667788888888888888888875 222344566677888888888888887766543
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0019 Score=58.74 Aligned_cols=98 Identities=21% Similarity=0.191 Sum_probs=76.1
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+-+.+.+++++|+..|.+..+..+. |.+-|..-..+|++.|+++.|++-.+..+..++ .-..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcH
Confidence 5566778888888888888887433 777777788888888888888888888888664 4567888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYT 270 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~ 270 (638)
.+|++.|++..+ +.|+-.+|-
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHH
Confidence 888888888777 457666554
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.67 E-value=7.8e-05 Score=56.01 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 006614 201 MILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~ 220 (638)
+..+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444444
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0015 Score=54.04 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....+...+...|++++|.++|+.+....+. +..-|..|...+-..|++++|++.|.......+ .|...+-.+..+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHH
Confidence 34455556666777777777777777665433 555666677777777777777777777776664 566667777777
Q ss_pred HHccCChHHHHHHHHHHHHC
Q 006614 241 FGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766653
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.63 E-value=0.0034 Score=54.76 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM--GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|++++|...+++.++....+ ....+..+...+.+.|++++|...+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 44567777777888888888888888877643222 1356777777788888888888888887765322 55666666
Q ss_pred HHHHHhcCCHhHHH
Q 006614 202 ILMLMQEGYYEKIH 215 (638)
Q Consensus 202 ~~~~~~~g~~~~A~ 215 (638)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654433
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0027 Score=55.37 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.....+ .+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHH
Confidence 344677778888889999999999999886543332 46788888999999999999999999988664 45666777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
+...+...|+...+..-++.... .+++|.+++++....+ ...|..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA----PNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC----chhHHHHHHHHHhcCc
Confidence 77777777776555444333321 2456666666666542 2224444444444443
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.0018 Score=63.76 Aligned_cols=91 Identities=7% Similarity=-0.087 Sum_probs=44.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
..+...|++++|++.|.++++.. +.+...+..+..+|.+.|++++|+..++++...... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 33444555555555555555432 333444445555555555555555555555444221 4444455555555555555
Q ss_pred HHHHHHHHHHhCC
Q 006614 213 KIHELYNEMCNEG 225 (638)
Q Consensus 213 ~A~~~~~~~~~~~ 225 (638)
+|+..|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555555443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00014 Score=54.69 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=45.3
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 006614 525 AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYNTILGCLSRAGMFEEAA 602 (638)
Q Consensus 525 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 602 (638)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .. ..| +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46667777777777665321 1334444466677777777777777766 21 112 2233334466677777777777
Q ss_pred HHHHH
Q 006614 603 RLMKD 607 (638)
Q Consensus 603 ~~~~~ 607 (638)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76664
No 168
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=8.6e-05 Score=43.25 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 515 YNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
|++++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.002 Score=63.35 Aligned_cols=91 Identities=12% Similarity=-0.019 Sum_probs=62.9
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
...+...|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..+++++...+ .+...|..+..++...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence 34455667777777777777766433 566677777777777777777777777777654 456667777777777777
Q ss_pred hHHHHHHHHHHHHC
Q 006614 247 DISAIRLFDEMKEN 260 (638)
Q Consensus 247 ~~~A~~~~~~m~~~ 260 (638)
+++|+..|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777664
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.011 Score=56.28 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCc--HH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEK----GFPP-CPAAYCSLINGYGKAKRYEAANELFLELKEY---CGCSS--AR 478 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~ 478 (638)
.|......|...|++++|.+.|.+.... +-+. ....|......|.+. ++++|.+.+++.... ...++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3555566677777888777777765321 1111 112333334444333 677776666665431 11111 22
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 479 VYAVMIKHFGKC-GRLSDAVDLFNEMKKL----RCKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 479 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
.+..+...|... |++++|++.|++..+. + .+. ...+..+...+.+.|++++|.++|++...
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444555555 5566666555554322 1 111 12334444555555555555555555554
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0017 Score=61.44 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK-AKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
.+|..+++...+.+..+.|.++|.+..+. ...+..+|...+..-.+ .++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666666666666666666532 22334445444444233 34555566666666554 33355666666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+.+.|+.+.|..+|++....-+... ....|..++..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655421101 112555555555555555555555555554
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0026 Score=60.25 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006614 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK-AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. .+.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777888888888877543 3344555555555333 45666688888887776 55667777777777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 487 FGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
+.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888877664 22222 36777777777778888888887777764
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0016 Score=56.59 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--TANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
.+..+...+...|++++|...|.+.......+ ...+|..+...+...|++++|+..+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444555555555555555554332111 1234555555555566666666666555554
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.0026 Score=55.34 Aligned_cols=95 Identities=14% Similarity=0.002 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP--DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 589 (638)
...|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666777777777777776543222 13466667777777777777777777776531 11234455555
Q ss_pred HHHH-------ccCCHHHHHHHHHH
Q 006614 590 GCLS-------RAGMFEEAARLMKD 607 (638)
Q Consensus 590 ~~~~-------~~g~~~~A~~~~~~ 607 (638)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 67777755555443
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0079 Score=48.04 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=29.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455555555555555555543322 223334445555555555555555555543
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.0065 Score=55.43 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=81.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 354 (638)
-+.+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 355778889999999988887655 7888888888899999999998888888876433 45688888889999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHH
Q 006614 355 ALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
|.+.|++..+ +.|+..+|..-+..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9998888876 45877777665544
No 177
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.17 Score=51.67 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP--------TANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
-.|.++.|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|+|++|.++|-+|-+..
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 3688888888888877777888888887766544 2221 01111111111 2467777777776665422
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 227 CFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
..+....+.|++-...++++. .|-.. -...|+.+.+.++....|++|.+.+..-...
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------
Confidence 234455566666555554432 11111 1345666777777777777777766543211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
...++++.+..++++-..+-..+ +-|....-.+..++.+.|.-++|.+.+-+
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 12345555555555544443333 22445556666777777777766665533
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0033 Score=52.11 Aligned_cols=96 Identities=8% Similarity=-0.091 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 346 (638)
.....+...+...|++++|.++|+.+...++. +...|..|.-++-..|++++|+..|.......+. |...+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 34444555566677777777777766665544 5556666666666777777777777777666543 566666666777
Q ss_pred HccCCHHHHHHHHHHHHH
Q 006614 347 GRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~ 364 (638)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777766554
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.43 E-value=0.0019 Score=56.06 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChHHHH
Q 006614 509 KPDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS----------------GGPKRAM 567 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~ 567 (638)
..|..+|..+++.+.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 46788888888888754 56677777788888888888888888888876431 1234456
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 006614 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
+++++|...|+.||..++..+++.|++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666664443
No 180
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.047 Score=52.17 Aligned_cols=54 Identities=19% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.+.+..++.+|+..+...++..+. ++..|..-...+...|++++|.--.+.-++
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 345566666677777666666543 455555555555566666666555544433
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.41 E-value=0.14 Score=49.54 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH-NIIL 554 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 554 (638)
..+|...++.-.+....+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--..+ .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777778888999999999999988 6788889999988665 68888999999876654 3554444 4566
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC
Q 006614 555 NGLAKSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
..+...++-+.|..+|+..+.. +..+ ..+|..+|.--..-|+...+..+=+.|.+ +.|...+.....+-+.-..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6778889999999999966542 1222 56899999988999999999998888874 35666555555555544433
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.015 Score=55.35 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=49.5
Q ss_pred HHHHHcc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HH
Q 006614 238 ISAFGKL-GRDISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-----LTVY-TY 304 (638)
Q Consensus 238 ~~~~~~~-g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~-~~ 304 (638)
...|-.. |++++|++.|++..+. | .+ -..++..++..+.+.|++++|.++|++....... .+.. .|
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3344455 6777777777766532 2 11 1234556667777777777777777776654221 1111 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 305 TELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
-..+-++...||...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22333555667777777777776654
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.39 E-value=0.016 Score=52.07 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..+......+.+.|++++|...|+.+....+ +--..+.-.++.++.+.|+++.|...|++.++..|..|.. .+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHH
Confidence 3344445556677777777777777765422 1234455566777778888888888888877766543332 222222
Q ss_pred HHHHcc-------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 239 SAFGKL-------------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 239 ~~~~~~-------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
.+.+.. +...+|...|+. ++.-|=......+|...+..+.+. =...--
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~----la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR----LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 222211 111223333333 333333344445555444444322 011111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHH
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCK--PDIVLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A 355 (638)
.+.+.|.+.|.+..|..-++.+++.=+. ........++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2456677777777777777777765111 1122445566666666666533
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.011 Score=60.83 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006614 402 GVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 402 ~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+.|...|...+.+.... ++.+.|..+|++..+.. |.....+..+..++.....+. +.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~---------------~~ 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQ---------------PL 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcC---------------Cc
Confidence 3456677777777664332 23667888888888775 555555555444332211000 00
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 555 (638)
...+...+.+...+.... ....+...|..+.......|++++|...++++++.. |+...|..+..
T Consensus 396 ------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~ 461 (517)
T PRK10153 396 ------------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGK 461 (517)
T ss_pred ------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 001122223333332221 112233445444444445566666666666666543 45556666666
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 006614 556 GLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+...|+.++|.+.+++...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666666553
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.097 Score=46.88 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=111.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
....|+..+..+-+..+.. ....+++.+-.....+..++++++-.. ...++++..+.-.|++.-.
T Consensus 132 ~~~lgnpqesLdRl~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 132 QQYLGNPQESLDRLHKLKT--------VVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHhcCCcHHHHHHHHHHHH--------HHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhh
Confidence 3345555555444443322 122333444444444556666655433 2345677777778888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK-----IYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~~ 289 (638)
...+.+.++.++. .++.....|++.-.+.|+.+.|...|+...+..-..|.. +.......|.-.+++..|...+
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8888888886654 677778888888888888888888888766532222333 3333344555667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006614 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 290 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
.++...+.. |+..-|.-.-+..-.|+..+|++..+.|++..+
T Consensus 276 ~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 276 TEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 777766543 555555544445556777777777777777533
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0056 Score=53.30 Aligned_cols=104 Identities=22% Similarity=0.323 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006614 229 PDTVTYSALISAFGK-----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
.|-.+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 566666666666663 46677777778888888888888888888877654 3221 1111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
-| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 ------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 01 12334567777777777777777777777777766554
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.35 E-value=0.02 Score=59.10 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHh--cC---CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--------ChHHHHHHHHH
Q 006614 190 KCKPTANTYNSMILMLMQ--EG---YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG--------RDISAIRLFDE 256 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 256 (638)
..+.+...|...+++... .+ ..++|.++|++..+..+ .....|..+..++.... +...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345577777777766443 22 26678888888877664 33344444333222111 11222333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.... ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++..+.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2221 122244555555555555566666666666666554 355566666666666666666666666665543
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.35 E-value=0.073 Score=44.98 Aligned_cols=134 Identities=10% Similarity=0.012 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-CCCHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTANTYNS 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 200 (638)
-|+..--..+..++.+.|++.+|...|++.+.--...|+...-.+.++....+++..|...++.+-+..+ ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3566666788899999999999999999998876778899999999999999999999999999877632 124455667
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
+.+.|...|++++|..-|+...... |+..........+.+.|+.++|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8899999999999999999999865 565555555566778888877765554444
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.00086 Score=47.34 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+.+.|++++|...|+++.+..+. +...+..+..++.+.|++++|...|+++.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34555566666666666666655422 55556666666666666666666666665544
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.015 Score=46.46 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHH
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMG--PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILM 204 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 204 (638)
.....++...|+.++|+.+|+..+..|.... ...+..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3456778889999999999999988775544 356777888899999999999999998765221 122223334567
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+...|+.++|++.+-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 7888999999999887766 34445655555554
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.0011 Score=47.25 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.|++++|+..|+++....+. +...+..+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444333221 333344444444444444444444444444
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.17 E-value=0.0013 Score=46.92 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=33.6
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+.|++++|++.|+++....+ .+...+..+...+.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456667777777777666554 45556666666666666666666666666654
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.16 E-value=0.011 Score=56.15 Aligned_cols=132 Identities=9% Similarity=0.031 Sum_probs=86.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC-CCCHH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEM----KKLRCK-PDVYTYNALMSGMVRAGMIDDAYSLLRRMEE----DGC-VPDIN 548 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 548 (638)
.|..|...|.-.|+++.|+...+.- ++.|-+ .....+..+..+++-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888887766542 222311 1234567778888888888888888876553 221 12344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 549 SHNIILNGLAKSGGPKRAMEIFTKMQH-----SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+.-+|.+.|.-..++++|+.++.+-.. ....-....+.++..+|...|..+.|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555677777777788888888877542 12223456777888888888888888877665543
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.14 E-value=0.29 Score=47.66 Aligned_cols=456 Identities=14% Similarity=0.150 Sum_probs=234.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--H
Q 006614 134 CLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM--L 205 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~ 205 (638)
.+.++++++++.++|.+..+.. ..++ ...+.++++|... +.+........+.+. .| ...|-.+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 3567888888888888876642 2222 2345677777654 455555555555443 22 2223344433 4
Q ss_pred HhcCCHhHHHHHHHHHHhC--CCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNE--GNCFP-----------DTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQPTAKI 268 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~ 268 (638)
.+.+++.+|++.+...... +...| |-..-+..++.+...|+++++..+++++..+ ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5788899998888776554 21111 1122255677888999999999988888754 33468888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK-GCALTVYTYTELIKGLGRA-GRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 346 (638)
|+.++-.+.+. .|-++++. ....-+..|.. +-.|.+. ..++. -.=..+.|....+..++...
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYem-ilfY~kki~~~d~-------~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPDYYEM-ILFYLKKIHAFDQ-------RPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChHHHHH-HHHHHHHHHHHhh-------chHHhhCcHHHHHHHHHHHH
Confidence 88877666543 33333221 11111223332 2233221 11111 00011233333333333333
Q ss_pred Hcc--CCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHh
Q 006614 347 GRA--GRLEDALKLFNKMEALQCKPNVVTY-NTVIKSLFESKAPASEASAWFEKMKANGVL----PSPFTYSILIDGFCK 419 (638)
Q Consensus 347 ~~~--g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~----~~~~~~~~li~~~~~ 419 (638)
.-. .+..--+++++.....-+.|+.... ..+...... +..++ ..+.+.+....+. .=..+|..++....+
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~-~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV-GHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1122223333333333334443222 222222222 22221 2222222211110 113467778888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCcHHHHHHHH---H
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAA-------YCSLINGYGKA----KRYEAANELFLELKEYCGCSSARVYAVMI---K 485 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~ 485 (638)
.++...|.+.+.-+.... |+... -..+.+..|.. .+...=+.+++......+. .......|+ .
T Consensus 311 ~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak 387 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAK 387 (549)
T ss_pred HHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 899999988887776542 22221 11222333311 1223334444444443221 111112222 2
Q ss_pred HHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHc---CChHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 006614 486 HFGKCGR-LSDAVDLFNEMKKLRCKPDVYTYNALM----SGMVRA---GMIDDAYSLLRRMEEDGCVPD----INSHNII 553 (638)
Q Consensus 486 ~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~~---g~~~~A~~~~~~m~~~~~~p~----~~~~~~l 553 (638)
-+-+.|. -++|+.+++...+.. +-|...-|.+. .+|.+. ..+..-..+-+-..+.|++|- ...-|.|
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 2334444 788899998887742 23433333322 233322 233333444444456677764 3344445
Q ss_pred HHH--HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 006614 554 LNG--LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 554 ~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
.++ +...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++.++ +|+..++++=+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 443 467899998877666665 46799999999999999999999999998864 67777666533
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.12 E-value=0.002 Score=46.14 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-RDISAIRLFDEM 257 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 257 (638)
+|..+...+...|++++|+..|++.++..+ .+...|..+..++...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333334444444444444444444433332 23333333344444443 344444444333
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.083 Score=47.43 Aligned_cols=176 Identities=12% Similarity=0.044 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+-.....+...|++.+|++.|+.+.... .+..+.....++.++.+.|+++.|...|+++.+.-+......+-..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3445556677888999999999999998752 12334667788889999999999999999987763332222233333
Q ss_pred HHHHh-------------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 203 LMLMQ-------------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 203 ~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
.+.+. .+...+|+..|+.+++.. =......+|...+..+.+. =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHHHH----HHHHH
Confidence 33321 112345566666665544 3334444555544444331 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHH
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A 320 (638)
-.+...|.+.|.+..|..-++.+++.=+. ........++.++.+.|..+.+
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 23567788888888888888888776221 1123445667777777777644
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.10 E-value=0.017 Score=54.79 Aligned_cols=96 Identities=16% Similarity=-0.045 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCcHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEE----KGF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEY-----CGCSSAR 478 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 478 (638)
.++.+.+++.-.|+++.|.+.|+.... .|- ........+|...|.-..++++|+..+.+-... ...-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 456677777888888888888776432 221 122344556777777777788887777654331 1112355
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
.|.+|..+|...|..++|+.+.+...
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 67778888888888888877766543
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.031 Score=51.40 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG---EVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
|...|-.|...|...|+++.|...|....+.. .+|...+..+..++.... ...++.++|+++...+.. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44444444444444444444444444444321 223333333333332211 123444444444443322 3334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444444444444444444443
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.07 E-value=0.0026 Score=44.83 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=40.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...+.+.|++++|.+.|+++++..+ -+...+..+...+...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566777777777777777777664 46666777777777777777777777777654
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.018 Score=52.89 Aligned_cols=100 Identities=12% Similarity=0.104 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
|...|-.|..+|.+.|+++.|...|....+.. +.++..+..+..++.... +-.++..+|+++...... |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44445555555555555555555554444431 334444444444332211 233444444444444221 3344444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...+..+|++.+|...++.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 4444444444444444444444433
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.06 E-value=0.0029 Score=45.23 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhC
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNE 224 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 224 (638)
++.+|..+...+...|++++|+..|.+..+..+. +...|..+..++.+.| ++++|++.|++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3556677777777777777777777777766433 5666777777777777 577777777776654
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.23 Score=44.59 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=104.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTE-----L 307 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----l 307 (638)
.-+.++..+...|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667777778888888999999998877677888888999999999999999999997765433333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 308 IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
...+..++++.+|.+.+.+....+.. |+...|.-.-+..-.|+..+|.+.++.|.... |...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhHH
Confidence 34567788899999999988887554 56666655555555689999999999998754 5554444433
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.019 Score=53.47 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=37.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCCh
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRD 247 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 247 (638)
.+.|++++|...|+.+.+..+... ..++-.+...|...|++++|...|+.+.+..+..| ....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334444444444444444321110 23344444444455555555555555444322101 122233333344444555
Q ss_pred HHHHHHHHHHHH
Q 006614 248 ISAIRLFDEMKE 259 (638)
Q Consensus 248 ~~A~~~~~~m~~ 259 (638)
++|...++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.87 E-value=0.32 Score=49.37 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=40.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----------
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY---------- 513 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------- 513 (638)
+...+...+.+...+.-|-++|..+-.. ..+++.....+++.+|..+-++..+. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333444444444555555544321 23444455555555555555544332 22221
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 514 -TYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 514 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
-+.-.-.+|.++|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1122223555666666666666666543
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.029 Score=52.19 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVS 274 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~ 274 (638)
|......+.+.|++++|+..|+.+.+..+..+ ....+..+...|...|++++|...|+.+.+.- -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444556677777777777766553211 02355566666666777777777777666531 0112334444555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006614 275 IYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~ 295 (638)
.+...|+.++|.++|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666667777777777766655
No 206
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.76 E-value=0.41 Score=43.32 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=103.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
+..-+..-.+.|++++|.+.|+.+....+ +-...+.-.++.++.+.+++++|+..+++..+..+..||. .|..-|.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHH
Confidence 33344445677888888888888876522 2244556667778888999999999999988887764554 34444444
Q ss_pred HHcc-------CChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 241 FGKL-------GRDI---SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG 310 (638)
Q Consensus 241 ~~~~-------g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 310 (638)
++.. .+.. +|..-|++.+.+ -|| ..-..+|...+..+... =...=..+.+.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4421 1222 233333333332 122 11122222222222211 00011234567
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 311 LGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|.+.|.+..|..-+++|++. .+- ....+-.+..+|.+.|-.++|.+.-+-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 88888888888888888876 221 223455666778888888887777666554
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.73 E-value=0.041 Score=44.49 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHhcc
Q 006614 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~ 630 (638)
.+.|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4556677777777777777777777777776654 56666666777776655443
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.72 E-value=0.008 Score=43.51 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|.+.+++++|.++++.+...++. ++..|......+.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344445555555555555444322 44444444555555555555555555555443
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.70 E-value=0.63 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCChHHHHHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~ 255 (638)
|..+.......|+.+-|..+++
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHH
Confidence 4455555556666666666553
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.66 E-value=0.65 Score=44.39 Aligned_cols=217 Identities=14% Similarity=0.056 Sum_probs=124.7
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCL--DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL--GKAKMVNK 178 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 178 (638)
..+..+.+.|+-..+.+| |..|-.++ ...|+-..|.++-.+..+. ...|...+..++.+- .-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHH
Confidence 456777888886666554 44444443 3467777887777665432 344555555555543 34788999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHH----HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 179 ALSIFYQIKSRKCKPTANTYNSMILM----LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
|.+-|+.|.. |+++-..=+++ --+.|..+.|..+-+..-..-+ .-...+...+...|..|+++.|++++
T Consensus 139 Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 139 ARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHH
Confidence 9999998886 34443222222 2357888888888888776554 34456778888888888888888888
Q ss_pred HHHHHCC-CCCCHHHH--HHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 255 DEMKENG-LQPTAKIY--TTLVSIY---FKLGEVEKALGLVQEMKGKGCALTVY-TYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 255 ~~m~~~g-~~~~~~~~--~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
+.-.... +.++..-- ..|+.+- .-.-+...|.+.-.+..+. .||.. .-..-...+.+.|++.++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7665432 23332211 1111111 0122344444444443332 23321 1222345666777777777777777
Q ss_pred HHcCCCCCH
Q 006614 328 LKEGCKPDI 336 (638)
Q Consensus 328 ~~~~~~p~~ 336 (638)
.+..+.|++
T Consensus 290 WK~ePHP~i 298 (531)
T COG3898 290 WKAEPHPDI 298 (531)
T ss_pred HhcCCChHH
Confidence 766555553
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.66 E-value=0.65 Score=45.18 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGK---AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
.+-..++-.|....+|+.++++++.+.... ..-++.+-...+-++-+ .|+.++|+.++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556899999999999999987641 12233444445556666 889999999999866666677888888
Q ss_pred HHHHHHHh---------cCCHhHHHHHHHHHHhC
Q 006614 200 SMILMLMQ---------EGYYEKIHELYNEMCNE 224 (638)
Q Consensus 200 ~l~~~~~~---------~g~~~~A~~~~~~~~~~ 224 (638)
.+.+.|-. ....++|++.|.+.-..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 88777642 11255566666655443
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=96.60 E-value=0.16 Score=42.49 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
......-+...|++++|..+|.-+.-.++. +..-|..|...+-..+++++|+..|......+. .|...+-.....+.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHH
Confidence 334445566788888888888888766443 566667777777778888888888887766554 45555666777788
Q ss_pred ccCChHHHHHHHHHHHHC
Q 006614 243 KLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~ 260 (638)
..|+.+.|...|+...++
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 888888888888887773
No 213
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.3 Score=46.74 Aligned_cols=179 Identities=20% Similarity=0.246 Sum_probs=106.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
....-+..+.+...++-|+.+-+.- +..++ ........+-+.+.|++++|...|-+-...-. | ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--P-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--h-----HHHHH
Confidence 3455566666777777776664332 11111 12233344455677888888887766544211 2 33556
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 666667777777788888888763 66666778888888888887776665544 2221 1123455666677777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
|..+-..... .......++ -..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 7666554432 233333333 3457788888877765
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.47 E-value=0.01 Score=43.63 Aligned_cols=61 Identities=21% Similarity=0.415 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNE----GNCFPD-TVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+|+.+...|...|++++|++.|++..+. +...|+ ..++..+...+...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555555555554421 110011 233444444444444444444444443
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.42 E-value=0.034 Score=46.95 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
....++..+...|++++|..+.+.+....+ -|...|..+|.++...|+..+|+++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345566667778888888888888887765 5777888888888888888888888776643 366666554
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.41 E-value=0.023 Score=41.10 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..|.+.+++++|++.++.+...++ .+...+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456677777777777777777665 45666666677777777777777777777664
No 217
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.39 E-value=0.98 Score=44.00 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKG---FPPCPAAYCSLINGYGK---AKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|.+++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777777777777776542 12223333344445555 6677777777777555556666666666665
Q ss_pred HH
Q 006614 486 HF 487 (638)
Q Consensus 486 ~~ 487 (638)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.7 Score=45.45 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=56.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
+.+--+.-+...|+..+|.++-.+..- ||-..|-.-+.++...+++++-.++-+.++ ...-|.-...+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 334444445555666666555444432 555556666666666666655444443332 1233444556666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 524 RAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+.|+.++|..++.+.... . -...+|.+.|++.+|.+.--
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 666666666665544321 1 23445556666655555443
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.28 E-value=0.41 Score=40.26 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=22.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
++..+...|++++|..+++.+.... +-|...|..++.+|...|+..+|.++|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444432 123444444444444444444444444444
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.25 E-value=0.015 Score=42.81 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 549 SHNIILNGLAKSGGPKRAMEIFTKMQHS----EI-KPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+++.+...|...|++++|+.+|++..+. |- .|+ ..++..+..++...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555554421 10 111 3445555666666666666666665543
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=1.1 Score=41.46 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.....|++.+|..+|......... +...--.++..|...|+.+.|..++..+...... ........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCC
Confidence 344555555566555555544222 3344445555566666666666666555432211 11111122233333333333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+..++-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+..
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333332 12444555555555556666666555554444
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.96 E-value=1.8 Score=42.33 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH-HHHH
Q 006614 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDG-CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY-NTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 589 (638)
...|..++.+..+..-.+.|..+|-++.+.| +.+++..+++++..++ .|+...|.++|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777787778888999999999999998 5688889999998665 57888999999986543 3555444 4566
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCC--HHhHHHHHHHHhccCCcc
Q 006614 590 GCLSRAGMFEEAARLMKDMNAKGFEYD--QITYSSILEAVGKVDEDR 634 (638)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~ 634 (638)
.-+.+.++-+.|..+|+..... +..+ ..+|..+|+-=.+.|++-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 7778889999999999966543 3333 347888887766666653
No 223
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=2.8 Score=44.48 Aligned_cols=179 Identities=11% Similarity=0.093 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV----LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
......-+..+.+...++-|+.+.+.- ..++.. .....+-+.+.|++++|...|-+-... .+| ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence 456667788889999999999887752 233333 334445556789999999988776543 122 23
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.-|....+...--.+++.+.+.|. .+...-..|+..|.+.++.++-.++.+.-. .|.- ..-....+..+.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 55666777777778888888888887 566677889999999999988777766544 2211 112345667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
-+++|.-+-..... .......++ -..|++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777766655443 333333333 4568899999888765
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.95 E-value=0.12 Score=50.92 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+.+...++.+..+|.+.|++++|+..|++..+..+. +. .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566666677777777777777777776665322 12 34666666777777777777777666663
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.94 E-value=0.64 Score=37.04 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 547 INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
....+..+..+...|+-+.-.+++..+.. +-.+++...-.+..+|.+.|+..++.+++++.-++|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556666777777777777777654 2246666677777777777777777777777777664
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=95.91 E-value=0.65 Score=39.03 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
....-+...|++++|..+|+-+...++. +...|..|..++-..+++++|...|......+.. |...+-....+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3444556778888888888877766554 5666677777777788888888888776654432 3344455677777888
Q ss_pred CHHHHHHHHHHHHH
Q 006614 351 RLEDALKLFNKMEA 364 (638)
Q Consensus 351 ~~~~A~~~~~~~~~ 364 (638)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888877766
No 227
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.87 E-value=1 Score=42.68 Aligned_cols=205 Identities=14% Similarity=0.054 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCC---CH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS--TCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP---TA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~ 195 (638)
..+|..+..++.+.|.+.++...--.-+.. .+.-+. ..|..+.+.+-+.-++.+++.+-..-... |..| .-
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 357788888889999888877644322211 011122 34445555555555666666655544333 2222 22
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNC----FPDTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQPTAK 267 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 267 (638)
....++..++...+.++++++.|+...+.... ......+-.|...|.+..++++|+-+..+..+. ++..=..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 34455778888889999999999998754221 123457889999999999999998877665432 2221111
Q ss_pred HH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 268 IY-----TTLVSIYFKLGEVEKALGLVQEMKG----KGCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 268 ~~-----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
-| ..+.-++...|++.+|.+.-++..+ .|-.+ -......+.+.|...|+.+.|+.-|++...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 22 3344566778888888777766543 34221 233445677889999999999988887654
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.72 Score=43.10 Aligned_cols=154 Identities=9% Similarity=0.008 Sum_probs=109.1
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK----IYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g 280 (638)
+...|++.+|-..++++++..| .|...+.-.-.++.-.|+.+.-...+++.... ..+|.. .-..+.-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3457888888888899988776 67788888888888889988888888888754 223433 3334555666889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK---PDIVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~ 357 (638)
-+++|++.-++..+.+.. |...-.+..+.+...|++.++.++..+-...=-. .-...|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999888887654 7777788888888899999998877654321000 011122233444566688999999
Q ss_pred HHHHH
Q 006614 358 LFNKM 362 (638)
Q Consensus 358 ~~~~~ 362 (638)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88764
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=2.9 Score=43.74 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
+.+--+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-.++-.... ++.-|...+..|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 33444444555666666666555443 4555566666666666666665544433322 1344556666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
+.|+.++|..++.+.... . -...+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 667777777666654331 1 2345666666666666543
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.82 E-value=2.1 Score=42.01 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=77.5
Q ss_pred HHccCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHc---cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 006614 452 YGKAKR-YEAANELFLELKEYCGCSSARVYAVMI----KHFGK---CGRLSDAVDLFNEMKKLRCKPDV----YTYNALM 519 (638)
Q Consensus 452 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 519 (638)
+.+.|. -++|.++++.+.+- .+.|...-|.+. ..|.. ...+..-+.+-+-+.+.|++|-. ..-|-|.
T Consensus 389 lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 344444 66677777766653 122322222211 12211 12233344444445566776643 2344444
Q ss_pred HH--HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 520 SG--MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNT 587 (638)
Q Consensus 520 ~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 587 (638)
++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 43 4578999988766555554 6799999999999999999999999999976 567776664
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.13 Score=46.81 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=54.9
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHccCC
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VTYSALISAFGKLGR 246 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 246 (638)
+.+.|++.+|...|....+..+. -...++-.|...+...|++++|...|..+.+..+..|.. ..+..|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34555677777766666665321 233445556667777777777777777766655433332 556666666666666
Q ss_pred hHHHHHHHHHHHHC
Q 006614 247 DISAIRLFDEMKEN 260 (638)
Q Consensus 247 ~~~A~~~~~~m~~~ 260 (638)
.++|...|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.81 E-value=1.8 Score=41.12 Aligned_cols=162 Identities=9% Similarity=-0.021 Sum_probs=84.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHcCC-CHHHHHHHHHHhhhC--------CCCCCH----
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSV-------LSEIVNILGKAK-MVNKALSIFYQIKSR--------KCKPTA---- 195 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 195 (638)
.+.|+++.|..++.+........++.. +..+.....+.+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456666766666666544321222221 222233334444 777776666554322 122222
Q ss_pred -HHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 196 -NTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 196 -~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...++.+|...+.. ++|..+.+.+....+. ....+..-+..+.+.++.+++.+++..|+..- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 3455667777776654 4566677777665542 24445455666666788888888888888752 213334444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 006614 272 LVSIY---FKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 272 li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
+++.+ ... ....|...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44443 332 234555555555544444433
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.77 E-value=0.14 Score=50.34 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+.+...|+.+..+|.+.|++++|+..|+..++. .|+. .+|+.+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446789999999999999999999999998884 4543 35899999999999999999999998875
No 234
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.77 E-value=0.93 Score=46.26 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+..+...+...+.+...+.-|-++|..|-. ...++......+++++|..+-+...+ ..||+.- ...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~--pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYM--PYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccc--hHHH
Confidence 344555555556666777777788777643 23456677778888888888777654 2233321 1111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 436 (638)
.+....+.. ..-.+|.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFe-----------------------EAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFE-----------------------EAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHH-----------------------HHHHHHHHhcchHHHHHHHHHhhhh
Confidence 112222211 1224567778888888888877654
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.16 Score=46.20 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMI 202 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 202 (638)
.|+.-+. +.+.|++.+|...|..+++... .-.+..+.-|..++...|++++|..+|..+.+..+ +--++++--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5766655 4567889999999999998631 23457788899999999999999999999977632 22457788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
....+.|+-++|...|+++.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999874
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.71 E-value=0.3 Score=38.72 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=55.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHcc
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKL 244 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 244 (638)
.+++..|+.+.|++.|.+....- +-....||.-..++--+|+.++|++-+++..+..+. ... ..|..-...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-QTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHh
Confidence 34566677777777777766552 236666777777777777777777777776655432 111 1222233445556
Q ss_pred CChHHHHHHHHHHHHCC
Q 006614 245 GRDISAIRLFDEMKENG 261 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g 261 (638)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 67777777776666655
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.67 E-value=3 Score=42.64 Aligned_cols=133 Identities=8% Similarity=0.088 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
+...+..++.--....+.+.+..++..+... .|... -|......=.+.|..+.+.++|++-+..-+ -.+..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHH
Confidence 3344444444333333445555566665543 23322 334444444556666666666666655321 233334333
Q ss_pred HHHHH-ccCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 238 ISAFG-KLGRDISAIRLFDEMKEN-GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 238 ~~~~~-~~g~~~~A~~~~~~m~~~-g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..-++ ..|+.....+.|+...+. |..- ....|...|..-..++++.....+++..++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 33322 334555555555555543 2111 2334555555555556666666666665553
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.60 E-value=0.45 Score=38.95 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
+..+..-.....+.|++++|.+.|+.+..+-+ +-...+...++.+|.+.|++++|+..+++.++.++..|+ .-|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34444445556677888888888888887622 224556667888899999999999999999888876555 445555
Q ss_pred HHHHHc
Q 006614 238 ISAFGK 243 (638)
Q Consensus 238 ~~~~~~ 243 (638)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.67 Score=44.75 Aligned_cols=140 Identities=17% Similarity=0.080 Sum_probs=95.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
-.+.|.+.|++..|...|+++...= .+...-+ .+. .+..... -...+..+.-++.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~-~ee-~~~~~~~-------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFD-EEE-QKKAEAL-------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-------------hccccCC-HHH-HHHHHHH-------HHHHhhHHHHHHHhhh
Confidence 3456788899999999988875520 0111111 111 1111222 2345677888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH-HHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD-AVDLF 500 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 500 (638)
++..|++.-++.++.+ ++|......-..++...|+++.|...|+++.+. -+.|-.+-+.++.+-.+..+..+ ..++|
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 888888888899999999999999999999886 33445555666665555544433 35666
Q ss_pred HHHHh
Q 006614 501 NEMKK 505 (638)
Q Consensus 501 ~~m~~ 505 (638)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66644
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.55 E-value=0.23 Score=40.22 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
|..++..++.++++.|+.+....+++..-.- .++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567788888888888888888877665332 111000 0000 1122234566667777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+|+.+|++..|+++.+...+..+.+-+...|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777666665554445566666665444
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.55 E-value=0.36 Score=39.51 Aligned_cols=87 Identities=6% Similarity=-0.082 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+...+-.-.....+.|++++|.+.|+.+...- .+-...+-..++.+|.+.|++++|...+++..+..+..-...|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34445555666778999999999999988762 1234566777889999999999999999999988665555566666
Q ss_pred HHHHHhcCC
Q 006614 202 ILMLMQEGY 210 (638)
Q Consensus 202 ~~~~~~~g~ 210 (638)
+.+++.-..
T Consensus 89 ~~gL~~~~~ 97 (142)
T PF13512_consen 89 MRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHH
Confidence 666654433
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=0.35 Score=48.87 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=89.7
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 133 RCLDETRMIGVMWKSIQ--DMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+...-+++++++.+.+. +++. .......+.++..+.+.|..+.|+.+-. |+. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34445677777666554 1221 1224557777777788888888877622 322 23344566788
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
++.|.+..++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.++-.++.+
T Consensus 334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 87777764332 5667788888888888888888877766543 4556667777777777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 291 EMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 291 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
.....|- ++....++.-.|++++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 34444455556666666666544
No 243
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.48 E-value=2.6 Score=40.67 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
+...|+...|.++-++.. .|+...|...+.+++..+++++-.++... .-++.-|..++.++.+.|+..+|
T Consensus 187 li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 334444444444433331 24444444455555555555444433211 11233444455555555555555
Q ss_pred HHHHHH
Q 006614 497 VDLFNE 502 (638)
Q Consensus 497 ~~~~~~ 502 (638)
..+..+
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 544444
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.28 Score=47.28 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLV 273 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li 273 (638)
...++.+...+.+.+++.+|++.-+..+...+ +|+.....-..++...|+++.|+..|+++.+. .| |..+-+-|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 44567777788888888888888888888776 77888778888888888888888888888875 45 444455555
Q ss_pred HHHHhcCCH-HHHHHHHHHHHhC
Q 006614 274 SIYFKLGEV-EKALGLVQEMKGK 295 (638)
Q Consensus 274 ~~~~~~g~~-~~A~~~~~~m~~~ 295 (638)
.+--+...+ ++..++|..|...
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555544 3446777777653
No 245
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=1.9 Score=38.54 Aligned_cols=209 Identities=11% Similarity=0.087 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-...|.--..+|....+|+.|...+.+..+. ..+.. ..|.....++.|.-+..++.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~--yEnnr------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNR------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcc------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 4567777778888888888888877776541 11111 1223334456666666666654 223344666667
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHh
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN---G--LQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~~~~~~~~~~li~~~~~ 278 (638)
.|...|.++.|-..+++.-+. ...-+.++|++++.+...- + .+.-...+.....++.+
T Consensus 100 lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 777778777766666554321 1112333444444433211 0 00011223334445556
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccC
Q 006614 279 LGEVEKALGLVQEMKGK----GCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC---KPDIVLINNLINVLGRAG 350 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g 350 (638)
...+++|-..+.+-... .-.++ -..|...|-.+.-.+++..|.+.++.-.+.+- .-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 66665555444332211 11111 12344555566667778888887777544321 12445666666665 356
Q ss_pred CHHHHHHHHH
Q 006614 351 RLEDALKLFN 360 (638)
Q Consensus 351 ~~~~A~~~~~ 360 (638)
|.+++.+++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 6666655543
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.31 E-value=1.1 Score=46.08 Aligned_cols=82 Identities=17% Similarity=0.069 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCChHHHH
Q 006614 492 RLSDAVDLFNEMKKLRCKPDVYTYNAL-MSGMVRAGMIDDAYSLLRRMEEDGC---VPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..+.|.++++.+.+. -|+...|... ...+...|+.++|++.|++...... +.....+--+...+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 445555555555553 3444443322 2233445666666666665442110 011222223444455556666666
Q ss_pred HHHHHhhh
Q 006614 568 EIFTKMQH 575 (638)
Q Consensus 568 ~~~~~m~~ 575 (638)
+.|..+.+
T Consensus 326 ~~f~~L~~ 333 (468)
T PF10300_consen 326 EYFLRLLK 333 (468)
T ss_pred HHHHHHHh
Confidence 66666665
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.21 E-value=0.7 Score=46.75 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=87.5
Q ss_pred HHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHH
Q 006614 417 FCKTNRVEKAHLLLEEME-EKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 495 (638)
..-.++++.+.+..+.-. -..+ +......++..+-+.|-.+.|+++..+-.. -.....++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 344667777666654111 1111 244566777777777877777776544322 1334456777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 496 AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|.++.++. ++...|..|.......|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77665432 3566788888888888888888887776543 34455566777777766666666655
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 576 SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
.|- ++....++.-.|+.++..+++.+-
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 442 444444555567777766665543
No 248
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=1.6 Score=36.71 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=61.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHH--HHHHHccCC
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSAL--ISAFGKLGR 246 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~ 246 (638)
++.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-...+. |... -...| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhcccc
Confidence 45566677777777776665442222 1222334455667777777777776654433 3322 11111 122334455
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 247 DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+++.....+.+...|-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555555544433322333334444455555555555555555544
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.14 E-value=3.3 Score=39.88 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=62.1
Q ss_pred HHHHHHHHHHh--cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 006614 197 TYNSMILMLMQ--EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF--GKLGRDISAIRLFDEMKENGLQPTAKI--YT 270 (638)
Q Consensus 197 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~ 270 (638)
.|..|-.+++. .|+-..|.++-.+..+.-. .|....-.++.+- .-.|+++.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~lls--sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLS--SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 46666666554 4566666666555443211 3333333333332 2346666666666666652 22111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.|.-..-+.|..+.|...-+..-..-.. -...+...+...|..|+++.|+++.+.-..
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 1222223455555555555555444322 334555555566666666666666555443
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.14 E-value=1.6 Score=36.30 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=8.4
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 006614 518 LMSGMVRAGMIDDAYSLLRR 537 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~ 537 (638)
++..|.+.+-++++..++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 33444444444444444433
No 251
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.91 E-value=2.8 Score=39.92 Aligned_cols=130 Identities=15% Similarity=0.329 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--cC----CHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCCh
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQ--EG----YYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 247 (638)
+++...+++.|.+.|+.-+..+|-+....+.. .. ...+|.++|+.|.+..+. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677888888887777666553333322 22 245678888888876543 2344555555443 23332
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 248 ----ISAIRLFDEMKENGLQPTAK--IYTTLVSIYFKLGE--VEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 248 ----~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
+.+..+++.+.+.|+..+.. ....++...-.... ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34555566666655544322 22222222111111 23555666666666665555554443
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.98 Score=42.26 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=103.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHccCCHH
Q 006614 418 CKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY---CGCSSARVYAVMIKHFGKCGRLS 494 (638)
Q Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 494 (638)
-..|+..+|-..++++.+.- |.|..++...-++|...|+.+.-...++++... +.|....+-....-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35778888888888888763 778888888888888889888888888888764 22222333344455566788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHH
Q 006614 495 DAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV----PDINSHNIILNGLAKSGGPKRAMEIF 570 (638)
Q Consensus 495 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~ 570 (638)
+|.+.-++..+.+ +-|.-.-.++.+.+.-.|++.++.++..+-... .. .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9988888887764 345556666777777788888888876654432 11 00111222223345567888888888
Q ss_pred HHhh
Q 006614 571 TKMQ 574 (638)
Q Consensus 571 ~~m~ 574 (638)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 8744
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.73 E-value=1.7 Score=44.70 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH------HHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN------TYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDT 231 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 231 (638)
.+..++...+=.|+-+.+++.+.+..+.+--..+. .|+.++..++. ....+.|.++++.+.... |+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 45667777777788888888888776542111222 24444444443 456788999999998865 666
Q ss_pred HHHHHH-HHHHHccCChHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 232 VTYSAL-ISAFGKLGRDISAIRLFDEMKEN--GL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 232 ~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~--g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
..|... .+.+...|++++|++.|+..... .. +.....+--+.-.+.-.++|++|.+.+..+.+.+-- +...|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHH
Confidence 655443 45666779999999999876532 11 223445566777788899999999999999886432 33333333
Q ss_pred -HHHHHhcCCH-------HHHHHHHHHHHH
Q 006614 308 -IKGLGRAGRV-------EDAYGLFMNMLK 329 (638)
Q Consensus 308 -i~~~~~~g~~-------~~A~~~~~~~~~ 329 (638)
.-++...|+. ++|..+|.+...
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3345567777 888888888764
No 254
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.72 E-value=5.8 Score=40.63 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|+.++.---.....+.+..++..++.. .|.--.-|......-.+.|..+.+.++|++-... ++.++..|......
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 344555554444444445555566666542 2222233444444555667777777777776653 44566666655544
Q ss_pred HH-hcCCHhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 205 LM-QEGYYEKIHELYNEMCNEGN-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 205 ~~-~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++ ..|+.+...+.|+......+ ..-....|...|..-...++.....+++++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 34666667777777655322 2234455666666666777777777777777764
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.71 E-value=0.3 Score=44.33 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 006614 509 KPDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
+.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+=+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34566666666665532 455666667778888888888888888777654321 122221
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCC
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
+....--|= ..-+=++.++++|...|+-||..+-..|++++++.|.
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111111 1223467788888888888888888888888877664
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.65 E-value=3.4 Score=37.62 Aligned_cols=223 Identities=19% Similarity=0.133 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 006614 139 RMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIHE 216 (638)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 216 (638)
+....+...+......... ............+...+++..+...+...... ........+......+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555554442211 12455555666666666666666666665542 123345555556666666666777777
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 217 LYNEMCNEGNCFPDTVTYSALIS-AFGKLGRDISAIRLFDEMKENGL--QPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
.+......... +......... .+...|+++.|...+++...... ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 77766654432 1122222222 56666777777777766644211 0123333333444556666777777776666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 294 GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 294 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5432212455555666666666677777776666654222 123333333333455556666666666554
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=1.9 Score=39.98 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=107.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
.-...+...|++.+|..+|...+... +-+......++.+|...|+++.|..++..+....-.........-+..+.+..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 44556778999999999999988753 44567778889999999999999999999876532222233233455666666
Q ss_pred CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN--GLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 210 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
...+..++-.+... ++ .|...-..+...+...|+.++|++.+-.+.++ |. -|...-..|+..+.-.|.-+.+
T Consensus 218 ~~~~~~~l~~~~aa-dP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 218 ATPEIQDLQRRLAA-DP--DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCCCHHHHHHHHHh-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCHH
Confidence 66666666555554 32 47788888899999999999999887776654 33 3566777788888777744433
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=3.2 Score=37.22 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=104.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.|.....+|-...++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+.. .-+..|+.-...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls---Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS---EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Confidence 4555566777778888888776666532 111222121 1334555666666665532 2234566667778
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCC
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK---GC--ALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~g~ 316 (638)
...|..+.|-..+++.-+. ..+.++++|++++++.... +- ..-...+......+.+..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888887777766542 2344566666666654321 10 1112334455566777777
Q ss_pred HHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHH
Q 006614 317 VEDAYGLFMNMLKE----GCKPDI-VLINNLINVLGRAGRLEDALKLFNKMEALQ---CKPNVVTYNTVIKS 380 (638)
Q Consensus 317 ~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~ 380 (638)
+++|-..+.+-... .-.++. ..|-..|-.|.-..|+..|.+.++.--+.+ -.-+..+...|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 77776665543321 011121 234455556666778888888888743322 12234444555544
No 259
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.54 E-value=0.23 Score=46.03 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=54.7
Q ss_pred HHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006614 110 QFFKWAGRRRNFEH--NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 110 ~~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
.|+.|+..++..-. -..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 35556544432111 13455666666666666666666666666643 4455666666667777776666666666664
Q ss_pred h-----CCCCCCHHHHHHHHHH
Q 006614 188 S-----RKCKPTANTYNSMILM 204 (638)
Q Consensus 188 ~-----~~~~~~~~~~~~l~~~ 204 (638)
+ .|+.|...+......+
T Consensus 215 ~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 215 KTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHhhhhcCCCccHHHHHHHHHH
Confidence 4 3556666555544444
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.46 E-value=0.54 Score=42.79 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 439 PPCPAAYCSLINGYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
.-|..+|...+..+... +.++=....+..|.+.|+..|..+|+.|++.+-+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34455565555555432 344444455555555555555556555555432211 112111
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 006614 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGP 563 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 563 (638)
.-...+ -| -.+-+-++.++++|..+|+.||..+-..+++++.+.|-.
T Consensus 128 fQ~~F~-HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFL-HY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHh-hC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 11 122345788999999999999999999999999887754
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.5 Score=35.18 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=5.3
Q ss_pred CChHHHHHHHHHHH
Q 006614 139 RMIGVMWKSIQDMV 152 (638)
Q Consensus 139 ~~~~~a~~~~~~~~ 152 (638)
+.+......++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333333333333
No 262
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.37 E-value=3.9 Score=37.19 Aligned_cols=205 Identities=19% Similarity=0.133 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRS-TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
....+......+...+.+..+...+...... ........+......+...+++..+...+.........+ ........
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 3577888888999999999999998887752 245566677778888888889999999999998764443 22233333
Q ss_pred H-HHHhcCCHhHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 006614 203 L-MLMQEGYYEKIHELYNEMCNEGNC-FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKL 279 (638)
Q Consensus 203 ~-~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 279 (638)
. .+...|+++.|...|++.....+. ......+......+...++.+.+...+....+.. .. ....+..+...+...
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHc
Confidence 3 788999999999999999663320 1234445555555778899999999999998863 23 467788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++++.|...+......... ....+..+...+...+..+++...+.......
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999998876432 23444445555557778999999998888763
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.33 E-value=2.2 Score=34.16 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006614 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
......++.....|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 334555666777777777777777776544 67777777777888888888877777777777654
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.32 E-value=4.9 Score=38.13 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 268 IYTTLVSIYFKLGEV---EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 268 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
++..++.+|...+.. ++|.++++.+...... .+..+..-++.+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455566666665553 4455555555443322 2344444455555677777777777777765
No 265
>PRK11906 transcriptional regulator; Provisional
Probab=94.29 E-value=3.8 Score=40.82 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 105 INVKIQFFKWAGRRRNFEHN-STTYMALIRCLDE---------TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
...|+.+|..+.......|+ ...|..+.-++.. .....+|.++.+..++.+ +.|+.....+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 35677777777633333332 3344333333321 112223444444444432 344445555555444455
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+++.|..+|++....++. ...+|......+.-.|+.++|.+.+++..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555555555555544222 33344444444444555555555555544443
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.28 E-value=0.16 Score=32.12 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
++..+..+|.+.|++++|.++|+++++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344455555555555555555555555443
No 267
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.27 E-value=4.2 Score=37.06 Aligned_cols=184 Identities=10% Similarity=-0.015 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
+..|-.-+....+.|++++|.+.|+.+.+.. .+-...+...++-++.+.++++.|+...++.....+......|-..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444455556667899999999999988652 23345667777788889999999999999988774444444566666
Q ss_pred HHHHhc-------CC---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 203 LMLMQE-------GY---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 203 ~~~~~~-------g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
.+++.- .+ ..+|+.-|++++..- ||+.- ...|..-+..+... =...=..+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~Y-------------a~dA~~~i~~~~d~----LA~~Em~I 173 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSRY-------------APDAKARIVKLNDA----LAGHEMAI 173 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCcc-------------hhhHHHHHHHHHHH----HHHHHHHH
Confidence 666532 22 234555566666644 33221 11122211111110 00011235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|...-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 56677777777777777777765 2212 22344455667777777777665544443
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.25 E-value=3.2 Score=39.54 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH----hhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---CHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQ----IKSR-KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP---DTVT 233 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~----~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 233 (638)
++..+..+..+.|.+++++..--. ..+. .-..-..+|..+.+++-+--++.+++.+-..-.......| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 344455666677776666543211 1111 0011234455666666666667777666555443221112 1133
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC---C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKENGL---Q--PTAKIYTTLVSIYFKLGEVEKALGLVQEMKG----KGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~ 304 (638)
..++..++...+.++++++.|+...+.-- . ....++..|...|.+..++++|.-+..+..+ .++..-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44577788888899999999998875311 1 1245788999999999999998876655543 2322112223
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 305 TE-----LIKGLGRAGRVEDAYGLFMNMLK----EGCKP-DIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 305 ~~-----li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.. +.-++...|++..|.+..++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 32 34467788888888888887655 33221 12344567888999999999888887653
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.25 E-value=6.7 Score=39.37 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=87.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
.++.--.+.+++..-++...+.++ +.|+- ..|..+. --.+....+|+++|++..+.|- ..+ +.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~l--------g~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASL--------GK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhh--------ch
Confidence 445555667777777777777766 34432 2332221 1234457888888888766421 111 00
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.+......-+-+........+-...-..+...+-+.|+.++|++.+.+|.+.. ...+..+...|+..+...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 00111100111111111111223333456666668888888888888887542 11234466778888888888888888
Q ss_pred HHHHHHhCCCC-CCHHHHHHHH
Q 006614 288 LVQEMKGKGCA-LTVYTYTELI 308 (638)
Q Consensus 288 ~~~~m~~~~~~-~~~~~~~~li 308 (638)
++.+-.+...+ --..+|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 88886543222 1244566544
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.18 E-value=0.17 Score=32.07 Aligned_cols=28 Identities=4% Similarity=-0.002 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
++..+...|.+.|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=94.18 E-value=5.3 Score=39.86 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=95.6
Q ss_pred HHH--HHHHHHHHhc--C---CHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 006614 196 NTY--NSMILMLMQE--G---YYEKIHELYNEMCNEGNCFPD-TVTYSALISAFG---------KLGRDISAIRLFDEMK 258 (638)
Q Consensus 196 ~~~--~~l~~~~~~~--g---~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~m~ 258 (638)
..| ..++.+.... + ..++|+.+|.+........|+ ...|..+...+. ......+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554442 2 246788888888833222233 333333322221 1234456777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHH
Q 006614 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-DIV 337 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 337 (638)
+.+ +.|......+..+..-.++++.|...|++....++. ...+|....-.+.-.|+.++|.+.+++..+..+.- -..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 765 347777777777777777788888888888776544 45555555555667888888888888866653221 122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 006614 338 LINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
.....++.|+..+ .+.|.++|-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3333344565544 5666666544
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.12 E-value=5.1 Score=44.48 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHccCChHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT----YSALISAFGKLGRDIS 249 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~ 249 (638)
+++++|+.-+.++.. ..|.-.++.--+.|.+.+|+.++. |+... |.+....+...+.+++
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~---------~~~e~~k~i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYK---------PDSEKQKVIYEAYADHLREELMSDE 957 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheec---------cCHHHHHHHHHHHHHHHHHhccccH
Confidence 466777666555542 223334444456777888877753 44444 4444455556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY--TYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
|.-.|+..-+. .--+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+.
T Consensus 958 Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 958 AALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77777654331 23466777888888888888776542 1222 2255677778888888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 328 LKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 328 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
... . ...+..||+...+++|.++.....
T Consensus 1026 ~sd----~----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1026 LSD----P----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hcC----H----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 654 1 223455666677888877766543
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.07 E-value=3.1 Score=41.64 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
-..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344555666778888888888887754211 1234556677778888888888887777643
No 274
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.00 E-value=2.3 Score=33.98 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=70.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHccCC
Q 006614 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA---RVYAVMIKHFGKCGR 492 (638)
Q Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~ 492 (638)
+....|+.+.|++.|.+.+..- |..+..|+.-.+++.-.|+.++|++-+++..+......- ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4677899999999999888764 677889999999999999999999988888875443322 234444456777888
Q ss_pred HHHHHHHHHHHHhCC
Q 006614 493 LSDAVDLFNEMKKLR 507 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~ 507 (638)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877766
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.85 E-value=6 Score=37.73 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC----CHHHHHHHHHHhhhCCCC---CCHHHHHHHHHHHHhcCC--
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGK--AK----MVNKALSIFYQIKSRKCK---PTANTYNSMILMLMQEGY-- 210 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-- 210 (638)
++...+++.|.+.|...+..++.+..-.... .. ...+|..+|+.|++..+. ++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4666677788888877777666553333332 22 456789999999887432 222233333222 3333
Q ss_pred --HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 211 --YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 211 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
.+++...|+.+.+.|..+-|...+.+-+-+++.... +..+.++++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 356778888888877654555444444444443322 457888999999999998888877665554444443
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.48 E-value=4.2 Score=34.41 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH-HH-
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS-VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT-YN- 199 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~- 199 (638)
.+...|..-++ +++.+..++|+.-|.++.+.|...=+. ..-.......+.|+...|...|.++......|-+.- .-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556655554 467788889999999888776443222 233445566788999999999999877644443331 11
Q ss_pred -HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 200 -SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 200 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.-.-.+..+|.+++.....+-+...+.. --...-..|.-+-.+.|++..|.+.|+.+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1223456789999998888888766542 44556677888888999999999999988764
No 277
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.25 E-value=1.9 Score=32.70 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 56666777777788889988888889999999999999998888764 333443777777644
No 278
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.92 E-value=11 Score=37.81 Aligned_cols=182 Identities=9% Similarity=0.054 Sum_probs=124.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.|-....+++..++.+..+.-...+..+|+. ...+...+..++..|... ..+.-..+++++.+..+. |++.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34666778889999999999988889999988 557788899999999888 567788889988887554 55555556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFP-D---TVTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~ 276 (638)
...|-+ ++-+.+...|.++...-.... + ...|..+.... -.+.+.-+++..+... .|...-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 655554 888888888888876443101 1 12333333321 2456666666666653 34444555666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL 311 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 311 (638)
....++.+|++++..+.+.+-. |..+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8889999999999988776533 555555555443
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.87 E-value=2.1 Score=37.25 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH--HH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHN--II 553 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~--~l 553 (638)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.++......+++..+.....++...--.+ |...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666777777777777776666543333 2334555666666677776666666555421111 111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHHhh
Q 006614 554 LN--GLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 554 ~~--~~~~~g~~~~A~~~~~~m~ 574 (638)
.. .+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1234567777766666654
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=6.9 Score=35.00 Aligned_cols=26 Identities=4% Similarity=0.258 Sum_probs=16.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 593 SRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
...|++.+|+++|++.....+.-+..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHH
Confidence 44567777777777776554444333
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.69 E-value=0.93 Score=33.87 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 564 KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
=++.+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +..+..+|..+++-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 355566666666677777777777888888888888888887776643 233445666666543
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.68 E-value=6.7 Score=34.59 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
|.-+.+||-+.--+...|+++.|.+.|+...+..+. ...+...-.-++.-.|++.-|.+-|...-..++..|=...|--
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 344667888877788888888888888888887544 2233333334445578888888888777766542232233322
Q ss_pred HHHHHHccCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFD-EMKENGLQPTAKIYTTLVSIYF-KLGEVEKALGLVQEMKGKGCAL-------TVYTYTEL 307 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~-------~~~~~~~l 307 (638)
+. -..-+..+|..-+. +..+ .|..-|...|-.|. ..=..+. +++.+... -.- -..||--+
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~-a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERLKAD-ATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHHHhh-ccchHHHHHHHHHHHHHH
Confidence 22 23334555554333 3332 24444544333332 2111221 22222211 110 12355556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006614 308 IKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+.+...|+.++|..+|+-.+..
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 66677777777777777666554
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.65 E-value=1.5 Score=40.82 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKIYT 270 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~ 270 (638)
.++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|++.++.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3455566677777777777777777777665 5777777777777777777777777776654 36666655554
Q ss_pred HHHHH
Q 006614 271 TLVSI 275 (638)
Q Consensus 271 ~li~~ 275 (638)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44433
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.26 E-value=2.2 Score=37.10 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHHHHH--H
Q 006614 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYN--T 587 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~--~ 587 (638)
..+..+..-|++.|+.+.|.+.|.++.+....+. ...+-.+++.....|++..+...+.+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577888999999999999999999998754444 4456778888899999999999998887521111 221111 1
Q ss_pred HHH--HHHccCCHHHHHHHHHHHH
Q 006614 588 ILG--CLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 588 l~~--~~~~~g~~~~A~~~~~~m~ 609 (638)
... .+...|++.+|.+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2345789999998887765
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.85 E-value=0.41 Score=28.64 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777643
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.80 E-value=7.5 Score=33.17 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=17.8
Q ss_pred hhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
+.+.+++|+...+..+++.+.+.|++.....+
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34445556666666666666666665544333
No 287
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.70 E-value=16 Score=36.75 Aligned_cols=409 Identities=11% Similarity=0.091 Sum_probs=208.7
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHH
Q 006614 107 VKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQ 185 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 185 (638)
.-..+|+-+.. .|++|+..|...+.-+-+.+.+.++-.++.+|+... +.++..|..-......-+ +++.|..+|..
T Consensus 89 rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 89 RIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34555655543 457799999999999999999999999999998863 555666655544444433 48999999988
Q ss_pred hhhCCCCCCHHHHHHHHHHH---Hh------------cCCH----hHHHHHHHHHH-----hCCCCCCCHH---H-H---
Q 006614 186 IKSRKCKPTANTYNSMILML---MQ------------EGYY----EKIHELYNEMC-----NEGNCFPDTV---T-Y--- 234 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~---~~------------~g~~----~~A~~~~~~~~-----~~~~~~~~~~---~-~--- 234 (638)
-...++. ++..|-...+.- +. .++. +.....+.... ..+.. +... + -
T Consensus 166 gLR~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~-k~~e~~~~~~~d~ 243 (568)
T KOG2396|consen 166 GLRFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV-KSVELSVAEKFDF 243 (568)
T ss_pred HhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch-hhcchHHHHHHHH
Confidence 8877433 444444333221 10 0111 01111110000 00000 0000 0 0
Q ss_pred -----HHHHHHHHcc--C----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006614 235 -----SALISAFGKL--G----RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 235 -----~~l~~~~~~~--g----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
..+++..... + ..+.|.+.++-...... ..+...-....-.-+-+....+|++..+. -|+...
T Consensus 244 ~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl----~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 244 LKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDL----QHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhc----cchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 0011111110 0 12445555554443211 11111122222222233334666665543 235555
Q ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHH-HHHHHHHHHHHCCCCCChhhH
Q 006614 304 YTELIKGLGRAG------RVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRLE-DALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 304 ~~~li~~~~~~g------~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~p~~~~~ 374 (638)
|+..|..|...- .+..-..+|+.....+ ..+ ...-|..+.-.++..+... .|..+..+. ..-+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 555555544322 3444455555555432 222 2334555555555554433 333333232 23455555
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHH--HHHHHHHHHhCCCCCCHH-HHHHHH
Q 006614 375 NTVIKSLFESKA-PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR-VEK--AHLLLEEMEEKGFPPCPA-AYCSLI 449 (638)
Q Consensus 375 ~~ll~~~~~~~~-~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~--A~~~~~~~~~~~~~~~~~-~~~~li 449 (638)
..-+........ ..-....+|......-..+....|+... .|+ ... -..++......+ .++.. .-+.++
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l 467 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHH
Confidence 555544443322 2222233334444433333334444433 122 111 112233333443 33333 345677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---ccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 006614 450 NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG---KCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA 525 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~ 525 (638)
+.+.+.|-.++|...+..+... .+++...|..+|..-. .+| ...+..+++.|... | .|+..|.-.+.--...
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccC
Confidence 7778888888888888888876 6677888888776532 333 77788888887654 5 6777777777666688
Q ss_pred CChHHHHHHHHHHHH
Q 006614 526 GMIDDAYSLLRRMEE 540 (638)
Q Consensus 526 g~~~~A~~~~~~m~~ 540 (638)
|..+.+-.++.++.+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 888888887777665
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.57 E-value=7.9 Score=33.01 Aligned_cols=102 Identities=17% Similarity=0.282 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+++..+.+.|++|+...+..+++.+.+.|++... ..+.+.++-+|.......+-.+. +....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 35556666778888888888888888888876544 44445566566655554443222 2334445544444443
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 331 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
= ...+..++..+...|++-+|.++.+..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 113455667777888888888887765
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.27 E-value=0.48 Score=28.33 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888854
No 290
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=26 Score=38.64 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVR 153 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (638)
-|..|+..|...|++++|.+++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888889999999999999988876
No 291
>PRK09687 putative lyase; Provisional
Probab=90.40 E-value=16 Score=34.58 Aligned_cols=203 Identities=14% Similarity=0.072 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHcCCCCc
Q 006614 406 SPFTYSILIDGFCKTNRV----EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY-----EAANELFLELKEYCGCSS 476 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~ 476 (638)
|...-...+.++.+.|+. +++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444445555666666652 4566777666443 45666666666666655421 223333333222 245
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-MIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 555 (638)
..+-...+.++.+.++ ++|...+-.+.+ .+|...-...+.++.+.+ +...+...+..+... +|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 6666677788888877 456666666665 345555555555665543 245677777777753 57777778888
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
++.+.|+. .|...+-+..+.+ + .....+.++...|.. +|...+.++.+. .||..+-...+++|.+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 89888884 6666666666542 2 234677889999985 788888888853 4588888888888764
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.28 E-value=30 Score=37.34 Aligned_cols=193 Identities=14% Similarity=0.062 Sum_probs=98.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC--CC------CHHHHHHHHHHHHccCCHHHHHHHHH--------HHHHcCCCCcHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGF--PP------CPAAYCSLINGYGKAKRYEAANELFL--------ELKEYCGCSSARVY 480 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~--~~------~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~ 480 (638)
.+-.+++.+|...++++.+..- ++ .+..+....-.+...|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 4457889999999998875421 11 12333334444556799999999997 44444444555444
Q ss_pred HHH----HHHHHccCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHHcC--ChHHHHHHHHHHHHCC---CCC
Q 006614 481 AVM----IKHFGKCGRLSD--AVDLFNEMKKL-RCKP--DVYTYNAL-MSGMVRAG--MIDDAYSLLRRMEEDG---CVP 545 (638)
Q Consensus 481 ~~l----i~~~~~~g~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~m~~~~---~~p 545 (638)
..+ |..+......++ +..+++.+... .-.| +..++..+ +.++.... ...++...+.+..+.- ...
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 332 112222223333 67777766542 1122 23333333 33333222 2234444444333211 111
Q ss_pred C---HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCC--CHHHHHH-----HHHHHHccCCHHHHHHHHHHHHh
Q 006614 546 D---INSHNIILNGLAKSGGPKRAMEIFTKMQHS-EIKP--DAVSYNT-----ILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 546 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+ ..+++.+...+. .|+..+..+........ .-.| ....|.. +...+...|+.++|.....+...
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 223333333344 67777766555553321 1112 3345633 33446778999999988877653
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.22 E-value=28 Score=36.94 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHH--HH-HHccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALI--SA-FGKLGRDISAIRLFDEMKE-------NGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g 280 (638)
...|.++++...+.|. ........++ .+ +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~--~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567777777776654 2222222222 22 3355677777777777766 44 3335555666666532
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 006614 281 -----EVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG----RAG 350 (638)
Q Consensus 281 -----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g 350 (638)
+.+.|..++.+.-+.|.+ +...+-..+..... ..+...|.++|....+.|.. ..+-.+..+|. ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 566777777777776643 44333332222222 24567788888777777643 22222222222 234
Q ss_pred CHHHHHHHHHHHHHCC
Q 006614 351 RLEDALKLFNKMEALQ 366 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~ 366 (638)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5677777777776655
No 294
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.08 E-value=2.1 Score=32.07 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-++.+-++.+...+..|++.+..+.++++-+-+++..|.++|+.++.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 367777888888888999999999999999999999999999988754 2224556666553
No 295
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.03 E-value=31 Score=37.19 Aligned_cols=48 Identities=19% Similarity=0.125 Sum_probs=26.6
Q ss_pred HcCChHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 006614 524 RAGMIDDAYSLLRRMEEDGC-VP-----DINSHNIILNG--LAKSGGPKRAMEIFT 571 (638)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~-~p-----~~~~~~~l~~~--~~~~g~~~~A~~~~~ 571 (638)
-.+++..|...++.+.+..- .| ....+..++.| +...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45777777777777765311 11 12222223333 345577888888886
No 296
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.01 E-value=4 Score=31.05 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-+..+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 66677777778888899999999999999999999999999988765 2222226666554
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.89 E-value=0.4 Score=28.22 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHH
Q 006614 194 TANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A 214 (638)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 445555555555555555544
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.87 E-value=11 Score=31.76 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.1
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 006614 487 FGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~ 505 (638)
+...|++.+|.++|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3344555555555555443
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.79 E-value=9.3 Score=39.18 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
...+.++..+.++|..++|+++ .+|... -.....+.|+++.|.++..+. .+..-|..|..+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA-------NSEVKWRQLGDA 675 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHHH
Confidence 4556666667777776666654 122221 123345567777777665554 445567777777
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. | ...-+|...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHH
Confidence 7777777777777765544 335566666666666555555555555432 2 222345566777777
Q ss_pred HHHHHH
Q 006614 321 YGLFMN 326 (638)
Q Consensus 321 ~~~~~~ 326 (638)
.+++..
T Consensus 741 ~~lLi~ 746 (794)
T KOG0276|consen 741 LELLIS 746 (794)
T ss_pred HHHHHh
Confidence 666644
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.77 E-value=13 Score=32.41 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=46.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
...+..+|++++|..-++.....-.+ ....+-..|.+.....|++++|+..++.....+. .......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHHc
Confidence 34455666666666666665543110 0111122344555666666666666665544221 222233334556666
Q ss_pred CChHHHHHHHHHHHHC
Q 006614 245 GRDISAIRLFDEMKEN 260 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~ 260 (638)
|+-++|+.-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666666554
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.51 E-value=41 Score=37.90 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 006614 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 413 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
.+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+.... ....+..||+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 345566666666666666555321 1111 1245666677777777777777766543 33445566777
Q ss_pred CCHHHHHHHHHHHH
Q 006614 491 GRLSDAVDLFNEMK 504 (638)
Q Consensus 491 g~~~~A~~~~~~m~ 504 (638)
..+++|+++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77777777665443
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.20 E-value=25 Score=37.84 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+|--+.+.|.+++|.++..+...... .....+...+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~--~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQ--KIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS---TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhc--chhHHHHHHHHHHHhC
Confidence 355666677777777777755544332 4445566666666554
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.19 E-value=7.8 Score=33.72 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=64.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGP-----SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
-+-+.++|++.+|..-|...+.. |++.+ ..|..-..++.+.+.++.|+.-..+..+.++. ...+...-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 45567888999999988888875 44433 23444455677888888888888777776433 3333344456777
Q ss_pred hcCCHhHHHHHHHHHHhCCC
Q 006614 207 QEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~ 226 (638)
+...+++|++-|.++....+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 78888888888888887654
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=2 Score=39.92 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
.|.+++..+-...+..-....+++++...+-.+.... ..++.. -..+++.+.+ -++++++.+...=...|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 4556666666666666666677777777776654421 111111 1223333333 3667888888887888888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+++.+++.+.+.+++.+|..+.-.|.....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777766544
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.64 E-value=8.1 Score=36.16 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 006614 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR---CKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 547 (638)
.+.+..+...++..-....+++++...+-+++..- ..|+ .++|..+ +-.-+.++++.++..=++.|+-||.
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccch
Confidence 34444455555555555566777777766665431 1111 2222222 2223556777777776777777777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006614 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
.+++.+++.+.+.+++.+|.++...|+..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777776666543
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.49 E-value=14 Score=31.15 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=9.3
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 006614 205 LMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~ 223 (638)
++..|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
No 307
>PRK09687 putative lyase; Provisional
Probab=87.81 E-value=25 Score=33.32 Aligned_cols=217 Identities=16% Similarity=0.120 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH----HHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV----NKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
+..+....+.++...|. +++...+..+.. .+++..-...+.++++.|+. .++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44455555555555554 233333333333 34556666666666666653 3566666655333 34555555
Q ss_pred HHHHHHHhcCC-----HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 200 SMILMLMQEGY-----YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 200 ~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
..+.++...+. ..++.+.+...... ++...-...+.++.+.|+ .+|...+-.+.+. +|..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD----KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC----CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 55555554432 12334444333332 344555566666666665 4555655555542 34455555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 275 IYFKLG-EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 275 ~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
++.+.+ ....+...+..+... ++...-...+.++.+.|+ ..|...+-...+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 555442 133455555555532 355556666666666666 34555555554432 2 223455556666663
Q ss_pred HHHHHHHHHHH
Q 006614 354 DALKLFNKMEA 364 (638)
Q Consensus 354 ~A~~~~~~~~~ 364 (638)
+|...+..+.+
T Consensus 252 ~a~p~L~~l~~ 262 (280)
T PRK09687 252 TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHh
Confidence 45555555544
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.71 E-value=1.5 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+|..+...|...|++++|+..|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666666777777777777777666644
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.68 E-value=18 Score=31.52 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=42.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS-----ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
...+...|++++|...++..... |....+. .|.+.....|.+|+|+..++...+.++ .......-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 34556666677776666665542 2222222 233444455555555555555443321 112222233445
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006614 277 FKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~ 295 (638)
...|+-++|..-|++..+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 5555555555555555544
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.30 E-value=0.3 Score=40.93 Aligned_cols=129 Identities=14% Similarity=0.151 Sum_probs=77.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGG 562 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 562 (638)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 456666777777777788877766545567777778888888777777777766111 1222345666677777
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCc
Q 006614 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 563 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
+++|..++.++-... ..+..+...++++.|.+++.+ .++...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 777777766653211 011112344555555533332 34577888888888877654
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.81 E-value=1 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHH
Q 006614 229 PDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
.+...|+.+...+...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455555555555555555543
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.61 E-value=2 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|..+...+.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666543
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.52 E-value=35 Score=33.62 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
....+|..++..+.+.|.++.|...+..+...+... ++.....-++.+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888888899999999998888887754211 233444455667778888888888888777
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.16 E-value=13 Score=38.31 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.-+.++.-+-++|..++|++ +.+|+.-.. ....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~---------~s~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE---------LSTDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh---------cCCChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45566666777777766654 334443322 34467889999988766543 6778999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006614 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
+.|++..|.+-|..... |..|+-.+...|+.+....+-....+.|. .|....+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHH
Confidence 99999999999988755 45667777777877665555555565552 234455677899999999
Q ss_pred HHHHHH
Q 006614 287 GLVQEM 292 (638)
Q Consensus 287 ~~~~~m 292 (638)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 888654
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.97 E-value=20 Score=31.53 Aligned_cols=73 Identities=5% Similarity=0.042 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR---KCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
++|.+.|-.+...+.--++.....++..|. ..+.++|+.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766666667777777776666 45788888888887654 33678888999999999999988875
No 316
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.90 E-value=97 Score=38.14 Aligned_cols=320 Identities=10% Similarity=0.021 Sum_probs=167.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
.+..+-.+.+.+.+|...++.-.... .......+..+...|+..++++....+...-.. .|+.. .-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl~---~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSLY---QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccHH---HHHHHHHh
Confidence 45556667888888888887741110 011223344455588888888888887764221 12222 23444567
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT-LVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~ 286 (638)
.|++..|..-|+.+...++ +...+++.+++.....|.++..+-..+-...+ ..+....+++ =+.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p--~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP--DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC--ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 8999999999999988775 55778888888888888887777765555443 2233333433 234446777777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHH--HHHHHhc--CCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHccCCHH
Q 006614 287 GLVQEMKGKGCALTVYTYTEL--IKGLGRA--GRVEDAYGLFMNMLKEGCKP---------DIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~l--i~~~~~~--g~~~~A~~~~~~~~~~~~~p---------~~~~~~~li~~~~~~g~~~ 353 (638)
..+. .. +..+|... +....+. .+.-.-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~---- 1607 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL---- 1607 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----
Confidence 6654 22 22223222 2222221 12111112333332221110 011223332222111
Q ss_pred HHHHHHHHHHHC----CCCCChhhHHHHHHH---HHhcCChHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 006614 354 DALKLFNKMEAL----QCKPNVVTYNTVIKS---LFESKAPASEASAWFEKMKAN-GVL-PSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 354 ~A~~~~~~~~~~----~~~p~~~~~~~ll~~---~~~~~~~~~~~~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~ 424 (638)
+-....+..... ...-+...|...+.. ..+...+--+.++.+.....+ +.. --..+|....+.....|+++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 111111111110 011112222222221 122111111111111111111 111 12467778888888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 006614 425 KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYC 472 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 472 (638)
.|...+-+..+.+ -+..+.-.+..+...|+...|..++++..+..
T Consensus 1688 ~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9988877777665 34566667778889999999999999988653
No 317
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.74 E-value=1.4 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.|..+..++.+.|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666653
No 318
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.35 E-value=1.5 Score=25.56 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=15.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+|..+..++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666553
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.22 E-value=2.3 Score=26.06 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666667777777777776666543
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.17 E-value=14 Score=32.52 Aligned_cols=81 Identities=19% Similarity=0.058 Sum_probs=62.3
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCC
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 246 (638)
.+.+.|+ +.|.+.|-++...+.--++.....+...|. ..+.++++.++....+.... .+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3555554 778899999888766667777666666665 77899999999888754321 3789999999999999999
Q ss_pred hHHHH
Q 006614 247 DISAI 251 (638)
Q Consensus 247 ~~~A~ 251 (638)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 321
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.10 E-value=57 Score=34.79 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhCC----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRR----------------NFEHNSTTYMALIRCLDETRMIGVMWKSIQD 150 (638)
Q Consensus 106 ~~a~~~f~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (638)
.....+++|+-+.. ...+++.-|+ .+..+.-.|.++.|.+++..
T Consensus 114 ~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 114 PVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45777888883222 2334578887 67788888999999998853
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.99 E-value=33 Score=31.99 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHhHH
Q 006614 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-----KGFEYDQITYS 621 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 621 (638)
++.....|..+|.+.+|.++.++....+ +.+...|..++..+...|+--+|.+-++++.+ .|+..|..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445566777777777777777776542 23555666777777777776666665555532 36665555443
No 323
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=84.41 E-value=61 Score=34.57 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=0.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 593 SRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+.|++.+|.+.+-.+.+.++-|...-...|.++.
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp -----------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 35588888888888888777778776655555543
No 324
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.28 E-value=30 Score=30.79 Aligned_cols=177 Identities=15% Similarity=0.039 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
|-..-|.--|.+.....++ -+..||.+.--+...|+++.|.+.|+...+.++. ...+...-.-++.--|++.-|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--chHHHhccceeeeecCchHhhHHH
Confidence 3333444444444444222 4567899998999999999999999999987652 222222222233356899999888
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 006614 254 FDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKG-LGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 254 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~ 330 (638)
|....+.. -.|-...|-.++. ..-++.+|..-+ +...+. |..-|...|-. |...=..+ .+++.++..
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 77776653 1222233333332 344566665444 444333 43444333322 22221112 233333322
Q ss_pred CCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 331 GCKPD-------IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 331 ~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
-.-+ ..||--+...+...|+.++|..+|+-...
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111 35778888899999999999999998776
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.85 E-value=2.7 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 583 VSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887664
No 326
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.85 E-value=50 Score=33.12 Aligned_cols=88 Identities=9% Similarity=0.005 Sum_probs=43.9
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.+...|+++.+...+...... +.....+..++++...+.|++++|...-+.|+.... .+...........-..|-+|
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEI--EDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcccc--CChhheeeecccHHHHhHHH
Confidence 344556666666655444332 112334455556666666666666666666655443 23333333233333445555
Q ss_pred HHHHHHHHHHH
Q 006614 249 SAIRLFDEMKE 259 (638)
Q Consensus 249 ~A~~~~~~m~~ 259 (638)
++.-.++++..
T Consensus 409 ~~~~~wk~~~~ 419 (831)
T PRK15180 409 KSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHhc
Confidence 56555555544
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.80 E-value=6.1 Score=37.35 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=31.2
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKP-TANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+-|.++|.+++|+..|..-... .| |++++..-..+|.+..+|..|..-.+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455666666666666555443 22 566666666666666666655555555444
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.58 E-value=24 Score=30.35 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|++|.+.|++..... |+...|+.-+.... +|-+++.++.+.+
T Consensus 96 F~kA~~~FqkAv~~~---P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDED---PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcC---CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 445555555555443 56666655555442 2555555555443
No 329
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.24 E-value=56 Score=33.16 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=68.5
Q ss_pred CCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHhhh-CCCCCCHHH
Q 006614 509 KPDVYTY-NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA--KSGGPKRAMEIFTKMQH-SEIKPDAVS 584 (638)
Q Consensus 509 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~-~~~~p~~~~ 584 (638)
.|+..|+ +.++..+.+.|-..+|...+..+... .+|+...|..++..=. ..-+..-+..+++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 4666554 45677777888888999999888876 3567777777765422 12237778888888876 45 56777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|--.+.--...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77766666677887777777666554
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.95 E-value=69 Score=34.03 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=56.2
Q ss_pred cCCCHHHHHHHHHHhhh-------CCCCCCHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 172 KAKMVNKALSIFYQIKS-------RKCKPTANTYNSMILMLMQEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+.+.|...|....+ .| ......-+..+|.+.. +.+.|+.+|.+....+. |+...+...+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 44566666666666655 33 2234444555555432 44556666666666554 45444433333
Q ss_pred HHHc-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCC
Q 006614 240 AFGK-LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF----KLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 240 ~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~ 296 (638)
.... ..+...|.++|....+.|. ...+-.+..+|. -..+.+.|..++.+..+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 3222 2345566666666665552 222222222221 1224555555555555555
No 331
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.73 E-value=9.6 Score=30.28 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+..+-++.+....+.|++.....-+++|.+.+++..|.++++-.+.+ +.+....|..+++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~el 128 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKEL 128 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHHH
Confidence 34455555666677788888888888888888888888888777654 344444566666543
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.58 E-value=27 Score=29.03 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=9.1
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 006614 205 LMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~ 223 (638)
++..|++++|+.+|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444555555555554444
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.47 E-value=13 Score=33.00 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=26.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+..+.+.++..+|+...++-.+..+ .|......++..+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444455555555555555444443 34444444555555555555554444433
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.35 E-value=13 Score=32.95 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHH
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILM 204 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 204 (638)
.+.-++.+.+.+..++++...++-++. .+.+...-..++..++-.|++++|..-++-..+.. ..+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445567778888888888888887775 35566677778888888888888888777766552 23345566666654
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.06 E-value=47 Score=33.50 Aligned_cols=37 Identities=5% Similarity=-0.118 Sum_probs=23.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
.|...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 455667777777777766654 3446666666666654
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.93 E-value=3.3 Score=23.64 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..++.+.|++++|.+.|+++.+..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455555666666666666666543
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.92 E-value=28 Score=30.50 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 006614 453 GKAKRYEAANELFLELKEYCGCSS----ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGM 527 (638)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 527 (638)
.+.|++++|..-|..++....+.. ...|..-..++.+.+.++.|+.--.+..+.+ |+ ......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 334444444444444444322211 1223333344555555555555555555443 21 1111122334555566
Q ss_pred hHHHHHHHHHHHHC
Q 006614 528 IDDAYSLLRRMEED 541 (638)
Q Consensus 528 ~~~A~~~~~~m~~~ 541 (638)
+++|++-|+++++.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.64 E-value=10 Score=35.86 Aligned_cols=91 Identities=8% Similarity=-0.119 Sum_probs=63.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
.+-|.++|.|++|+++|...+. ..| ++.++..-..+|.+...+..|..-.+.....+ ..-..+|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3457889999999999988766 344 88888888889999988888777666655441 1123344445555555667
Q ss_pred HhHHHHHHHHHHhCC
Q 006614 211 YEKIHELYNEMCNEG 225 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~ 225 (638)
..+|.+-++..+...
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 777777777777654
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.49 E-value=67 Score=31.63 Aligned_cols=65 Identities=14% Similarity=-0.014 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP---PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
...+|..+...+.+.|+++.|...+.++...+.. ..+.....-+..+...|+.++|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777788888888888888888887764321 1345555556677778888888888877776
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.89 E-value=1.2e+02 Score=33.48 Aligned_cols=226 Identities=17% Similarity=0.111 Sum_probs=120.9
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAK-------IYTTLVS-IYFKLGEVEKALGLVQEMKGK----GCALTVYTYTELIK 309 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~ 309 (638)
...+++++|..+++++...--.|+.. .++.|-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35688999999888876542222221 2333322 233578889998888777654 22335666777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHHccCCH--HHHHHHHHHHHHCC--CC----CChhhHHH
Q 006614 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN---L--INVLGRAGRL--EDALKLFNKMEALQ--CK----PNVVTYNT 376 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l--i~~~~~~g~~--~~A~~~~~~~~~~~--~~----p~~~~~~~ 376 (638)
+..-.|++++|..+..+..+..-.-++..+.. + ...+...|+. .+....|....... -+ +-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999988877766422333333322 2 2345556633 23333333332211 11 12234444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 006614 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPP----CPAAYCSLIN 450 (638)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~ 450 (638)
++.++.+......++...++.-......|-...+ ..|+.+....|+.++|...+.++......+ +..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4555554322222223333322222222222222 367788888999999999998887543222 2222222222
Q ss_pred H--HHccCCHHHHHHHHHH
Q 006614 451 G--YGKAKRYEAANELFLE 467 (638)
Q Consensus 451 ~--~~~~g~~~~A~~~~~~ 467 (638)
. ....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2345777777666555
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.82 E-value=22 Score=30.61 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-----------DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+++|+.-|++.+..+| ....++..+..++...+. +++|.+.|++..+. .|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 3455566666666554 344566666666554332 34455555555543 577777776666543
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006614 280 GEVEKALGLVQEMKGKG 296 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~ 296 (638)
+|-++..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 3555555555543
No 342
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.54 E-value=0.77 Score=38.42 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=30.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344555556666666666666655444456666666666666655555555554
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.01 E-value=4.6 Score=25.45 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 006614 553 ILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.48 E-value=3.9 Score=22.14 Aligned_cols=10 Identities=10% Similarity=-0.260 Sum_probs=3.6
Q ss_pred HcCCCHHHHH
Q 006614 171 GKAKMVNKAL 180 (638)
Q Consensus 171 ~~~g~~~~A~ 180 (638)
...|++++|.
T Consensus 12 ~~~G~~~eA~ 21 (26)
T PF07721_consen 12 LAQGDPDEAE 21 (26)
T ss_pred HHcCCHHHHH
Confidence 3333333333
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.41 E-value=68 Score=30.08 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=40.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
++...+.|..+|.+.+|.++.+...... +.+...+-.|+..+...|+--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455566777788888888777777653 4466777777778888777666666665553
No 346
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.18 E-value=8.1 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+|..+...|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666666553
No 347
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.90 E-value=33 Score=26.19 Aligned_cols=9 Identities=22% Similarity=0.062 Sum_probs=3.5
Q ss_pred CCCHHHHHH
Q 006614 173 AKMVNKALS 181 (638)
Q Consensus 173 ~g~~~~A~~ 181 (638)
.|++++|..
T Consensus 52 rG~Yq~Al~ 60 (115)
T TIGR02508 52 RGDYQSALQ 60 (115)
T ss_pred cchHHHHHH
Confidence 334444433
No 348
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.61 E-value=10 Score=24.41 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=25.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 006614 592 LSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 626 (638)
..+.|-.+++..++++|.+.|+..+...|..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34667777777788888778887777777777654
No 349
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=77 Score=30.22 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH----
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKM----EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP---- 407 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~---- 407 (638)
...+.....-||+.||.+.|.+.+.+. ...|.+.|++.+..-+..++...+......+..+.+.+.|..-+-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345666777899999999988877665 445778888888777766665555544445555666666654332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 408 FTYSILIDGFCKTNRVEKAHLLLEEMEE 435 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 435 (638)
.+|..+- +....++.+|-.+|-+...
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 2232221 2345677888888776654
No 350
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.08 E-value=69 Score=29.52 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 174 KMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
.++++|+.-|+++.+....-.. .+...++....+.|++++..+.|.+++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3566666666666554222122 223334555555666666555555553
No 351
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.75 E-value=8.6 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=19.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677777778888888887777664
No 352
>PRK10941 hypothetical protein; Provisional
Probab=74.39 E-value=45 Score=31.34 Aligned_cols=61 Identities=10% Similarity=-0.067 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+-.+|.+.++++.|+++.+.+....+. ++.-+.--.-.|.+.|.+..|..-++..++..+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 3344455555555555555555554322 444444444555555555555555555554443
No 353
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.00 E-value=1.4e+02 Score=32.23 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=52.0
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKP---TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
++.+.+.+.+++|+..-+..... .+ -...+..+|..+.-.|++++|-...-.|.. .+..-|...+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhcc
Confidence 34556666666666665554433 22 233455566666666777766666666654 344555555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
.+...... .-+.......+...|..++..+..
T Consensus 436 ~~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 436 LDQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccchhh---ccCCCCCcccCchHHHHHHHHHHH
Confidence 54433222 222222112344455555555544
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.69 E-value=40 Score=25.74 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
.++|..+-+-+...+-. ....-.+-+..+...|+|++|..+.+.+ ..||...|.++. -.+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34555554444443211 1122222334566777777777766665 257777766653 3566776666666666
Q ss_pred HHhCCCCCCHHhH
Q 006614 608 MNAKGFEYDQITY 620 (638)
Q Consensus 608 m~~~~~~p~~~~~ 620 (638)
|...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66555 3433333
No 355
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.09 E-value=1.5e+02 Score=32.08 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=67.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 134 CLDETRMIGVMWKSIQDMVRSTCVM---GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
=+.+.+.+++|+++.+.-.. ..+ -......++..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 365 Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 35677888888888775433 233 3456677788888889999999888888765 67777777777777776
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
......+ +. .++...+...|..++..+..
T Consensus 439 l~~Ia~~---lP-t~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LP-TGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CC-CCCcccCchHHHHHHHHHHH
Confidence 5543332 22 23322456677777777765
No 356
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.04 E-value=4.4 Score=32.63 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 592 LSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+.+.|.-.+|..+|++|++.|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3455677788888888888888887 567777665
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.99 E-value=5.3 Score=22.77 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=12.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444455555555555555555443
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.94 E-value=1.6e+02 Score=32.41 Aligned_cols=227 Identities=15% Similarity=0.015 Sum_probs=119.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHH-HHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKGKGCALTV-------YTYTEL-IKGLGRAGRVEDAYGLFMNMLKE----GCKPDIVLINNLI 343 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li 343 (638)
.....++++|..++.++...-..|+. ..++.+ .......|++++|.++.+..... -..+.+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34578899999998887654222221 123333 22345678999999988887764 2334566777788
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-----HHHhcCChHHH-HHHHHHHHHhC---CCC---CCHHHHH
Q 006614 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK-----SLFESKAPASE-ASAWFEKMKAN---GVL---PSPFTYS 411 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-----~~~~~~~~~~~-~~~~~~~m~~~---~~~---~~~~~~~ 411 (638)
.+..-.|++++|..+.....+..-.-++..+..... .+...|...-+ ....|...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999999888766533344444333221 12333421111 01122222211 001 1122333
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HHHHHHHH
Q 006614 412 ILIDGFCKT-NRVEKAHLLLEEMEEKGFPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSS----ARVYAVMI 484 (638)
Q Consensus 412 ~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li 484 (638)
.+..++.+. +...++..-++-.......+-.. .+..|+......|+.++|...++++......+. ...-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 444444441 11222222222222221111111 233677888889999999999998876533332 11111122
Q ss_pred --HHHHccCCHHHHHHHHHH
Q 006614 485 --KHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 485 --~~~~~~g~~~~A~~~~~~ 502 (638)
......|+...|.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 223456777777766655
No 359
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.92 E-value=98 Score=31.39 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=61.8
Q ss_pred HHccCCHHHHHHHHHHHH---hCCC--CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCC-----
Q 006614 487 FGKCGRLSDAVDLFNEMK---KLRC--KPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE-------DGCVPD----- 546 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~---~~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~----- 546 (638)
+.-.|++.+|.+++...- ..|. .|. -..||.|.-...+.|.+..+..+|.++++ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344566666666665431 1121 111 11234444444555666666666665553 344432
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 006614 547 ------INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594 (638)
Q Consensus 547 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 594 (638)
..+||. .-.|...|++-.|.+.|.+.... +.-++..|-.+..+|..
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233443 33567889999999999988762 45688899999988864
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.83 E-value=9.7 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=15.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 006614 518 LMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
+..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666654
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.49 E-value=26 Score=36.04 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=57.3
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
...|+...|...+.......+.-.-+..-.+...+.+.|...+|-.++.+.+.... ....++..+.+++....+++.|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS--SEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--cCchHHHhcchhHHHHhhhHHH
Confidence 34566666666555554332222233334455555566666666666666655442 4455666666666666666667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 251 IRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
++.|++..+.. +-+..+-+.|...-|
T Consensus 696 ~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 76666666542 224555555555444
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.93 E-value=97 Score=28.97 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...-|.++++.+++.+++...-+--+.--+.-+.....-|-.|.+.|++..+.++-........- .+...|..++..|.
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyL 164 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYL 164 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHH
Confidence 34455667777777776665444322211223344444455667777777777776666553211 22333544443333
Q ss_pred -----ccCChHHHHHHH
Q 006614 243 -----KLGRDISAIRLF 254 (638)
Q Consensus 243 -----~~g~~~~A~~~~ 254 (638)
-.|.+++|.++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 345666665554
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.26 E-value=32 Score=27.53 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+..+-+..+...+..|++.+....++++-+-+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555666666778888888888888888888888888888888765
No 364
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.10 E-value=1e+02 Score=28.89 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPTAKIYTT-LVSIYFKLGEVEKALGLVQEMKGKGCA 298 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~ 298 (638)
.....+..+...|++.++.+.+.+...+..+ .|.+.|+..... |.-.|....-.++.++..+.|.++|..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3455667777888888888777776655443 355444433222 222233333356677777777777654
No 365
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.98 E-value=1.1e+02 Score=29.04 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcCChHHH
Q 006614 548 NSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A 566 (638)
.+|.-|+.++|..|+.+-+
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 3456667777777765543
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.39 E-value=63 Score=30.10 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc---
Q 006614 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK--- 489 (638)
Q Consensus 413 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 489 (638)
=|++++..+++.++....-+--+..-+..+...-.-|-.|.|.+....+.++-..........+..-|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 36777777888777665544433222333455555566677788777777777776664333344446666655543
Q ss_pred --cCCHHHHHHHH
Q 006614 490 --CGRLSDAVDLF 500 (638)
Q Consensus 490 --~g~~~~A~~~~ 500 (638)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 47777777666
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.35 E-value=1.1e+02 Score=28.90 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH-----HHhCCCCCC
Q 006614 543 CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS-EIKPDAVSYNTILGCLSRAGMFEEAARLMKD-----MNAKGFEYD 616 (638)
Q Consensus 543 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-----m~~~~~~p~ 616 (638)
-.++..+...++..+++.+++.+-.++++..... +..-|..-|..+|+.....|+..-..+++++ +.+.++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3455555566666666666666666666665543 3344556666666666666665555555443 233344545
Q ss_pred HHhHHHHHHHHh
Q 006614 617 QITYSSILEAVG 628 (638)
Q Consensus 617 ~~~~~~l~~~~~ 628 (638)
...-..|-+.+.
T Consensus 278 ~~L~~~L~~LF~ 289 (292)
T PF13929_consen 278 DELRSQLSELFK 289 (292)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 368
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.86 E-value=96 Score=28.15 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=12.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 006614 274 SIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..-...+++.+|+++|++....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666665544
No 369
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.62 E-value=72 Score=26.62 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006614 313 RAGRVEDAYGLFMNMLKEGCK-PDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
..++.+++..+++.|.--.+. +...++. ...+...|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665543221 1122222 22345566666666666666553
No 370
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.38 E-value=72 Score=26.54 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 338 LINNLINVLGRAGRLEDALKLFNKMEALQC-----KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 412 (638)
..|.++......+.+...+.+++.+..... ..+...|+.++.+........-+...+|.-+.+.+.+.++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666667777777777766632110 134456667776665555445555666677776666667777777
Q ss_pred HHHHHHhc
Q 006614 413 LIDGFCKT 420 (638)
Q Consensus 413 li~~~~~~ 420 (638)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77665444
No 371
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.35 E-value=1.9e+02 Score=31.40 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..-...+..+++.+++.....++.. .+.+...-.....++...|+.++|.+....+-..|. ......+.++..
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~--~~p~~cd~l~~~ 172 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK--SLPNACDKLFSV 172 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CCChHHHHHHHH
Confidence 3444455556666666666653211 133555556666777777887777777777766555 344455555555
Q ss_pred HHccCCh
Q 006614 241 FGKLGRD 247 (638)
Q Consensus 241 ~~~~g~~ 247 (638)
+.+.|.+
T Consensus 173 ~~~~g~l 179 (644)
T PRK11619 173 WQQSGKQ 179 (644)
T ss_pred HHHcCCC
Confidence 5544443
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.03 E-value=1.1e+02 Score=28.37 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIV---LINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
+.++|+.-|++.++........ ....++..+.+.+++++..+.+.++
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4555555555555432221222 2334455566666666666666555
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.76 E-value=18 Score=26.15 Aligned_cols=16 Identities=6% Similarity=0.189 Sum_probs=6.9
Q ss_pred HHHHHHHhcCChHHHH
Q 006614 552 IILNGLAKSGGPKRAM 567 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~ 567 (638)
.++.+++..|++.+++
T Consensus 48 ~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 48 YLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 374
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.97 E-value=2e+02 Score=31.11 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHhhhC
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-------MVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~ 189 (638)
..| .+|=-|.|.|.+++|.++..+.... .......+...+..|.... .-++...-|++....
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 466 5566678999999999999554332 3455567777788876643 223555666666554
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.38 E-value=12 Score=20.40 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
.|..+...+...|++++|...|+...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3445555666666666666666665543
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=63.81 E-value=59 Score=33.64 Aligned_cols=101 Identities=12% Similarity=-0.001 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 125 STTYMALIRCLDE-TRMIGVMWKSIQDMVRSTCVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+..+...|.+ .|+..+|...+....-...+. .....-++...+-++|...+|--++............. +-.+.
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n-~y~l~ 290 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSN-YYTLG 290 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccccc-ceeHH
Confidence 3455666677765 678888888877655421111 12345667777888888877777765554432111111 44566
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+++..|.+...+.-|+...+.++
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~~p 314 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQARP 314 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhccCc
Confidence 777777777777777777776654
No 377
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.54 E-value=1.8e+02 Score=29.82 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006614 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 343 (638)
.|.....+++..+..+..+.-...+..+|..-|- +-..|..++.+|..+ ..+.-..+|+++.+..+. |++.-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 3666677788888888888888888888887653 667788888888877 567778888888877554 555556666
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHH
Q 006614 344 NVLGRAGRLEDALKLFNKMEALQCK-----PNVVTYNTVIKSLFESKAPASEASAWFEKMK-ANGVLPSPFTYSILIDGF 417 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~~~~li~~~ 417 (638)
..|-+ ++...+...|.++..+=+. .--..|.-+... -++..+....+...+. ..|...-...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh---ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 66655 7777777777776543211 001123333221 1222222233333332 233333445555566778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 418 CKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG 453 (638)
Q Consensus 418 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (638)
....++.+|++++..+.+.+ ..|..+-..++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88899999999999888776 555655555555443
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.39 E-value=32 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 578 IKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 578 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..|++.+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357777777777777777777777777777764
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.26 E-value=1.4e+02 Score=28.42 Aligned_cols=158 Identities=12% Similarity=0.060 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----C-
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA-----G- 526 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g- 526 (638)
+..+|.++|....+.|.. .....|...|.. ..+..+|...|++..+.|..+...+...+...|... -
T Consensus 92 ~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 456666666655554332 222223333333 336677777777777666333222233333333322 1
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC-----
Q 006614 527 -MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAG----- 596 (638)
Q Consensus 527 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----- 596 (638)
+...|...|.++...+ +......+...|.. ..+.++|...|++..+.|. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2236777777777765 44444444444432 2367788888888877664 22222222 444444
Q ss_pred ----------CHHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 006614 597 ----------MFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 597 ----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
+...|...+......+..........+-
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 279 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALK 279 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 7888888888888887777776666333
No 380
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.79 E-value=1.5e+02 Score=28.48 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCH----
Q 006614 231 TVTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPTAKIYTTLVSIYF-KLGEVEKALGLVQEMKGKGCALTV---- 301 (638)
Q Consensus 231 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~---- 301 (638)
...+......||+.|+.+.|.+.+.+..+ .|.+.|+..+..-+..+. ...-..+-++..+.+.+.|...+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 34555666778888888888777765543 355666665544333332 222234445555555555543332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 302 YTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
.+|..+ .+....++.+|-.+|-+...
T Consensus 184 KvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 184 KVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 122221 12334556666666655543
No 381
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.48 E-value=52 Score=33.44 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=8.7
Q ss_pred HHHHHhcCCHhHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELY 218 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~ 218 (638)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34445566665544444
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.62 E-value=1.9e+02 Score=29.33 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCC
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKI--YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY--TYTELIKGLGRAGR 316 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~ 316 (638)
.+..|+.+- ++.+.+.|..|+... ..+.++..+..|+.+ +.+.+.+.|..|+.. ....-+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344555543 444455676665433 334555566667664 334444556544432 11233445556676
Q ss_pred HHHHHHHH
Q 006614 317 VEDAYGLF 324 (638)
Q Consensus 317 ~~~A~~~~ 324 (638)
.+....++
T Consensus 81 ~~~v~~Ll 88 (413)
T PHA02875 81 VKAVEELL 88 (413)
T ss_pred HHHHHHHH
Confidence 65544433
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=61.53 E-value=22 Score=25.77 Aligned_cols=48 Identities=8% Similarity=0.105 Sum_probs=36.5
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHH
Q 006614 558 AKSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLM 605 (638)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 605 (638)
....+.++|+..|+...+.-..|. ..++..++.+++..|++.+++++-
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788999999999887433322 346778899999999999988753
No 384
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.19 E-value=21 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
|-.-.-.+|.+|.+.|++++|.++.+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344456666666666666666665544
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.16 E-value=1.5e+02 Score=27.76 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=65.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHcCCCH--------HHHHHHHHHhhhCCCCCCHHH
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMV----RSTCVMGPSVLSEIVNILGKAKMV--------NKALSIFYQIKSRKCKPTANT 197 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~ 197 (638)
.-+..+.+.|++..+-++..-++ +.+.+++......++..+...+.- +.|++.- + .......++..
T Consensus 15 ~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~L 92 (260)
T PF04190_consen 15 SGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHH
T ss_pred HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHH
Confidence 34445556666665555443332 234455555555555555443321 1222222 0 11123347777
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
+..+...|.+.|++.+|...|-.-.. ++...+..++..+...|...++ |...-. .+-.|.
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~~~~-----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL 152 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLLGTD-----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYL 152 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHTS-H-----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCC-----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHH
Confidence 88888888888888888776643211 3333332233333333333222 111111 223355
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 006614 278 KLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~ 295 (638)
-.++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888777766644
No 386
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=59.91 E-value=2.7e+02 Score=30.56 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL---GKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
-+...++.||..+.+.|+++.....-..|.+. .+.++..|-..+.-. ...+...++..+|++..... .++..|.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHH
Confidence 35677888999999999999888887777764 456666666555443 33467778888888877652 2444444
Q ss_pred HHHHHHH-------hcCCHhHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 006614 200 SMILMLM-------QEGYYEKIHELYNEMCNEGNCFPD-----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK 267 (638)
Q Consensus 200 ~l~~~~~-------~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 267 (638)
-.+.-+. +.+.++....+|.+.++.-+..-+ ...|.-+-..|...-+.++...+|..-...+ .|..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhh
Confidence 4444333 245677777888877653221111 1122222223333333455555555555443 2333
Q ss_pred HHHHHHHHHHhc-------CCHHHHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 268 IYTTLVSIYFKL-------GEVEKALGLV-------QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 268 ~~~~li~~~~~~-------g~~~~A~~~~-------~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+-+.=..-..+. .+++.|.+-+ ....+.. .+--..|..+|+-+-+.|+.-.-..+++++...
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 322222222211 1222222222 2222211 122345556666666777766655555555543
No 387
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.78 E-value=1.8e+02 Score=28.39 Aligned_cols=118 Identities=10% Similarity=0.073 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCChHHHHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR---AGMIDDAYSLL 535 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 535 (638)
+.-+.+++++.+. .+.+......++..+.+..+.++..+.++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3344455555544 33445555555555555555555555555555542 1234445444443332 12334444444
Q ss_pred HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006614 536 RRMEED------GC------VPD-----INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 536 ~~m~~~------~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
.+.++. +. .++ ...+..+...+.++|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 433321 11 011 11222333345577888888888887777544
No 388
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.25 E-value=1.6e+02 Score=27.79 Aligned_cols=85 Identities=5% Similarity=0.001 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh-----hhCCCCCC
Q 006614 508 CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM-----QHSEIKPD 581 (638)
Q Consensus 508 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m-----~~~~~~p~ 581 (638)
..++..+...++..+++.+++.+-.++|+..... +..-|...|..+|+...+.|+..-...+.++- ++.++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 4567777888888889999999999988887765 55668888889999999999987666666552 23455555
Q ss_pred HHHHHHHHHHH
Q 006614 582 AVSYNTILGCL 592 (638)
Q Consensus 582 ~~~~~~l~~~~ 592 (638)
...-..+-+.+
T Consensus 278 ~~L~~~L~~LF 288 (292)
T PF13929_consen 278 DELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHH
Confidence 55444443333
No 389
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.44 E-value=77 Score=23.84 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
|...-..+...+...|++++|++.+-++.+......+...-..++..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 55566666666777777777777777666655432344444444444444443
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.14 E-value=27 Score=30.94 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
.|++.++..++.++...|+.++|.++..++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555443
No 391
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.25 E-value=27 Score=23.99 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.+...++++.++... -|-.---.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~R---HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR---HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444321 2333344556666666666666666666553
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.82 E-value=2e+02 Score=27.93 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=20.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006614 339 INNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 339 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
+..+.....+.|..+.|..+++.+.+.++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33444455678999999999998887654
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.78 E-value=1.1e+02 Score=29.45 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCH
Q 006614 519 MSGMVRAGMIDDAYSLLRRMEED---GCVPDINSHN--IILNGLAKSGGPKRAMEIFTKMQH-----SEIKPDA 582 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~ 582 (638)
+...-+.++.++|+++++++.+. --.|+.+.|. ...+.+...||.+++.+.+++..+ .++.|++
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 33444556777777777777643 2234555443 334455566777777777776665 3555544
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.50 E-value=64 Score=24.42 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+.......|++++|.+.+++.++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444455566777777666666543
No 395
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.31 E-value=98 Score=24.10 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
....++|.-+..|....++. ...+-..-+..+..+|+|++|. ..- .....||...|.++ +-.+.|.-+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~AL---l~~-~~~~~pdL~p~~AL--~a~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEAL---LLP-QCHCYPDLEPWAAL--CAWKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHHH---HHH-TTS--GGGHHHHHH--HHHHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHHH---Hhc-ccCCCccHHHHHHH--HHHhhccHHHHHH
Confidence 34567888888898877742 4455556667778888888882 111 12235555555444 4457787788888
Q ss_pred HHHHhhhCC
Q 006614 182 IFYQIKSRK 190 (638)
Q Consensus 182 ~~~~~~~~~ 190 (638)
.+.++...|
T Consensus 91 ~l~rla~~g 99 (116)
T PF09477_consen 91 RLTRLASSG 99 (116)
T ss_dssp HHHHHCT-S
T ss_pred HHHHHHhCC
Confidence 777776654
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.63 E-value=1e+02 Score=24.15 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEE 435 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 435 (638)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888999999999888876
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.74 E-value=88 Score=27.14 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhCCCCCC--HHH-----HHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 176 VNKALSIFYQIKSRKCKPT--ANT-----YNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+.|+.+++.+.+.-..|. ... --..+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4677888877766522221 011 11234567788888888888888877
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.32 E-value=64 Score=21.36 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
+.-++.+.|+++.|.+..+.+.+. .|+......|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 455667777777777777777663 35554444433
No 399
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.13 E-value=3.8e+02 Score=30.17 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=20.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLG 312 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 312 (638)
.|++....+-+...++.+....-.++....+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34455555556666666655444445555555555444
No 400
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.95 E-value=2e+02 Score=26.96 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 334 PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~l 413 (638)
-|......+...|.+.|++.+|...|-.-.+ |+...+..++..+...+...+. |... ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~---------------dlfi-~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA---------------DLFI-ARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H---------------HHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch---------------hHHH-HHH
Confidence 3667778888889999999888876643221 3333332233333333332222 2222 223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006614 414 IDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~~~~~~~ 436 (638)
+-.|...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33466778888888887766544
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.74 E-value=1.9e+02 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=21.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 519 MSGMVRAGMIDDAYSLLRRMEEDGCVPDIN-SHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
+.++.+..+++.+..--.+.++ +.||.. ..-.+..++.....+++|+..+++.
T Consensus 51 alchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 51 ALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344444444444444444433 223322 1222333334444444444444444
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.54 E-value=2.5e+02 Score=28.17 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=10.6
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 006614 134 CLDETRMIGVMWKSIQDMVRS 154 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~ 154 (638)
.+...++|..|.+++.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 334455555555555555443
No 403
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.74 E-value=6e+02 Score=32.08 Aligned_cols=150 Identities=9% Similarity=0.049 Sum_probs=87.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHh----hhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 165 EIVNILGKAKMVNKALSIFYQI----KSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.+..+-.+++.+.+|...+++- ++. ......|-.+...|..-+++|....+...-... |+ ...-|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~s---l~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PS---LYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----cc---HHHHHHH
Confidence 4455666778888888888773 221 112333444555788888888777766541111 22 2334445
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL-IKGLGRAGRVED 319 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 319 (638)
....|++..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++.+ +.+--+.++++.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhh
Confidence 566788888888888888764 2336677777777777777777766555444332 2233333332 333355666665
Q ss_pred HHHHHH
Q 006614 320 AYGLFM 325 (638)
Q Consensus 320 A~~~~~ 325 (638)
......
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 555443
No 404
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.41 E-value=56 Score=21.02 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=14.5
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
+.|-.+++..++++|.+.|+..+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444555555555555544444444443
No 405
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.03 E-value=1e+02 Score=22.98 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=14.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
.|+.+.|.+++..+. .|.. .|..++.++...|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKEG----WFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCc
Confidence 344455555554444 3222 34444444444444
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.79 E-value=1.5e+02 Score=24.78 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 582 AVSYNTILGCLSRAGM-FEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
...|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..+++++.+.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 3445555555544433 233445555555555555555566666555543
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.28 E-value=92 Score=23.54 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 006614 588 ILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+.......|++++|...+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455667888888777777664
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.94 E-value=1.4e+02 Score=27.39 Aligned_cols=60 Identities=7% Similarity=0.049 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHhhh
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK-AKMVNKALSIFYQIKS 188 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 188 (638)
..+++..-+.|+++++...++.+...+...+..-.+.+..+|-. -|....+++++..+..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34677788889999999999988887777777777777666632 3455666666666544
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.80 E-value=1.4e+02 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=8.0
Q ss_pred HHHHHHHHHHccCChHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
.|......+...|++++|.++|
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3333333333333333333333
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.38 E-value=1.2e+02 Score=23.56 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=12.5
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 579 KPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
.||...|.++ +-.+.|--+++...+.++.
T Consensus 68 ~pdL~p~~AL--~a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 68 YPDLEPWAAL--CAWKLGLASALESRLTRLA 96 (116)
T ss_dssp -GGGHHHHHH--HHHHCT-HHHHHHHHHHHC
T ss_pred CccHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 3444444443 2334555555555555444
No 411
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.42 E-value=2.3e+02 Score=28.39 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=25.6
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAK--IYTTLVSIYF--KLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 295 (638)
..+++..|.++|+.+.++ ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555555555555554 333332 3333333333 344566666666665543
No 412
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.73 E-value=67 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+..++.+.|++++|.+..+.+++..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4456666777777777777766654
No 413
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=46.92 E-value=2.2e+02 Score=25.71 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 587 TILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
.+.....+.|++++|.++|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3444455667777777777776653
No 414
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.79 E-value=2e+02 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
-...|.....|.+.|.++.|+.++++
T Consensus 181 Cqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 181 CQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34455666667777777777776663
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.21 E-value=53 Score=31.04 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=14.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCC
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKENGL 262 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 262 (638)
+..|....+.||+++|++++++..+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555555443
No 416
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=46.13 E-value=2.7e+02 Score=26.47 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~ 332 (638)
.|...+.++-..+ +......+...|.. ..+.++|...|....+.|.
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 5555555555554 22333333333322 3355666666666666554
No 417
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.88 E-value=1.2e+02 Score=28.25 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=35.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKE----NG-LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~----~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+--++.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455666666666666666666532 22 23344555666677777777777666655543
No 418
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.63 E-value=44 Score=33.64 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=52.4
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 168 NILGKAKMVNKALSIFYQIKSRKCKPTANT-YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
+.+.+.+.++.|..+|.+..+. .||... |..-..++.+.+++..|+.=+..+++..+ .-...|-.=..++.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP--~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP--TYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc--hhhheeeeccHHHHhHHH
Confidence 3344555666666666666665 333332 33333566666666666666666666442 222333333344445555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 247 DISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
+.+|+..|+.... +.|+..-....++
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHH
Confidence 5666666665554 3455444444443
No 419
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.56 E-value=2.9e+02 Score=26.72 Aligned_cols=88 Identities=16% Similarity=0.052 Sum_probs=57.8
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 168 NILGKAKMVNKALSIFYQIKSRK---CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
+-|.+..++..|...|.+-.+.. ...+.+.|+.-..+-...|++..|+.-....+...+ .....|-.=..++...
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P--~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP--THLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc--chhhhhhhhhHHHHHH
Confidence 66777888888888887765543 233556677777777777888888888888777654 3344444444455555
Q ss_pred CChHHHHHHHHHH
Q 006614 245 GRDISAIRLFDEM 257 (638)
Q Consensus 245 g~~~~A~~~~~~m 257 (638)
.++++|.+..++.
T Consensus 167 e~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 167 ERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHhhh
Confidence 5666666555544
No 420
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.32 E-value=2.1e+02 Score=25.17 Aligned_cols=18 Identities=50% Similarity=0.685 Sum_probs=14.5
Q ss_pred HccCCHHHHHHHHHHHHh
Q 006614 593 SRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~ 610 (638)
.+.|+++.|.++++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467899999988887764
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.04 E-value=57 Score=32.88 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHH
Q 006614 415 DGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLS 494 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 494 (638)
+.+...+.++.|..++.+.++.. +.+...|..-..++.+.+++..|+.=+..+++.. +.....|-.-..++.+.+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHH
Confidence 34556778888888888888764 3344444444477778888888887777777653 122222333334445556677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 495 DAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 495 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
+|+..|+.... +.|+..-....++-|-
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 77777777665 3577666665555543
No 422
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.50 E-value=1.8e+02 Score=23.95 Aligned_cols=67 Identities=7% Similarity=0.043 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 159 GPSVLSEIVNILGKAK---MVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+..+-..+..++.+.. ++.+-+.+++.+.+. ......+....+.-++.+.+++++++.+.+.+.+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3334444444444433 334455566666542 222233333445566777777777777777777654
No 423
>PF13006 Nterm_IS4: Insertion element 4 transposase N-terminal; InterPro: IPR024473 This entry represents the N-terminal domain of Insertion Element 4 transposases [].
Probab=44.30 E-value=1.4e+02 Score=22.90 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=57.0
Q ss_pred HHHhhcccCChHHHHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 006614 82 ALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS 161 (638)
Q Consensus 82 ~l~~~~~~~~~~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (638)
.+..+...+.+.++.+++...+... .+.+.++....+|..+.-++.+...+.+.++-+...+..+......
T Consensus 5 ~l~~l~~~ip~e~I~~al~~tg~a~---------~R~R~LPa~~vVwlvlamaLfr~~s~~~V~~~L~~~L~~~~~~~~~ 75 (98)
T PF13006_consen 5 SLGVLTRVIPPELIDEALAATGRAT---------IRRRRLPAEVVVWLVLAMALFRDESYEEVVRRLDIGLPGGAEWPFP 75 (98)
T ss_pred hHHHHHHhCCHHHHHHHHHHhCchH---------hcCccCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCcCccccCCC
Confidence 3455556678888888776544322 2356677888999999999999999999999998887752222333
Q ss_pred HHHHHHHHHHcCC
Q 006614 162 VLSEIVNILGKAK 174 (638)
Q Consensus 162 ~~~~l~~~~~~~g 174 (638)
+-+++..+=.+.|
T Consensus 76 a~SaitqARqRLG 88 (98)
T PF13006_consen 76 APSAITQARQRLG 88 (98)
T ss_pred ChHHHHHHHHHcC
Confidence 3444545544444
No 424
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=43.72 E-value=5.2e+02 Score=29.10 Aligned_cols=70 Identities=13% Similarity=-0.060 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCC
Q 006614 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA-LQCKPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~ 386 (638)
.++-.+.|.++.+.--.-|..++..-...+...|++..+.+++.++.+ .+-.++-..|..++..+-..|-
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 444556666666542233556666666677778888888888877755 3455666666655554444443
No 425
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=43.62 E-value=1.6e+02 Score=23.36 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=37.2
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC------------------CCCHHHHHHHHHHHHh
Q 006614 217 LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGL------------------QPTAKIYTTLVSIYFK 278 (638)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~------------------~~~~~~~~~li~~~~~ 278 (638)
.|..+.......|...+...+...++-.. ..|..++.+|.+.|. .+-...+...+..+..
T Consensus 5 ~y~~L~~~~~~~~~~vtl~elA~~l~cS~--Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~ 82 (115)
T PF12793_consen 5 QYQRLWQHYGGQPVEVTLDELAELLFCSR--RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLE 82 (115)
T ss_pred HHHHHHHHcCCCCcceeHHHHHHHhCCCH--HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHH
Confidence 34444433333355556666665554332 236667777776541 1112334445555566
Q ss_pred cCCHHHHHHHHH
Q 006614 279 LGEVEKALGLVQ 290 (638)
Q Consensus 279 ~g~~~~A~~~~~ 290 (638)
.|+++.|.++++
T Consensus 83 ~g~~~~a~~ll~ 94 (115)
T PF12793_consen 83 QGKYEQALQLLD 94 (115)
T ss_pred cCCHHHHHHHHH
Confidence 666666666655
No 426
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.59 E-value=3.7e+02 Score=27.33 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 245 GRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
++.+.|+..+..|.+.|..|....-..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56666666666666666555433333333
No 427
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.37 E-value=26 Score=28.38 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=9.9
Q ss_pred CChHHHHHHHHHhhhCCCCCC
Q 006614 561 GGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 561 g~~~~A~~~~~~m~~~~~~p~ 581 (638)
|.-.+|..+|++|.+.|-.||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 344444555555555444443
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.15 E-value=1.9e+02 Score=23.82 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
|.-++.+.+++++++++++.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444555555555555544443
No 429
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.82 E-value=3e+02 Score=26.01 Aligned_cols=98 Identities=9% Similarity=0.093 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH----
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKM----EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP---- 407 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~---- 407 (638)
...+..+...|++.++.+.+.++.++. ...|.+.|+....+-+...+......+...+..+.|.+.|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 345555666666666666666555443 233445555444444433333333333334445555555543221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 408 FTYSILIDGFCKTNRVEKAHLLLEEMEE 435 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 435 (638)
.+|.-+- +....++.+|-.++.+...
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 1221111 2233456666666666543
No 430
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=42.78 E-value=5.1e+02 Score=28.72 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=20.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 006614 588 ILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILE 625 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 625 (638)
.....-+..+...++..|..|....++ ..|...+++
T Consensus 794 ~~~~l~~lr~~a~~i~~~a~~I~yRmp--s~t~~rL~~ 829 (835)
T KOG2168|consen 794 SETKLDRLRDQARAIVMMAAMIPYRMP--SQTNSRLVQ 829 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCC--hHHHHHHHH
Confidence 334444555667778888888755433 335555544
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.25 E-value=1.5e+02 Score=31.42 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChH------HHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 517 ALMSGMVRAGMIDDAYSLLRRMEED--GCVPDINSHNIILNGLAKSGGPK------RAMEIFTKMQHSEIKPDAVSYNTI 588 (638)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~~~~~l 588 (638)
+|+.+|...|++..+.++++.+... |-+.-...+|..++.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999999875 22333567888899999998753 3444444443 45578888888
Q ss_pred HHHHHc
Q 006614 589 LGCLSR 594 (638)
Q Consensus 589 ~~~~~~ 594 (638)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766554
No 432
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.11 E-value=2.8e+02 Score=25.49 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHccCChHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTA-NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VTYSALISAFGKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 249 (638)
....+..|+..|.+.... .|++ .-|..-+..+.+..+++.+..--....+.. ||. ....-+...+.....+++
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~---~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD---PNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC---hHHHHHHHHHHHHHHhhccccH
Confidence 344566666666655554 4444 334555566666677776666666555543 333 233344455556666777
Q ss_pred HHHHHHHHHH----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 250 AIRLFDEMKE----NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 250 A~~~~~~m~~----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
|+..+.+..+ ..+.+-......|..+--+.-...+..++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7777766533 22333344445554444333344444444443
No 433
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.00 E-value=44 Score=32.07 Aligned_cols=88 Identities=24% Similarity=0.170 Sum_probs=44.0
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~ 286 (638)
.|.+++|++.|...+..++ +....|..-.+.+.+.++...|++=++...+. .||. .-|-.--.+..-.|++++|.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred CcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4555666666665555544 44445555555555555555555555555443 2221 12222222233355666666
Q ss_pred HHHHHHHhCCCCC
Q 006614 287 GLVQEMKGKGCAL 299 (638)
Q Consensus 287 ~~~~~m~~~~~~~ 299 (638)
..+....+.+..+
T Consensus 203 ~dl~~a~kld~dE 215 (377)
T KOG1308|consen 203 HDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHhccccH
Confidence 6666666555443
No 434
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.97 E-value=50 Score=31.21 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhH
Q 006614 579 KPDAVS-YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITY 620 (638)
Q Consensus 579 ~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 620 (638)
.||..+ |+..|....+.||+++|++++++..+.|+.--..||
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 344433 446666677777777777777777766655444444
No 435
>PRK10941 hypothetical protein; Provisional
Probab=41.35 E-value=3.1e+02 Score=25.84 Aligned_cols=60 Identities=15% Similarity=-0.003 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 411 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
+.+-.+|.+.++++.|+.+.+.+.... |.++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 445567788888999998888888875 667777777777788888888888887777765
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=40.62 E-value=5.2e+02 Score=28.19 Aligned_cols=356 Identities=8% Similarity=-0.055 Sum_probs=171.8
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 117 RRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
+.++.+.....-...+..+.+.+++.+..+.+.. .+.+...--....+....|+.++|......+-..|.. .+.
T Consensus 91 ~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~ 164 (644)
T PRK11619 91 ANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPN 164 (644)
T ss_pred HCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CCh
Confidence 4555555555556666777777888776663321 2445555566667777888888787777777555433 566
Q ss_pred HHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH---------CCCCCC
Q 006614 197 TYNSMILMLMQEGYYE--KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE---------NGLQPT 265 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---------~g~~~~ 265 (638)
.++.++..+.+.|.+. ...+-++.+...+. ...-..+...+. . +.....+.+..+.+ ..++++
T Consensus 165 ~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~----~~lA~~l~~~l~-~-~~~~~a~a~~al~~~p~~~~~~~~~~~~~ 238 (644)
T PRK11619 165 ACDKLFSVWQQSGKQDPLAYLERIRLAMKAGN----TGLVTYLAKQLP-A-DYQTIASALIKLQNDPNTVETFARTTGPT 238 (644)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHhcC-h-hHHHHHHHHHHHHHCHHHHHHHhhccCCC
Confidence 7777777777666543 33344444444332 222222222110 0 00000001111100 011223
Q ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006614 266 AKIYTTLVSIY--FKLGEVEKALGLVQEMKGKG-CALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340 (638)
Q Consensus 266 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 340 (638)
...-..++.++ ....+.+.|..++....... ..+. ...+..+.......+...+|...++...... .+.....
T Consensus 239 ~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e 316 (644)
T PRK11619 239 DFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLE 316 (644)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHH
Confidence 21112122222 23445688888888764432 2211 2233344433334433566777776654332 2444455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 420 (638)
.-+....+.++++.+...+..|.... .-......-+-+++...|+..++ ..+|+..... .+ -|..+.. .+.
T Consensus 317 ~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A-~~~~~~~a~~---~~--fYG~LAa--~~L 387 (644)
T PRK11619 317 RRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEA-EEILRQLMQQ---RG--FYPMVAA--QRL 387 (644)
T ss_pred HHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHH-HHHHHHHhcC---CC--cHHHHHH--HHc
Confidence 55556668888888888888874422 22333344445555556776666 6777776431 12 2222221 111
Q ss_pred CCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 421 NRVEKA-HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 421 g~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
|..-.- ...... ....+..+ .-..-+..+...|....|...+..+... .+......+...-...|.++.++..
T Consensus 388 g~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 388 GEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred CCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 211000 000000 00000000 1122334455667777777777776664 2333444444555566666666655
Q ss_pred HH
Q 006614 500 FN 501 (638)
Q Consensus 500 ~~ 501 (638)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 54
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.45 E-value=2.8e+02 Score=25.13 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=7.8
Q ss_pred HHcCCCHHHHHHHHHHh
Q 006614 170 LGKAKMVNKALSIFYQI 186 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~ 186 (638)
..+.|+.++|.+...++
T Consensus 74 ~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 74 AIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 34444444444444443
No 438
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.33 E-value=1.2e+02 Score=20.85 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=24.4
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-----ccCChHHHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-----KLGRDISAIRL 253 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~ 253 (638)
+...|++-+|.++++.+-...+. +....+..+|.... +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~-~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPG-PERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-C-CHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCc-chHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45567777777777777653322 34444554444332 34555544443
No 439
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.98 E-value=2e+02 Score=23.27 Aligned_cols=43 Identities=21% Similarity=0.153 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 006614 530 DAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTK 572 (638)
Q Consensus 530 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 572 (638)
.+.++|+.|..+|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55555555555444322 33444444445555555555555543
No 440
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=39.17 E-value=3.7e+02 Score=26.08 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc------CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK------AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
.+++..++......+ .|.+......|.++.. .-++..-..+|+-+......|- ++.| -..+....--++.+
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LN-RAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLN-RAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-Eeeh-HHHHHHHhhhHHhH
Confidence 456666777666665 3677666666555432 1255566666666665543322 2222 22233333345556
Q ss_pred HHHHHHHHhCCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTY-SALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...+-+...+.. .+-..| ..-...+.+.|+.++|...|+....
T Consensus 349 La~ve~L~~~~~L-~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 349 LAMVEALLARPRL-DGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHhhccccc-ccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 6666655554321 111222 2234445566666666666666654
No 441
>PRK09857 putative transposase; Provisional
Probab=38.88 E-value=1.9e+02 Score=27.62 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=34.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006614 552 IILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
.++.-....|+.++-.++++.+.+. ..+.....-++..-+.+.|..+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3443334455555555555555443 222223334555555566666667777777777776554
No 442
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=37.77 E-value=46 Score=24.06 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=19.0
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 006614 559 KSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
-.|+.+.+.+++++..+.|..|.......+.-+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34555566666666655555555444444444444333
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.69 E-value=1.7e+02 Score=24.51 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=28.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 291 EMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 291 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
.+.+.|..++. --..+++.+.+.++.-.|.++++++.+.++..+..|...-++.+...|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444332 223344555555555666666666666555544444443444444433
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.14 E-value=1.8e+02 Score=27.90 Aligned_cols=111 Identities=8% Similarity=0.038 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH--HHHHHHhcCCHhHHHHH
Q 006614 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS--MILMLMQEGYYEKIHEL 217 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~ 217 (638)
-..+|.++++..++.+ ..+|+ --+.+...|... +.+.++ +.++.+|.. +...--+.|+..+|.+.
T Consensus 231 Ti~~AE~l~k~ALka~----e~~yr-~sqq~qh~~~~~------da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 231 TIVDAERLFKQALKAG----ETIYR-QSQQCQHQSPQH------EAQLRR--DTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hHHHHHHHHHHHHHHH----HHHHh-hHHHHhhhccch------hhhhhc--ccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3457778888777643 11222 111222222222 223333 335555533 33333456888888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 006614 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ 263 (638)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 263 (638)
|.++.+..+...-......++.++....-+.+...++.+..+...+
T Consensus 298 ~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislP 343 (556)
T KOG3807|consen 298 MRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLP 343 (556)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 8887775431011122345677777666666666666665554433
No 445
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.74 E-value=27 Score=33.38 Aligned_cols=93 Identities=11% Similarity=-0.055 Sum_probs=63.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
...|.+++|++.|...++.. ++....|-.-..++.+.++...|+.-++.....++ .....|-.-..+-...|++.+|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP--DSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCc--ccccccchhhHHHHHhhchHHH
Confidence 34567888888888777764 34666666677778888888888888888777653 2233344444455556888888
Q ss_pred HHHHHHHHHCCCCCCH
Q 006614 251 IRLFDEMKENGLQPTA 266 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~ 266 (638)
...|....+.++.+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 8888888877654443
No 446
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.59 E-value=80 Score=17.34 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=5.7
Q ss_pred HhHHHHHHHHHHh
Q 006614 211 YEKIHELYNEMCN 223 (638)
Q Consensus 211 ~~~A~~~~~~~~~ 223 (638)
++.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 447
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.38 E-value=3.1e+02 Score=24.16 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHH-HHHhcC--CHhHHHHHHHHHHhC
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSR--KCKPTANTYNSMIL-MLMQEG--YYEKIHELYNEMCNE 224 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~g--~~~~A~~~~~~~~~~ 224 (638)
..+-.....|++++|..-++++.+. ..+.-...|.-+.. +++..+ .+-+|..+|.-+...
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3334445566677666666555332 00111222333333 444443 355666666655544
No 448
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.87 E-value=2.5e+02 Score=29.86 Aligned_cols=75 Identities=7% Similarity=-0.005 Sum_probs=49.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRS--TCVMGPSVLSEIVNILGKAKMVN------KALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+++.+|..+|++-.+.++++.+... |-..-...+|..++...+.|.++ .|.+++++.. +..|..||-.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999988887653 22223455677777777888654 3444444443 33466777766
Q ss_pred HHHHHh
Q 006614 202 ILMLMQ 207 (638)
Q Consensus 202 ~~~~~~ 207 (638)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 449
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=34.34 E-value=4.2e+02 Score=25.32 Aligned_cols=53 Identities=30% Similarity=0.359 Sum_probs=35.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.++....+.++..+....+..+. ....-...+..+...|+|..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455556666666666666664 334455667777888999999988887655
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.83 E-value=2.4e+02 Score=26.93 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 498 DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 498 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
++++.+...++.|.-..+.-+.-.+.+.=.+.+.+.+|+.+... ..-|..|+..||
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHH
Confidence 45555556666666666555555555555666666666666542 222444555444
No 451
>PRK09857 putative transposase; Provisional
Probab=33.62 E-value=4.4e+02 Score=25.26 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA 298 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 298 (638)
+..++....+.|+.++-.++++.+.+. .+.......+++.-+...|.-++++++...|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444555555555555555443 2222233334455555555445555555555555544
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.33 E-value=2.1e+02 Score=26.50 Aligned_cols=61 Identities=28% Similarity=0.439 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 268 IYTTLVSIYFKLGEVEKALGLVQEMKG----KG-CALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
....+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+..+.+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 344577889999999999999998853 22 23456667778889999999999888766654
No 453
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.14 E-value=95 Score=25.93 Aligned_cols=45 Identities=11% Similarity=0.024 Sum_probs=23.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.+++.+.+.+.+-.|.++++.+.+.+...++.|-...++.+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444555555555555555555555554555555444445554444
No 454
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.08 E-value=4.5e+02 Score=25.22 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
++++.|.+.++.|.-.++..+.-.+.+.=.+.+.+.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444444445555555554444444454455555555555443
No 455
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=32.99 E-value=5.3e+02 Score=26.02 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=48.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-------HHccCCHHHHHHHHHHHHh
Q 006614 433 MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKH-------FGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-------~~~~g~~~~A~~~~~~m~~ 505 (638)
+..+.+.|+..+.+.+...++..-..+-...+|+-..+.+.+--+.....+|-. -.+...-++++++++.|..
T Consensus 174 LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 174 LDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 344556777777777777777666677777777766665433222222111111 1233456677777777754
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 006614 506 LRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 506 ~~~~p~~~~~~~l~~~~~ 523 (638)
.---.|+.-+-.|...|+
T Consensus 254 ~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 254 QLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hcccccchhHHHHHHHHh
Confidence 321223444444444443
No 456
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.76 E-value=4e+02 Score=24.54 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK-AKRYEAANELFLEL 468 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 468 (638)
.++..+-+.++++++...++++...+...+..-.+.+..+|-. .|....+.+++...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3455667778888888888887777666666655555555532 23333444444443
No 457
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.21 E-value=88 Score=21.82 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK 559 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 559 (638)
....++-++..+++..-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 333444455555554455555555555555543 244444444444433
No 458
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.71 E-value=1.6e+02 Score=28.53 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI 169 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (638)
+..|..+++.....|.+++++.+|++++..|..|-...-..+++.
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 345555555555555555555555555555555444444444443
No 459
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.68 E-value=5.1e+02 Score=26.12 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK--G-----CALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
...|++.++-.|++..|+++++.+.-. + ..-.+.+|--+.-+|...+++.+|.+.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777776666554211 0 11123344455556666666666666666554
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.60 E-value=2.2e+02 Score=21.27 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 006614 280 GEVEKALGLVQEMK 293 (638)
Q Consensus 280 g~~~~A~~~~~~m~ 293 (638)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 461
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.46 E-value=2.4e+02 Score=28.35 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=45.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH--CC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMKE--NG----LQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~--~g----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
...|++..+-.|++..|+++++.+.- .+ +++ .+.++..+.-+|.-.+++.+|.+.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999886532 11 122 45577788888999999999999998765
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.41 E-value=1e+02 Score=21.52 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 405 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
|....++.++...++..-.+.++..+.++.+.| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444566777777777777778888888877777 4566666666665554
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.04 E-value=3.8e+02 Score=23.48 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 006614 317 VEDAYGLFMNMLKEGCKPDIV-------LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP 387 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 387 (638)
++.|+.+|+.+.+.-..|... .--..+-.|.+.|.+++|.+++++..+ .|+......-+....+.++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
Confidence 567888888877764443211 123345678999999999999999876 35665555555555555543
No 464
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.99 E-value=5e+02 Score=24.84 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006614 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE-EMEEKGFPPCPAAYCSLINGYGKAKRYEAAN 462 (638)
Q Consensus 388 ~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (638)
.+....+-++|.+.++ |+......+.++......|.+-.++.. +..+ ...+|..|+.++|..|+.+-.+
T Consensus 272 ~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 272 KEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 3443444466666654 454433333333333344433222221 1211 1346777888888888876543
No 465
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=29.45 E-value=8.2e+02 Score=27.15 Aligned_cols=67 Identities=9% Similarity=0.105 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---hcCCHhHHHHHHHHHHhCC
Q 006614 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM---QEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~ 225 (638)
-+...+..+|..+-+.|++++...--.+|.+. .+.++..|...+.... ..+...++.++|++.+...
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY 180 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence 34445566666666666666655554555443 2234455544443322 2355556666666665544
No 466
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.06 E-value=5.7e+02 Score=26.48 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=4.0
Q ss_pred HHHHHHhcC
Q 006614 272 LVSIYFKLG 280 (638)
Q Consensus 272 li~~~~~~g 280 (638)
.+..++..|
T Consensus 144 ~L~~A~~~~ 152 (480)
T PHA03100 144 LLHLYLESN 152 (480)
T ss_pred HHHHHHHcC
Confidence 344444444
No 467
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.96 E-value=8e+02 Score=26.99 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 494 SDAVDLFNEM-KKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 494 ~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
++....+... .+.|+.-+......++... .|+...++.+++++...
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4445555443 4456666766666666543 68899999998887653
No 468
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.69 E-value=1.9e+02 Score=22.64 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=11.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 006614 482 VMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m 503 (638)
.++.-|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=28.45 E-value=4.2e+02 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+++..|-+..++.+..++++.|.+.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777654
No 470
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.27 E-value=2.9e+02 Score=21.62 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=10.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 006614 234 YSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
|..|+..|...|..++|++++.+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3334444444444444444444333
No 471
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.03 E-value=8.2e+02 Score=27.32 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-------------CCCCHHHHHHHHHHHHc
Q 006614 529 DDAYSLLRRMEED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE-------------IKPDAVSYNTILGCLSR 594 (638)
Q Consensus 529 ~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~l~~~~~~ 594 (638)
++..+.+++..+. |+..+......+.+.. .|+..+|+.++++....+ -.++...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 006614 595 AGMFEEAARLMKDMNAKGFEYDQITYSSI 623 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 623 (638)
|+..+++.+++++...|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMALRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 472
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.78 E-value=2.8e+02 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=9.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m 292 (638)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555555555443
No 473
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.71 E-value=7.4e+02 Score=26.08 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=43.9
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC------------CHHHHHHHHHHHHh
Q 006614 494 SDAVDLFNE-MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC-VP------------DINSHNIILNGLAK 559 (638)
Q Consensus 494 ~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p------------~~~~~~~l~~~~~~ 559 (638)
++....+.. +.+.|+..+......++.. ..|+...|..+++++...|- .. +......++.++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 333333333 3455666666666555543 36888888888887765431 11 111122223322 2
Q ss_pred cCChHHHHHHHHHhhhCCCCC
Q 006614 560 SGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 560 ~g~~~~A~~~~~~m~~~~~~p 580 (638)
.|+.+.+..+++++...|..|
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCH
Confidence 355666666666666655543
No 474
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.06 E-value=7.3e+02 Score=25.81 Aligned_cols=32 Identities=3% Similarity=-0.018 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
|+..+......++. ...|....|+.+++++..
T Consensus 197 gi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 197 NVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred CCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 44445555444432 345667777777766543
No 475
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.73 E-value=1.5e+02 Score=23.29 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=18.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
..+...+..-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333333333444444444444443344444444444444444
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.73 E-value=1.4e+02 Score=17.38 Aligned_cols=22 Identities=5% Similarity=-0.194 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLS 164 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~ 164 (638)
++.|..+|+.++. +.|++.+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3445555555544 334444443
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.71 E-value=2.8e+02 Score=23.93 Aligned_cols=43 Identities=9% Similarity=0.182 Sum_probs=19.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
+..+...++.-.|.++++++.+.+...+..|-...+..+.+.|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333334445555555555444444444333444444444
No 478
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=26.71 E-value=6.4e+02 Score=25.04 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=35.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 259 (638)
+..+.+.|-+..|+++.+-+...++. .|......+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45566677777777777777776653 35555555666555 55666666666665443
No 479
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.70 E-value=3.2e+02 Score=22.78 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 006614 397 KMKANGVLPSPFTYSILIDGFCKT-NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR 457 (638)
Q Consensus 397 ~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 457 (638)
.+.+.|...+..-. .++..+... +..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 34555665554332 233444433 4566778888888777756666666666666666653
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.41 E-value=6.2e+02 Score=24.78 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 585 YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|-++++.....|.+++++.+|+++...|-.|=...-..+++.+
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4444455555555555555555555555555444444444443
No 481
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.20 E-value=2.6e+02 Score=22.03 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSL 448 (638)
Q Consensus 413 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 448 (638)
+++.+.++...++|+++++.|.+.| ..+...-..|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4666778888899999999999888 5555444433
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=5.7e+02 Score=24.18 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
+.+-..+.+++++|+..|.++...|+..+..+.| ....+..-+...|...|
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n-----------------------------EqE~tvlel~~lyv~~g 59 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN-----------------------------EQEATVLELFKLYVSKG 59 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh-----------------------------HHHHHHHHHHHHHHhcC
Q ss_pred ChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcC
Q 006614 246 RDISAIRLF----DEMKENGLQPTAKIYTTLVSIYFKLGE-VEKALGLVQEMKGKGCALTVYTYTE-----LIKGLGRAG 315 (638)
Q Consensus 246 ~~~~A~~~~----~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g 315 (638)
+...-.+.. +.|.+..-+..+....+|+..+-...+ ++.-+++.....+....-....... ++..+.+.|
T Consensus 60 ~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~ 139 (421)
T COG5159 60 DYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTG 139 (421)
T ss_pred CcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CHHHHHH----HHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCC
Q 006614 316 RVEDAYG----LFMNMLKEGCKPDIVLINNLIN-VLGRAGRLEDALKLFNKMEAL----QCKPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 316 ~~~~A~~----~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~ 386 (638)
.+.+|+. ++.++.+-.-+|+..+...+=. +|-....+.++..-+...... -++|....---++.+.+...+
T Consensus 140 ~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd 219 (421)
T COG5159 140 KYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDD 219 (421)
T ss_pred cHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeecc
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHHHHHH
Q 006614 387 PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLINGYGKAKRYEAANEL 464 (638)
Q Consensus 387 ~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~ 464 (638)
.+-. .-..-|--...+|.....-.+|...++-|.-..+-.|.. .-+.+-.-+....--++..+.
T Consensus 220 ~dyk--------------tA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~a 285 (421)
T COG5159 220 RDYK--------------TASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRA 285 (421)
T ss_pred ccch--------------hHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHH
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHH
Q 006614 465 FLELKEYCGCSSARVYAVMIKHF 487 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~ 487 (638)
.....+.-...+...|+..+.-|
T Consensus 286 m~avaea~~NRsL~df~~aL~qY 308 (421)
T COG5159 286 MLAVAEAFGNRSLKDFSDALAQY 308 (421)
T ss_pred HHHHHHHhCCCcHhhHHHHHHHh
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.76 E-value=3.2e+02 Score=23.57 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=21.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 308 IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
+..+...++.-.|.++++.+.+.++.++..|....+..+.+.|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333334444455556666655555545444444444444444
No 484
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.69 E-value=2.9e+02 Score=20.63 Aligned_cols=43 Identities=7% Similarity=0.213 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
++|+.....|+..|...|..+++.+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777777777887777777777666666666677766654
No 485
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.61 E-value=1.1e+03 Score=27.47 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGN-CFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTT 271 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ 271 (638)
|..+++.+-+.+..|.+.++-..+++.-+ ..|. ..+++.+.+-....|.+.+|...+-.- ||. .+...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n------pdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN------PDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC------CcHHHHHHHHHH
Confidence 55666667777777777777666655432 1122 234666667777777776666554321 332 23455
Q ss_pred HHHHHHhcCCHHH------------HHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 272 LVSIYFKLGEVEK------------ALG-LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 272 li~~~~~~g~~~~------------A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
++-.++.+|.++. ... +++..-...+.-....|..|-..+...+++.+|-.
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 6666666666532 222 22222222222223345555555566666666544
No 486
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.14 E-value=2.5e+02 Score=22.14 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=19.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 006614 588 ILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSI 623 (638)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 623 (638)
+++-+.++...++|+++++-|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444555566666666666666665 4444433333
No 487
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.63 E-value=7.3e+02 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
.+.+.|+-++.+|.+.|-.|--..-..++-+
T Consensus 263 SD~dAALyylARmi~~GeDp~yiARRlv~~A 293 (436)
T COG2256 263 SDPDAALYYLARMIEAGEDPLYIARRLVRIA 293 (436)
T ss_pred CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4556666666666666544443333333333
No 488
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.58 E-value=5.7e+02 Score=23.68 Aligned_cols=126 Identities=10% Similarity=0.002 Sum_probs=0.0
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 006614 114 WAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKP 193 (638)
Q Consensus 114 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 193 (638)
|.+....=-....+..---+-+.+.|++.+|...|.+.+. .+=+.-.+..-.+.-+.-++++
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~-----------~l~~L~lkEkP~e~eW~eLdk~------- 228 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAII-----------CLRNLQLKEKPGEPEWLELDKM------- 228 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHH-----------HHHHHHhccCCCChHHHHHHHh-------
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
....+..+...+...|++-++++.-.++++..+ .++..|..-.++.+..=+.++|..=|....+
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~--~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP--GNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
No 489
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=24.56 E-value=1e+02 Score=19.67 Aligned_cols=41 Identities=7% Similarity=-0.048 Sum_probs=27.2
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006614 112 FKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMV 152 (638)
Q Consensus 112 f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (638)
.+|+-+...||.....|..+.+=+-.++....+..+++++.
T Consensus 2 A~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw 42 (46)
T PF06855_consen 2 ANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAW 42 (46)
T ss_dssp HHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHH
T ss_pred hhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 35566677788888888877777777777766666666554
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=24.36 E-value=7.6e+02 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.171 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 449 (638)
.++.+.|+.++..|.+.|..|....-..++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 477888888888888887555433333333
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.10 E-value=1.3e+02 Score=23.89 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=22.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.++..+...+.+-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555555555555555555555544555555444
No 492
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=24.02 E-value=7.2e+02 Score=24.69 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC------------------CCCHHHH---HHHHHHHHcCCC
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRS-------TC------------------VMGPSVL---SEIVNILGKAKM 175 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------------------~~~~~~~---~~l~~~~~~~g~ 175 (638)
-+.++..+..++.++|+...|.+++++.+=. .. ..|-..| ...+..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 4567777888888888888777777765311 11 1122222 335567889999
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-hcCCHhHHHHHHHHHHh
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLM-QEGYYEKIHELYNEMCN 223 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 223 (638)
+..|.++.+-+....+.-|+.....+|+.|+ +.++++--+++++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999977768888888888775 77889888888887655
No 493
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.98 E-value=8.1e+02 Score=25.76 Aligned_cols=123 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHccCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 237 LISAFGKLGRDISAIRLFDEMK-ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
++.-|.+.+++++|..++..|. ..--.---.+.+.+.+.+.+..--++.+..++.+...=..|....-......|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
=.+-|.++|..+.+.+ -|..........|+.|--++++..+...|
T Consensus 493 V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
No 494
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=23.42 E-value=8e+02 Score=24.99 Aligned_cols=352 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
|-.+.-|...|+-.+|.....++..... .+...-.+++.+....-.-...+.++.+-.+. +...-..+..++.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsff--hhe~vkralv~ame~~~ae~l~l~llke~~e~----glissSq~~kGfsr 291 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFF--HHEGVKRALVDAMEDALAEGLTLKLLKEGREE----GLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCch--hhHHHHHHHHHHHhhhhcccceeccchhhhhh----cchhhhccccCchh
Q ss_pred cCC--------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 279 LGE--------VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 279 ~g~--------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
.+. ...|...|+.+.-+.+.-+-..-+++-..-...|+.+. .+.|++ ....+|+-|...|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsg 359 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSG 359 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHH
Q 006614 351 RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN----RVEKA 426 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A 426 (638)
+..+..+.++.+-. ..-+......++......++.......+|-.-....+.++...-+.....+-... +...|
T Consensus 360 Dt~Evi~~L~DLn~--~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a 437 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNL--PEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRA 437 (645)
T ss_pred ChHHHHHHHHHcCC--ccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhcccccc
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----------------CCCCcHHH----HHHHHH
Q 006614 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY-----------------CGCSSARV----YAVMIK 485 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~~~----~~~li~ 485 (638)
-+.+.....+-+-.+.-.-..+=....+......+.+.++.+... |....+.- ...|+.
T Consensus 438 ~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLe 517 (645)
T KOG0403|consen 438 SQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLE 517 (645)
T ss_pred HHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHH
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 006614 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG---- 561 (638)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---- 561 (638)
-|...|+..+|.+..+++--- +-...+.+.+++.+..+.|+-...+.++++.-+.|.- |-+.|-.+|.+..
T Consensus 518 EY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~RV~dsl~ 592 (645)
T KOG0403|consen 518 EYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFERVYDSLP 592 (645)
T ss_pred HHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhhhhccCc
Q ss_pred ----ChHHHHHHHHHhhh
Q 006614 562 ----GPKRAMEIFTKMQH 575 (638)
Q Consensus 562 ----~~~~A~~~~~~m~~ 575 (638)
++-.|.+.|+...+
T Consensus 593 DlsLDvPna~ekf~~~Ve 610 (645)
T KOG0403|consen 593 DLSLDVPNAYEKFERYVE 610 (645)
T ss_pred ccccCCCcHHHHHHHHHH
No 495
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.40 E-value=1e+03 Score=26.19 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---------HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV---------LSEIVNILGKAKMVNKALSIFYQIKSRKCKPT 194 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 194 (638)
...+-..++-.|....+|+.++++.+++.+ .+.+... |...++---+-|+-++|+...-.+.+..-...
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~--iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR--IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh--CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Q ss_pred HHHHHHHHHHHHh---------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC
Q 006614 195 ANTYNSMILMLMQ---------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT 265 (638)
Q Consensus 195 ~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 265 (638)
+..|....+.|-. .+..+.|.++|.+.-+..+..-....+..|+.+..+.=.-..-++...--...
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~----- 352 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNS----- 352 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006614 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
.+.+.|.+++-.+.+ |+.+|- .+-.-.+++.+|.+.-+.|.+...+
T Consensus 353 ---------LlgrKG~leklq~YW----------dV~~y~---~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 353 ---------LLGRKGALEKLQEYW----------DVATYF---EASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred ---------HhhccchHHHHHHHH----------hHHHhh---hhhhhccCHHHHHHHHHHHhccCCc
No 496
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.36 E-value=1e+03 Score=28.10 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=86.8
Q ss_pred HHhcCCHhHHHH------HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-------HCCCCCCHHHHHH
Q 006614 205 LMQEGYYEKIHE------LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK-------ENGLQPTAKIYTT 271 (638)
Q Consensus 205 ~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-------~~g~~~~~~~~~~ 271 (638)
....|.+.+|.+ ++......-.. +....|..+...+-+.|+.++|+..=.... ...-.-+...|..
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~-~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHP-EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcch-hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 344556666655 55533322221 445667788888888888888887654332 1222224455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CCCHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK-----GC-ALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKE-----GC--KPDIV 337 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~p~~~ 337 (638)
+.......++...|...+...... |. .|. ..+++.+-..+...++++.|.++.+.+... |. -++..
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 666666777777777777665542 22 333 333444444444557788888888777653 11 12344
Q ss_pred HHHHHHHHHHccCCHHHHHHHH
Q 006614 338 LINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~ 359 (638)
++..+.+.+...+++..|....
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 5556655555555555554433
No 497
>PRK09462 fur ferric uptake regulator; Provisional
Probab=23.17 E-value=4.4e+02 Score=21.95 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 45566666666666655555555444455555444
No 498
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.13 E-value=5.8e+02 Score=23.25 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=47.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 369 PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP---SPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 369 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
+....+|.|+--|.-..+..+++..+ ....|+.| |..++ ..-|......|+.+.|++...++...-+..|..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~F---a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKF---AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHh---ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44444555555555555554443322 22223333 22222 234555677788888888777765433333332
Q ss_pred HHHHHHH----HHHccCCHHHHHHHHHHHH
Q 006614 444 AYCSLIN----GYGKAKRYEAANELFLELK 469 (638)
Q Consensus 444 ~~~~li~----~~~~~g~~~~A~~~~~~~~ 469 (638)
.+-.+.. -+.+.|..++|+++.+.-.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222211 1345566666666655433
No 499
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.10 E-value=3.3e+02 Score=20.43 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 439 PPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
|.|...-..+...+...|++++|.+.+-.+.+.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444444555555555555555555554443
No 500
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.01 E-value=2.6e+02 Score=19.23 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=20.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----HcCChHHHHHH
Q 006614 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV-----RAGMIDDAYSL 534 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-----~~g~~~~A~~~ 534 (638)
..|++=+|-++++.+=.....+....+..+|.... +.|+.+.|..+
T Consensus 11 n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred cCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35556666666665543222223344444443322 34555555443
Done!