Query 006614
Match_columns 638
No_of_seqs 819 out of 3572
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 04:18:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-40 6.8E-45 355.0 43.2 490 123-627 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.7E-39 9.1E-44 346.2 37.9 465 157-636 81-569 (597)
3 4g26_A Pentatricopeptide repea 100.0 6E-31 2E-35 269.1 25.5 186 445-630 29-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-27 1.1E-31 237.9 50.1 380 132-559 6-385 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 4.1E-27 1.4E-31 237.1 48.0 378 205-630 9-386 (388)
6 4g26_A Pentatricopeptide repea 100.0 4.1E-30 1.4E-34 262.9 25.8 211 385-595 3-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.3E-23 8E-28 218.2 40.6 440 125-576 6-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.2E-23 7.6E-28 218.3 39.5 445 160-618 6-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 8E-22 2.7E-26 202.7 40.8 371 194-636 25-444 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.7E-26 201.7 41.7 339 123-519 24-370 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.3E-21 4.4E-26 206.1 40.2 434 125-576 25-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 7.3E-22 2.5E-26 208.0 36.4 429 160-611 25-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.2E-18 7.4E-23 171.1 41.6 325 125-506 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 3.5E-18 1.2E-22 169.5 41.4 328 196-593 4-351 (359)
15 2xm6_A Protein corresponding t 99.9 2.8E-16 9.4E-21 162.9 52.2 352 159-577 38-433 (490)
16 2xm6_A Protein corresponding t 99.8 9.2E-16 3.1E-20 159.0 52.9 364 108-542 26-433 (490)
17 2ooe_A Cleavage stimulation fa 99.8 1.3E-16 4.5E-21 167.1 45.4 432 148-611 2-492 (530)
18 2ooe_A Cleavage stimulation fa 99.8 3.5E-16 1.2E-20 163.8 46.3 424 122-575 10-491 (530)
19 3hym_B Cell division cycle pro 99.8 8.6E-18 2.9E-22 164.7 31.8 296 156-487 18-314 (330)
20 3hym_B Cell division cycle pro 99.8 1.1E-17 3.7E-22 163.9 31.9 294 121-458 18-321 (330)
21 1xi4_A Clathrin heavy chain; a 99.8 1.4E-14 4.8E-19 156.9 51.5 385 157-603 982-1376(1630)
22 1fch_A Peroxisomal targeting s 99.8 1.1E-17 3.9E-22 166.6 26.0 122 172-296 37-162 (368)
23 1fch_A Peroxisomal targeting s 99.8 1.6E-17 5.6E-22 165.5 27.0 305 243-574 37-357 (368)
24 1xi4_A Clathrin heavy chain; a 99.8 1.2E-13 4.3E-18 149.7 54.6 442 90-596 951-1415(1630)
25 3spa_A Mtrpol, DNA-directed RN 99.8 1E-18 3.5E-23 183.1 11.7 151 476-631 126-286 (1134)
26 1b89_A Protein (clathrin heavy 99.8 8.1E-17 2.8E-21 156.6 23.9 379 172-606 15-412 (449)
27 4eqf_A PEX5-related protein; a 99.8 1.3E-16 4.3E-21 158.9 26.1 244 265-540 64-309 (365)
28 1b89_A Protein (clathrin heavy 99.8 1.2E-16 4.2E-21 155.3 24.7 289 95-429 9-304 (449)
29 4eqf_A PEX5-related protein; a 99.8 9.4E-17 3.2E-21 159.8 24.6 278 124-432 64-352 (365)
30 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-18 6.1E-23 181.3 11.1 119 510-628 125-247 (1134)
31 4g1t_A Interferon-induced prot 99.8 2.8E-15 9.5E-20 154.8 35.1 151 457-620 315-469 (472)
32 4g1t_A Interferon-induced prot 99.8 3.7E-15 1.3E-19 153.9 35.6 150 422-584 315-468 (472)
33 3cv0_A Peroxisome targeting si 99.7 1.2E-15 4.1E-20 149.0 28.4 152 311-501 148-310 (327)
34 3mkr_A Coatomer subunit epsilo 99.7 1.2E-15 4E-20 145.6 27.4 252 133-400 7-263 (291)
35 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.3E-20 148.9 28.2 277 125-433 21-312 (327)
36 3mkr_A Coatomer subunit epsilo 99.7 3.3E-15 1.1E-19 142.5 29.2 250 170-470 9-263 (291)
37 2pl2_A Hypothetical conserved 99.7 6.5E-15 2.2E-19 134.2 22.0 195 124-325 4-209 (217)
38 3uq3_A Heat shock protein STI1 99.7 2E-14 6.7E-19 135.0 25.2 226 125-365 5-236 (258)
39 2pl2_A Hypothetical conserved 99.7 1.5E-14 5.1E-19 131.7 22.7 200 157-363 2-212 (217)
40 3e4b_A ALGK; tetratricopeptide 99.6 2.5E-14 8.6E-19 145.8 23.1 376 167-609 10-419 (452)
41 2ho1_A Type 4 fimbrial biogene 99.6 2.7E-13 9.2E-18 126.8 26.4 202 125-330 37-238 (252)
42 2vq2_A PILW, putative fimbrial 99.6 3.1E-13 1.1E-17 123.8 26.4 200 161-364 9-210 (225)
43 3e4b_A ALGK; tetratricopeptide 99.6 1.1E-13 3.9E-18 140.9 25.4 215 130-363 8-244 (452)
44 1ouv_A Conserved hypothetical 99.6 2.5E-12 8.6E-17 121.8 32.9 224 124-366 5-252 (273)
45 3uq3_A Heat shock protein STI1 99.6 2.4E-13 8.1E-18 127.6 24.9 95 268-364 7-107 (258)
46 2ho1_A Type 4 fimbrial biogene 99.6 6.8E-13 2.3E-17 124.1 27.5 211 160-377 37-248 (252)
47 3u4t_A TPR repeat-containing p 99.6 3.2E-13 1.1E-17 128.0 25.2 237 125-366 3-251 (272)
48 2q7f_A YRRB protein; TPR, prot 99.6 1E-13 3.5E-18 128.8 21.0 202 124-331 22-223 (243)
49 2h6f_A Protein farnesyltransfe 99.6 5E-13 1.7E-17 131.8 26.7 245 124-378 96-360 (382)
50 4e6h_A MRNA 3'-END-processing 99.6 1E-10 3.6E-15 123.0 45.3 230 392-627 329-584 (679)
51 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.6E-17 120.2 26.8 207 122-331 5-212 (225)
52 2q7f_A YRRB protein; TPR, prot 99.6 4.1E-13 1.4E-17 124.7 22.0 203 158-366 21-223 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-13 5.4E-18 130.3 18.0 247 102-359 18-269 (275)
54 3u4t_A TPR repeat-containing p 99.5 2.1E-12 7.1E-17 122.3 25.7 255 160-450 3-263 (272)
55 2h6f_A Protein farnesyltransfe 99.5 2E-12 6.8E-17 127.5 25.7 197 160-362 97-302 (382)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.8E-13 1.3E-17 127.6 19.6 225 135-366 15-245 (275)
57 1ouv_A Conserved hypothetical 99.5 4.1E-11 1.4E-15 113.4 32.3 224 335-612 5-252 (273)
58 4e6h_A MRNA 3'-END-processing 99.5 5.4E-10 1.8E-14 117.6 43.1 414 122-541 63-570 (679)
59 3sf4_A G-protein-signaling mod 99.5 5.5E-12 1.9E-16 127.0 23.7 246 194-470 8-295 (406)
60 2ond_A Cleavage stimulation fa 99.5 5.4E-11 1.9E-15 114.7 29.1 220 142-366 33-271 (308)
61 3sf4_A G-protein-signaling mod 99.5 3.6E-12 1.2E-16 128.4 21.8 302 300-633 8-363 (406)
62 4a1s_A PINS, partner of inscut 99.5 1.1E-11 3.6E-16 125.3 24.9 280 125-436 48-372 (411)
63 4a1s_A PINS, partner of inscut 99.5 6.8E-12 2.3E-16 126.7 23.1 236 202-470 55-331 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-11 4.8E-16 108.8 22.3 165 195-364 5-169 (184)
65 3vtx_A MAMA; tetratricopeptide 99.5 1.4E-11 4.9E-16 108.7 22.3 166 124-294 4-169 (184)
66 2ond_A Cleavage stimulation fa 99.4 4.3E-11 1.5E-15 115.4 26.8 221 106-332 33-272 (308)
67 3ro2_A PINS homolog, G-protein 99.4 4E-12 1.4E-16 124.2 19.9 237 126-363 6-290 (338)
68 4abn_A Tetratricopeptide repea 99.4 7.2E-12 2.5E-16 128.4 21.1 215 141-362 84-318 (474)
69 3ro2_A PINS homolog, G-protein 99.4 6.1E-12 2.1E-16 122.9 19.7 237 200-469 10-290 (338)
70 4abn_A Tetratricopeptide repea 99.4 7.1E-12 2.4E-16 128.5 20.4 215 104-327 83-318 (474)
71 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-12 4.8E-17 126.1 13.7 242 122-364 24-306 (311)
72 3ulq_A Response regulator aspa 99.4 5.7E-11 1.9E-15 118.6 24.7 235 272-540 109-367 (383)
73 3ulq_A Response regulator aspa 99.4 8E-11 2.8E-15 117.5 22.5 299 136-470 23-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-11 1.1E-15 116.6 17.3 238 371-610 27-306 (311)
75 3as5_A MAMA; tetratricopeptide 99.3 2.3E-10 7.9E-15 100.8 20.9 157 166-327 14-170 (186)
76 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.6E-15 100.5 20.2 166 125-295 8-173 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.3 1E-10 3.6E-15 124.6 20.3 165 124-293 8-172 (723)
78 1hz4_A MALT regulatory protein 99.3 5.3E-09 1.8E-13 103.8 31.4 265 310-575 23-321 (373)
79 3q15_A PSP28, response regulat 99.3 1.8E-09 6.2E-14 107.4 27.6 235 271-540 106-364 (378)
80 4i17_A Hypothetical protein; T 99.3 6.5E-10 2.2E-14 101.9 22.2 208 123-344 5-222 (228)
81 4gyw_A UDP-N-acetylglucosamine 99.3 1.7E-10 5.7E-15 123.1 20.5 166 159-329 8-173 (723)
82 1hz4_A MALT regulatory protein 99.3 4.5E-09 1.5E-13 104.4 29.2 132 198-329 56-202 (373)
83 4i17_A Hypothetical protein; T 99.3 1.2E-09 4.2E-14 100.0 22.7 208 157-379 4-221 (228)
84 3q15_A PSP28, response regulat 99.3 2.2E-09 7.5E-14 106.8 26.3 235 342-610 107-364 (378)
85 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.6E-15 108.7 15.2 227 137-364 13-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 3.3E-10 1.1E-14 107.5 14.5 227 103-330 15-281 (283)
87 2uy1_A Cleavage stimulation fa 99.1 9.3E-08 3.2E-12 97.7 31.3 216 122-365 12-242 (493)
88 1qqe_A Vesicular transport pro 99.1 1.7E-09 5.8E-14 103.2 16.2 131 233-363 119-267 (292)
89 3qky_A Outer membrane assembly 99.1 6.1E-09 2.1E-13 97.5 19.7 188 123-331 13-225 (261)
90 2fo7_A Synthetic consensus TPR 99.1 1E-08 3.6E-13 84.5 17.8 126 199-328 5-130 (136)
91 3qky_A Outer membrane assembly 99.1 7.8E-09 2.7E-13 96.8 18.3 122 101-225 27-178 (261)
92 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.9E-13 84.3 17.2 129 163-295 4-132 (136)
93 1qqe_A Vesicular transport pro 99.0 9E-09 3.1E-13 98.1 18.7 203 126-328 38-267 (292)
94 2uy1_A Cleavage stimulation fa 99.0 5.5E-07 1.9E-11 92.0 33.0 201 392-610 199-412 (493)
95 3mv2_B Coatomer subunit epsilo 99.0 6E-08 2E-12 90.5 23.0 178 426-610 85-281 (310)
96 3urz_A Uncharacterized protein 99.0 1.3E-08 4.5E-13 91.4 17.6 125 201-330 60-186 (208)
97 3urz_A Uncharacterized protein 99.0 1.5E-08 5.3E-13 91.0 17.8 176 124-307 3-196 (208)
98 3mv2_B Coatomer subunit epsilo 99.0 1E-07 3.6E-12 88.8 23.6 181 179-366 85-283 (310)
99 2pzi_A Probable serine/threoni 99.0 4E-09 1.4E-13 113.1 15.8 171 136-313 402-580 (681)
100 2pzi_A Probable serine/threoni 99.0 5.7E-09 2E-13 111.9 15.9 174 171-351 402-583 (681)
101 3dra_A Protein farnesyltransfe 99.0 4.3E-07 1.5E-11 85.7 26.8 218 212-435 50-286 (306)
102 3dra_A Protein farnesyltransfe 99.0 5.6E-07 1.9E-11 84.9 27.5 217 142-364 50-286 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.2E-08 2.5E-12 87.8 20.5 204 125-366 4-214 (225)
104 3qou_A Protein YBBN; thioredox 98.9 2E-08 6.7E-13 95.4 16.5 160 162-326 119-280 (287)
105 2yhc_A BAMD, UPF0169 lipoprote 98.9 9.7E-08 3.3E-12 87.0 20.6 194 101-332 16-215 (225)
106 3rjv_A Putative SEL1 repeat pr 98.9 1.6E-07 5.4E-12 84.5 21.2 176 178-366 4-198 (212)
107 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4E-12 85.4 20.2 162 442-612 18-198 (212)
108 4ga2_A E3 SUMO-protein ligase 98.9 4.6E-09 1.6E-13 88.7 9.9 83 164-249 35-117 (150)
109 4ga2_A E3 SUMO-protein ligase 98.9 6.5E-09 2.2E-13 87.8 10.6 111 170-284 7-117 (150)
110 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.6E-13 88.1 13.3 161 163-328 9-171 (176)
111 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.5E-13 87.7 13.5 163 127-294 8-172 (176)
112 2vsy_A XCC0866; transferase, g 98.9 6.3E-08 2.1E-12 102.0 18.7 156 138-298 2-160 (568)
113 3qou_A Protein YBBN; thioredox 98.9 5.7E-08 2E-12 92.1 16.6 167 122-293 114-282 (287)
114 2vsy_A XCC0866; transferase, g 98.8 6.1E-08 2.1E-12 102.0 17.8 153 103-261 3-158 (568)
115 3u3w_A Transcriptional activat 98.8 8.9E-07 3E-11 84.3 23.6 164 201-364 81-265 (293)
116 3q7a_A Farnesyltransferase alp 98.8 5.8E-06 2E-10 78.7 26.3 223 136-364 65-330 (349)
117 3q7a_A Farnesyltransferase alp 98.8 7E-06 2.4E-10 78.2 26.5 138 173-315 67-215 (349)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.5E-07 2.6E-11 80.1 19.2 128 164-297 10-152 (213)
119 2ifu_A Gamma-SNAP; membrane fu 98.7 2.8E-07 9.7E-12 88.4 17.0 200 138-363 4-222 (307)
120 3u3w_A Transcriptional activat 98.7 2.4E-06 8E-11 81.3 22.1 127 483-609 121-264 (293)
121 2c2l_A CHIP, carboxy terminus 98.7 9.8E-08 3.4E-12 90.2 12.1 100 124-225 3-102 (281)
122 2ifu_A Gamma-SNAP; membrane fu 98.7 3.3E-07 1.1E-11 87.9 16.0 188 168-358 44-254 (307)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 9.5E-07 3.3E-11 79.5 18.1 131 126-261 7-151 (213)
124 2qfc_A PLCR protein; TPR, HTH, 98.7 2.3E-06 8E-11 81.3 21.7 166 126-292 76-263 (293)
125 4gco_A Protein STI-1; structur 98.7 6.1E-07 2.1E-11 72.8 14.9 96 197-295 15-110 (126)
126 1a17_A Serine/threonine protei 98.7 6.4E-07 2.2E-11 76.8 15.4 128 126-257 14-143 (166)
127 4gco_A Protein STI-1; structur 98.7 7.7E-07 2.6E-11 72.2 14.8 98 126-225 14-111 (126)
128 1a17_A Serine/threonine protei 98.6 1.2E-06 4.1E-11 75.0 16.5 127 197-327 15-143 (166)
129 2qfc_A PLCR protein; TPR, HTH, 98.6 4.1E-06 1.4E-10 79.6 21.7 169 196-364 76-265 (293)
130 2c2l_A CHIP, carboxy terminus 98.6 2.2E-07 7.4E-12 87.8 11.5 193 159-364 3-198 (281)
131 1na0_A Designed protein CTPR3; 98.6 2E-06 6.9E-11 69.3 15.8 97 196-295 10-106 (125)
132 1na0_A Designed protein CTPR3; 98.6 2E-06 6.9E-11 69.3 15.6 99 125-225 9-107 (125)
133 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.4E-11 71.5 14.3 117 123-243 14-130 (133)
134 3gw4_A Uncharacterized protein 98.6 4.9E-07 1.7E-11 80.6 12.6 155 172-327 4-173 (203)
135 3gyz_A Chaperone protein IPGC; 98.6 1.4E-06 4.8E-11 73.0 14.1 95 162-259 38-132 (151)
136 4f3v_A ESX-1 secretion system 98.5 4.5E-06 1.5E-10 76.8 18.1 127 200-330 107-237 (282)
137 2lni_A Stress-induced-phosphop 98.5 1.6E-06 5.5E-11 70.9 13.9 97 195-294 16-112 (133)
138 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.9E-11 70.0 14.4 118 125-246 12-129 (131)
139 2vyi_A SGTA protein; chaperone 98.5 2.3E-06 8E-11 69.6 14.6 115 197-315 14-128 (131)
140 4f3v_A ESX-1 secretion system 98.5 1.9E-06 6.6E-11 79.2 15.3 190 102-297 19-239 (282)
141 3gyz_A Chaperone protein IPGC; 98.5 8.1E-07 2.8E-11 74.4 11.7 102 123-226 34-135 (151)
142 2vgx_A Chaperone SYCD; alterna 98.5 1.6E-06 5.6E-11 72.6 13.2 100 124-225 20-119 (148)
143 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 77.6 13.3 158 205-364 2-175 (203)
144 1p5q_A FKBP52, FK506-binding p 98.5 2.8E-06 9.7E-11 82.4 16.3 124 124-250 146-283 (336)
145 1p5q_A FKBP52, FK506-binding p 98.5 3.1E-06 1.1E-10 82.1 15.8 123 160-285 147-283 (336)
146 2e2e_A Formate-dependent nitri 98.5 1.3E-06 4.4E-11 75.9 11.9 118 138-259 23-143 (177)
147 3dss_A Geranylgeranyl transfer 98.5 9.9E-05 3.4E-09 70.0 25.3 183 176-364 90-303 (331)
148 2e2e_A Formate-dependent nitri 98.4 2.6E-06 8.9E-11 74.0 13.4 119 244-365 23-144 (177)
149 2vgx_A Chaperone SYCD; alterna 98.4 1.1E-06 3.7E-11 73.7 10.3 97 195-294 21-117 (148)
150 3upv_A Heat shock protein STI1 98.4 4.4E-06 1.5E-10 67.7 13.4 97 126-224 5-101 (126)
151 2fbn_A 70 kDa peptidylprolyl i 98.4 3.9E-07 1.3E-11 81.0 7.1 99 195-294 38-150 (198)
152 3sz7_A HSC70 cochaperone (SGT) 98.4 4.2E-06 1.4E-10 71.6 13.2 102 124-227 10-111 (164)
153 1elw_A TPR1-domain of HOP; HOP 98.4 1.4E-05 4.8E-10 63.4 15.6 97 196-295 5-101 (118)
154 1elw_A TPR1-domain of HOP; HOP 98.4 1.3E-05 4.3E-10 63.7 15.2 98 126-225 5-102 (118)
155 3upv_A Heat shock protein STI1 98.4 6.5E-06 2.2E-10 66.7 13.5 95 197-294 6-100 (126)
156 2xcb_A PCRH, regulatory protei 98.4 3.3E-06 1.1E-10 70.2 11.6 100 124-225 17-116 (142)
157 3dss_A Geranylgeranyl transfer 98.4 0.00041 1.4E-08 65.7 27.2 219 105-331 46-305 (331)
158 4gcn_A Protein STI-1; structur 98.3 7.8E-06 2.7E-10 66.3 13.0 56 166-222 14-69 (127)
159 2dba_A Smooth muscle cell asso 98.3 2.2E-05 7.5E-10 65.4 15.9 102 122-226 25-130 (148)
160 2kck_A TPR repeat; tetratricop 98.3 6.6E-06 2.2E-10 64.7 11.9 96 162-260 8-106 (112)
161 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4E-10 65.3 13.3 106 125-234 8-119 (127)
162 2fbn_A 70 kDa peptidylprolyl i 98.3 1.2E-05 4E-10 71.3 14.4 119 126-248 39-173 (198)
163 2xcb_A PCRH, regulatory protei 98.3 7.9E-06 2.7E-10 67.9 12.2 94 163-259 21-114 (142)
164 3q49_B STIP1 homology and U bo 98.3 1.8E-05 6E-10 65.1 13.8 93 162-257 11-103 (137)
165 2kck_A TPR repeat; tetratricop 98.3 8.5E-06 2.9E-10 64.1 11.3 98 195-295 6-106 (112)
166 4b4t_Q 26S proteasome regulato 98.3 5.9E-05 2E-09 76.1 20.3 196 415-610 12-244 (434)
167 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4E-10 66.2 12.5 102 122-225 6-107 (137)
168 2dba_A Smooth muscle cell asso 98.2 3.9E-05 1.3E-09 63.8 15.6 98 159-260 27-128 (148)
169 4b4t_Q 26S proteasome regulato 98.2 5.3E-05 1.8E-09 76.4 19.3 167 198-364 58-244 (434)
170 3sz7_A HSC70 cochaperone (SGT) 98.2 1.4E-05 4.8E-10 68.2 12.7 96 161-259 12-107 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.2 9.6E-06 3.3E-10 65.9 11.0 56 166-222 10-65 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.2 1.2E-05 4E-10 65.3 11.4 111 125-239 4-120 (131)
173 1hxi_A PEX5, peroxisome target 98.2 1.2E-05 4.2E-10 64.5 11.1 96 128-225 20-115 (121)
174 1hxi_A PEX5, peroxisome target 98.2 1.3E-05 4.4E-10 64.3 10.6 92 165-259 22-113 (121)
175 3k9i_A BH0479 protein; putativ 98.2 2.8E-06 9.6E-11 67.9 6.4 88 138-226 3-92 (117)
176 2xev_A YBGF; tetratricopeptide 98.1 9E-05 3.1E-09 59.9 14.7 95 129-225 6-106 (129)
177 3ro3_A PINS homolog, G-protein 98.1 2.1E-05 7.2E-10 66.6 10.9 96 126-221 10-115 (164)
178 1wao_1 Serine/threonine protei 98.1 2.2E-05 7.6E-10 80.0 12.5 119 133-255 14-134 (477)
179 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.7E-10 67.2 10.0 97 162-258 11-116 (164)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.9E-05 1.7E-09 77.1 14.5 138 125-286 268-405 (457)
181 2xev_A YBGF; tetratricopeptide 98.0 0.0001 3.6E-09 59.6 13.9 96 164-260 6-105 (129)
182 1ihg_A Cyclophilin 40; ppiase 98.0 5.7E-05 1.9E-09 74.0 13.5 139 126-287 224-362 (370)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.8E-05 2.3E-09 76.0 14.4 135 194-330 267-415 (457)
184 1wao_1 Serine/threonine protei 98.0 2.3E-05 7.9E-10 79.8 10.9 122 165-290 11-134 (477)
185 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.8E-10 63.7 7.0 87 172-260 2-90 (117)
186 1dce_A Protein (RAB geranylger 98.0 0.00049 1.7E-08 71.4 20.3 173 175-353 44-243 (567)
187 2hr2_A Hypothetical protein; a 97.9 0.0001 3.5E-09 61.0 11.7 61 197-259 59-130 (159)
188 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.6E-09 62.5 12.4 99 125-224 11-126 (162)
189 1ihg_A Cyclophilin 40; ppiase 97.9 9.1E-05 3.1E-09 72.6 13.5 138 196-356 224-361 (370)
190 3rkv_A Putative peptidylprolyl 97.9 0.00011 3.6E-09 62.5 12.1 98 161-260 12-126 (162)
191 1dce_A Protein (RAB geranylger 97.9 0.0011 3.7E-08 68.8 21.3 171 459-634 46-243 (567)
192 2hr2_A Hypothetical protein; a 97.9 0.00015 5.1E-09 60.0 11.5 100 125-225 11-132 (159)
193 2if4_A ATFKBP42; FKBP-like, al 97.9 3.9E-05 1.3E-09 74.4 9.2 149 126-296 180-329 (338)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 4.4E-05 1.5E-09 74.0 9.0 148 162-331 181-329 (338)
195 1klx_A Cysteine rich protein B 97.8 0.00065 2.2E-08 55.7 14.6 82 243-330 37-126 (138)
196 3n71_A Histone lysine methyltr 97.8 0.00012 4.1E-09 74.1 11.1 125 171-295 320-464 (490)
197 3n71_A Histone lysine methyltr 97.7 0.00025 8.6E-09 71.7 12.4 127 204-330 318-464 (490)
198 1klx_A Cysteine rich protein B 97.7 0.0013 4.5E-08 53.8 14.7 17 595-611 110-126 (138)
199 2l6j_A TPR repeat-containing p 97.6 7.2E-05 2.5E-09 58.6 6.1 63 162-225 6-68 (111)
200 2kat_A Uncharacterized protein 97.6 0.00025 8.6E-09 56.0 9.2 78 144-223 4-81 (115)
201 1na3_A Designed protein CTPR2; 97.6 0.0007 2.4E-08 50.4 10.2 61 163-224 12-72 (91)
202 1zu2_A Mitochondrial import re 97.5 0.0002 6.7E-09 59.2 7.4 83 174-259 16-119 (158)
203 3ma5_A Tetratricopeptide repea 97.5 0.00023 7.8E-09 54.6 7.3 64 159-223 6-69 (100)
204 2kat_A Uncharacterized protein 97.5 0.00069 2.4E-08 53.4 10.0 79 178-259 3-81 (115)
205 1na3_A Designed protein CTPR2; 97.5 0.00098 3.4E-08 49.6 10.1 82 194-278 8-89 (91)
206 2l6j_A TPR repeat-containing p 97.4 0.0011 3.6E-08 51.6 10.5 64 511-575 3-66 (111)
207 1zu2_A Mitochondrial import re 97.4 0.00034 1.2E-08 57.7 7.5 99 136-239 13-132 (158)
208 3ma5_A Tetratricopeptide repea 97.2 0.002 7E-08 49.1 8.8 64 194-259 6-69 (100)
209 3bee_A Putative YFRE protein; 96.7 0.025 8.7E-07 42.1 11.1 68 157-225 3-73 (93)
210 3ly7_A Transcriptional activat 96.7 0.018 6E-07 54.9 12.3 64 265-330 276-339 (372)
211 3qww_A SET and MYND domain-con 96.6 0.011 3.8E-07 58.7 11.1 85 526-610 312-410 (433)
212 3ly7_A Transcriptional activat 96.6 0.11 3.7E-06 49.5 17.1 75 299-377 275-349 (372)
213 3qwp_A SET and MYND domain-con 96.6 0.012 4.1E-07 58.5 11.0 61 233-293 331-398 (429)
214 3qww_A SET and MYND domain-con 96.6 0.0054 1.8E-07 60.9 8.3 86 174-259 312-410 (433)
215 3qwp_A SET and MYND domain-con 96.5 0.008 2.7E-07 59.7 9.1 90 170-259 297-399 (429)
216 2kc7_A BFR218_protein; tetratr 96.4 0.019 6.5E-07 43.2 9.2 59 167-226 7-66 (99)
217 3u64_A Protein TP_0956; tetrat 96.4 0.13 4.4E-06 46.9 15.2 93 247-341 179-282 (301)
218 2kc7_A BFR218_protein; tetratr 96.4 0.01 3.6E-07 44.8 7.3 58 201-260 6-64 (99)
219 3mkq_A Coatomer beta'-subunit; 96.3 0.2 6.8E-06 54.7 19.7 75 235-327 633-707 (814)
220 3u64_A Protein TP_0956; tetrat 96.2 0.58 2E-05 42.7 18.6 94 528-623 179-283 (301)
221 3mkq_A Coatomer beta'-subunit; 96.1 0.082 2.8E-06 57.8 15.6 27 477-503 681-707 (814)
222 1pc2_A Mitochondria fission pr 96.0 0.042 1.5E-06 44.7 9.2 83 143-226 16-102 (152)
223 1wy6_A Hypothetical protein ST 96.0 0.36 1.2E-05 37.8 13.6 67 546-613 90-156 (172)
224 2v5f_A Prolyl 4-hydroxylase su 96.0 0.065 2.2E-06 40.9 10.0 66 160-225 5-76 (104)
225 3mkq_B Coatomer subunit alpha; 95.9 0.63 2.2E-05 38.9 16.0 98 417-535 15-112 (177)
226 1pc2_A Mitochondria fission pr 95.8 0.12 4.1E-06 42.0 11.3 82 282-365 14-100 (152)
227 3bee_A Putative YFRE protein; 95.6 0.08 2.7E-06 39.3 9.0 65 194-260 5-72 (93)
228 3mkq_B Coatomer subunit alpha; 95.6 0.52 1.8E-05 39.4 14.5 45 171-221 16-60 (177)
229 2v5f_A Prolyl 4-hydroxylase su 95.0 0.27 9.2E-06 37.3 10.6 61 445-505 8-74 (104)
230 4h7y_A Dual specificity protei 95.0 0.37 1.3E-05 38.7 11.0 103 194-299 12-127 (161)
231 4h7y_A Dual specificity protei 94.7 0.43 1.5E-05 38.3 10.7 103 122-226 10-125 (161)
232 3lvg_A Clathrin heavy chain 1; 94.7 5.3E-06 1.8E-10 80.0 -20.5 243 125-390 54-323 (624)
233 1nzn_A CGI-135 protein, fissio 94.5 0.33 1.1E-05 37.9 9.7 83 143-226 19-105 (126)
234 1wy6_A Hypothetical protein ST 94.4 1.4 4.9E-05 34.5 15.3 68 300-368 90-157 (172)
235 1nzn_A CGI-135 protein, fissio 93.6 0.64 2.2E-05 36.3 9.6 82 211-295 17-103 (126)
236 1v54_E Cytochrome C oxidase po 93.3 1 3.6E-05 33.1 9.5 65 562-627 25-89 (109)
237 3lpz_A GET4 (YOR164C homolog); 93.0 5.9 0.0002 37.0 20.8 167 233-434 37-214 (336)
238 3lvg_A Clathrin heavy chain 1; 92.2 8.1E-05 2.8E-09 72.0 -17.0 404 124-569 82-534 (624)
239 2y69_E Cytochrome C oxidase su 91.7 1.8 6.2E-05 33.8 9.5 64 563-627 69-132 (152)
240 4fhn_B Nucleoporin NUP120; pro 91.5 4.2 0.00014 46.1 16.9 130 233-364 901-1049(1139)
241 4b4t_P 26S proteasome regulato 91.5 12 0.00041 37.1 19.4 58 446-503 141-203 (445)
242 4b4t_P 26S proteasome regulato 91.2 13 0.00043 36.8 18.4 172 403-575 52-246 (445)
243 4ady_A RPN2, 26S proteasome re 90.8 21 0.00072 38.7 39.9 274 345-629 383-673 (963)
244 2ff4_A Probable regulatory pro 90.4 1.2 4.1E-05 43.3 9.8 69 198-268 174-247 (388)
245 3ffl_A Anaphase-promoting comp 90.3 1.2 4.1E-05 36.6 7.9 26 197-222 65-90 (167)
246 3o48_A Mitochondria fission 1 89.8 3.3 0.00011 32.5 9.7 69 157-225 37-108 (134)
247 4gns_B Protein CSD3, chitin bi 89.6 2.8 9.4E-05 44.4 12.1 52 521-573 346-397 (754)
248 4fhn_B Nucleoporin NUP120; pro 89.4 12 0.00041 42.4 18.2 168 166-356 818-991 (1139)
249 2wpv_A GET4, UPF0363 protein Y 89.1 14 0.00048 34.2 19.9 167 233-434 35-215 (312)
250 1v54_E Cytochrome C oxidase po 89.1 1.8 6.1E-05 31.9 7.1 62 141-203 26-87 (109)
251 1y8m_A FIS1; mitochondria, unk 89.1 7.4 0.00025 31.0 11.6 69 157-225 36-107 (144)
252 3txn_A 26S proteasome regulato 88.8 14 0.00049 35.6 15.7 118 105-222 79-208 (394)
253 3o48_A Mitochondria fission 1 88.3 3.6 0.00012 32.3 8.9 65 545-609 38-105 (134)
254 4gns_B Protein CSD3, chitin bi 88.0 2.6 8.7E-05 44.6 10.6 86 509-596 610-708 (754)
255 2ff4_A Probable regulatory pro 87.1 4.2 0.00014 39.5 11.1 55 166-221 177-231 (388)
256 2y69_E Cytochrome C oxidase su 84.8 3.7 0.00013 32.1 7.1 60 143-203 71-130 (152)
257 2p58_C Putative type III secre 83.1 11 0.00037 27.7 8.5 78 527-612 22-99 (116)
258 2uwj_G Type III export protein 81.0 10 0.00036 27.7 7.8 78 527-612 21-98 (115)
259 3ffl_A Anaphase-promoting comp 80.5 11 0.00039 30.8 9.0 121 126-260 21-151 (167)
260 3txn_A 26S proteasome regulato 80.4 43 0.0015 32.2 21.7 92 412-503 104-207 (394)
261 1zbp_A Hypothetical protein VP 80.2 33 0.0011 30.8 13.4 116 309-436 5-129 (273)
262 4ady_A RPN2, 26S proteasome re 79.1 77 0.0027 34.4 38.2 260 309-575 382-657 (963)
263 4b4t_R RPN7, 26S proteasome re 78.3 24 0.00083 34.6 12.7 61 479-539 133-195 (429)
264 3lpz_A GET4 (YOR164C homolog); 77.2 47 0.0016 31.0 23.6 83 439-540 133-215 (336)
265 3esl_A Checkpoint serine/threo 76.4 28 0.00095 29.6 10.5 54 211-264 95-148 (202)
266 2wpv_A GET4, UPF0363 protein Y 76.3 49 0.0017 30.6 22.7 82 440-540 132-216 (312)
267 4b4t_R RPN7, 26S proteasome re 75.3 15 0.00052 36.1 10.3 61 162-222 133-195 (429)
268 1y8m_A FIS1; mitochondria, unk 71.1 37 0.0013 27.0 15.1 73 298-372 36-111 (144)
269 2p58_C Putative type III secre 69.7 30 0.001 25.4 7.7 78 103-189 21-98 (116)
270 3esl_A Checkpoint serine/threo 69.4 41 0.0014 28.6 9.9 56 244-299 92-148 (202)
271 2uwj_G Type III export protein 66.0 29 0.001 25.4 7.0 77 104-189 21-97 (115)
272 1qsa_A Protein (soluble lytic 65.4 1.3E+02 0.0044 31.0 36.4 78 161-245 73-150 (618)
273 3ltm_A Alpha-REP4; protein eng 64.1 67 0.0023 27.3 17.7 18 229-246 93-110 (211)
274 1bpo_A Protein (clathrin); cla 62.3 78 0.0027 31.0 11.4 94 92-190 332-425 (494)
275 3ltm_A Alpha-REP4; protein eng 56.8 90 0.0031 26.4 19.1 153 124-294 32-184 (211)
276 2wvi_A Mitotic checkpoint seri 56.0 83 0.0028 25.7 9.9 51 214-264 79-129 (164)
277 1zbp_A Hypothetical protein VP 54.5 1.2E+02 0.0041 27.2 14.9 52 206-259 8-59 (273)
278 3eiq_C Programmed cell death p 54.5 92 0.0031 29.4 10.5 65 550-615 220-286 (358)
279 4a1g_A Mitotic checkpoint seri 52.2 48 0.0016 26.7 7.0 75 119-196 62-137 (152)
280 2d2s_A Exocyst complex compone 49.6 1E+02 0.0035 27.0 9.5 24 130-153 23-46 (235)
281 1wdy_A 2-5A-dependent ribonucl 48.4 32 0.0011 30.9 6.5 17 132-148 9-25 (285)
282 1wdy_A 2-5A-dependent ribonucl 47.1 34 0.0012 30.7 6.5 51 521-571 188-240 (285)
283 2r9g_A AAA ATPase, central reg 45.0 1.4E+02 0.0048 25.2 9.6 36 244-280 27-62 (204)
284 2wvi_A Mitotic checkpoint seri 44.7 54 0.0018 26.9 6.3 77 118-197 56-133 (164)
285 4aez_C MAD3, mitotic spindle c 43.4 42 0.0014 29.1 5.8 51 213-263 132-182 (223)
286 3eiq_C Programmed cell death p 42.0 1.7E+02 0.006 27.5 10.3 25 304-328 57-81 (358)
287 3ltj_A Alpharep-4; protein eng 40.8 1.6E+02 0.0054 24.6 18.3 49 229-281 88-136 (201)
288 2d2s_A Exocyst complex compone 40.5 1.7E+02 0.0057 25.7 9.4 90 483-575 24-119 (235)
289 3bge_A Predicted ATPase; struc 39.4 1.5E+02 0.0053 24.9 8.3 23 245-267 21-43 (201)
290 1k1a_A B-cell lymphoma 3-encod 39.3 43 0.0015 29.1 5.7 20 242-261 17-36 (241)
291 1k1a_A B-cell lymphoma 3-encod 37.6 68 0.0023 27.8 6.8 24 202-225 13-36 (241)
292 4aez_C MAD3, mitotic spindle c 37.4 79 0.0027 27.4 6.5 76 118-196 110-186 (223)
293 3t8k_A Uncharacterized protein 37.1 1.3E+02 0.0046 24.9 8.2 65 307-371 41-109 (186)
294 2qx5_A Nucleoporin NIC96; mRNA 35.8 3.9E+02 0.014 27.7 14.0 19 345-363 452-470 (661)
295 3ltj_A Alpharep-4; protein eng 33.8 2E+02 0.007 23.8 19.1 153 124-294 27-179 (201)
296 3ctd_A Putative ATPase, AAA fa 33.7 2.2E+02 0.0077 24.3 9.0 34 245-278 49-82 (213)
297 3t8k_A Uncharacterized protein 33.1 95 0.0033 25.9 6.6 64 237-300 41-108 (186)
298 2xig_A Ferric uptake regulatio 32.9 1.7E+02 0.0059 23.3 7.7 59 292-351 18-76 (150)
299 4gq2_M Nucleoporin NUP120; bet 32.8 5.3E+02 0.018 28.3 15.1 131 131-280 816-950 (950)
300 2ion_A PDCD4, programmed cell 30.6 2.1E+02 0.0072 23.0 7.9 23 271-293 14-36 (152)
301 4gq2_M Nucleoporin NUP120; bet 28.9 4.5E+02 0.015 28.8 12.5 49 583-631 898-950 (950)
302 4a1g_A Mitotic checkpoint seri 28.1 2.3E+02 0.008 22.7 13.8 51 214-264 84-134 (152)
303 1oyz_A Hypothetical protein YI 28.1 3.2E+02 0.011 24.2 23.7 168 131-316 43-221 (280)
304 4ets_A Ferric uptake regulatio 28.1 1E+02 0.0036 25.1 5.7 47 164-210 36-84 (162)
305 2fe3_A Peroxide operon regulat 27.8 1.6E+02 0.0055 23.3 6.7 58 292-350 13-70 (145)
306 4g8k_A 2-5A-dependent ribonucl 27.7 2E+02 0.0067 26.5 8.5 14 534-547 316-329 (337)
307 2nsz_A Programmed cell death p 27.3 2.2E+02 0.0074 22.1 9.3 99 270-369 11-119 (129)
308 1ug3_A EIF4GI, eukaryotic prot 26.0 1.7E+02 0.0058 27.4 7.5 147 305-467 15-166 (339)
309 4ets_A Ferric uptake regulatio 25.2 1.4E+02 0.0047 24.3 5.9 14 281-294 47-60 (162)
310 1qsa_A Protein (soluble lytic 24.9 5.8E+02 0.02 26.2 35.5 347 117-501 64-437 (618)
311 3eu9_A Huntingtin-interacting 24.8 70 0.0024 27.6 4.5 53 554-610 181-235 (240)
312 3eyy_A Putative iron uptake re 24.6 1.8E+02 0.006 23.1 6.3 34 141-174 33-66 (145)
313 4b4t_S RPN3, 26S proteasome re 24.2 5.4E+02 0.019 25.7 11.8 66 160-225 231-300 (523)
314 3jxi_A Vanilloid receptor-rela 24.1 53 0.0018 29.1 3.6 20 242-261 13-32 (260)
315 2r9g_A AAA ATPase, central reg 24.0 3.3E+02 0.011 23.0 9.6 32 491-523 28-59 (204)
316 1mzb_A Ferric uptake regulatio 23.8 1.7E+02 0.0058 22.8 6.1 58 292-350 9-67 (136)
317 2fu4_A Ferric uptake regulatio 23.7 1.8E+02 0.0062 20.0 6.1 33 599-631 34-66 (83)
318 3kea_A K1L; tropism, ANK repea 23.7 1.1E+02 0.0036 27.7 5.6 22 270-291 162-183 (285)
319 3kea_A K1L; tropism, ANK repea 23.4 1E+02 0.0035 27.8 5.4 19 414-432 165-183 (285)
320 2ion_A PDCD4, programmed cell 23.3 2.9E+02 0.0099 22.1 8.3 22 200-221 14-35 (152)
321 3mv2_A Coatomer subunit alpha; 22.7 4.6E+02 0.016 24.2 11.9 131 487-634 124-260 (325)
322 2ijq_A Hypothetical protein; s 22.5 3.1E+02 0.011 22.2 8.1 53 312-364 43-103 (161)
323 3f3f_C Nucleoporin NUP85; stru 22.5 2.6E+02 0.009 28.2 8.2 72 176-250 497-568 (570)
324 3eu9_A Huntingtin-interacting 22.3 96 0.0033 26.7 4.8 17 414-430 181-197 (240)
325 3eyy_A Putative iron uptake re 22.2 1.5E+02 0.0052 23.5 5.5 57 292-350 10-66 (145)
326 3l6a_A Eukaryotic translation 22.1 5E+02 0.017 24.5 11.6 216 409-630 14-246 (364)
327 2ijq_A Hypothetical protein; s 22.1 3.2E+02 0.011 22.2 8.7 57 483-540 39-103 (161)
328 2w57_A Ferric uptake regulatio 21.8 1.9E+02 0.0066 23.0 6.1 59 292-351 8-67 (150)
329 3bge_A Predicted ATPase; struc 21.7 3.7E+02 0.013 22.7 8.1 21 491-511 21-41 (201)
330 3pvs_A Replication-associated 21.4 5.7E+02 0.02 24.9 13.8 37 279-315 268-304 (447)
331 2zu6_B Programmed cell death p 21.4 4.7E+02 0.016 23.9 11.5 238 305-545 7-278 (307)
332 2o03_A Probable zinc uptake re 21.3 1.3E+02 0.0046 23.2 4.9 43 132-174 17-59 (131)
333 4g8k_A 2-5A-dependent ribonucl 21.3 3.8E+02 0.013 24.4 9.2 19 131-149 28-46 (337)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-40 Score=354.96 Aligned_cols=490 Identities=10% Similarity=-0.010 Sum_probs=419.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
++...|+.++..+.+.|++++|..+++++.. ..|+..++..++.+|.+.|++++|..+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4678999999999999999999999999986 5678899999999999999999999999998654 67999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC--------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEG--------------NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
.+|.+.|++++|+++|+++.... ...++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999643322 011358899999999999999999999999999864 235666
Q ss_pred HHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006614 269 YTTLVSIYFKLGEVEKAL--GL-VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~--~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 345 (638)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 776766555444333222 11 455555555556667888889999999999999999999876 4799999999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 346 LGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425 (638)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 425 (638)
|.+.|++++|.++|+++.+.+. .+..+++.++..+...|+..++ ..+++.+.... +.+..++..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKL-YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHH-HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999987663 3778899999999999999888 88888887543 5578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 667889999999999999999999999999986 446789999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 006614 506 LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 506 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999876 66787 7899999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+..+|..+..+|.+.|++++|.+.++++.+.. +-+...|..+...|
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 478999999999999999999999999999752 33455665555544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-39 Score=346.22 Aligned_cols=465 Identities=12% Similarity=0.020 Sum_probs=403.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++.... ++..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHHHH
Confidence 357788999999999999999999999999864 6788999999999999999999999999986542 78999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKEN---------------GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
++..|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|+++|++|.+.++. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 999999999999999999953321 23446889999999999999999999999999987654 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHH--H-HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 006614 302 YTYTELIKGLGRAGRVEDAYG--L-FMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
..+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.+.
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 677777665554443332221 1 555555555556677888899999999999999999999775 48999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 006614 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
..+.+.|+..++ ..+|+++...+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++
T Consensus 313 ~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 313 DTLFVRSRFIDV-LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHTTCHHHH-HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHH-HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999888 88889888764 3477889999999999999999999999999765 77899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (638)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999886 44578899999999999999999999999998864 457889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006614 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 347899999999999999999999999999874 66787 7899999999999999999999999999764
Q ss_pred CCCCHHhHHHHHHHHhccCCccCC
Q 006614 613 FEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
+.+..+|..+..+|.+.|++++|
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHH
Confidence 55889999999999999998765
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=6e-31 Score=269.05 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=118.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC---------CHHHHHHHHHHHHhCCCCCCHHHH
Q 006614 445 YCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---------RLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
++.+|++|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+ .+++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 33444444444444444444444444444444444444444444332 256666777777777777777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 516 NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777777777777777777777767777777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 596 GMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
|++++|.+++++|.+.|..|+..||+.|++.|...
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 77777777777777767777777777776666543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.2e-27 Score=237.90 Aligned_cols=380 Identities=14% Similarity=0.080 Sum_probs=219.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455566677777777776666542 4445556666666666677777777666665542 33566666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++.+..+ .+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777666543 345566666666666666666666666666542 22344555566666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
+.+..+. +..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++.....
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 6655332 4556666666666666666666666666655432 45555555566666666666655555443311
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006614 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
+.+..++..+..++.+.|++++|...++++.+.+ +.++.++..+...
T Consensus 234 --------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 234 --------------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred --------------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 1133445555566666666666666666666554 4445556666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 006614 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665554 33445555555555555555555555555555432 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 532 YSLLRRMEEDGCVPDINSHNIILNGLAK 559 (638)
Q Consensus 532 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 559 (638)
...|+++.+.. +.+...|..+...+..
T Consensus 359 ~~~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 359 LMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 55555555432 1124444444444433
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.1e-27 Score=237.13 Aligned_cols=378 Identities=18% Similarity=0.145 Sum_probs=174.4
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.|++++|.+.++++.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 233333344444444444444444444444321 2234444444444444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|++.|+++.+..+. +..+|..+...+.+.|++++|...|+++.+..+. +...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444443221 3334444444444555555555555444443222 233344444444455555555555554433
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006614 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAA 444 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 444 (638)
.. | .+..+|..+...+.+.|++++|...|+++.+.+ +.+...
T Consensus 164 ~~--p-----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 164 TQ--P-----------------------------------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HC--T-----------------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hC--C-----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 11 1 112233333344444444444444444444432 333444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 006614 445 YCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR 524 (638)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 524 (638)
+..+...+...|++++|...+.+..+. .+.+..++..+...|...|++++|...|+++.+.. +.+..+|..+...+.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSL-SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 444444444444444444444444443 12234444555555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARL 604 (638)
Q Consensus 525 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 604 (638)
.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555542 3345555555555555666666666665555421 12345555555666666666666666
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 605 MKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 605 ~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
++++.+.. +.+...|..+...+...
T Consensus 362 ~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 362 YKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 66555321 22233444444444433
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.1e-30 Score=262.86 Aligned_cols=211 Identities=17% Similarity=0.188 Sum_probs=181.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC------
Q 006614 385 KAPASEASAWFEKMKANGVLPSP-FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR------ 457 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 457 (638)
|+....++.+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 33444456677777777766654 45888999999999999999999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006614 458 ---YEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 458 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 006614 535 LRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 535 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
|++|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-23 Score=218.15 Aligned_cols=440 Identities=9% Similarity=-0.039 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|......+.+.|++++|+..|+++++.. |++.++..++.++.+.|++++|...|+++.+.++ .+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567788888899999999999999988854 6888899999999999999999999999887753 377888889999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.|++++|+..|+++...++ ++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999888765 45555555555554444344444444333222222221111111000001111111
Q ss_pred HHHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCC--------CCHHHH
Q 006614 285 ALGLVQEMKGKGC---------ALTVYTYTELIKGLGR---AGRVEDAYGLFMNMLK-----EGCK--------PDIVLI 339 (638)
Q Consensus 285 A~~~~~~m~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~--------p~~~~~ 339 (638)
...+...+..... +.+...+......+.. .|++++|...|+++.+ ..-. .+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111110 1113344444444443 6777777777777776 2111 124466
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
..+...+...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+...+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEY-YNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTG-GGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHH-HHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 667777777777777777777776644 3355555666666666666555 55555555442 2345567777777778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 006614 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888777764 556677777777777888888888888777765 334566777777777778888888887
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 500 FNEMKKLRC-KPD----VYTYNALMSGMVR---AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 500 ~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777765321 111 2367777777777 788888888887777653 2356677777777778888888888887
Q ss_pred HhhhC
Q 006614 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+..+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77753
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-23 Score=218.31 Aligned_cols=445 Identities=11% Similarity=-0.014 Sum_probs=331.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+......+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|++.|+++.+.++ .+...+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHH
Confidence 3456777888999999999999999998874 6899999999999999999999999999998775 67789999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.+.+.|++++|...|+++.+.+ +++......++..+.+......+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999875 345555556666555554445554444443333222222222111111111111111
Q ss_pred HHHHHHHHHHcCC---------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----CCCCC--------ChhhH
Q 006614 320 AYGLFMNMLKEGC---------KPDIVLINNLINVLGR---AGRLEDALKLFNKMEA-----LQCKP--------NVVTY 374 (638)
Q Consensus 320 A~~~~~~~~~~~~---------~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~p--------~~~~~ 374 (638)
...+...+..... +.+...+......+.. .|++++|...++++.+ ....| +...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1124455555555554 8999999999999987 32122 34567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
..+...+...|+..++ ...++.+.... |+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A-~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGA-HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHH-HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH-HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 7777788888988887 77778777654 338888999999999999999999999999875 6678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 006614 455 AKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKEL-DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHT-CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999986 34467789999999999999999999999998763 34567888999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 535 LRRMEEDGCV-PD----INSHNIILNGLAK---SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 535 ~~~m~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
++++.+.... ++ ...+..+...+.. .|++++|...++++.... +.+..++..+..++.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999874211 12 3488889999999 999999999999998743 2367888999999999999999999999
Q ss_pred HHHhCCCCCCHH
Q 006614 607 DMNAKGFEYDQI 618 (638)
Q Consensus 607 ~m~~~~~~p~~~ 618 (638)
+..+. .|+..
T Consensus 474 ~a~~~--~~~~~ 483 (514)
T 2gw1_A 474 ESADL--ARTME 483 (514)
T ss_dssp HHHHH--CSSHH
T ss_pred HHHHh--ccccH
Confidence 99964 45543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8e-22 Score=202.74 Aligned_cols=371 Identities=12% Similarity=0.082 Sum_probs=214.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..++..+.+.|++++|+..|+++.+..+ .+...+..+...+...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 555566666666666666666666666665543 455666666666666666666666666666543 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTV---YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
..|.+.|++++|.+.|+++.+.++. +. ..+..++..+.. ..+..+...+.+.|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 6666666666666666666554321 22 333333332211 11223344566778
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006614 351 RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLL 430 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 430 (638)
++++|...++.+.+.. | .+...+..+..+|.+.|++++|...+
T Consensus 158 ~~~~A~~~~~~~~~~~--~-----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC--V-----------------------------------WDAELRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp CHHHHHHHHHHHHHHC--T-----------------------------------TCHHHHHHHHHHHHHTTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHhC--C-----------------------------------CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888776532 1 13334444555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHccCCHHHHHH
Q 006614 431 EEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM------------IKHFGKCGRLSDAVD 498 (638)
Q Consensus 431 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~ 498 (638)
+++.+.. +.+..++..++..+...|++++|...|+++.+. .+.+...+..+ ...+...|++++|..
T Consensus 201 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 278 (450)
T 2y4t_A 201 KAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278 (450)
T ss_dssp HHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555443 344555555555555555555555555555543 12223333322 666677777777777
Q ss_pred HHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 499 LFNEMKKLRCKPD-----VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 499 ~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
.|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++
T Consensus 279 ~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 279 KYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777776642 33 3356666677777777777777777776642 235667777777777777777777777777
Q ss_pred hhCCCCC-CHHHHHHHHH------------HHHccC-----CHHHHHHHHHHHHhCCCCCC-----------HHhHHHHH
Q 006614 574 QHSEIKP-DAVSYNTILG------------CLSRAG-----MFEEAARLMKDMNAKGFEYD-----------QITYSSIL 624 (638)
Q Consensus 574 ~~~~~~p-~~~~~~~l~~------------~~~~~g-----~~~~A~~~~~~m~~~~~~p~-----------~~~~~~l~ 624 (638)
.+. .| +...+..+.. .|...| +.+++.+.++++... ..|| ...+..+.
T Consensus 356 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~ 432 (450)
T 2y4t_A 356 QEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIA 432 (450)
T ss_dssp HTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHH
T ss_pred HHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHH
Confidence 653 33 3444444442 233334 567778888763321 2333 23788888
Q ss_pred HHHhccCCccCC
Q 006614 625 EAVGKVDEDRNP 636 (638)
Q Consensus 625 ~~~~~~g~~~~a 636 (638)
+++...|+.++.
T Consensus 433 ~ay~~L~d~~~r 444 (450)
T 2y4t_A 433 AAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHSSGGGGC
T ss_pred HHHHHhCCHHHH
Confidence 888888887764
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.1e-21 Score=201.73 Aligned_cols=339 Identities=9% Similarity=0.021 Sum_probs=221.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+...|..++..+.+.|++++|...|+.+++. .+.+..++..++.++.+.|++++|...|+++.+.++. +..++..++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 34455555555555555555555555555543 2334555555555555555555555555555544322 445555555
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
..|.+.|++++|.+.|+++.+..+ .+. ..+..++..+.. ..+..+...+.+.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 555555555555555555555432 222 333333322111 1122335557888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
|++++|++.++++.+..+. +...+..++..+.+.|++++|...|+++.+..+ .+..++..++..|...|++++|...|
T Consensus 157 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998876543 788899999999999999999999999988643 37889999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006614 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (638)
+++.... |+.......+..+ . ....+..+...+.+.|++++|...|+++.+.. +
T Consensus 235 ~~~~~~~--p~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p 288 (450)
T 2y4t_A 235 RECLKLD--QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-P 288 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHhC--CChHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 9987643 4443332222111 0 01123445778888999999999999988753 3
Q ss_pred CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHH
Q 006614 440 PC----PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYT 514 (638)
Q Consensus 440 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 514 (638)
.+ ...+..+...+.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...|+++.+. .|+ ...
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 365 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQI 365 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHH
Confidence 33 346777888888888888888888888775 3456778888888888888888888888888774 343 444
Q ss_pred HHHHH
Q 006614 515 YNALM 519 (638)
Q Consensus 515 ~~~l~ 519 (638)
+..+.
T Consensus 366 ~~~l~ 370 (450)
T 2y4t_A 366 REGLE 370 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.3e-21 Score=206.13 Aligned_cols=434 Identities=12% Similarity=0.042 Sum_probs=308.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|+++++.. +.++.++..+..++.+.|++++|+..|+++.+..+ .+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4577888899999999999999999998864 56788999999999999999999999999988753 378889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
+...|++++|++.|+ .....+ +. ....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~---~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG---DF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC---CC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 443332 21 1222344555566678888888886531 011111123344445566666
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 006614 283 EKALGLVQEMKGKGCALTVY-TYTELIKGLGR--------AGRVEDAYGLFMNMLKEGCKPD-------IVLINNLINVL 346 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~li~~~ 346 (638)
+.+...+...... .+... ....+...+.. .|++++|..+|+++.+..+. + ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 6665554433322 12211 22223222222 24788888888888876433 2 23466667778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKA 426 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 426 (638)
...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+..++..+...+...|++++|
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEF-FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHH-HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHH-HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88888899998888887754 5566777777777777777777 66666666543 34677888888899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...|+++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999988875 566788888999999999999999999998886 4456778888899999999999999999887654
Q ss_pred C-----CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 507 R-----CKPDVYTYNALMSGMVRA----------GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 507 ~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
. .......+..+...+... |++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 111122234445666777 99999999999988864 3367888889999999999999999999
Q ss_pred HhhhC
Q 006614 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+..+.
T Consensus 487 ~al~~ 491 (537)
T 3fp2_A 487 DSAIL 491 (537)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=7.3e-22 Score=208.03 Aligned_cols=429 Identities=13% Similarity=0.061 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+..+...+.+.|++++|+..|+++.+..+ .+..+|..+..+|.+.|++++|++.|+++.+.++ .+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 45677888899999999999999999988753 3889999999999999999999999999998875 67889999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHh
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG------CALTVYTYTELIKGLGR 313 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~ 313 (638)
.+...|++++|+..|+.+.. .|+ .....+..+...+...+|...++++.... ..|+... +..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHH
Confidence 99999999999999964322 222 22233445566666788999998886541 2233333 344555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHHHHCCCCCC--------hhhHHH
Q 006614 314 AGRVEDAYGLFMNMLKEGCKPDI-VLINNLINVLGRA--------GRLEDALKLFNKMEALQCKPN--------VVTYNT 376 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 376 (638)
..+.+.+...+...... .+.. .....+...+... |++++|..+++.+.+.. |+ ...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 66666665554443322 2222 2333333333322 47899999999998754 44 224555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 006614 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
+-..+...++..++ ...++..... .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 249 ~g~~~~~~~~~~~A-~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 249 TGIFHFLKNNLLDA-QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHTTCHHHH-HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccHHHH-HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 55667777887777 7777777765 4568889999999999999999999999999876 678899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR 536 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (638)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999873 4567889999999999999999999999998864 4456788899999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 006614 537 RMEEDG-----CVPDINSHNIILNGLAKS----------GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601 (638)
Q Consensus 537 ~m~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 601 (638)
++.+.. .......+......+... |++++|...|+++.+.. +.+...+..+..++.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 988642 111223344556677777 99999999999998743 23678899999999999999999
Q ss_pred HHHHHHHHhC
Q 006614 602 ARLMKDMNAK 611 (638)
Q Consensus 602 ~~~~~~m~~~ 611 (638)
.+.+++..+.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.2e-18 Score=171.08 Aligned_cols=325 Identities=9% Similarity=0.036 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
+..|..+...+.+.|++++|...++.+++.. +.++.++..+...+...|++++|...|+++.+..+ .+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 3455556666666666666666666655532 34455556666666666666666666666555422 245555556666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFP---D-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+...|++++|...|+++.+.. | + ...+..+..... ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 666666666666666665543 3 1 111111111000 111233467788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998888876543 6778888888888999999999999988877543 77888888889999999999999998
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (638)
...+.. |+...... .+..+. .......+...+.+.|++++|...++++.+.. +.
T Consensus 213 ~a~~~~--~~~~~~~~-----------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 266 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFA-----------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 266 (359)
T ss_dssp HHHHHC--TTCHHHHH-----------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHhhC--ccchHHHH-----------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 887643 33222111 111111 11223334666788888888888888887764 33
Q ss_pred CHH----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 441 CPA----AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 441 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
+.. .+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...|++..+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332 2444566666777777777777766664 3345566666666666666666666666666654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=3.5e-18 Score=169.53 Aligned_cols=328 Identities=9% Similarity=0.037 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|+..|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3444444555555555555555555544433 334445555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKGKGCA--LTVYTYT------------ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+...|++++|.+.++++.+..+. .+...+. .+...+...|++++|...++++.+..+. +..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 55555555555555555543220 0222222 2245556666666666666666655332 4555566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-------------------------------------SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-------------------------------------SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHHHcC
Confidence 6666666666666666665554421 123344555566666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...+++..+.. +.+...+..+... . .......+...+.+.|++++|...++
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777666666543 3333322211100 0 01112223455666666677776666
Q ss_pred HHHhCCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006614 502 EMKKLRCKPD-V----YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 502 ~m~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
++.+.. |+ . ..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...|+++.+.
T Consensus 259 ~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 259 SVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666543 22 2 223445566667777777777777776642 225666777777777777777777777777653
Q ss_pred CCCCC-HHHHHHHHHHHH
Q 006614 577 EIKPD-AVSYNTILGCLS 593 (638)
Q Consensus 577 ~~~p~-~~~~~~l~~~~~ 593 (638)
.|+ ...+..+..+..
T Consensus 336 --~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 336 --NENDQQIREGLEKAQR 351 (359)
T ss_dssp --CTTCHHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHH
Confidence 233 444555554443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.8e-16 Score=162.88 Aligned_cols=352 Identities=14% Similarity=0.088 Sum_probs=218.9
Q ss_pred CHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCC
Q 006614 159 GPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPD 230 (638)
Q Consensus 159 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 230 (638)
++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 45555555555555 555666666666555542 45555555555555 555666666666555532 3
Q ss_pred HHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH
Q 006614 231 TVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 231 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444445555544 455555555555555543 44455555555554 455555555555555543 444
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCChhhH
Q 006614 303 TYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 303 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
.+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|..+|++..+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~---------- 251 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE---------- 251 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------
Confidence 55555555544 455555555555555443 33444444444443 4455555555554433
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
.| +...+..+...|.. .++.++|+..|++..+.| ++..+..+..
T Consensus 252 --------------------------~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 252 --------------------------QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp --------------------------TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred --------------------------CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 32 23344445555555 678888888888877654 4566677777
Q ss_pred HHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006614 451 GYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522 (638)
Q Consensus 451 ~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 522 (638)
.|... ++.++|...|++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 77766 78888888888887763 3456667777776655 7788888888888764 667777888888
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 006614 523 VR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 523 ~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 577 (638)
.. .+++++|.+.|++..+.| +...+..+...|.+ .+++++|...|++..+.+
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 788888999988888865 56777778888887 788899999998888765
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=9.2e-16 Score=158.95 Aligned_cols=364 Identities=11% Similarity=-0.000 Sum_probs=284.7
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 006614 108 KIQFFKWAGRRRNFEHNSTTYMALIRCLDE----TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKA 179 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 179 (638)
++..+..+.... ++.++..+...|.. .+++++|+..++...+.| ++..+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 355555444433 77888889999988 899999999999998854 67889999999998 8999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAI 251 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 251 (638)
...|++..+.| +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|.
T Consensus 99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998874 78888899999998 889999999999998864 56677888888876 78999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGL 323 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 323 (638)
+.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 78899999999998 899999999999999875 66788888888886 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 324 FMNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 324 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a-------------------------- 293 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDG-------------------------- 293 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHH--------------------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHH--------------------------
Confidence 99998864 56677778888877 788999988888876543 2222
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHc
Q 006614 400 ANGVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK---RYEAANELFLELKEY 471 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~ 471 (638)
+..+...|... +++++|...+++..+.+ +...+..+...|...| +.++|.+.|++..+.
T Consensus 294 ----------~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 294 ----------QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp ----------HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred ----------HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 22233333333 67777777777777654 4456666666666545 677777777777765
Q ss_pred CCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 006614 472 CGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 542 (638)
.+...+..+...|.. .+++++|...|++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 345666777777776 677888888888777754 45667777777776 778888888888887765
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1.3e-16 Score=167.09 Aligned_cols=432 Identities=10% Similarity=0.075 Sum_probs=291.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006614 148 IQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+++.++. .+-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 3444443 3557788888888 477899999999999998863 4478889999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHH-HccCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 006614 228 FPDTVTYSALISAF-GKLGRDISAIR----LFDEMKEN-GLQP-TAKIYTTLVSIYFK---------LGEVEKALGLVQE 291 (638)
Q Consensus 228 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 291 (638)
|+...|...+... ...|+.++|.+ +|+...+. |..| +...|...+....+ .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6776777666533 34577777665 66666543 5443 46677777776654 6788888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------HC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME------AL 365 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~ 365 (638)
..+.........|..........|. .+...++. .+.+++..|..+++.+. +.
T Consensus 156 al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 156 GCVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp HTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 8873111112233322221111110 01111110 12234555555555421 11
Q ss_pred C---CCCC--------hhhHHHHHHHHHhc----CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------c
Q 006614 366 Q---CKPN--------VVTYNTVIKSLFES----KAP---ASEASAWFEKMKANGVLPSPFTYSILIDGFCK-------T 420 (638)
Q Consensus 366 ~---~~p~--------~~~~~~ll~~~~~~----~~~---~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~ 420 (638)
. +.|+ ...|...+...... ++. ...+...|++.... .+.+...|..++..+.+ .
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhc
Confidence 1 1222 12344333222211 111 12234556666554 24467788888877775 6
Q ss_pred CCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccCC
Q 006614 421 NRVE-------KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKCGR 492 (638)
Q Consensus 421 g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 492 (638)
|+++ +|..++++..+.-.|.+...+..++..+.+.|++++|..+|+++.+.. +.+ ...|...+..+.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence 8887 899999999873236678899999999999999999999999999852 223 3589999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006614 493 LSDAVDLFNEMKKLRCKPDVYTYNALMS-GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+++|..+|++..+.. +.+...|..... .+...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999998753 122222322222 2346899999999999998863 3368889999999999999999999999
Q ss_pred HhhhCC-CCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006614 572 KMQHSE-IKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 572 ~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
+....+ ..|+ ...|...+....+.|+.+.+..+.+++.+.
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998753 2332 457888888888899999999999998864
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=3.5e-16 Score=163.81 Aligned_cols=424 Identities=12% Similarity=0.076 Sum_probs=278.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
|.+..+|..++. +.+.|++++|..+|+.+++. .|.+...|...+..+.+.|++++|..+|++.... .|++..|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 458889999998 47899999999999999885 4667889999999999999999999999999987 3688888877
Q ss_pred HHHH-HhcCCHhHHHH----HHHHHHhC-CCCCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHCCCCCCH
Q 006614 202 ILML-MQEGYYEKIHE----LYNEMCNE-GNCFPDTVTYSALISAFGK---------LGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+... -..|++++|.+ +|+..... |...++...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7543 34677776665 77777653 3222456777777776654 68899999999999883111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC---CCCC--
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM------LKEG---CKPD-- 335 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~p~-- 335 (638)
..|..........|. .+...++. ...+++..|..++.+. .+.. +.|+
T Consensus 166 ~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 333322221100110 00011110 0123344444444431 1111 1222
Q ss_pred ------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCChH------
Q 006614 336 ------IVLINNLINVLGRA----GRL----EDALKLFNKMEALQCKPNVVTYNTVIKSLFE-------SKAPA------ 388 (638)
Q Consensus 336 ------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~------ 388 (638)
...|...+...... ++. ..+..+|+++.... +-+...|..+...+.. .|+..
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23444444332221 122 35566666665532 1244555555555443 45544
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 389 SEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP-AAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 389 ~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
+.+..+++.....-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2336777776652234457788888888888899999999999988863 3343 5788888888888899999999999
Q ss_pred HHHcCCCCcHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 006614 468 LKEYCGCSSARVYAVMIKH-FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC-VP 545 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p 545 (638)
..+.. +.+...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 88753 2233333332222 346889999999999887753 33577888888888889999999999999988632 22
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 546 --DINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 546 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
....|...+......|+.+.+..+++++.+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245787788888888999999999988875
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=8.6e-18 Score=164.66 Aligned_cols=296 Identities=10% Similarity=-0.027 Sum_probs=210.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006614 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++..+...+..+...|++++|..+|+++.+..+ .+...+..++..+...|++++|...++++.+..+ .+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHH
Confidence 345566777777777778888888888888776533 2555666677777888888888888888877664 4667777
Q ss_pred HHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 236 ALISAFGKLG-RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 236 ~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|.+.++++.+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 7888888888 8888888888887653 335677888888888888888888888888776543 455666688888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006614 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 394 (638)
|++++|...+++..+..+. +..++..+...+...|++++|...++++.+.... .++
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~-------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA---------------IGN-------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------TSC--------
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------ccc--------
Confidence 8888888888888876543 6778888888888888888888888877552100 000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006614 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
....+.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+. .+
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 301 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RR 301 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CS
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CC
Confidence 00112334567777777888888888888888877764 556667777777777777777777777776664 23
Q ss_pred CcHHHHHHHHHHH
Q 006614 475 SSARVYAVMIKHF 487 (638)
Q Consensus 475 ~~~~~~~~li~~~ 487 (638)
.+...+..+..++
T Consensus 302 ~~~~~~~~l~~~~ 314 (330)
T 3hym_B 302 DDTFSVTMLGHCI 314 (330)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 3455566665555
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.1e-17 Score=163.93 Aligned_cols=294 Identities=11% Similarity=-0.016 Sum_probs=243.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006614 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
.+.+...+..++..+...|++++|.++++++++.. +.+...+..++..+.+.|++++|...++++.+..+ .+...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 34566678889999999999999999999998864 55667788888999999999999999999988643 37888999
Q ss_pred HHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006614 201 MILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+...+...| ++++|.+.|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 999999999 99999999999998775 567889999999999999999999999999864 33567788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCC
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--------CKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~ 351 (638)
|++++|.+.+++..+..+. +...+..+...+...|++++|...++++.+.. .+.+..++..+...+.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999987654 78899999999999999999999999998742 13346788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
+++|...+++..+.. +.+...+..+..++.+.|++++|...++
T Consensus 252 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 252 YAEALDYHRQALVLI-------------------------------------PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHHHHS-------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-------------------------------------ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999998876632 1234456667777888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHH-HccCCH
Q 006614 432 EMEEKGFPPCPAAYCSLINGY-GKAKRY 458 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~-~~~g~~ 458 (638)
+..+.. +.+...+..+..++ ...|+.
T Consensus 295 ~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 295 TALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 887765 56777777777777 455544
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=1.4e-14 Score=156.93 Aligned_cols=385 Identities=14% Similarity=0.128 Sum_probs=296.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..+|.--...+++|...|.+.+|+++++++...+ +.-+....+.++....+. +..+..+..++... .+ .
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d---~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YD---A 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----cc---H
Confidence 4466666788899999999999999999998432 123566777788777777 55666666666542 22 3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 4477888899999999999998631 2223333332 7789999999998652 578899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 006614 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~ 394 (638)
|++++|...|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.+..+|.+.++..+. ..+
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel-e~f 1189 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL-EEF 1189 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH-HHH
Confidence 9999999999764 378889999999999999999999999887755 3433344578888888765532 333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006614 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
.. .++...|..+.+.|...|++++|..+|... ..|..+...+++.|++++|.+.+.+.
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 22 356677888999999999999999999985 48999999999999999999999987
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 356889999999999999999998776532 356667789999999999999999998888653 23455666666
Q ss_pred HHHHhc--CChHHHHHHHHHhhhCCCCC------CHHHHHHHHHHHHccCCHHHHHH
Q 006614 555 NGLAKS--GGPKRAMEIFTKMQHSEIKP------DAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 555 ~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
..+++. ++..++.++|..-. ++.| +...|.-++-.|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 666554 46666666666443 3333 56779999999999999999983
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.1e-17 Score=166.62 Aligned_cols=122 Identities=10% Similarity=-0.008 Sum_probs=76.8
Q ss_pred cCCCHHHHHH-HHHHhhhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006614 172 KAKMVNKALS-IFYQIKSRKCK---PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
-.|++++|.. .|++....... .+...+..+...+.+.|++++|+..|+++.+..+ .+...+..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCH
Confidence 3466777776 66655443211 1345566677777777777777777777777654 5666777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006614 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
++|+..++++.+.. +.+..++..+...+...|++++|.+.++++....
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT 162 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777777777653 3366677777777777777777777777777654
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=1.6e-17 Score=165.51 Aligned_cols=305 Identities=10% Similarity=-0.015 Sum_probs=216.6
Q ss_pred ccCChHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 243 KLGRDISAIR-LFDEMKENGL---QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 243 ~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..|++++|++ .+++..+... ..+...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665543311 113456777888888888888888888888877543 6778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006614 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKM 398 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m 398 (638)
+|...|+++.+..+. +..++..+...|...|++++|.+.++++.... |+........... . . .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------~-~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG------A-G-------G 178 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH------h-h-------h
Confidence 888888888877543 77788888888888888888888888887754 3322111100000 0 0 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006614 399 KANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 399 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+ ...+..+.. +...|++++|...++++.+.. +. +..++..+...+...|++++|...++++.+. .+.+
T Consensus 179 ----~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~ 250 (368)
T 1fch_A 179 ----AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred ----hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCC
Confidence 000 011112222 337889999999999988765 33 6788889999999999999999999998886 4456
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----------C
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP----------D 546 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----------~ 546 (638)
..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+..... .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 7888999999999999999999999988763 4457788899999999999999999999888642111 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 006614 547 INSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
..+|..+..++...|++++|..++++..
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6789999999999999999998887544
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.2e-13 Score=149.69 Aligned_cols=442 Identities=10% Similarity=0.110 Sum_probs=302.2
Q ss_pred CChHHHHHHhccccchHHHHHHHHHhhhC--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHH
Q 006614 90 VDHRLVHQVLNIDVEINVKIQFFKWAGRR--RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSE 165 (638)
Q Consensus 90 ~~~~~~~~vl~~~~~~~~a~~~f~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 165 (638)
-++.+=..||.-.+ ..-.++.+|...- +. ..++.--...+++|...|++.+|+++++..+-.+- ..+....+.
T Consensus 951 ~d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e-~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLESN--PYRRPLIDQVVQTALSE-TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCCc--HHHHHHHHHHHHhhccc-ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 44555555553322 3345677775321 11 23444445678889999999999999999884321 134566677
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++....+. +..+......++... + ..-+...+...|.+++|..+|++.. -.....+.++. ..|
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHh
Confidence 77777766 556666666555432 2 3347788888999999999999862 12222333333 678
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
++++|.++.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.++|.
T Consensus 1091 nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999988855 25788889999999999999999999664 277888889999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 326 NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
...+... +....+.++.+|++.+++++..... + .++...|..+-..+...|+..+| ..+|...
T Consensus 1159 mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA-~~~Y~kA------- 1221 (1630)
T 1xi4_A 1159 MARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA-KLLYNNV------- 1221 (1630)
T ss_pred HHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH-HHHHHhh-------
Confidence 8877643 3333345888999998888644443 1 25666777777777777777766 6666664
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
..|..+..++++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHH
Confidence 37889999999999999999999876 356888888888888888888887766432 35667778888
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 006614 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA--GMIDDAYSLLRRMEEDGCVP------DINSHNIILNGL 557 (638)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~ 557 (638)
.|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-.. ++| +...|.-+.-.|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHH
Confidence 8999999999999998776553 33344565566666543 445555555554332 222 456788888888
Q ss_pred HhcCChHHHHHHHHHhhh-----------CCCCCCHHHHHHHHHHHHccC
Q 006614 558 AKSGGPKRAMEIFTKMQH-----------SEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~-----------~~~~p~~~~~~~l~~~~~~~g 596 (638)
.+.|+++.|....-+-.. -.-..|+..|...+.-|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 888888888732222110 011345666666666665554
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=183.05 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=117.3
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKK---LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNI 552 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 552 (638)
-..+|+++|++||+.|++++|..+|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356788888888888888888888877754 47888999999999999999999999999999998899999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HHhHHHHHH
Q 006614 553 ILNGLAKSGGP-KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD------QITYSSILE 625 (638)
Q Consensus 553 l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~ 625 (638)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.+..+. .+++.++++ .-++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99998888874 67888999998888889998888887665554 444444444 3355555 445555666
Q ss_pred HHhccC
Q 006614 626 AVGKVD 631 (638)
Q Consensus 626 ~~~~~g 631 (638)
-+.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8.1e-17 Score=156.58 Aligned_cols=379 Identities=12% Similarity=0.068 Sum_probs=156.4
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4556677777777662 2346777777777777777777777442 45556777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3456666777777777777777666663 245567777777777777777777777755
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~ 411 (638)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+...+ ...... +...+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA-~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-QMCGLH-----IVVHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-HHTTTT-----TTTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH-HHHHHH-----HHhCHhhHH
Confidence 25677777777777777777777766 2567777777777777776655 222111 223444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCC------cHHHHHHH
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA--KRYEAANELFLELKEYCGCS------SARVYAVM 483 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l 483 (638)
.++..|.+.|++++|+.+++...... +.....|+-+.-+|++- ++..+..+.|..-. ++++ +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHH
Confidence 68888999999999999999998776 66777888888888765 34555555554211 1222 35668899
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 484 IKHFGKCGRLSDAVDLFNEMKKLR-----------CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNI 552 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 552 (638)
...|...++++.|....-+-.... -..+...|-..+..|. +....++.-+...+... .|. +.
T Consensus 289 ~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld~---~r 361 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LDH---TR 361 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CCH---HH
T ss_pred HHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cCc---HH
Confidence 999999999998887443221100 0112333333344443 11111222222222111 111 22
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 553 ILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
.+..+.+.|.+.-+..++..+...+ +...=.++-..|....+++.-..-++
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3445556666666666666655432 23333355556667777665444433
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.3e-16 Score=158.86 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=159.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
+...+..+...+.+.|++++|++.|+++.+..+. +...|..+...+...|++++|...|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 4455777788888888888888888888776543 6778888888888888888888888888876543 6788888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 424 (638)
.|...|++++|...++++.+.. |+........ ......+..+...+...|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 9999999999999998887633 2211100000 012233455667778888888
Q ss_pred HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 425 KAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+|...++++.+.. +. ++.++..+...+...|++++|.+.++++.+. .+.+..+|..+..+|...|++++|...|++
T Consensus 195 ~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887764 33 5677777777777777777777777777665 334455666666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
+.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65542 22355566666666666666666666666554
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.2e-16 Score=155.30 Aligned_cols=289 Identities=13% Similarity=0.146 Sum_probs=127.5
Q ss_pred HHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
+..++...++.+.|.+|++.. +.+.+|..++.++.+.|++++|++.|.+ .+|+..|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC
Confidence 444555667789999999844 2335999999999999999999999964 367889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ + |+..+|..++..|...|++++|...|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~---pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----G---PNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----C---C----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----C---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999977766664 4567889999999999999999998874 1 77789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006614 255 DEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h
Confidence 976 47999999999999999999999988 288999999999999999999966655432 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCC------CH
Q 006614 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLP------SP 407 (638)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~-~~~~~------~~ 407 (638)
.+.-...++..|.+.|.+++|..+++...... +.....|+-+--.+.+- ++... .+.++.... -+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~-~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKM-REHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHH-HHHHHHHSTTSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHH-HHHHHHHHHHhcCcHHHHHHHHH
Confidence 44445578999999999999999999987654 33445555554443332 22222 222222222 12222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006614 408 FTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 408 ~~~~~li~~~~~~g~~~~A~~~ 429 (638)
..|..+...|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 5677888888888999888763
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=9.4e-17 Score=159.80 Aligned_cols=278 Identities=10% Similarity=-0.052 Sum_probs=216.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|...++.+++.. +.+..++..+...+.+.|++++|+..|+++.+..+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44568899999999999999999999998864 66788999999999999999999999999988743 37889999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHH----------HHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVT----------YSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIYTTL 272 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 272 (638)
.|...|++++|++.|+++.+..+ .+... +..+...+...|++++|++.++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999988653 22222 334578889999999999999999886421 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 352 (638)
...|...|++++|++.++++.+..+. +..+|..+...+...|++++|...|+++.+..+. +..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887544 7889999999999999999999999999987543 688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 432 (638)
++|...|+++.+.. |+...- .. ......+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~--~~~~~~-------------~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQ--RKSRNQ-------------QQ----------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHH--HCC-----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--cccCCC-------------cc----------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987632 111000 00 000011345677777777778888777766654
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=181.31 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEE---DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 586 (638)
.-..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 006614 587 TILGCLSRAGMF-EEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 587 ~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++|.++++.|+. ++|.++|++|.+.|+.||..||++++.++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999984 789999999999999999999995544443
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=2.8e-15 Score=154.83 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHHcCChHHHHH
Q 006614 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY--TYNALMS-GMVRAGMIDDAYS 533 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~ 533 (638)
..++|...++...+. .+.+...+..+...|...|++++|...|++..+....+... .+..+.. .....|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777765 33445567778888888899999998888887764332211 2222222 2346788899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-
Q 006614 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKG- 612 (638)
Q Consensus 534 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 612 (638)
.|++.++. .|+...... ..+.+.+++++....+ +.+..+|..+..+|...|++++|.+.|++.++.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99888875 344332221 2234455555555432 3356788889999999999999999999988743
Q ss_pred CCCCHHhH
Q 006614 613 FEYDQITY 620 (638)
Q Consensus 613 ~~p~~~~~ 620 (638)
..|+..+|
T Consensus 462 ~~p~a~~~ 469 (472)
T 4g1t_A 462 LIPSASSW 469 (472)
T ss_dssp --------
T ss_pred CCCcHhhc
Confidence 44554443
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=3.7e-15 Score=153.89 Aligned_cols=150 Identities=15% Similarity=0.015 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHH-HHHccCCHHHHHH
Q 006614 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIK-HFGKCGRLSDAVD 498 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~ 498 (638)
.+++|...+++..+.. +.+..++..+...+...|++++|...|++..+....+.. ..+..+.. .+...|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3566777777776654 556667777888888888888888888887775433221 12222222 2346788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-
Q 006614 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE- 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 577 (638)
.|++..+. .|+...... ....+..++++.++.. +.+..+|..+...|...|++++|++.|++..+.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888775 354332222 2234455566665543 3467788888888999999999999999888643
Q ss_pred CCCCHHH
Q 006614 578 IKPDAVS 584 (638)
Q Consensus 578 ~~p~~~~ 584 (638)
..|+..+
T Consensus 462 ~~p~a~~ 468 (472)
T 4g1t_A 462 LIPSASS 468 (472)
T ss_dssp -------
T ss_pred CCCcHhh
Confidence 3344443
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.2e-15 Score=149.05 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=85.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 006614 311 LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
+...|++++|...++++.+..+. +..++..+...+.+.|++++|.+.++++.+..
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------------------------ 202 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR------------------------ 202 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------
Confidence 45556666666666666655332 55566666666666666666666666554311
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 391 ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 391 ~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 203 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 203 -------------PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1233445555666666666666666666666543 44555666666666666666666666666554
Q ss_pred cCCCC-----------cHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 471 YCGCS-----------SARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 471 ~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
..... +...+..+..++.+.|++++|..+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 269 MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 32211 34445555555555555555555544
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.2e-15 Score=145.64 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=141.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGP--SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+.....|+++.|+..++.... ..|+. .....+.++|...|++++|+..++.. .+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 334456666666666655433 22222 23344566666666666666544331 23455566666666666666
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
.++|++.++++...+..+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666665432113445555556666666666666666665 2456666666666666666666666666
Q ss_pred HHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006614 291 EMKGKGCALTVYTY---TELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 291 ~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.....
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666553 222111 122233334466667777776666653 23666666666666667777777776666655431
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006614 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~ 400 (638)
-+..++..+...+...|+..+++..+++++.+
T Consensus 232 -~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 -GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 13444555555555555555444455555444
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=1.3e-15 Score=148.94 Aligned_cols=277 Identities=9% Similarity=-0.021 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3467788889999999999999999988763 5578889999999999999999999999998874 3378889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH--------------HH-HHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL--------------IS-AFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+...|++++|++.|+++.+..+ .+...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998764 233333333 22 3677889999999999988764 3477888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA 349 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 349 (638)
..+...+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 89999999999999999999998877543 6788888999999999999999999998887543 677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 429 (638)
|++++|.+.++++.+.. |+.... ... .....+...+..+..++.+.|++++|..+
T Consensus 254 g~~~~A~~~~~~a~~~~--~~~~~~-------------~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ--VGGTTP-------------TGE----------ASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp TCHHHHHHHHHHHHHHH--TTSCC----------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--Cccccc-------------ccc----------chhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999998876532 110000 000 00011345666777777888888888777
Q ss_pred HHHH
Q 006614 430 LEEM 433 (638)
Q Consensus 430 ~~~~ 433 (638)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 7643
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3.3e-15 Score=142.54 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=127.1
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
....|++..|+..+++.....+.........+.++|...|++++|+..++. .. .|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCCCcHHH
Confidence 344566666666666554432211123444455666666666666655433 11 1555566666666666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 250 AIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 250 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666665554323 344455555666666666666666554 2345555555555555555555555555555
Q ss_pred HcCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 329 KEGCKPDIVLI---NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 329 ~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
+.. |+.... ...+..+...|++++|..+|+++.+. .+.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-------------------------------------~p~ 198 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-------------------------------------CSP 198 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------------------------------------SCC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-------------------------------------CCC
Confidence 543 221100 11222222334444444444444331 123
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA-ANELFLELKE 470 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~ 470 (638)
+...++.+..++.+.|++++|...+++..+.. |.++.++..++..+...|+.++ +.++++++.+
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555555543 4455555555555555555443 3445555544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=6.5e-15 Score=134.16 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
++..|..+...+.+.|++++|...++..++.. +.++..+..+...+.+.|++++|+..|++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34455555555555555555555555555432 334455555555555555555555555555544322 4445555555
Q ss_pred HHHhc-----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006614 204 MLMQE-----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 204 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
++.+. |++++|+..|++..+..+ .+...+..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 55555 555555555555444433 234444444444444444444444444444433 344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
...|...|++++|+..+++..+..+. +...+..+...+...|++++|...|+
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444444444444443322 33444444444444444444444443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2e-14 Score=135.04 Aligned_cols=226 Identities=10% Similarity=0.010 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC--C----HHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--T----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 198 (638)
...|..+...+...|++++|...++..++.. .++.++..+..++...|++++|...|++..+..... + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678899999999999999999999999876 788999999999999999999999999987753221 2 6889
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...+...|++++|++.|+++.... |+. ..+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 999999999999999999999999865 443 34666788999999999998863 3356788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
.|++++|.+.+++..+..+. +...+..+...+...|++++|...+++..+..+. +..++..+...+.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999987654 7889999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHHC
Q 006614 359 FNKMEAL 365 (638)
Q Consensus 359 ~~~~~~~ 365 (638)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998663
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.5e-14 Score=131.73 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=164.2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
++++..+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+..+ .+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHH
Confidence 567788889999999999999999999999887543 888999999999999999999999999999876 67888999
Q ss_pred HHHHHHcc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 237 LISAFGKL-----------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 237 l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
+...+... |++++|+..+++..+.. +.+...+..+...+...|++++|+..|++..+.+ .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999999 99999999999998863 3367889999999999999999999999999887 5888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999987554 77888899999999999999999888753
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=2.5e-14 Score=145.75 Aligned_cols=376 Identities=14% Similarity=0.060 Sum_probs=162.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
...+.+.|++++|..+|.+..+.| +..++..+...|...|+. ++|+++|++..+. +...+..+...+..
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Confidence 334444555555555555554432 233333444444444544 5555555555432 22233333332322
Q ss_pred cC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 244 LG-----RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE---KALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 244 ~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.| +.++|...|++..+.| +...+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 22 4455555555555543 2224444444444433322 2333333333333 2334444555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006614 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEAS 392 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 392 (638)
.++++........+.-...+...+..+...|.+.| +.++|.+.|++..+.|.. +
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~---------------------- 212 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-T---------------------- 212 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-C----------------------
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-H----------------------
Confidence 44333333222222111112225666666666666 666666666666554421 1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHH
Q 006614 393 AWFEKMKANGVLPSPFTYSILIDGFCKT----NRVEKAHLLLEEMEEKGFPPCPAAYCSLING-Y--GKAKRYEAANELF 465 (638)
Q Consensus 393 ~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~ 465 (638)
...+..+...|... +++++|+..|++.. . .++..+..+... + ...++.++|.+.|
T Consensus 213 --------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 213 --------------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp --------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 11112222222221 45555555555554 2 233444444444 2 3455666666666
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHH
Q 006614 466 LELKEYCGCSSARVYAVMIKHFGKCG-----RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLR 536 (638)
Q Consensus 466 ~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 536 (638)
++..+.| +...+..+...|. .| ++++|...|++.. . .+...+..|...|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 6655543 3444445555554 33 6666666666555 2 244455555554444 236666777766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 537 RMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 537 ~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+..+.|. ......|...|.. ..+.++|..+|+...+.|. ++.......+......++.++|.++.++..
T Consensus 347 ~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 347 TAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6666552 2233344444442 3366677777776666553 222222222222223344555666555544
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.7e-13 Score=126.85 Aligned_cols=202 Identities=9% Similarity=0.002 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|.+.++++++.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4566677777777777777777777766542 34556666666666666666666666666655432 255666666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|++.|+++...+..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666511111234455555666666666666666666655542 2245555555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666655555432 24445555555555555555555555555554
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=3.1e-13 Score=123.78 Aligned_cols=200 Identities=10% Similarity=-0.019 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++....+ .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 344444444444455555555554444432 12344455555555555555555555555554433 344455555555
Q ss_pred HHcc-CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 241 FGKL-GRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+... |++++|...++++.+.+..| +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555421112 2344555555555555555555555555544322 3555555555566666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+|...++++.+..+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666555543312444555555555556666666666655543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.1e-13 Score=140.87 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=135.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV---NKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+...+.+.|++++|.+.|+...+.| ++..+..+...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788899999999999987765 344556666777777877 8999999988864 6667777777666
Q ss_pred hcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 207 QEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 207 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..| ++++|+..|++..+.+. ++ .+..|...|...+.. .++.+.+....+.| +...+..|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 655 78899999999988765 44 666677777665543 34555565555554 45677778888888
Q ss_pred cCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 006614 279 LGEV----EKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA-- 349 (638)
Q Consensus 279 ~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-- 349 (638)
.+.+ +++..+++..... +...+..+...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 7754 4444444444332 3337788888888899 899999999999988754 666656677777655
Q ss_pred --CCHHHHHHHHHHHH
Q 006614 350 --GRLEDALKLFNKME 363 (638)
Q Consensus 350 --g~~~~A~~~~~~~~ 363 (638)
+++++|.++|++..
T Consensus 229 ~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA 244 (452)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHc
Confidence 68889988888876
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.5e-12 Score=121.84 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
++.++..+...+...|++++|...|+...+ +.++..+..+...+.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 677888999999999999999999999888 4466788889999999 999999999999998875 788999
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006614 200 SMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|+..+++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999 999999999999998863 67788888999988 999999999999999875 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006614 272 LVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 272 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 343 (638)
+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888988 999999999999998874 56788888888988 999999999999999875 367788888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 006614 344 NVLGR----AGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 344 ~~~~~----~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+ .+++++|.+.|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 89988 899999999999988765
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.4e-13 Score=127.58 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006614 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK--PD----IVLINN 341 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 341 (638)
.+..+...+...|++++|.+.+++..+.. .+...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555444 34455555555555555555555555555443211 11 344555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006614 342 LINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+...+...|++++|...++++..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555544
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=6.8e-13 Score=124.07 Aligned_cols=211 Identities=10% Similarity=0.025 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+ .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 4567788888999999999999999988764 33788899999999999999999999999988765 57788899999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 240 AFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
.+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998733334 5677888899999999999999999998887543 6788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006614 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
+|...++++.+... .+...+..+...+.+.|+.++|.+.++.+.+.. |+...+..+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 248 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 99999999887644 477788888899999999999999999998754 554444433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=3.2e-13 Score=127.96 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 202 (638)
+..+......+...|++++|...+++.++.. +.+...+..+...+.+.|++++|+..|++..+.+.. ....+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677889999999999999999998853 445668889999999999999999999999884322 2244588999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
..+...|++++|++.|++..+..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998775 567889999999999999999999999998763 44677788787344455699
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 006614 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR---VEDAYGLFMNMLKEG-CKPD------IVLINNLINVLGRAGRL 352 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~g~~ 352 (638)
++|.+.++++.+..+. +...+..+...+...|+ +++|...+++..+.. ..|+ ..++..+...|.+.|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999887544 57788888888888888 888999888887642 1122 25778888999999999
Q ss_pred HHHHHHHHHHHHCC
Q 006614 353 EDALKLFNKMEALQ 366 (638)
Q Consensus 353 ~~A~~~~~~~~~~~ 366 (638)
++|.+.++++.+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998754
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1e-13 Score=128.84 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.+..|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45667777777788888888888888777642 44667777777777788888888888877766532 36677777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777888888888877777654 466677777777777777777777777776652 235666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+|.+.++++.+.... +..++..+...+...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777665432 56666677777777777777777777776654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=5e-13 Score=131.75 Aligned_cols=245 Identities=10% Similarity=0.073 Sum_probs=206.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+|+.+..++.+.|++++|+..++.+++.. +-+..+|+.+..++.+.|+ +++|+..|+++.+..+. +...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 35788889999999999999999999999863 5678899999999999997 99999999999987554 889999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK-LGE 281 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~ 281 (638)
.++...|++++|+..|+++++..+ .+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999886 688999999999999999999999999999874 3478899999999999 666
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----
Q 006614 282 VEKA-----LGLVQEMKGKGCALTVYTYTELIKGLGRAG--RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---- 350 (638)
Q Consensus 282 ~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---- 350 (638)
.++| ++.+++.+...+. +...|..+...+...| ++++|+..+.++ +. .+.+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888887655 7888999888898888 689999999888 43 3346788889999998874
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCChh-hHHHHH
Q 006614 351 -----RLEDALKLFNKM-EALQCKPNVV-TYNTVI 378 (638)
Q Consensus 351 -----~~~~A~~~~~~~-~~~~~~p~~~-~~~~ll 378 (638)
..++|.++++++ .+.. |... .|..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~ 360 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD--TIRKEYWRYIG 360 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 258999999998 5533 5443 343333
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=1e-10 Score=123.02 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=163.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAH-LLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 392 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
..++++.... ++-+...|...+..+...|+.++|. .+|++.... +|.+...+...+...-+.|++++|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555443 3446777888888888888888886 999988875 366777778888888889999999999998876
Q ss_pred cC----------CCC-----------cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc-CC
Q 006614 471 YC----------GCS-----------SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA-GM 527 (638)
Q Consensus 471 ~~----------~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~ 527 (638)
.. .+. ...+|...+....+.|+.+.|..+|.+..+. + ......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 41 111 2346777788778889999999999998875 2 11222332222222233 45
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 006614 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP--DAVSYNTILGCLSRAGMFEEAARLM 605 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (638)
.+.|..+|+..++. .+-+...+...+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999886 34466777788888888999999999999988753211 3467888888888899999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHH
Q 006614 606 KDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 606 ~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+++.+. .|+......+.+-|
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHh--CCCCcHHHHHHHHh
Confidence 999875 34444445555444
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.1e-12 Score=120.21 Aligned_cols=207 Identities=14% Similarity=-0.012 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+..+|..+...+...|++++|.+.++.+++.. +.+..++..+...+...|++++|...|+++.+... .+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 3457789999999999999999999999998853 55688999999999999999999999999987643 378899999
Q ss_pred HHHHHhc-CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 202 ILMLMQE-GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 202 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
...+... |++++|.+.|+++.+.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 99999999999999832221346788999999999999999999999998864 346888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006614 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++++|.+.++++.+..+..+...+..+...+...|+.++|..+++.+.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999887552477788888888999999999999999988753
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.1e-13 Score=124.70 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006614 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
..+..+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|++.|+++.+..+ .+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHH
Confidence 4556788888899999999999999999988643 3788999999999999999999999999998765 678889999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.... +...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 447888999999999999999999999999887543 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
++|...++++.+.... +..++..+...|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999887543 68889999999999999999999999998754
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.6e-13 Score=130.28 Aligned_cols=247 Identities=11% Similarity=0.006 Sum_probs=168.1
Q ss_pred ccchHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 006614 102 DVEINVKIQFFKWAGRRRNF--EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
.++.+.|+..|..+...... +.+..+|..+..++...|++++|...++.+++.. +.++.++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45667788888877654221 1246778888888888888888888888887753 45677888888888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
...|+++.+..+ .+...+..+...|.+.|++++|.+.|+++.+..+ +......++..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888877633 2677788888888888888888888888887653 333344444455666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006614 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 336 (638)
.. +++...+ .++..+...++.++|.+.+++........ +...+..+...+.+.|++++|...|++..+..+. +.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 249 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF 249 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH
Confidence 42 3343333 36667777777888888887776543211 1456777777788888888888888887765422 22
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 006614 337 VLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 337 ~~~~~li~~~~~~g~~~~A~~~~ 359 (638)
.....++...|++++|.+.+
T Consensus 250 ---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 ---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHhhHHHH
Confidence 22244555666666666554
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.1e-12 Score=122.29 Aligned_cols=255 Identities=12% Similarity=0.077 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSAL 237 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 237 (638)
+..+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++...... ++ ...|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHHH
Confidence 445556667777777888888888777766432 4556777777777778888888877777763211 22 2346777
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++++|++.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+. +...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777653 235567777777777777777777777777665332 555666666233344477
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCChHHHHHH
Q 006614 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR---LEDALKLFNKMEALQC-KPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (638)
++|...|+++.+..+. +...+..+...+...|+ +++|...++++.+... .|+.. .
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------~---- 217 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY----------------K---- 217 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG----------------H----
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc----------------h----
Confidence 7777777777765433 45566666666666666 5666666665543110 00000 0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 394 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
..-...|..+...|.+.|++++|...+++..+.. |.+......+..
T Consensus 218 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 218 ----------DELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred ----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 0012356667777888888888888888887765 555555554443
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2e-12 Score=127.50 Aligned_cols=197 Identities=9% Similarity=0.074 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..++..+...+.+.|++++|+..|+++.+..+. +...|+.+..++...|+ +++|+..|++++...+ .+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 456777777888888888888888888776433 67788888888888886 8888888888888765 5677788888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 317 (638)
..+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++++.++. +...|+.+...+.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888887753 336677777777777788888888888877776654 67777777777777 5554
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHH
Q 006614 318 EDA-----YGLFMNMLKEGCKPDIVLINNLINVLGRAG--RLEDALKLFNKM 362 (638)
Q Consensus 318 ~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 362 (638)
++| +..|++.++..+. +...|+.+...+.+.| ++++|.+.+.++
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 666 3666666665443 5566666666666655 355555554443
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.8e-13 Score=127.60 Aligned_cols=225 Identities=13% Similarity=0.032 Sum_probs=169.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 135 LDETRMIGVMWKSIQDMVRSTC---VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+...|++++|+..++++++... +.+..++..+...+...|++++|...|+++.+..+ .+..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence 3446788899999998887532 12456788888888899999999999998887643 3688888888999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++.+..+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999888765 56778888888888999999999999988875 35544444555556777889999988877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
....... +...+ .++..+...++.++|...+++..+..... +..++..+...|.+.|++++|...|+++....
T Consensus 170 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7765432 33333 36667777888888888888876543211 14677788888888888888888888887643
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=4.1e-11 Score=113.42 Aligned_cols=224 Identities=15% Similarity=0.008 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li 414 (638)
+..++..+...|...|++++|.+.|++..+. .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------~~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------KENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------------------------------------TCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------------------------------------CCHHHHHHHH
Confidence 4556666666677777777777777665541 1233444555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006614 415 DGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK----AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 415 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
..+.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH
Confidence 56666 777788888887777765 56777777777777 788888888888777763 56677777777
Q ss_pred HHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006614 487 FGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 487 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 558 (638)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 777 788888888888887764 55666777777777 788888888888888764 5667777778888
Q ss_pred h----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 006614 559 K----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 559 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 612 (638)
. .+++++|...|++..+.+ +...+..+...|.+ .|++++|.+.+++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8 888888888888887653 26667777778877 888888888888887654
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.51 E-value=5.4e-10 Score=117.65 Aligned_cols=414 Identities=8% Similarity=0.043 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCC-CCCCHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRK-CKPTANT 197 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~ 197 (638)
+.|..+|..+++.+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|+ ++.+..+|++..... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468999999999999999999999999999886 57788899999999888888 999999999998873 1378999
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHhC-CC-CCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHH
Q 006614 198 YNSMILMLMQEGYY--------EKIHELYNEMCNE-GN-CFPDTVTYSALISAFGK---------LGRDISAIRLFDEMK 258 (638)
Q Consensus 198 ~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~ 258 (638)
|...+....+.+.. +.+.++|+..+.. |. ...+...|...+..... .++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888776665543 3455788887653 32 22345677777765442 345677888999888
Q ss_pred HCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC--CCC---------------C-----C---
Q 006614 259 ENGLQPTAKIYTTLVSIYFK-------------LGEVEKALGLVQEMKGK--GCA---------------L-----T--- 300 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--~~~---------------~-----~--- 300 (638)
......-..+|......--. ..+++.|...+.++... ++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 63221112333222111100 11233344444332210 110 0 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCChh
Q 006614 301 VYTYTELIKGLGRAG-------RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL-KLFNKMEALQCKPNVV 372 (638)
Q Consensus 301 ~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~ 372 (638)
...|...+..--..+ ..+....+|++.+...+. +...|...+..+...|+.++|. ++|++.... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 123333333222211 012234456665554222 5556666666666666666664 666666542 222333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 373 TYNTVIKSLFESKAPASEASAWFEKMKANG---------VLPS------------PFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~ 431 (638)
.|-..+...-..++.+.+ ..+|+.+.... -.|+ ...|...+....+.|..+.|..+|.
T Consensus 380 Lwl~~a~~ee~~~~~e~a-R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEI-ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444455554433 55555554321 0021 1245555555555666666666666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006614 432 EMEEK-GFPPCPAAYCSLINGYGKA-KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 432 ~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
...+. + ......|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 66554 2 12223333333322233 3366666666666655 3344555555566555666666666666666554311
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 006614 510 P--DVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 510 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (638)
+ ....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 2344555555555666666666666666654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=5.5e-12 Score=127.04 Aligned_cols=246 Identities=18% Similarity=0.072 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TA 266 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~ 266 (638)
....+......+...|++++|+..|+++.+..+..+. ...+..+...+...|++++|...+++..+. +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4444555556666666666666666666655431111 234555566666666666666666654322 1111 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGR--------------------VEDAY 321 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~ 321 (638)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666666777777777777776665542100 11 3466667777777777 77777
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 006614 322 GLFMNMLKE----GCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFE 396 (638)
Q Consensus 322 ~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 396 (638)
..+++..+. +..| ...++..+...|...|++++|...+++..+.. -..++...
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~------- 225 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKAA------- 225 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH---------------HHTTCHHH-------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------------HhcCCcHH-------
Confidence 777766542 1111 13466777778888888888888887765411 00111000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 397 KMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 397 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
...++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+
T Consensus 226 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 226 ---------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 123566677778888888888888877654210 011 33455555566666666666666655543
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=5.4e-11 Score=114.68 Aligned_cols=220 Identities=15% Similarity=0.130 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------cCCCH-------HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILG-------KAKMV-------NKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
++|...|++++.. .+.++..|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5677778777764 3567777877777765 35775 8888888888873123367788888888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF-KLGEVEKA 285 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A 285 (638)
.|++++|.++|+++++..+ .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999888653 2333 78888888888888999999998888764 234455544443322 36889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 286 LGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG-CKP--DIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 362 (638)
.++|+...+..+. +...|..++..+.+.|++++|..+|++.++.. ..| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888776443 67788888888888899999999999888863 343 4667888888888889999998888888
Q ss_pred HHCC
Q 006614 363 EALQ 366 (638)
Q Consensus 363 ~~~~ 366 (638)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=3.6e-12 Score=128.42 Aligned_cols=302 Identities=12% Similarity=0.044 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHH
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD----IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN 375 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 375 (638)
....+......+...|++++|...|+++.+.+.. + ..++..+...|...|++++|...+++.....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 4445555566666666777777666666665322 2 2456666667777777777777776654310
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHH
Q 006614 376 TVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLIN 450 (638)
Q Consensus 376 ~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~ 450 (638)
-..++.. .....+..+...+...|++++|...+++..+... ..+ ..++..+..
T Consensus 78 ------~~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ------RTIGDQL----------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ------HHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HhccccH----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 0000000 0122344455556666666666666665543210 011 235555666
Q ss_pred HHHccCC--------------------HHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 451 GYGKAKR--------------------YEAANELFLELKEY----CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 451 ~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
.+...|+ +++|.+.+.+..+. +. +....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666655432 10 11134566666677777777777777766543
Q ss_pred CCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 506 LRC-KPD----VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV-PD----INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 506 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
... .++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011 235666677777777777777777776642100 11 44566677777777777777777777654
Q ss_pred C----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHhHHHHHHHHhccCCc
Q 006614 576 S----EIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAK----GFEY-DQITYSSILEAVGKVDED 633 (638)
Q Consensus 576 ~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~ 633 (638)
. +-.+ ...++..+..+|.+.|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1 1111 1445666777777777777777777775542 1111 123455555666555554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.1e-11 Score=125.33 Aligned_cols=280 Identities=14% Similarity=0.031 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhC----C-CCCCH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR----K-CKPTA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 195 (638)
...+..+...+...|++++|...++++++.. +.++ .++..+...+...|++++|...|++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455667788899999999999999998863 3333 47888889999999999999999887653 1 12245
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHccCC-----------------hHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN----CFPDTVTYSALISAFGKLGR-----------------DISAIRLF 254 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 254 (638)
.++..+...|...|++++|.+.|++...... ......++..+...+...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788889999999999999999998776421 11234578888889999999 89999888
Q ss_pred HHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006614 255 DEMKEN----GLQ-PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 255 ~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
++..+. +.. ....++..+...|...|++++|++.+++..+.... .+ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876542 111 12347788888999999999999999887654211 12 236778888899999999999999
Q ss_pred HHHHHcCCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006614 325 MNMLKEGCK-----PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 325 ~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~ 399 (638)
++..+.... ....++..+...|...|++++|...+++..... -..++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~----------- 340 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA---------------QELGDRI----------- 340 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHCCChH-----------
Confidence 888764211 114567788888899999999999888875411 0001100
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 400 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 436 (638)
....++..+...|...|++++|...+++..+.
T Consensus 341 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 -----GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01335667778888899999999988887764
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=6.8e-12 Score=126.74 Aligned_cols=236 Identities=17% Similarity=0.046 Sum_probs=120.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKEN----GL-QPTAKIYTTL 272 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~l 272 (638)
...+...|++++|+..|+++.+..+ .+. ..+..+...+...|++++|...+++..+. +. +....++..+
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444444444444444444332 111 23444444444444444444444443321 00 1123344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGK----G-CALTVYTYTELIKGLGRAGR-----------------VEDAYGLFMNMLKE 330 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~ 330 (638)
...|...|++++|.+.+++..+. + ......++..+...+...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555554432 0 01123355556666666666 66666666655432
Q ss_pred ----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006614 331 ----GC-KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 331 ----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~ 405 (638)
+. .....++..+...|...|++++|.+.+++..+.. -..++...
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~---------------- 261 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA---------------REFGDRAA---------------- 261 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHHH----------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---------------HhcCCcHH----------------
Confidence 11 1123466777788888888888888888765411 00011000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF--P---PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 406 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
....+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...+++...
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123566677778888888888888877664310 0 1133455555556666666666665555443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.4e-11 Score=108.78 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...|..+...|.+.|++++|++.|++.++..+ .+...+..+...+.+.|++++|+..++...... +.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34444444444444444444444444444433 344444444444444444444444444444332 123344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006614 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 354 (638)
.+...++++.|.+.+.+.....+. +...+..+...+.+.|++++|+..|++..+..+. +..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 444555555555555544443322 3444445555555555555555555555544322 44455555555555555555
Q ss_pred HHHHHHHHHH
Q 006614 355 ALKLFNKMEA 364 (638)
Q Consensus 355 A~~~~~~~~~ 364 (638)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.4e-11 Score=108.72 Aligned_cols=166 Identities=10% Similarity=0.067 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
++.+|..+..++.+.|++++|++.|++.++.. +-++.++..+..++.+.|++++|...+.+....... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34445555555555555555555555554432 334444455555555555555555555544443221 3444444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...++++.|.+.+++.....+ .+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 44455555555555555444433 334444444444444444444444444444432 123444444444444444444
Q ss_pred HHHHHHHHHHh
Q 006614 284 KALGLVQEMKG 294 (638)
Q Consensus 284 ~A~~~~~~m~~ 294 (638)
+|++.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=4.3e-11 Score=115.39 Aligned_cols=221 Identities=6% Similarity=-0.010 Sum_probs=180.7
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDE-------TRMI-------GVMWKSIQDMVRSTCVMGPSVLSEIVNILG 171 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (638)
+.|+..|+.+.... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46777888776644 5688899988888763 5886 899999999988423556779999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HccCChHH
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF-GKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 249 (638)
+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+..+ ++...|....... ...|+.++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986332 344 899999999999999999999999998765 4444554443332 23699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-CAL--TVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 3478899999999999999999999999999863 344 567889999999999999999999999
Q ss_pred HHHcCC
Q 006614 327 MLKEGC 332 (638)
Q Consensus 327 ~~~~~~ 332 (638)
+.+..+
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 988643
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=4e-12 Score=124.24 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhC----CC-CCCHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSR----KC-KPTAN 196 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 196 (638)
..+......+...|++++|...++++++.. +.+ ..++..+...+...|++++|...+++..+. +. .....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345566777888888888888888887753 223 356777888888888888888888776442 11 11355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCC--------------------hHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGR--------------------DISAIR 252 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 252 (638)
++..+...+...|++++|.+.+++..+..+..++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777788888888888888888887653221122 3366777777777777 777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 253 LFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-----ALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 253 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
.+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77665432 1111 233566666677777777777777766653210 0012255556666666666666666
Q ss_pred HHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 323 LFMNMLKEGCK-PD----IVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 323 ~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+++..+.... .+ ..++..+...+...|++++|...+++..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66665542110 01 3345555666666666666666666553
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=7.2e-12 Score=128.41 Aligned_cols=215 Identities=11% Similarity=0.023 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV-NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 219 (638)
++++...+++.... .+.+...+..+...+...|++ ++|+..|++..+..+. +...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555566555443 244667777777777777777 7777777777665322 56777777777777777777777777
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHcc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 006614 220 EMCNEGNCFPDTVTYSALISAFGKL---------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL--------GEV 282 (638)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 282 (638)
+..+.. |+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777755 5567777777777777 77777777777777653 33567777777777777 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 283 EKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 360 (638)
++|++.|++..+..+. -+...|..+...|...|++++|...|++..+..+. +...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888877775431 26777777888888888888888888887776443 56667777777777777777776554
Q ss_pred HH
Q 006614 361 KM 362 (638)
Q Consensus 361 ~~ 362 (638)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=6.1e-12 Score=122.94 Aligned_cols=237 Identities=19% Similarity=0.095 Sum_probs=119.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYT 270 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~ 270 (638)
.....+...|++++|+..|+++.+..+ .+ ...+..+...+...|++++|.+.+++..+. +..+ ...++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334445555555555555555555432 12 234445555555555555555555544321 1111 233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGC-ALT----VYTYTELIKGLGRAGR--------------------VEDAYGLFM 325 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 325 (638)
.+...+...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 556666666666666666655543210 011 2355555666666666 666666665
Q ss_pred HHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006614 326 NMLKE----GCK-PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 326 ~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~ 400 (638)
+..+. +.. ....++..+...+...|++++|...+++..+.. -..++..
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~------------ 220 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKA------------ 220 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------HHHTCHH------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---------------HhcCChH------------
Confidence 55431 111 113356666777777777777777777664310 0000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 401 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
....++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..
T Consensus 221 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 221 ----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0123455666777777788877777776653210 011 2344444555555555555555554443
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=7.1e-12 Score=128.46 Aligned_cols=215 Identities=10% Similarity=-0.042 Sum_probs=187.3
Q ss_pred chHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMI-GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
..+.+++.+....... +.+...|..+..++...|++ ++|.+.+++.++.. +.+..++..+..+|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3556677776554433 46889999999999999999 99999999998863 55688999999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc--------C
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQE---------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL--------G 245 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 245 (638)
|++..+. .|+...+..+...|... |++++|++.|++..+..+ .+...|..+...+... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999987 46678999999999999 999999999999999876 6788999999999998 9
Q ss_pred ChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 246 RDISAIRLFDEMKENGLQ---PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
++++|++.|++..+.. + .+...|..+...|...|++++|.+.|++..+..+. +...+..+...+...|++++|..
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999863 2 37889999999999999999999999999987654 67788899999999999999988
Q ss_pred HHHHH
Q 006614 323 LFMNM 327 (638)
Q Consensus 323 ~~~~~ 327 (638)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=126.09 Aligned_cols=242 Identities=14% Similarity=0.098 Sum_probs=173.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-----
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR----- 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 189 (638)
+....+|..+...+...|++++|...++++++. ..+....++..+...+...|++++|...|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999998873 23445677888999999999999999999988754
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-
Q 006614 190 -K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN- 260 (638)
Q Consensus 190 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 260 (638)
+ .+....++..+...|...|++++|.+.|+++.+. +........+..+...+...|++++|++.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 2334667888999999999999999999998765 221134567888899999999999999999998764
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHHHhcCCHHHH
Q 006614 261 -----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-------CALT-------VYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 261 -----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~-------~~~~~~li~~~~~~g~~~~A 320 (638)
+..| ...++..+...|...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 35578889999999999999999999987531 1111 11222223344455566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
...+....... +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666665542 22556788899999999999999999998765
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=5.7e-11 Score=118.62 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=152.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-----DIVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-----~~~~~~ 340 (638)
....+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888888888888887764 1111 2456777888888889999888888887763111 1 235778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 420 (638)
.+...|...|++++|.+.+++..+.. -..++... ...++..+..+|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~----------------~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA---------------EAEKQPQL----------------MGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHH----------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---------------HHcCChHH----------------HHHHHHHHHHHHHHC
Confidence 88889999999999999998876511 01111110 123567788889999
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHccC
Q 006614 421 NRVEKAHLLLEEMEEK----GF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEYC----GCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 421 g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 491 (638)
|++++|...+++..+. +. +....++..+...+.+.|++++|...+++..+.. .+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999988762 22 3445678888888888888888888888776531 1111222455556666666
Q ss_pred C---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 492 R---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 492 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 55555555543 11122 23444555566666666666666665553
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=8e-11 Score=117.53 Aligned_cols=299 Identities=9% Similarity=0.025 Sum_probs=188.7
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHH--HcCCCHHHHH-----------HHHHHhhhCCCCCCHHH-
Q 006614 136 DETRMIGVMWKSIQDMVRS--TCVMGPS--VLSEIVNIL--GKAKMVNKAL-----------SIFYQIKSRKCKPTANT- 197 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~- 197 (638)
.+.+++++|..+++++.+. ....+.. .|..++..- .-.+.++.+. ..++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 4578888888888876553 2223332 333333321 1223333444 5666654421 11122
Q ss_pred -----HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--C----
Q 006614 198 -----YNSMILMLMQEGYYEKIHELYNEMCNEGNCFP----DTVTYSALISAFGKLGRDISAIRLFDEMKENG--L---- 262 (638)
Q Consensus 198 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~---- 262 (638)
+......+...|++++|++.|++..+.....+ ...++..+...+...|++++|+..+++..+.- .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 22356677889999999999999877421112 24678888899999999999999998877531 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 006614 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GC- 332 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~- 332 (638)
.....+++.+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112457888889999999999999999887753111 11 247778888999999999999999988872 22
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 412 (638)
+....++..+...|.+.|++++|...+++..+.. -..++.. ....+..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~-----------------~~~~~~~ 308 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS---------------QKAGDVI-----------------YLSEFEF 308 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------------HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHH-----------------HHHHHHH
Confidence 3346678888999999999999999998875421 0001100 0112344
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 413 LIDGFCKTNR---VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 413 li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+...+...|+ +++|+.++++.. ..+.....+..+...|...|++++|...+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666676 566666665541 1112233555566666667777777666666554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=3.1e-11 Score=116.55 Aligned_cols=238 Identities=14% Similarity=0.118 Sum_probs=136.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 006614 371 VVTYNTVIKSLFESKAPASEASAWFEKMKAN-------GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK------G 437 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 437 (638)
...+..+...+...|+..++ ..+++..... ..+.....+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVA-VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666666666776666 5555555542 12223455666777777777777777777776543 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 006614 438 -FPPCPAAYCSLINGYGKAKRYEAANELFLELKEY------CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--- 506 (638)
Q Consensus 438 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 506 (638)
.+....++..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223456666777777777777777777776653 11 223455666777777777777777777776553
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCChHHHHH
Q 006614 507 ---RCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED-------GCVPD-------INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 507 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
+..|+ ..++..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 345666677777777777777777777642 01111 1111222222334445555555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.++...... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554321 22456788899999999999999999998874
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.3e-10 Score=100.77 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=62.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+..+ .+...+..+...+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhc
Confidence 33334444444444444444433311 1333444444444444444444444444443322 23333444444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006614 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 91 KYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444443321 123333333444444444444444444443333211 23333333444444444444444443
Q ss_pred HH
Q 006614 326 NM 327 (638)
Q Consensus 326 ~~ 327 (638)
+.
T Consensus 169 ~~ 170 (186)
T 3as5_A 169 KA 170 (186)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=2.5e-10 Score=100.55 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4577888899999999999999999887653 5578889999999999999999999999998764 3478889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998765 678889999999999999999999999998864 4468899999999999999999
Q ss_pred HHHHHHHHHhC
Q 006614 285 ALGLVQEMKGK 295 (638)
Q Consensus 285 A~~~~~~m~~~ 295 (638)
|.+.+++..+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998765
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=1e-10 Score=124.61 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+|+.+..++.+.|++++|++.|++.++.. +-+..+++.+..+|.+.|++++|+..|++..+.... +..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34555666666666666666666666555532 334455555555555555555555555555554322 4555555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
+|.+.|++++|++.|++.++..+ .+...|+.+...+...|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 55555555555555555555443 344555555555555555555555555555432 123444555555555555555
Q ss_pred HHHHHHHHHH
Q 006614 284 KALGLVQEMK 293 (638)
Q Consensus 284 ~A~~~~~~m~ 293 (638)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=5.3e-09 Score=103.82 Aligned_cols=265 Identities=15% Similarity=0.074 Sum_probs=115.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCh----hhHHHHHHH
Q 006614 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIV----LINNLINVLGRAGRLEDALKLFNKMEALQCK-PNV----VTYNTVIKS 380 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~ll~~ 380 (638)
.+...|++++|...+++........+.. +++.+...+...|++++|...+++....... .+. ..+..+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666666555543222221 3444555566666666666666655431100 000 111222222
Q ss_pred HHhcCChHHHHHHHHHHHH----hCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHH
Q 006614 381 LFESKAPASEASAWFEKMK----ANGVL--P-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP----PCPAAYCSLI 449 (638)
Q Consensus 381 ~~~~~~~~~~~~~~~~~m~----~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li 449 (638)
+...|+..++ ...++... ..+.. | ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 103 ~~~~G~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 103 LFAQGFLQTA-WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHTTCHHHH-HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHCCCHHHH-HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 3333333333 22222221 11111 1 1233444555555666666666666655443211 0123444555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 006614 450 NGYGKAKRYEAANELFLELKEYCGCSS--ARVYA----VMIKHFGKCGRLSDAVDLFNEMKKLRCKPD---VYTYNALMS 520 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~ 520 (638)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 555556666666666655544211111 11111 122234455666666666555543321110 123344455
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 521 GMVRAGMIDDAYSLLRRMEED----GCVPDI-NSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555556666666555555432 111111 1334444555555666666655555553
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.8e-09 Score=107.39 Aligned_cols=235 Identities=9% Similarity=0.002 Sum_probs=157.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CC-CHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKGKGC-ALT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC-----KP-DIVLI 339 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p-~~~~~ 339 (638)
.....+...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556788899999999888875411 122 45677788888899999999998888776311 11 24567
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~ 419 (638)
+.+...|...|++++|.+.+++..+. .-..++.. ....++..+..+|..
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~---------------~~~~~~~~----------------~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALEL---------------AMDIQNDR----------------FIAISLLNIANSYDR 234 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---------------HHHcCCHH----------------HHHHHHHHHHHHHHH
Confidence 78888999999999999999887541 01111111 012456778888999
Q ss_pred cCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHcc
Q 006614 420 TNRVEKAHLLLEEMEE-----KGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG----CSSARVYAVMIKHFGKC 490 (638)
Q Consensus 420 ~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~ 490 (638)
.|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... +.....+..+...+...
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~ 313 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKET 313 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999998876 33 33466788888888888888888888888876422 22234455566666666
Q ss_pred CC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006614 491 GR---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 491 g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
++ +++|+..+++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 314 ~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 314 VDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 66666666552 11222 23445566666777777777777766654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=6.5e-10 Score=101.87 Aligned_cols=208 Identities=8% Similarity=0.009 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.++..|......+...|++++|...|+..++...+++...+..+..++.+.|++++|+..|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678899999999999999999999999998754478888888999999999999999999999987543 677899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDT-------VTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTL 272 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l 272 (638)
..|...|++++|++.|++..+..+ .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998775 444 56888888899999999999999999986 344 5677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
...|...| ...++++...+.. +...|.... ....+.+++|...|++..+..+. +..+...+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 88776544 4445555555432 444554443 33456789999999999987544 4555544433
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.7e-10 Score=123.06 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+..+++.+...+.+.|++++|+..|++..+..+. +..+|+.+..+|.+.|++++|++.|++.++..+ .+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4556667777777777777777777776665322 566667777777777777777777777766554 4566666666
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..+...|++++|++.|++..+.. +-+...|+.+...|.+.|++++|++.|++..+..+. +...+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 77777777777777776666542 224566666666666666666666666666665433 5566666666666666666
Q ss_pred HHHHHHHHHHH
Q 006614 319 DAYGLFMNMLK 329 (638)
Q Consensus 319 ~A~~~~~~~~~ 329 (638)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=4.5e-09 Score=104.38 Aligned_cols=132 Identities=9% Similarity=-0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CCC--C-CH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKEN----GLQ--P-TA 266 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~ 266 (638)
++.+...+...|++++|.+.+++.....+...+. .++..+...+...|++++|.+.+++..+. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3334444444555555555555443321110111 12333444444555555555555544321 111 1 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA----LTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
..+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++...
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444555555555555555555554432111 0123444455555555555555555555543
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=1.2e-09 Score=99.98 Aligned_cols=208 Identities=12% Similarity=0.030 Sum_probs=162.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006614 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.++..+......+.+.|++++|+..|++..+....++...+..+...+...|++++|++.|++..+..+ .+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHH
Confidence 4567889999999999999999999999999876546888888899999999999999999999999775 56788999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTA-------KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTE 306 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 306 (638)
+...+...|++++|++.+++..+.. +.+. ..|..+...+...|++++|++.+++..+.. |+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence 9999999999999999999998863 2344 558888889999999999999999998863 43 456677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+...+...| ..+++++...+.. +...+.... ....+.+++|...+++..+.. |+......++.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~ 221 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 777775544 3445555554322 444444433 334567899999999998854 66555444443
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=2.2e-09 Score=106.81 Aligned_cols=235 Identities=10% Similarity=0.032 Sum_probs=164.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 421 (638)
....+...|++++|...+++..+.... .++... ....+..+...|...|
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~----------------~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPF---------------VSDDIE----------------KAEFHFKVAEAYYHMK 155 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG---------------CCCHHH----------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhh---------------CCChHH----------------HHHHHHHHHHHHHHcC
Confidence 444566778888888888877552100 011000 1235666778888889
Q ss_pred CHHHHHHHHHHHHhCC--CC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CcHHHHHHHHHHHHcc
Q 006614 422 RVEKAHLLLEEMEEKG--FP----PCPAAYCSLINGYGKAKRYEAANELFLELKEYC----GC-SSARVYAVMIKHFGKC 490 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~ 490 (638)
++++|...+++..+.. .. ....++..+...|...|++++|.+.+.+..+.. .. ....++..+..+|...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 9999988888876421 11 124467788888899999999999988877631 11 1235677888899999
Q ss_pred CCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC
Q 006614 491 GRLSDAVDLFNEMKKL----RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC----VPDINSHNIILNGLAKSGG 562 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~g~ 562 (638)
|++++|...|++..+. +.+....++..+...+.+.|++++|...+++..+... +.....+..+...+...|+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999988761 2222366788889999999999999999999887421 1123455666666777788
Q ss_pred ---hHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 563 ---PKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 563 ---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+++|+.++++.. ..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 316 ~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888887742 2232 34567888999999999999999998764
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.2e-10 Score=108.67 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=147.4
Q ss_pred hcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHH
Q 006614 137 ETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMI 202 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~ 202 (638)
..|++++|...+++.++. ..+....++..+...+...|++++|...|++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 22334567888888889999999999999888654 1 122456788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC-----C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEG-----N-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN------GLQP-TAKIY 269 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 269 (638)
..|...|++++|++.|+++.... + .+....++..+...+...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88999999999999999887651 1 1134567788888888999999999999888764 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCC
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGK-------GCAL-TVYTYTELIKGLGRAGRV------EDAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~ 335 (638)
..+...|...|++++|.+.+++..+. ...+ ....+..+.......+.. ..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88888888999999999888887753 1111 222333333333332222 2222222221111 1113
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888999999988887754
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3.3e-10 Score=107.53 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=158.0
Q ss_pred cchHHHHHHHHHhhh------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHH
Q 006614 103 VEINVKIQFFKWAGR------RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS------T-CVMGPSVLSEIVNI 169 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~ 169 (638)
++++.|+..|+.+.. ....+....+|..+..++...|++++|...++++++. + .+....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 445555555555432 1222345778999999999999999999999998764 1 12345678999999
Q ss_pred HHcCCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHH
Q 006614 170 LGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 236 (638)
+...|++++|...|.+..+. . .+....++..+...|...|++++|.+.|+++.+. ...+....++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999998764 1 1234677889999999999999999999999875 111124567889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKEN-------GLQP-TAKIYTTLVSIYFKLGE------VEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+...+...|++++|.+.++++.+. ...+ ....+..+...+...+. +..+...++..... .+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 999999999999999999998763 1122 22334444444433332 23333333222111 112355
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 303 TYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
++..+...|...|++++|..+|++.++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888899999999999999999988753
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=9.3e-08 Score=97.72 Aligned_cols=216 Identities=11% Similarity=-0.006 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhhhC-CC-CCCHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSR-KC-KPTANTY 198 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~ 198 (638)
.+-..+|...+..+.. |+++.+..+|+..+. ..|+...|...+....+.+. .+....+|+..... |. ..+...|
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 3344556666666554 778888888888877 34688888777777666553 35566677776543 43 2366777
Q ss_pred HHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 199 NSMILMLM----QEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 199 ~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
...+..+. .+|+.+.+..+|++++.. +. .+.. .|..... +.+......+..++.+.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~---------------- 149 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFEN-FELELNKITGKKIVGDT---------------- 149 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHH-HHHHHCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHH-HHHHhccccHHHHHHHH----------------
Confidence 77766543 245677788888888773 21 2221 1211111 11111111222222111
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006614 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG--R-----VEDAYGLFMNMLKEGCKPDIVLINNLINVL 346 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 346 (638)
.+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++...+ .+...|...+..+
T Consensus 150 -----~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 150 -----LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYL 223 (493)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 1123334444443332100013345555554432211 1 2345678888887643 3577787788888
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 006614 347 GRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~ 365 (638)
.+.|+.+.|..++++....
T Consensus 224 ~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC
Confidence 8888999999999988876
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=1.7e-09 Score=103.19 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 006614 233 TYSALISAFGKL-GRDISAIRLFDEMKENGLQ-PT----AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV----- 301 (638)
Q Consensus 233 ~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----- 301 (638)
+++.+...|... |++++|+..|++..+.... .+ ..+++.+...+.+.|++++|+..+++..+..+....
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344444444443 5555555555444432000 00 233445555555555555555555555543322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 006614 302 -YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD---IVLINNLINVLG--RAGRLEDALKLFNKME 363 (638)
Q Consensus 302 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 363 (638)
..|..+..++...|++++|...|++..+..+. ++ ...+..++..+. ..+++++|+..|+.+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 13444445555555555555555555442111 00 112233344443 3345666666665543
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=6.1e-09 Score=97.55 Aligned_cols=188 Identities=8% Similarity=-0.063 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CCHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANT 197 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 197 (638)
.+...+......+.+.|++++|...|+.+++.. +.+ +..+..+..++.+.|++++|+..|+++.+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666666677777777777777777776642 222 456666667777777777777777776665221 12445
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006614 198 YNSMILMLMQ--------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 198 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+..+..++.. .|++++|+..|+++.+..+. +......+ ..+...... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~--------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDAT--------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHH--------------HHHHHHHHH----HHHHH
Confidence 5566666666 67777777777776665532 11111111 000000000 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCAL--TVYTYTELIKGLGRA----------GRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~ 331 (638)
..+...|.+.|++++|+..|+++.+..+.. ....+..+..+|... |++++|...|+++++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 455666777777777777777776653321 234555556666544 66777777777776653
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=1e-08 Score=84.52 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...+...|++++|..+|+++.+..+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444444444444444443332 233334444444444444444444444443322 1233334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.|++++|.+.++++.+.... +...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444433221 23334444444444444444444444443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=7.8e-09 Score=96.83 Aligned_cols=122 Identities=12% Similarity=0.040 Sum_probs=89.4
Q ss_pred cccchHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHc---
Q 006614 101 IDVEINVKIQFFKWAGRRRNFEHN---STTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGK--- 172 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~--- 172 (638)
..++++.|+..|+.+.... +.+ ..++..+..++.+.|++++|...++..++... +..+.++..+..++.+
T Consensus 27 ~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~ 104 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP 104 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence 3678999999999887654 333 78999999999999999999999999988532 1235678888889988
Q ss_pred -----CCCHHHHHHHHHHhhhCCCCCCHHHH-----------------HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 173 -----AKMVNKALSIFYQIKSRKCKPTANTY-----------------NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 173 -----~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|++++|+..|+++.+..+. +.... ..+...|.+.|++++|+..|+++.+..
T Consensus 105 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 105 PYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999887432 33333 233445555555555555555555443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=1.1e-08 Score=84.26 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|...|+++....+ .+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHH
Confidence 33444444455555555555555444321 2444455555555555555555555555555443 34445555555555
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 5555555555555555432 224445555555566666666666666555543
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=9e-09 Score=98.10 Aligned_cols=203 Identities=9% Similarity=0.005 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-CC----H
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS----TCVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-PT----A 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~ 195 (638)
..|.....+|...|++++|...+.+.+.. +-++ ...+++.+..+|.+.|++++|+..|++..+.... .+ .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666777666666665442 1111 1345666666666666666666666665543110 01 3
Q ss_pred HHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----
Q 006614 196 NTYNSMILMLMQE-GYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA---- 266 (638)
Q Consensus 196 ~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~---- 266 (638)
.+++.+..+|... |++++|++.|++..+..+...+ ..++..+...+.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3566666666664 6666666666666553321011 234556666666666666666666666654322111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006614 267 --KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-T---VYTYTELIKGLG--RAGRVEDAYGLFMNML 328 (638)
Q Consensus 267 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~~~ 328 (638)
..|..+..++...|++++|...+++..+..+.. + ...+..++..+. ..+++++|+..|+.+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 134555666666666666666666665532210 0 112233334443 3345666666655543
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.04 E-value=5.5e-07 Score=92.04 Aligned_cols=201 Identities=11% Similarity=-0.013 Sum_probs=133.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006614 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..++++.... ++.+...|...+..+.+.|+.++|..++++.... |.+...+...... .+.+ +. ++.+.+.
T Consensus 199 ~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~---~~---~~~l~~~ 268 (493)
T 2uy1_A 199 HFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEE---AV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCT---HH---HHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchh---HH---HHHHHHH
Confidence 4556666553 2445777888888888889999999999998887 4444333322211 1111 11 2222221
Q ss_pred C------------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 006614 472 C------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV-RAGMIDDAYSLLRRM 538 (638)
Q Consensus 472 ~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 538 (638)
- ......+|...+....+.++.+.|..+|++. +.. ..+...|......-. ..++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 0112345667777777788899999999999 321 123344432222212 234799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+.. +-+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++..
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9863 2245566677888889999999999999983 2577888888877888999999998888774
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.03 E-value=6e-08 Score=90.46 Aligned_cols=178 Identities=11% Similarity=0.059 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
|+..+++..+.+ +++..++..+..++...|++++|++++.+....+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444433 33344444555555555555555555555544322 1344455555555555555555555555555
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--HcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 505 KLRCKP-----DVYTYNALMSGMV--RAG--MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 505 ~~~~~p-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+. .| +..+...+..+++ ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 2333344443422 222 555566666665443 23322223333355555666666666554432
Q ss_pred C-----CC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 576 S-----EI----KPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 576 ~-----~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
. +. .-|+.++..+|......|+ +|.++++++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 1133444344444444554 55555555554
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.3e-08 Score=91.41 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=69.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+..+|.+.|++++|+..|++..+..+ .+...+..+...+...|++++|+..|++..+.. +.+..++..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 66666666777777777766666554 456666666666666666666666666666642 224556666666655443
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 281 E--VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 281 ~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+ .+.+...++.... +.|....+.....++...|++++|...|++.++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 2333444443321 1222222333344455566666666666666653
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=1.5e-08 Score=90.97 Aligned_cols=176 Identities=8% Similarity=-0.010 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHcCCCHHHHHHHHHHhh
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSE----------------IVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
+...+......+...|++++|...|+..++.. +.++..+.. +..++.+.|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455666777889999999999999988742 334556666 8899999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHCCCCCC
Q 006614 188 SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR--DISAIRLFDEMKENGLQPT 265 (638)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~~~ 265 (638)
+..+. +...+..+..++...|++++|+..|++..+..+ .+...+..+...+...|+ ...+...++.... ..|.
T Consensus 82 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 82 QKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 87543 788999999999999999999999999999876 678888888888866654 3445555655542 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
...+.....++...|++++|...|++..+. .|+......+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 334455566677789999999999999876 4565444433
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1e-07 Score=88.83 Aligned_cols=181 Identities=14% Similarity=0.064 Sum_probs=107.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 179 ALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..++..-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 3455555666677777777777777777766654311355666677777777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006614 259 ENGLQP-----TAKIYTTLVSIYF--KLG--EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 259 ~~g~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
+. .| +..+...|+.++. ..| ++.+|..+|+++.+.. |+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 34 2444444554422 223 6777777777776542 3322333334467777777777777775554
Q ss_pred cC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006614 330 EG---------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 330 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
.- -+-|..+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 21 02245555455555555565 6677777776643
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=4e-09 Score=113.12 Aligned_cols=171 Identities=11% Similarity=-0.046 Sum_probs=90.5
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 136 DETRMIGVMWKSIQDMV--------RSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
...|++++|.+.+++.+ +. .+.+...+..+..++.+.|++++|+..|++..+.... +...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666655 21 1334455555555566666666666666655554222 45555555566666
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|++++|++.|++..+..+ .+...+..+...+.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666555543 344555555555555566555 55555555432 2244555555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006614 288 LVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
.|++..+.++. +...+..+..++..
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHc
Confidence 55555544322 23344444444433
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=5.7e-09 Score=111.88 Aligned_cols=174 Identities=10% Similarity=-0.081 Sum_probs=135.7
Q ss_pred HcCCCHHHHHHHHHHhh--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 171 GKAKMVNKALSIFYQIK--------SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|++.|+++.+..+ .+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence 67888999999998887 432 33677888888888999999999999999888765 57788888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..|++++|++.|++..+.. +.+...|..+...+.+.|++++ ++.|++..+.++. +...|..+...+.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999998888763 2367778888888888899888 8888888877654 67788888888889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 323 LFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
.|++..+..+. +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 88888775432 45667677777665554
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=4.3e-07 Score=85.67 Aligned_cols=218 Identities=8% Similarity=0.035 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 006614 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG--RDISAIRLFDEMKENGLQPTAKIYTTLVSIY----FKL---GEV 282 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 282 (638)
++|++.++.++..++ .+...|+.-...+...| +++++++.++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345555555544443 33344444444444444 4555555555544432 12333343333322 223 455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------HHH
Q 006614 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE--DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR------LED 354 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 354 (638)
++++++++++.+..+. +..+|+.-.-.+.+.|.++ +++..++++++..+. |...|+.-...+.+.+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 5666666665555443 5555555544555555555 666666666665444 55555554444444444 566
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006614 355 ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 432 (638)
+++.++.+...... |...|+.+-..+.+.+...+.+..+...+...+ -+.+...+..+.+.+.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66666666554422 445555555444444544443333444333221 134566677777777777777777777777
Q ss_pred HHh
Q 006614 433 MEE 435 (638)
Q Consensus 433 ~~~ 435 (638)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=5.6e-07 Score=84.92 Aligned_cols=217 Identities=9% Similarity=0.064 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----Hhc---CCHh
Q 006614 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK--MVNKALSIFYQIKSRKCKPTANTYNSMILML----MQE---GYYE 212 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~~ 212 (638)
++|+++...++..+ +-...+|+.-...+...| ++++++..++.+....++ +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 56777777766642 444556666666666666 777777777777766444 556666655555 444 6777
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE------VEK 284 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~ 284 (638)
+++++++++.+..+ .+-.+|+.-.-.+.+.|+++ ++++.++++.+.. +-|...|+.-...+.+.++ +++
T Consensus 128 ~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 77788887777665 56666666666666677776 7777777777764 2366677766666666665 777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006614 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 361 (638)
+++.++.+....+. |...|+-+...+.+.|+..+ +..+.+++.+.+ -..+...+..++..|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888877777655 77777777777777776444 444555555432 123667777788888888888888888888
Q ss_pred HHH
Q 006614 362 MEA 364 (638)
Q Consensus 362 ~~~ 364 (638)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=7.2e-08 Score=87.80 Aligned_cols=204 Identities=8% Similarity=-0.079 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-H-HHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-M-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-A-NTYNS 200 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~~ 200 (638)
...+..+...+.+.|++++|+..|+.+++.... + ....+..+..++.+.|++++|+..|+++.+..+... . .++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566666666666666666666653211 1 124555566666666666666666666655422211 1 13333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 279 (638)
+..++.+.|.. .+ ..|..+...+...|+.++|+..|+++.+.. |+ ...+.......
T Consensus 84 ~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH---
Confidence 44444332100 00 001111112223455555555555555431 22 11111110000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHH
Q 006614 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 357 (638)
.+...+ ......+...+.+.|++++|...|+++++..+... ...+..+..+|.+.|+.++|.+
T Consensus 141 -------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 141 -------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 000000 00112344556666777777777777666532211 1345666667777777777777
Q ss_pred HHHHHHHCC
Q 006614 358 LFNKMEALQ 366 (638)
Q Consensus 358 ~~~~~~~~~ 366 (638)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 777666544
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2e-08 Score=95.38 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH-HHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY-SALISA 240 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~ 240 (638)
.+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|...++++.... |+.... ......
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~~ 194 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHHH
Confidence 3344444444444444444444444443221 34444444444444445555444444444332 222111 111122
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006614 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 319 (638)
+...++.++|...+++..+.. +.+...+..+...+...|++++|++.+.++.+..+.. +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 333344444444444444432 2234444444455555555555555555444433221 13344444555555555555
Q ss_pred HHHHHHH
Q 006614 320 AYGLFMN 326 (638)
Q Consensus 320 A~~~~~~ 326 (638)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=9.7e-08 Score=86.95 Aligned_cols=194 Identities=10% Similarity=-0.045 Sum_probs=117.6
Q ss_pred cccchHHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCH
Q 006614 101 IDVEINVKIQFFKWAGRRR-NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMV 176 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~ 176 (638)
..++.+.|+..|..+.... ..+....++..+..++.+.|++++|+..++.+++.. +.++ ..+..+..++.+.|..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhh
Confidence 3578899999999887653 223335788899999999999999999999998853 2222 2455555555443311
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 006614 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
....|..+...+...|++++|+..|+++.+..+. +...+...... ..+...
T Consensus 95 -----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 95 -----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN--SQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTTCTT--CTTHHHHHHHH----------HHHHHH
T ss_pred -----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC--ChhHHHHHHHH----------HHHHHH
Confidence 1112333444556678889999999999887642 22222211110 000111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006614 257 MKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 257 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+ ......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|...++.+...++
T Consensus 146 ~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 L--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp H--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred H--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1 01123456677788888888888888777643211 24566777888888888888888887777643
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.6e-07 Score=84.54 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=105.5
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHH
Q 006614 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRL 253 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 253 (638)
+|.+.|.+..+.| ++.++..+...|...+++++|++.|++..+.+ +...+..+...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3455555555542 56666666666666666666666666666543 34455555555555 4 66666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006614 254 FDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCA-LTVYTYTELIKGLGR----AGRVEDAYGLF 324 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 324 (638)
|++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66666644 55566666666655 66677777777766665431 014556666666666 66677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 006614 325 MNMLKEGCKPDIVLINNLINVLGRA-G-----RLEDALKLFNKMEALQ 366 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 366 (638)
++..+.+ .+...+..|...|... | +.++|..+|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7776651 2333555566655432 2 6777777777766544
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.2e-07 Score=85.44 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccC----CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 442 PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG----RLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
+.++..+...|...+++++|.+.|++..+.+ +...+..+...|.. + ++++|...|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444444444444444444432 23333444444444 3 4555555555544432 3334444
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 518 LMSGMVR----AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTI 588 (638)
Q Consensus 518 l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 588 (638)
|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|..+|++..+. ..+...+..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444443 44555555555555544311 014444455555554 45555555555555543 1223344444
Q ss_pred HHHHHcc-C-----CHHHHHHHHHHHHhCC
Q 006614 589 LGCLSRA-G-----MFEEAARLMKDMNAKG 612 (638)
Q Consensus 589 ~~~~~~~-g-----~~~~A~~~~~~m~~~~ 612 (638)
...|... | ++++|..++++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444332 2 5566666666555554
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=4.6e-09 Score=88.75 Aligned_cols=83 Identities=11% Similarity=-0.023 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+...|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++|+..|++..+..+ .+...+..+...+.+
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNP--TQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Confidence 33444444444444444444444333211 344444444444444444444444444444332 233344444444444
Q ss_pred cCChHH
Q 006614 244 LGRDIS 249 (638)
Q Consensus 244 ~g~~~~ 249 (638)
.|++++
T Consensus 112 ~~~~~~ 117 (150)
T 4ga2_A 112 NDVTDG 117 (150)
T ss_dssp HCSSSS
T ss_pred cCChHH
Confidence 444433
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=6.5e-09 Score=87.79 Aligned_cols=111 Identities=7% Similarity=-0.023 Sum_probs=51.7
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
+...|++++|+..+.+...... -+...+..+...|.+.|++++|++.|++.++..+ .+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHH
Confidence 3344455555555555444311 1223334445555555555555555555555443 344445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
|+..|++..+.. +-+..++..+...|.+.|++++
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 555555544432 1134444444444444444443
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=1.6e-08 Score=88.08 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-F 241 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 241 (638)
+......+.+.|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|+++.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 33444555566666666666666554422 255566666666666666666666666655543 222222111111 1
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 320 (638)
...+...+|+..+++..+.. +.+...+..+...+...|++++|...++++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11122233555666655532 2245566666666666666666666666666554432 244555666666666666666
Q ss_pred HHHHHHHH
Q 006614 321 YGLFMNML 328 (638)
Q Consensus 321 ~~~~~~~~ 328 (638)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=1.9e-08 Score=87.68 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-H
Q 006614 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-L 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 205 (638)
.+......+.+.|++++|...++..++.. +.++..+..+..++.+.|++++|+..|+++.+..+ +...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 45667778888999999999998877643 55678888899999999999999999998877633 55444333322 2
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
...+...+|+..|++..+..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344457888998888765 568888889999999999999999999988864322 35678888999999999999
Q ss_pred HHHHHHHHHh
Q 006614 285 ALGLVQEMKG 294 (638)
Q Consensus 285 A~~~~~~m~~ 294 (638)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887653
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=6.3e-08 Score=101.98 Aligned_cols=156 Identities=8% Similarity=-0.064 Sum_probs=111.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|.+.+++.++.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888877642 456778888888888888999999988888877433 678888888888888999999998
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006614 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---GEVEKALGLVQEMKG 294 (638)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 294 (638)
|++..+..+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888888765 567788888888888888888888888888753 33577788888888888 888888888888887
Q ss_pred CCCC
Q 006614 295 KGCA 298 (638)
Q Consensus 295 ~~~~ 298 (638)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 7544
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=5.7e-08 Score=92.14 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=140.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHH-
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS- 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 200 (638)
+.+...+..+...+.+.|++++|...+++.++.. +.++..+..+...+.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4566788899999999999999999999998863 567889999999999999999999999999876 345443333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~ 279 (638)
....+.+.++.++|++.|++.....+ .+...+..+...+...|++++|++.|+++.+.... .+...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33447788889999999999999876 68889999999999999999999999999986421 1267899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006614 280 GEVEKALGLVQEMK 293 (638)
Q Consensus 280 g~~~~A~~~~~~m~ 293 (638)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998887754
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=6.1e-08 Score=102.05 Aligned_cols=153 Identities=10% Similarity=-0.034 Sum_probs=119.0
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++.+.|+..|+.+.... +.+...|..+..++.+.|++++|.+.+++.++.. +.+...+..+...+.+.|++++|...
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45678888888776544 5578899999999999999999999999998853 55688899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHH
Q 006614 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRDISAIRLFDEMKE 259 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 259 (638)
|++..+... .+...+..+...|.+.|++++|.+.|++..+..+ .+...+..+...+... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988743 3788899999999999999999999999998775 5778888999999999 999999999999988
Q ss_pred CC
Q 006614 260 NG 261 (638)
Q Consensus 260 ~g 261 (638)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=8.9e-07 Score=84.28 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=112.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDEMKENGLQ-PT----AKIYTT 271 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ 271 (638)
.+..+...|++++|.+.+++..+.....|+.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776543323321 2334666666777888888888888763221 22 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 006614 272 LVSIYFKLGEVEKALGLVQEMKGK-----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 340 (638)
+...|...|++++|+..++++.+. +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887731 1111 2346777888888999999998888887753 22222 56788
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHH
Q 006614 341 NLINVLGRAG-RLEDALKLFNKMEA 364 (638)
Q Consensus 341 ~li~~~~~~g-~~~~A~~~~~~~~~ 364 (638)
.+..+|.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888898898 46889888887754
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=5.8e-06 Score=78.75 Aligned_cols=223 Identities=13% Similarity=0.050 Sum_probs=132.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-C-CHh
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE-G-YYE 212 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 212 (638)
.+.+..++|+++++.++..+ +-+..+|+.--..+...| .+++++.+++.+....++ +..+|+.....+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 33344456666666666642 344455666555555566 477777777777666444 666666666666555 5 667
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--------SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE--- 281 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 281 (638)
+++++++++.+..+ .|...|+.-.-.+.+.|+++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 77777777776554 45555555444444444444 6777777776653 2366667766666666665
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----C
Q 006614 282 ----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV--------------------EDAYGLFMNMLKEG-----C 332 (638)
Q Consensus 282 ----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~ 332 (638)
++++++.++++....+. |...|+-+-..+.+.|+. .+......++...+ .
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 56777777777666554 666666555555544432 22223333332221 1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+.......+++.|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34677778888888888888888888888754
No 117
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=7e-06 Score=78.22 Aligned_cols=138 Identities=11% Similarity=0.029 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-C-ChHH
Q 006614 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL-G-RDIS 249 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 249 (638)
.+..++|+.+++++....+. +..+|+.-...+...| .++++++.++.++..++ .+..+|+.-...+.+. + +.++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCChHH
Confidence 33445666666666655433 5555666555555555 36666666666666554 4455555444444444 4 5555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE--------KALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
++++++.+.+.. +-|..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 556555555542 224445544443333333333 444444444444333 4444444444333333
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.74 E-value=7.5e-07 Score=80.14 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+...+...|++++|...|++.. .|+...|..+...+.+.|++++|++.|++.....+ .+...+..+...+..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHH
Confidence 344455556666666666666553 33556666666666666666666666666665543 455566666666666
Q ss_pred cCChHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006614 244 LGRDISAIRLFDEMKENGLQ--------------P-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
.|++++|++.|++..+.... | ....+..+...+.+.|++++|.+.+++..+..+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 66666666666666653210 1 125666777777777777777777777776543
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=2.8e-07 Score=88.38 Aligned_cols=200 Identities=11% Similarity=-0.000 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|.+++++..+... .+ .+...+++++|...|.+. ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4556666666666544211 00 011135666666665554 3345566777777777
Q ss_pred HHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006614 218 YNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGL 288 (638)
Q Consensus 218 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 288 (638)
|.+.........+ ..+|+.+...|...|++++|+..+++..+. |-.. -..+++.+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7666543211011 345666667777777777777777765532 1110 13456666777766 777777777
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 006614 289 VQEMKGKGCAL-----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 289 ~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
+++..+..... ...++..+...+.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77665431110 1345666777777788888888777777653 11111 22455566666677888888888
Q ss_pred HHHHH
Q 006614 359 FNKME 363 (638)
Q Consensus 359 ~~~~~ 363 (638)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87776
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.4e-06 Score=81.31 Aligned_cols=127 Identities=11% Similarity=0.028 Sum_probs=58.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCC-HHHHH
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLRCK-PD----VYTYNALMSGMVRAGMIDDAYSLLRRMEE----D-GCVPD-INSHN 551 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~ 551 (638)
+...+...|++++|+..|++..+.... ++ ..+++.+...|...|++++|...|+++.+ . +..+. ..++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333344444445555544444432111 11 12345555555555555555555555542 1 11111 22445
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhh----CCCCCC-HHHHHHHHHHHHccCC-HHHHHHHHHHHH
Q 006614 552 IILNGLAKSGGPKRAMEIFTKMQH----SEIKPD-AVSYNTILGCLSRAGM-FEEAARLMKDMN 609 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~m~ 609 (638)
.+...|.+.|++++|..++++..+ .+..+. ..+|..+..++.+.|+ +++|.+.+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555555555555555555442 111111 3455555556666663 456655555544
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=9.8e-08 Score=90.15 Aligned_cols=100 Identities=6% Similarity=-0.116 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...++..++.. +.+...+..+..++.+.|++++|...|++..+..+ .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 44566666677777777777777777766642 33566666666677777777777777777666532 25666666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|+..|++..+..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777776665543
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=3.3e-07 Score=87.88 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=104.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CC--HHHHHHHH
Q 006614 168 NILGKAKMVNKALSIFYQIKSR----KCK-PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF--PD--TVTYSALI 238 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~~~~~l~ 238 (638)
..|...|++++|...|.+..+. +.. .-..+|+.+...|.+.|++++|+..|++........ +. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666665555554332 100 013356666666666777777777666654331100 11 24566666
Q ss_pred HHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 006614 239 SAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCALT-VYTYTELI 308 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li 308 (638)
..|.. |++++|+..+++..+. |-.. ...+++.+...|.+.|++++|++.+++..+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 7777777777766542 1000 1356677777777777777777777776643 11111 22555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHHHHHHH
Q 006614 309 KGLGRAGRVEDAYGLFMNMLKEGCKP-D---IVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~li~~~~~~g~~~~A~~~ 358 (638)
..+...|++++|...|++.. ..+.. + ......++..+ ..|+.+.+.++
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66677788888888887776 32211 1 12344455544 56676666553
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=9.5e-07 Score=79.45 Aligned_cols=131 Identities=10% Similarity=-0.066 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+..+...+...|++++|...+++.+ .+++.++..+...+.+.|++++|...|++..+.. +.+...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 346677788889999999999998763 5688899999999999999999999999998764 34788899999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFP--------------DTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
...|++++|++.|++..+..+..+ ....+..+...+.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999988654211 23778889999999999999999999998864
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=2.3e-06 Score=81.33 Aligned_cols=166 Identities=10% Similarity=0.033 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC---CCC--
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKC---KPT-- 194 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 194 (638)
..+...+..+...|++++|.+.+.+.++.... .. ..+..+...+...|++++|+..|.+..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555666777777777777777776664221 11 1233344555666677777777666654311 111
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCC-
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMC---NEGNCFP--DTVTYSALISAFGKLGRDISAIRLFDEMKENG----LQP- 264 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~- 264 (638)
..+|+.+...|...|++++|+..|+++. +..+..+ ...++..+...|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3456666666666777777777666665 2111001 11355556666666666666666666554321 000
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKA-LGLVQEM 292 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m 292 (638)
-..+|..+...|.+.|++++| ...+++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 134455555555555555555 4444443
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.68 E-value=6.1e-07 Score=72.81 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+......|.+.|++++|++.|++.++..+ .+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344445555555555555555555555443 344455555555555555555555555554432 22344455555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006614 277 FKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~ 295 (638)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555555555555555544
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=6.4e-07 Score=76.80 Aligned_cols=128 Identities=9% Similarity=-0.118 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..++.. +.+..++..+...+...|++++|...|.+..+... .+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 455666666666777777777666666542 33556666666666666666666666666655432 2555666666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTY--SALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
...|++++|.+.|+++....+ .+...+ ...+..+...|++++|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 233333 22223344555555555555543
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=7.7e-07 Score=72.21 Aligned_cols=98 Identities=11% Similarity=-0.009 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|......+.+.|++++|++.|++.++.. +.++.++..+..++.+.|++++|+..|++..+..+. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 344455555556666666666665555532 344555555555555555555555555555554322 455555555555
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006614 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
...|++++|++.|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 55555555555555555544
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.2e-06 Score=75.01 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555555443 344455555555555555555555555555432 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTE--LIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 327 (638)
...|++++|.+.+++..+..+. +...+.. .+..+...|++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555544322 2223322 222244445555555555443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=4.1e-06 Score=79.64 Aligned_cols=169 Identities=14% Similarity=0.059 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--H
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKENGL---QPT--A 266 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~ 266 (638)
..+...+..+...|++++|.+.+++..+.....++. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344455666777778888877777776654321111 2233455556677788888888877764321 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 006614 267 KIYTTLVSIYFKLGEVEKALGLVQEMKG---KGCA-L--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----CKP-D 335 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~ 335 (638)
.+|+.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4777788888888888888888887762 2111 1 12577778888888888888888888876531 111 1
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDA-LKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 364 (638)
..++..+..+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56778888888888988888 666776543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2.2e-07 Score=87.77 Aligned_cols=193 Identities=11% Similarity=-0.017 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|.+..+..+ .+...|..+...|.+.|++++|+..+++..+..+ .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 456777888888899999999999998887643 2788888899999999999999999999888765 5778888888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006614 239 SAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
.++...|++++|...|++..+.. |+ ...+...+....+. .++.. +..........+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 89999999999999998877642 21 11111122211111 11111 1122222333344443333222 26788
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 006614 318 EDAYGLFMNMLKEGCKPD-IVLINNLINVLGRA-GRLEDALKLFNKMEA 364 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~~~~ 364 (638)
++|.+.++...+. .|+ ......+...+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888777765 333 33334444444444 567778888877654
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=2e-06 Score=69.30 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3344444444444444444444444444332 233444444444444444444444444444331 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006614 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 44444444444444444433
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=2e-06 Score=69.29 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|.+.++++++.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666655532 3345555555555666666666666665555442 2245555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCC
Q 006614 205 LMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...|++++|...|+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 556666666666665555544
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=1.3e-06 Score=71.52 Aligned_cols=117 Identities=9% Similarity=-0.061 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+...|..+...+.+.|++++|...++..++.. +.+..++..+...+...|++++|...|++..+... .+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 345666777777777777777777777766542 33556666666666666777777777666665432 2556666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+.+.|++++|.+.|++..+..+ .+...+..+...+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDS--SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCG--GGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHH
Confidence 666666666666666666665543 233444444444433
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=4.9e-07 Score=80.56 Aligned_cols=155 Identities=8% Similarity=-0.000 Sum_probs=67.3
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHccCCh
Q 006614 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG----NCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..|++++|.+.++.+... .......+..+...+...|++++|...|++..... ........+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11244455555555566666666666665554411 0001223444455555555555
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 006614 248 ISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCA-LTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 248 ~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 316 (638)
++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.... +.. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555544332 1011 1223444555555555555555555544321 100 001223344444555555
Q ss_pred HHHHHHHHHHH
Q 006614 317 VEDAYGLFMNM 327 (638)
Q Consensus 317 ~~~A~~~~~~~ 327 (638)
+++|...+++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=1.4e-06 Score=72.95 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+..+...+.+.|++++|+..|+++.+..+. +...|..+..+|...|++++|++.|++.....+ .+...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHH
Confidence 3444444455555555555555555444222 444455555555555555555555555554443 2334444445555
Q ss_pred HccCChHHHHHHHHHHHH
Q 006614 242 GKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~ 259 (638)
...|++++|+..|++..+
T Consensus 115 ~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555444
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=4.5e-06 Score=76.77 Aligned_cols=127 Identities=11% Similarity=-0.018 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYF 277 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~ 277 (638)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34445555555555555555554433 222234444445555555555555555333321 010 123444555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 278 KLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
..|++++|++.|++.......|. .........++.+.|+.++|...|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555555555555543221122 223334444455555555555555555554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=1.6e-06 Score=70.95 Aligned_cols=97 Identities=20% Similarity=0.137 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...+..+...+.+.|++++|++.|++..+..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 33344444444444444444444444444332 233344444444444444444444444444321 123334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 006614 275 IYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~ 294 (638)
.+.+.|++++|.+.+++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444433
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=2e-06 Score=69.98 Aligned_cols=118 Identities=10% Similarity=-0.075 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++..+... +.+...+..+...+...|++++|...+.+..+... .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3455556666666666666666666655532 33455555555666666666666666665554422 245555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
+...|++++|...|++..+..+ .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhc
Confidence 6666666666666665555443 344444444444444443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=2.3e-06 Score=69.60 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|.+.|++.....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444444445555555555554444332 234444444444444444444444444444331 12334444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
...|++++|.+.+++..+..+. +...+..+...+.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 4444444444444444443221 3333444444443333
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.9e-06 Score=79.24 Aligned_cols=190 Identities=8% Similarity=-0.055 Sum_probs=144.8
Q ss_pred ccchHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhC------------CCC-----
Q 006614 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMAL-------IRCLDETRMIGVMWKSIQDMVRS------------TCV----- 157 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~~----- 157 (638)
..+...|.+.|..+.... +-....|+.+ ..++.+.++..+++..++.-++. |..
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467788999999887765 5567899888 57777777777777766665541 110
Q ss_pred ---CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HH
Q 006614 158 ---MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TV 232 (638)
Q Consensus 158 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 232 (638)
.-......+...+...|++++|.++|..+...+ |+......+...+.+.|++++|+..|+....... |. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d--~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD--KFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC--HHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC--cccHHH
Confidence 002345567788899999999999999998764 3333667777889999999999999986655321 21 34
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 678889999999999999999999986543253 44677788899999999999999999998754
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=8.1e-07 Score=74.44 Aligned_cols=102 Identities=6% Similarity=-0.096 Sum_probs=91.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006614 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+...|..+...+.+.|++++|...|+..+... +.++..|..+..++.+.|++++|+..|++..+..+. ++..|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 356788899999999999999999999999864 667899999999999999999999999999987544 788899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+|.+.|++++|+..|++..+..+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999998763
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=1.6e-06 Score=72.60 Aligned_cols=100 Identities=6% Similarity=-0.154 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 45566667777777777777777777776643 446667777777777777777777777777665332 5666677777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7777777777777777776654
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.4e-06 Score=77.55 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=116.7
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKL 279 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~ 279 (638)
+...|++++|.+.++.+... +. .....+..+...+...|++++|...+++..+. |..+ ...++..+...+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCC-hH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 35689999999966665442 21 46678899999999999999999999988762 2122 356788899999999
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHc
Q 006614 280 GEVEKALGLVQEMKGK----GCAL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC-KPD----IVLINNLINVLGR 348 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~ 348 (638)
|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+... ..+ ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999887653 2111 245677888899999999999999998875311 112 2346778889999
Q ss_pred cCCHHHHHHHHHHHHH
Q 006614 349 AGRLEDALKLFNKMEA 364 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~ 364 (638)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988765
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.49 E-value=2.8e-06 Score=82.37 Aligned_cols=124 Identities=6% Similarity=-0.071 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG--------------PSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+...|..+...+.+.|++++|...|++.++...... ..++..+..++.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777777788888888888877776431111 244455555555555555555555555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
.+ .+...|..+..+|...|++++|+..|+++.+..+ .+...+..+...+.+.|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 22 1444455555555555555555555555544433 3344444444444444444444
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.47 E-value=3.1e-06 Score=82.10 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--------------ANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555566666666666666666666655432211 3555666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 227 p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 S--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 455555556666666666666666666555542 22444555555555555555555
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=1.3e-06 Score=75.94 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=48.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhcCCH--hHH
Q 006614 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-LMQEGYY--EKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 214 (638)
.|++++|...++..++.. +.+...+..+...+...|++++|...|++..+.... +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 334444444444443321 233344444444444444444444444444433211 33344444444 3344444 444
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+..|+++....+ .+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444332 2334444444444444444444444444444
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=9.9e-05 Score=69.96 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-hHHHHH
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY--YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-DISAIR 252 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 252 (638)
+++++.+++.+....++ +..+|+.-...+.+.|+ ++++++.++++.+..+ .|...|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45666666666665433 66666666666666663 6677777777776654 566666655555556666 466777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 006614 253 LFDEMKENGLQPTAKIYTTLVSIYFKL--------------GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA---- 314 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 314 (638)
.++.+.+.. +-|...|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 777766653 23566666555554443 3466677777776665544 555555433333333
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHH
Q 006614 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLIN---VLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~~~~ 364 (638)
+.++++++.++++.+..+. +...+..++. .....|..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3466777777777765432 2222222221 11234556666667766665
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=2.6e-06 Score=73.98 Aligned_cols=119 Identities=11% Similarity=0.092 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 006614 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG-LGRAGRV--EDA 320 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~A 320 (638)
.|++++|...+++..+.. +.+...|..+...|...|++++|...+++..+..+. +...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 224455555555555555555555555555544322 44455555555 4555555 666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006614 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
...+++..+..+. +...+..+...|...|++++|...++.+.+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666554332 4555555666666666666666666666553
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.44 E-value=1.1e-06 Score=73.75 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...+..+...+.+.|++++|+..|+++....+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444445555555555555555555554443 344445555555555555555555555554432 123444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 006614 275 IYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~ 294 (638)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.4e-06 Score=67.74 Aligned_cols=97 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|......+.+.|++++|...|++.++.. +.++..+..+..++.+.|++++|+..|++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345555556666666666666666655532 334555555566666666666666666655554322 455555555566
Q ss_pred HhcCCHhHHHHHHHHHHhC
Q 006614 206 MQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~ 224 (638)
...|++++|++.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666555543
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=3.9e-07 Score=81.04 Aligned_cols=99 Identities=12% Similarity=-0.022 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...+..+...+.+.|++++|++.|++.....+..++ ...+..+...+...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344556666667777777777777777664432121 133344444444444444444444444433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
. +.+...+..+..+|...|++++|.+.|++..+
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 12333444444444444444444444444443
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.40 E-value=4.2e-06 Score=71.59 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45678888888899999999999998888753 557788888888888999999999999888877433 6888888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+|...|++++|++.|++..+..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 889999999999999888876653
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.4e-05 Score=63.41 Aligned_cols=97 Identities=18% Similarity=0.056 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444445555555555555555555554433 344444555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006614 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555444
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.3e-05 Score=63.73 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..+... +.++..+..+...+...|++++|...+++..+..+ .+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 455555666666666666666666655532 33455555555566666666666666665555422 2455555555566
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006614 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
...|++++|.+.|++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666655544
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=6.5e-06 Score=66.69 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.|..+...+.+.|++++|++.|++..+..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444555555555555555544433 344444444444555555555555555444432 12344444444555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 006614 277 FKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~ 294 (638)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555544443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=3.3e-06 Score=70.20 Aligned_cols=100 Identities=8% Similarity=-0.118 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455666677777777777777777776643 456667777777777777777777777777665432 5666667777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777776654
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=0.00041 Score=65.72 Aligned_cols=219 Identities=6% Similarity=-0.010 Sum_probs=165.0
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRM----------IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.+.|+.++..+.... |.+..+|+.--.++...+. ++++...++.++... +-+..+|+.-...+.+.|
T Consensus 46 s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 457888888776554 5567788877666655544 678888898888753 667788888777777777
Q ss_pred --CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-------
Q 006614 175 --MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL------- 244 (638)
Q Consensus 175 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 244 (638)
.+++++.+++++.+..+. |..+|+.-.-++...|. ++++++.++++.+.++ .|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSCCC---
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhhccccc
Confidence 489999999999988654 88899988888888888 6999999999999876 6888887766666554
Q ss_pred -------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006614 245 -------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL-----------GEVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 245 -------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
+.++++++.+....... +-|...|+.+-..+.+. +.++++++.++++.+..+. +...+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~ 277 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLT 277 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHH
Confidence 45789999999988764 44788888776666665 4588999999999987543 4444333
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcC
Q 006614 307 LIK---GLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 307 li~---~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++. .....|..+++...+.++++-+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 322 2234677788888888888754
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=7.8e-06 Score=66.30 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=23.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+.+.+.+.|++++|+..|++..+..+. +...|+.+..+|.+.|++++|++.|++.+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444333211 33444444444444444444444444443
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2.2e-05 Score=65.44 Aligned_cols=102 Identities=7% Similarity=-0.138 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT 197 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 197 (638)
+.+...|..+...+...|++++|...+++.++. .|+ ...+..+...+...|++++|...|++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 346677888888888888888888888888773 444 56777777778888888888888887766532 25677
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
+..+..++...|++++|...|++.....+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77777788888888888888888777653
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=6.6e-06 Score=64.71 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--CHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP--DTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 239 (638)
.+..+...+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|++..+..+ . +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHHHHHHHHH
Confidence 344444444555555555555555444321 2444455555555555555555555555554432 2 3444555555
Q ss_pred HHHcc-CChHHHHHHHHHHHHC
Q 006614 240 AFGKL-GRDISAIRLFDEMKEN 260 (638)
Q Consensus 240 ~~~~~-g~~~~A~~~~~~m~~~ 260 (638)
.+... |++++|.+.++...+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=1.2e-05 Score=65.28 Aligned_cols=106 Identities=5% Similarity=-0.061 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CC----HHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
..++..+...+.+.|++++|+..|++.++.. +.++..|..+..+|.+.|++++|+..|++..+..+. ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4577888999999999999999999998863 567889999999999999999999999998765221 11 2467
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..+..++...|++++|++.|++.+... ||....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHH
Confidence 778888889999999999999988754 555443
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.30 E-value=1.2e-05 Score=71.26 Aligned_cols=119 Identities=10% Similarity=-0.029 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----------------SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
..|..+...+.+.|++++|...|++.++.. +.++ .++..+..++.+.|++++|+..+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456666677777777777777777776632 1121 34444445555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006614 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.. .+...+..+..+|...|++++|++.|++..+..+ .+...+..+...+...++.+
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHH
Confidence 21 2444444455555555555555555555544432 23334444444444333333
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.30 E-value=7.9e-06 Score=67.88 Aligned_cols=94 Identities=15% Similarity=-0.031 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+.+.|++++|...|++.....+ .+...|..+..+|.+.|++++|+..|++.....+ .+...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHH
Confidence 34444445555555555555555544422 2444555555555555555555555555555443 33444444555555
Q ss_pred ccCChHHHHHHHHHHHH
Q 006614 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=1.8e-05 Score=65.10 Aligned_cols=93 Identities=14% Similarity=-0.036 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+..+...+...|++++|...|.+.....+ .+...|..+...+...|++++|+..|++..+..+ .+...+..+...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHH
Confidence 333333333333333333333333333221 1333333444444444444444444444433332 2333333333334
Q ss_pred HccCChHHHHHHHHHH
Q 006614 242 GKLGRDISAIRLFDEM 257 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m 257 (638)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444433333
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.27 E-value=8.5e-06 Score=64.05 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 006614 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP--TAKIYTTL 272 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 272 (638)
...+..+...+...|++++|...|++..+..+ .+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455555666666666666666666665543 345555555555666666666666666555542 12 34455555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 006614 273 VSIYFKL-GEVEKALGLVQEMKGK 295 (638)
Q Consensus 273 i~~~~~~-g~~~~A~~~~~~m~~~ 295 (638)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555555 5555555555555544
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=5.9e-05 Score=76.13 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=131.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CcH
Q 006614 415 DGFCKTNRVEKAHLLLEEMEEKGFPPC----------------PAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SSA 477 (638)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~ 477 (638)
..+.+.|++++|++.|.++.+...... ..++..++..|.+.|++++|.+.+..+.+.... ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 446677888888888888876531111 123677888888888888888888877653111 111
Q ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--C
Q 006614 478 ----RVYAVMIKHFGKCGRLSDAVDLFNEMKK----LRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED--GC--V 544 (638)
Q Consensus 478 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~--~ 544 (638)
.+.+.+...+...|+++.|..++..... .+..+. ..++..+...|...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2334444455567888888888877643 222222 456777888888899999999988887653 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhC--CC-CC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 545 P-DINSHNIILNGLAKSGGPKRAMEIFTKMQHS--EI-KP-D--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 545 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1457778888888999999999988887641 11 12 1 24566667777888999998887776653
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=1.2e-05 Score=66.20 Aligned_cols=102 Identities=6% Similarity=-0.111 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006614 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+...|..+...+...|++++|...++..+... +.++..+..+..++...|++++|...|++..+..+. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3568899999999999999999999999988864 557889999999999999999999999999887543 78899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
..++...|++++|+..|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999988754
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=3.9e-05 Score=63.83 Aligned_cols=98 Identities=18% Similarity=0.047 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT----ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
+...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|+..+++..+..+ .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHH
Confidence 4455566666666666666666666666654 233 45555566666666666666666666655443 345555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+...+...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555666666666666666655553
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=5.3e-05 Score=76.43 Aligned_cols=167 Identities=10% Similarity=-0.034 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC-HHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPT-AKI 268 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~ 268 (638)
+..++..|.+.|++++|.+.+..+.......++. ...+.+...+...|+.++|..+++.... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667777888888888888877765432211222 1223333444456788888888776653 222222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-C--HH
Q 006614 269 YTTLVSIYFKLGEVEKALGLVQEMKGK----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---GCKP-D--IV 337 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~ 337 (638)
+..+...|...|++++|..++++.... +-.+ ....+..++..|...|++++|..++++.... ...| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888888888888888888876542 1111 2456777888888999999999888877652 1111 1 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006614 338 LINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556667777888899988887776643
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.23 E-value=1.4e-05 Score=68.23 Aligned_cols=96 Identities=17% Similarity=-0.015 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|++.++..+ .+...|..+...
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 34444444555555555555555555443221 444445555555555555555555555544433 334444444444
Q ss_pred HHccCChHHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~ 259 (638)
+...|++++|+..|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 4444555555444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=9.6e-06 Score=65.87 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|+++.
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333444444444444333321 1133333444444444444444444444433
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=1.2e-05 Score=65.32 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CC----HHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
...|..+...+...|++++|...++..+... +.++..+..+...+...|++++|...|++..+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4678889999999999999999999998863 567888999999999999999999999998776321 22 7788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
..+...+...|++++|.+.|+++.+.. |+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 889999999999999999999998865 45554444433
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.21 E-value=1.2e-05 Score=64.49 Aligned_cols=96 Identities=4% Similarity=-0.121 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 006614 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
+..+...+.+.|++++|+..++..++.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3444555556666666666666655532 335555555666666666666666666665554322 45555556666666
Q ss_pred cCCHhHHHHHHHHHHhCC
Q 006614 208 EGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~ 225 (638)
.|++++|+..|++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666655543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.18 E-value=1.3e-05 Score=64.34 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=48.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++..+..+ .+...+..+...+...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 3444455555555555555555544222 455555555555555555555555555555443 3444555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 006614 245 GRDISAIRLFDEMKE 259 (638)
Q Consensus 245 g~~~~A~~~~~~m~~ 259 (638)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.16 E-value=2.8e-06 Score=67.86 Aligned_cols=88 Identities=11% Similarity=-0.025 Sum_probs=47.4
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006614 138 TRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
.|++++|+..|++.++.+ -+.+..++..+..++.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 455566666666655532 1223445555666666666666666666666554322 4555556666666666666666
Q ss_pred HHHHHHHhCCC
Q 006614 216 ELYNEMCNEGN 226 (638)
Q Consensus 216 ~~~~~~~~~~~ 226 (638)
+.|++.....+
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 66666555443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=9e-05 Score=59.94 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 006614 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMI 202 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 202 (638)
..+...+.+.|++++|...++.+++.. +.++ ..+..+..++.+.|++++|...|+++.+..+. + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 344556666677777777776666532 2222 45556666666666666666666666554322 2 45566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC
Q 006614 203 LMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.++.+.|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666666666654
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=2.1e-05 Score=66.61 Aligned_cols=96 Identities=9% Similarity=-0.142 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-C----CH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P----TA 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~ 195 (638)
.++..+...+...|++++|...+++.++.... .+ ..++..+...+...|++++|...+++..+.... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666666667777777777776665542100 11 124444455555555555555555544322000 0 12
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
..+..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 23444444444445555444444444
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=2.2e-05 Score=79.96 Aligned_cols=119 Identities=10% Similarity=-0.098 Sum_probs=54.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006614 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
..+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|+..|++..+.... +...|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34445555555555555555431 333445555555555555555555555555544221 4445555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChHHHHHHHH
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISA--FGKLGRDISAIRLFD 255 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 255 (638)
+|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555544331 22222222222 444455555555444
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.7e-05 Score=67.24 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCK-PT----ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TV 232 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 232 (638)
++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|++++|.+.+++........++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666666777766666665443100 01 134555666666666666666666665432110011 22
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444455555555555554443
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=4.9e-05 Score=77.06 Aligned_cols=138 Identities=9% Similarity=-0.103 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|++.++....... + ..+... +... .....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHH----HHHHHHHHHHHH
Confidence 346666777777777777777777776653211110 0 000000 0000 013445555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
|.+.|++++|+..|++++...+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.++.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443 345555555555555555555555555555432 1234455555555555555554
Q ss_pred HH
Q 006614 285 AL 286 (638)
Q Consensus 285 A~ 286 (638)
+.
T Consensus 404 a~ 405 (457)
T 1kt0_A 404 RD 405 (457)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=0.0001 Score=59.55 Aligned_cols=96 Identities=7% Similarity=-0.019 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHH
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALIS 239 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~ 239 (638)
..+...+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|+..|+++.+..+..+. ...+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 33445556666666666666666554222 22 45555666666666666666666666665431111 344555566
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 006614 240 AFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=5.7e-05 Score=74.04 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+.+.|++++|...|++.++.. +.. ......+++ .+. .+.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~-------~~~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG-------AKL-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH-------GGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH-------HHH-HHHHHHHHHHHHHHH
Confidence 356677777778888888888777766510 000 000000000 001 011445566666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
.+.|++++|++.+++.++..+ .+...|..+..++...|++++|++.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666666553 455666666666666677777777666666542 22455566666666666666555
Q ss_pred HH
Q 006614 286 LG 287 (638)
Q Consensus 286 ~~ 287 (638)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=6.8e-05 Score=76.03 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....|..+...+.+.|++++|+..|++.++..+..++ ...|..+..++.+.|++++|+..+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5666777777777777777777777777765432111 578999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG-LFMNMLKE 330 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~ 330 (638)
. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+...+.+.++.+++.+ .+..|...
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4 347889999999999999999999999999987654 66788888889999999888764 56666543
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=2.3e-05 Score=79.84 Aligned_cols=122 Identities=15% Similarity=0.049 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|+..|++..+... .+..+|..+..+|.+.|++++|++.|++..+..+ .+...+..+..++...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 344566788999999999999988743 3688999999999999999999999999999875 6788899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006614 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSI--YFKLGEVEKALGLVQ 290 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 290 (638)
|++++|++.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999988753 2244556666555 888899999999988
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.4e-05 Score=63.71 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=57.8
Q ss_pred cCCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006614 172 KAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
..|++++|+..|++..+.+ .+.+...+..+...|...|++++|++.|++..+..+ .+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3567777777777777653 122456677777777777777777777777777665 456667777777777777777
Q ss_pred HHHHHHHHHHC
Q 006614 250 AIRLFDEMKEN 260 (638)
Q Consensus 250 A~~~~~~m~~~ 260 (638)
|+..+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00049 Score=71.41 Aligned_cols=173 Identities=11% Similarity=0.008 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006614 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..++|++.++++.+..++ +..+|+.-..++...|+ ++++++.++.+.+..+ .+..+|+.-.-.+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 335667777777666433 56666666666666665 7777777777777665 5666666666666677
Q ss_pred C--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 006614 245 G--RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG-EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA------- 314 (638)
Q Consensus 245 g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------- 314 (638)
| +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 7 5577777777777754 236677777777777777 777777777777776655 666666665555442
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006614 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 353 (638)
+.++++++.+++.+...+. |...|+.+-..+.+.+..+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4567888888888876554 6677777776666666533
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=0.0001 Score=60.99 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC-------CCCCCCHHHH----HHHHHHHHccCChHHHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMCNE-------GNCFPDTVTY----SALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.|+.+..++.+.|++++|+..|++.++. .+ .+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p--d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ--DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS--THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC--chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777665 43 344556 6666677777777777777766654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00011 Score=62.53 Aligned_cols=99 Identities=5% Similarity=-0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS-------TC----------VMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
...+......+.+.|++++|+..|...+.. .. +.+..++..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888888999888888887663 00 1112334444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 188 SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+..+ .+...|..+..+|...|++++|+..|++....
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4321 13444444444444444444444444444443
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=9.1e-05 Score=72.58 Aligned_cols=138 Identities=8% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+.+.|++++|++.|++.++... +.. .... .++..+. -+.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~~----------~~~~-------~~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GSR----------AAAE-------DADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHH----------HHSC-------HHHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cCc----------cccC-------hHHHHHH-HHHHHHHHHHHHHH
Confidence 4466777888888888888888888776210 000 0000 0011000 01133455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006614 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 355 (638)
|.+.|++++|++.+++..+..+. +...|..+..+|...|++++|...|++..+..+. +...+..+...+.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555554332 4555555555666666666666666665554322 444555555555555555544
Q ss_pred H
Q 006614 356 L 356 (638)
Q Consensus 356 ~ 356 (638)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.93 E-value=0.00011 Score=62.53 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSR--------K---------CKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
..+......+.+.|++++|+..|.+.... . .+.+...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666778888899999999999887664 0 011345677777777788888888888888777
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 224 EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+ .+...|..+..++...|++++|...|++..+.
T Consensus 92 ~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 664 56777777777777778888887777777764
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.90 E-value=0.0011 Score=68.78 Aligned_cols=171 Identities=10% Similarity=0.060 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--
Q 006614 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGR----------LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-- 526 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 526 (638)
++|.+.++++... .+.+..+|+.--.++...|+ +++++..++++.+.. +.+..+|+.-...+.+.|
T Consensus 46 eeal~~~~~~l~~-nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHH-CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4445555555543 22334444444444444444 667777777776653 335566666666666677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc----------
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG-GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA---------- 595 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------- 595 (638)
+++++++.++++.+.... |...|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 557777777777776433 6777777777777777 777777777777765432 566676665555542
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccCCcc
Q 006614 596 ----GMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDR 634 (638)
Q Consensus 596 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (638)
+.+++|.+.+++..... +-|...|...-..+.+.+..+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 55788888888887642 445667777777776666543
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.88 E-value=0.00015 Score=60.02 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CHH-----HHHHHHHHHHcCCCHHHHHHHHHHhhhC----
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM------GPS-----VLSEIVNILGKAKMVNKALSIFYQIKSR---- 189 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 189 (638)
...+......+.+.|++++|+..|+..++..... +.. .|+....++.+.|++++|+..|++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3466777888999999999999999998853221 232 8999999999999999999999999876
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 190 ---KCKPTANTY----NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 190 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+. +...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 433 66788 999999999999999999999997753
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=3.9e-05 Score=74.35 Aligned_cols=149 Identities=9% Similarity=-0.049 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+.+.|++++|...|+..++. .|+.. .+...|+.+++...+. ...|+.+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667777777888888888888877663 23322 1222333333332221 13677788888
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI-YFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~ 284 (638)
.+.|++++|+..|++.++..+ .+...|..+..++...|++++|+..|++..+.. +.+...+..+... ....+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887664 567788888888888888888888888877642 1244455555554 334556777
Q ss_pred HHHHHHHHHhCC
Q 006614 285 ALGLVQEMKGKG 296 (638)
Q Consensus 285 A~~~~~~m~~~~ 296 (638)
+.+.|..|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 778888877653
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.83 E-value=4.4e-05 Score=73.98 Aligned_cols=148 Identities=12% Similarity=0.003 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.+......+.+.|++++|...|.+.... .|+... +...|+.+++...+. ...|..+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666677777777777777776654 222221 122333333332211 13788899999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 006614 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG-LGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A 320 (638)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+... ....+..+++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998863 347889999999999999999999999999876543 45555555554 3455677888
Q ss_pred HHHHHHHHHcC
Q 006614 321 YGLFMNMLKEG 331 (638)
Q Consensus 321 ~~~~~~~~~~~ 331 (638)
...|..|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88999888753
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.82 E-value=0.00065 Score=55.67 Aligned_cols=82 Identities=11% Similarity=-0.051 Sum_probs=33.3
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 006614 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----A 314 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 314 (638)
..+.+++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3333444444444444432 33344444444443 344444444444444332 23333333333333 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 006614 315 GRVEDAYGLFMNMLKE 330 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~ 330 (638)
++.++|..+|++..+.
T Consensus 111 ~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 111 KNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHC
Confidence 4444444444444433
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00012 Score=74.08 Aligned_cols=125 Identities=8% Similarity=-0.010 Sum_probs=72.3
Q ss_pred HcCCCHHHHHHHHHHhhhC-----CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCCH-HHHHHH
Q 006614 171 GKAKMVNKALSIFYQIKSR-----KCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNE-----GNCFPDT-VTYSAL 237 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~l 237 (638)
..+|++++|+.++++..+. |.. ....+++.+..+|...|++++|..++++.+.. |+..|++ .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3556666666666555332 111 12345666666777777777776666665432 3333443 456667
Q ss_pred HHHHHccCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006614 238 ISAFGKLGRDISAIRLFDEMKEN-----GL-QP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
...|...|++++|..++++..+. |. .| ...+.+.+...+...+.+++|+.++..+.+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665431 21 12 2334555666666777777777777777653
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00025 Score=71.69 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNE-----GNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKEN-----G-LQP-TAKIYT 270 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~ 270 (638)
.+..+|++++|+.++++.+.. |+..|+ ..+++.|...|...|++++|..++++..+. | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999987643 333344 357899999999999999999999987642 2 123 355789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMKG-----KGCA-LT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.|...|...|++++|+.++++..+ .|.. |+ ..+.+.+..++...+.+++|..+|..+.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2432 22 344566777888999999999999999874
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.0013 Score=53.82 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=7.3
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006614 595 AGMFEEAARLMKDMNAK 611 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~ 611 (638)
.+++++|.+++++..+.
T Consensus 110 ~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 34444444444444433
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=7.2e-05 Score=58.59 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|++.|++.....
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 344444455555555555555555544322 244455555555555555555555555555543
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00025 Score=55.97 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 144 MWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
|+..++..++.. +.++..+..+...+...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 33445555555555555555555555555554422 2445555555555555555555555555544
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.55 E-value=0.0007 Score=50.44 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006614 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+..+...+.+.|++++|...|++..+... .+...+..+...+.+.|++++|+..|++....
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33333444444444444444444433321 13334444444444444444444444444443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.55 E-value=0.0002 Score=59.17 Aligned_cols=83 Identities=7% Similarity=-0.004 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006614 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY----------EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
+.+++|...+++..+..+. +...|+.+..++.+.+++ ++|+..|++.++..+ .+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHH
Confidence 3445555555555444322 555555555555554443 366666666666554 345555556666555
Q ss_pred cC-----------ChHHHHHHHHHHHH
Q 006614 244 LG-----------RDISAIRLFDEMKE 259 (638)
Q Consensus 244 ~g-----------~~~~A~~~~~~m~~ 259 (638)
.| ++++|++.|++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 43 55666666666555
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.53 E-value=0.00023 Score=54.57 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006614 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
++..+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555555444222 344555555555555555555555555443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.00069 Score=53.37 Aligned_cols=79 Identities=5% Similarity=-0.047 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006614 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+|+..|++..+..+ .+...+..+...|...|++++|+..|++.....+ .+...|..+...+...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666655532 2566666777777777777777777777766554 45566666666666677777777666666
Q ss_pred HH
Q 006614 258 KE 259 (638)
Q Consensus 258 ~~ 259 (638)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.00098 Score=49.59 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..+...+...|++++|+..|++..+..+ .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345566677777777777777777777776554 456666677777777777777777777766642 22445555555
Q ss_pred HHHHh
Q 006614 274 SIYFK 278 (638)
Q Consensus 274 ~~~~~ 278 (638)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0011 Score=51.64 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+...+..+...+...|++++|++.|++.++.. +.+...+..+..++.+.|++++|+..+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455566666666666666666666666542 22455666666666666666666666666664
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.44 E-value=0.00034 Score=57.70 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=69.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006614 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM----------VNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+.+++++|.+.++..++.. +.++..|+.+..++.+.++ +++|+..|++..+..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34455667777777666643 4566666666666666654 45888888888887544 777888888888
Q ss_pred HhcC-----------CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006614 206 MQEG-----------YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 206 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...| ++++|++.|++.++.. |+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~---P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 8764 8999999999999876 55555544333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.16 E-value=0.002 Score=49.09 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...+..+...|.+.|++++|+..|++..+..+ .+...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777778888888888887777664 4556677777777777777777777777654
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.70 E-value=0.025 Score=42.08 Aligned_cols=68 Identities=4% Similarity=-0.042 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+.++..+..+..++...++ .++|..++++..+..+. ++.+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445555555555543332 45666666665555322 55555555566666666666666666666554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.68 E-value=0.018 Score=54.86 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455554444444455555555555555543 34444545555555555555555555555554
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.62 E-value=0.011 Score=58.66 Aligned_cols=85 Identities=7% Similarity=-0.090 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CC-CCCC-HHHHHHHHHH
Q 006614 526 GMIDDAYSLLRRMEED---GCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQH-----SE-IKPD-AVSYNTILGC 591 (638)
Q Consensus 526 g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~l~~~ 591 (638)
|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|..++++... .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11122 34455566666666666666666666543 11 1222 3456667777
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 006614 592 LSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~~ 610 (638)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777666543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.61 E-value=0.11 Score=49.51 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 006614 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++....+ |...+|...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~~ 349 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYWI 349 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHHH
Confidence 467777777666666788888888888887765 677777777777778888888888888777644 555555433
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.56 E-value=0.012 Score=58.48 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=28.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKEN-----G-LQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
+++.+...|...|++++|+.++++..+. | ..| ...+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444445555554444444321 1 111 12345555555555555555555555544
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.0054 Score=60.89 Aligned_cols=86 Identities=7% Similarity=-0.035 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHhhhC-----CCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCCH-HHHHHHHHH
Q 006614 174 KMVNKALSIFYQIKSR-----KCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCN-----EGNCFPDT-VTYSALISA 240 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~l~~~ 240 (638)
|++++|+.++++..+. |.. ....+++.+..+|...|++++|..++++.+. .|+..|++ .+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4666666666665431 211 1234567777777777777777777777653 24433444 457777777
Q ss_pred HHccCChHHHHHHHHHHHH
Q 006614 241 FGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~ 259 (638)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777776654
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.48 E-value=0.008 Score=59.74 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=62.5
Q ss_pred HHcCCCHHHHHHHHHHhhhC-----CC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCCH-HHHHH
Q 006614 170 LGKAKMVNKALSIFYQIKSR-----KC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNE-----GNCFPDT-VTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~ 236 (638)
+.+.|++++|+.++++..+. |. .....+++.+..+|...|++++|+.++++++.. |+..|++ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34567888888888777643 11 112456777888888888888888888876532 4433544 46778
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 006614 237 LISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
|...|...|++++|+.++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888888887654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.43 E-value=0.019 Score=43.25 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=37.2
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 167 VNILGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
...+.+.|++++|...|++..+..+. +.. .+..+..+|...|++++|++.|++..+..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34555666666666666666655322 455 666666667777777777777777666554
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.36 E-value=0.13 Score=46.88 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 006614 247 DISAIRLFDEMKENGLQPT---AKIYTTLVSIYFKL-----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA-GRV 317 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 317 (638)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35666777777764 455 55777777778773 78888888888888775543466666777777774 788
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHH
Q 006614 318 EDAYGLFMNMLKEGCK--PDIVLINN 341 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~--p~~~~~~~ 341 (638)
+++.+.+++.+...+. |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888877655 65544443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.35 E-value=0.01 Score=44.76 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....+.+.|++++|++.|+++.+..+ .+.. .+..+...+...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566677788888888887777654 4556 6777777777777777777777777765
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.26 E-value=0.2 Score=54.74 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=38.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006614 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..++..+.+.|..++|+++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 455555555566555555442111 1122334456666665554322 1455566666666666
Q ss_pred CCHHHHHHHHHHH
Q 006614 315 GRVEDAYGLFMNM 327 (638)
Q Consensus 315 g~~~~A~~~~~~~ 327 (638)
|+++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666554
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.20 E-value=0.58 Score=42.66 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc-CCH
Q 006614 528 IDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKS-----GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA-GMF 598 (638)
Q Consensus 528 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~ 598 (638)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.++|++..+.+-.-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777774 455 45677788777774 88888888888888642111356666777777774 888
Q ss_pred HHHHHHHHHHHhCCCC--CCHHhHHHH
Q 006614 599 EEAARLMKDMNAKGFE--YDQITYSSI 623 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~--p~~~~~~~l 623 (638)
++|.+.+++....+.. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8888888888876555 665544443
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.10 E-value=0.082 Score=57.83 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 477 ARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
...|..+...+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444555555555555555555555544
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.98 E-value=0.042 Score=44.71 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHELY 218 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 218 (638)
.+.+.|.+....+ +++..+...+..++.+.+ ++++++.+++.+.+.. +..+...+-.+..++.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4445555554544 467777777777777776 5567777877777653 1113555566777778888888888888
Q ss_pred HHHHhCCC
Q 006614 219 NEMCNEGN 226 (638)
Q Consensus 219 ~~~~~~~~ 226 (638)
+.+++..|
T Consensus 95 ~~lL~ieP 102 (152)
T 1pc2_A 95 RGLLQTEP 102 (152)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCC
Confidence 88877654
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.97 E-value=0.36 Score=37.78 Aligned_cols=67 Identities=22% Similarity=0.154 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006614 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+...++..+..+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++++.-++|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444555566677777777777777777543 3456777777777777777777777777777777765
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.96 E-value=0.065 Score=40.87 Aligned_cols=66 Identities=9% Similarity=-0.028 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRK------CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+..+...+.+.|+++.|...|++..+.. -.+....+..+..++.+.|++++|+..++++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3344445555555555555555555543320 11234455555555555555555555555555543
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.63 Score=38.87 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHH
Q 006614 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
..+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665544 2455666666666666666666666655443 23333344445555444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 006614 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
..+-+.....| -++.....+...|+++++.++|
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 44433333322 1333344444555555555555
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.84 E-value=0.12 Score=42.04 Aligned_cols=82 Identities=21% Similarity=0.099 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 006614 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKP--DIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 356 (638)
...+.+-|.+..+.|. ++..+...+.-++++.+ ++++++.++++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555544 46666666666777766 5557777777777654 12 2444555666677777777777
Q ss_pred HHHHHHHHC
Q 006614 357 KLFNKMEAL 365 (638)
Q Consensus 357 ~~~~~~~~~ 365 (638)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777763
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.65 E-value=0.08 Score=39.31 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 194 TANTYNSMILMLMQEGY---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++..+..+..++...++ .++|..++++.++..+ .++.....+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555555543333 4566666666666554 45555555555566666666666666665554
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.52 Score=39.40 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=22.6
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006614 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
.+.|+++.|.++.+++ .+...|..+.....+.|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555443
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.03 E-value=0.27 Score=37.30 Aligned_cols=61 Identities=11% Similarity=-0.016 Sum_probs=25.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 445 YCSLINGYGKAKRYEAANELFLELKEYC------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
+..+...+.+.|+++.|...|+.+.+.. ......++..+..++.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344444444444444444444433320 112233444444444444444444444444443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.97 E-value=0.37 Score=38.70 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCCHH-HHHHHHHH------HHccCChHHHHHHHHHHHHC
Q 006614 194 TANTYNSMILMLMQEGYY------EKIHELYNEMCNEGNCFPDTV-TYSALISA------FGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~m~~~ 260 (638)
|..+|-..+..+-+.|++ ++.+++|++....-+ |+.. .|...+.. +...++.++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677777777777777777 777788887776544 4321 11111111 11236777777777777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
+-.- ...|......-.+.|++.+|.+++......++.|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3222 6666666666667777777777777777766553
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.70 E-value=0.43 Score=38.32 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHcCCCHHHHHHHHHHhhh
Q 006614 122 EHNSTTYMALIRCLDETRMI------GVMWKSIQDMVRSTCVMGPS-VLSEIVNI------LGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 188 (638)
+.|..+|-..+..+-+.|++ ++..++|++.... .+|+.. .+...+.. +...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 7888888887764 455421 11111111 1223567777777777654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006614 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+ +-=...|......-.++|++.+|.+++......++
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 42 22255666666666667777777777777666554
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.67 E-value=5.3e-06 Score=79.97 Aligned_cols=243 Identities=10% Similarity=0.054 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 006614 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
+.+|..+.++..+.++..+|++.|- ..-|+..|..++.+..+.|.+++-...+.-..+..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 3466666666666666666655432 233555666666776777777766665555444322 23333456666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--------------------CCC
Q 006614 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--------------------LQP 264 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--------------------~~~ 264 (638)
|++.++..+-.+++ . .||+.-...+.+-|...|.++.|.-+|..+.... -.-
T Consensus 126 yAk~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77666655432221 1 1555555566666666666665555554332110 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 344 (638)
++.||..+-.+|...+.+.-|.-.--.++-.. .....++..|-..|.+++-+.+++.-... -......|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 56677777777777776665554443333221 11223556677777777777777766632 2345667777777
Q ss_pred HHHccCCHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhcCChHHH
Q 006614 345 VLGRAGRLEDALKLFNKMEAL-QCK------PNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~ll~~~~~~~~~~~~ 390 (638)
.|++-. +++..+-++..-++ +++ -....|..++-.|..-...+.+
T Consensus 272 LYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 272 LYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 777653 34433333332221 111 1233455555555555555544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.53 E-value=0.33 Score=37.92 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNK---ALSIFYQIKSRKCK-PTANTYNSMILMLMQEGYYEKIHELY 218 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 218 (638)
.+.+.|......| .++..+-..+..++.+..+... ++.+++.+...+.+ ......-.+..++.+.|++++|.+.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444444433 3666666666677777665554 77777777665311 13334445667777777777777777
Q ss_pred HHHHhCCC
Q 006614 219 NEMCNEGN 226 (638)
Q Consensus 219 ~~~~~~~~ 226 (638)
+.+++..|
T Consensus 98 ~~lL~~eP 105 (126)
T 1nzn_A 98 RGLLQTEP 105 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 77777654
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.39 E-value=1.4 Score=34.51 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 006614 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCK 368 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 368 (638)
+.......++.+..+|+-+.-.+++.++... .+|+....-.+..+|.+.|+..+|.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455566667777777777777777775442 3556777777777777777777777777777666643
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.56 E-value=0.64 Score=36.29 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS---AIRLFDEMKENGLQP--TAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A 285 (638)
...+.+-|.+....+. ++..+-..+..++++..+... ++.+++++.+.+ .| .......|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444444444333 455555555555555554433 555555555542 12 233344455566666666666
Q ss_pred HHHHHHHHhC
Q 006614 286 LGLVQEMKGK 295 (638)
Q Consensus 286 ~~~~~~m~~~ 295 (638)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.29 E-value=1 Score=33.06 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 44466777777777788889988888889999999999999988888765 344455688777654
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.98 E-value=5.9 Score=37.00 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=91.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV----QEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~li 308 (638)
+|.++..-|.+.+++++|++++-.-.. .+.+.|+..-|-++. +-..+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555556777777777776644322 244455554444333 4444456666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006614 309 KGLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 309 ~~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
..+.....-+ +=..+.+++++ .| ..-|......+...|.+.+++.+|..-|- .|..++...+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 6655544311 11223333332 12 34467777888889999999998887773 13333345665555454
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 382 FESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 382 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 434 (638)
...+...+. +.+.-. .+-.|...++...|..+++...
T Consensus 178 ~~~~~~~e~---------------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESHTA---------------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGGGH---------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCccH---------------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 444432222 222222 2334666778888887766554
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.19 E-value=8.1e-05 Score=71.95 Aligned_cols=404 Identities=14% Similarity=0.101 Sum_probs=225.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
|+..|..++.+..+.|.+++.++.++...+. ..++.+=+.++-+|++.++..+-.+++ -.||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 4456777888888888888888777655442 444555567777888887755433321 1355555666777
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-------------------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 204 MLMQEGYYEKIHELYNEMCNE-------------------GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
-|...|.++.|.-+|..+..- .....++.||.-+-.+|...+.+.-|.-.--.++-
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----- 227 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 227 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----
Confidence 777777777777666554221 11124667888888889888888776555444432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHH
Q 006614 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-GCKP------DIV 337 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p------~~~ 337 (638)
...-...++..|-..|.+++-+.+++.-.... ......|+-|.-.|++- +.++-.+.++....+ +++. ...
T Consensus 228 hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 228 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 12223456777889999999999998877432 23678888888888776 445444444433332 2211 223
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHH-H---HC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC
Q 006614 338 LINNLINVLGRAGRLEDALKLFNKM-E---AL-------QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS 406 (638)
Q Consensus 338 ~~~~li~~~~~~g~~~~A~~~~~~~-~---~~-------~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 406 (638)
.|..++-.|++-.++|.|....-.- . +. .-..|...|...|..|....-.. ...++..+..+ +.+
T Consensus 306 LW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l--L~DLL~vL~pr-lDh- 381 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL--LNDLLMVLSPR-LDH- 381 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT--SHHHHHHHCTT-CCS-
T ss_pred hHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH--HHHHHHhcccc-CCh-
Confidence 5667777777777777665322110 0 00 01134455555555544433211 12222222111 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH------------HHHHHcCCC
Q 006614 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELF------------LELKEYCGC 474 (638)
Q Consensus 407 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------------~~~~~~~~~ 474 (638)
..+++.+.+.|++......+..... ..+...-.++-+.|....+++.-.... .++.+.
T Consensus 382 ----~RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH--- 451 (624)
T 3lvg_A 382 ----TRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH--- 451 (624)
T ss_dssp ----TTTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---
T ss_pred ----HHHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---
Confidence 1234444555555444433333222 234444455556666666655433221 222221
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006614 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 554 (638)
.-...-..-...|.+.++|++++.+.++ .+ .|.-.|......|+.+-|.++++-.++.| +...|...+
T Consensus 452 eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~L 519 (624)
T 3lvg_A 452 ELIEFRRIAAYLFKGNNRWKQSVELCKK---DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACL 519 (624)
T ss_dssp SSHHHHHHHHHHHHTTCHHHHHSSCSST---TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHh---cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHH
Confidence 1223334445567778888777765432 11 12223445566788888888888888765 455666666
Q ss_pred HHHHhcCChHHHHHH
Q 006614 555 NGLAKSGGPKRAMEI 569 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~ 569 (638)
-.|...=+++-++++
T Consensus 520 ytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 520 FTCYDLLRPDVVLET 534 (624)
T ss_dssp HHTSSSSSCHHHHHH
T ss_pred HHHhhccChHHHHHH
Confidence 666666666666555
No 239
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.67 E-value=1.8 Score=33.77 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 006614 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 563 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3456667777777788999999999999999999999999999988875 455566788887754
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.53 E-value=4.2 Score=46.05 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=58.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 308 (638)
-|..++..+-+.|.++.+.++-....+..-+.+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3445555555555555555554444432111111 1344555555555555555555555544322 233444444
Q ss_pred HHHHhcCC------------HHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHH
Q 006614 309 KGLGRAGR------------VEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDAL-KLFNKMEA 364 (638)
Q Consensus 309 ~~~~~~g~------------~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~ 364 (638)
..+|..|. .++..+++..-.+. .+.....-|..|-..+..+|++..|. -+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 44444433 33344444332221 11111234555555566667766544 45555443
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.45 E-value=12 Score=37.06 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006614 446 CSLINGYGKAKRYEAANELFLELKEYCGCSS-----ARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
..|...+...|++.+|.+++..+.......+ ...+...+..|...+++..|..++.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555555543211111 223444444455555555555555543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.15 E-value=13 Score=36.85 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=86.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCCHHHH--HHHHHHHHH---cCC
Q 006614 403 VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG----KAKRYEAA--NELFLELKE---YCG 473 (638)
Q Consensus 403 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A--~~~~~~~~~---~~~ 473 (638)
..........++..|...|+++...+.+.-+.... .........+++.+. .....+.. ..+.+.... ..+
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccch
Confidence 34455666777777788888887777666555432 112233334443332 12221111 111111100 011
Q ss_pred CC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----C
Q 006614 474 CS---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE----D 541 (638)
Q Consensus 474 ~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~ 541 (638)
.. .......|...|...|++.+|..++..+... |.... ...+...+..|...+++.+|..+++++.. .
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 11 1233455666677777777777777766432 21111 23445555666677777777777766532 1
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006614 542 GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 542 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
...|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11222 23345555666666777777666666554
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.77 E-value=21 Score=38.70 Aligned_cols=274 Identities=13% Similarity=0.038 Sum_probs=146.7
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHH-HHhCC-CC-----CCHHHHHHHHH
Q 006614 345 VLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIKSLFESKAPASEASAWFEK-MKANG-VL-----PSPFTYSILID 415 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~-m~~~~-~~-----~~~~~~~~li~ 415 (638)
+....|+.++++.+++.....+...+. ..-..+--++...|...++ ..++.. +.... +. +....-.++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~-~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDT-TDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHH-HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 456677777787777765432101122 2222233344555555444 444443 33221 00 11122233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCC
Q 006614 416 GFCKTNR-VEKAHLLLEEMEEKGFPPCP--AAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 416 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
++...|. -+++.+.+..+.... .... .+-..+...+.-.|+-+....++..+.+. ...+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCC
Confidence 3433332 246666676666543 1111 12223444456778888888888877663 22222333344445557889
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 006614 493 LSDAVDLFNEMKKLRCKPDV-YTYN---ALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~-~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
.+.+..+.+.+... .+. .-|. ++.-+|+..|+......++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99888888888764 232 2233 33445677888877777999888752 2233333334445556777777788
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHhHHHHHHHHhc
Q 006614 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
+++.+.+.+ .|....-..+.-+....|+. .+|..++..+.. .+|..+-..-+-+++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 887776643 34444444454555555554 577888888863 4455544444444443
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.42 E-value=1.2 Score=43.35 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006614 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
...++..+...|++++|+..+..+....+ -+...+..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34466677778888888888877777665 5777788888888888888888887776643 366666544
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.29 E-value=1.2 Score=36.57 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
++..+.+++...|+|.+|...|++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445566666666666666666643
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.80 E-value=3.3 Score=32.45 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|++.+-.....++.+..+ ..+++.+++.+.+.+.......+-.+..++.+.|++++|.+..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4555555555555555443 23455566665554322234444555566666666666666666666654
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.56 E-value=2.8 Score=44.36 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=34.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 006614 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
.|...|+++-|+++-++.+..- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456677777777777776642 224667777777777777777777777665
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.45 E-value=12 Score=42.39 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=101.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++..+.+.+.++-|.++..... .++...-.+..++...|++++|.+.|.+... +.. .+... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~-~~~~l----------~~ 880 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLY-SHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCT-TCCCS----------CS
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhc-ccchh----------hh
Confidence 4444555566655555443332 2444444566777778888888888876532 110 11000 00
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 006614 246 RDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV----YTYTELIKGLGRAGRVED 319 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 319 (638)
.... +..+.... ...-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+.+.+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 11122211 1123345778888999999999999888777654322222 257888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006614 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 356 (638)
|...+-.+..... -......|+...|..|..+.-.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhh
Confidence 9999988876543 3556777888888887765543
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.15 E-value=14 Score=34.24 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 006614 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL----VQEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~li 308 (638)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555556677777777777654322 24445555444443 44444556666766666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 006614 309 KGLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 309 ~~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
..+.....-+ +=.++.+.+++ .| ..-|......+...|.+.|++.+|..-|-. +..-+...+..++-.+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 6655432211 12333444433 11 234677888888899999999888876642 1111344454444444
Q ss_pred Hhc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 382 FES---KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 382 ~~~---~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 434 (638)
... +...+. +.+. ...+-.|.-.|+...|..+++...
T Consensus 176 ~~~~~~~~~~e~---------------dlf~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV---------------AEFF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH---------------HHHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH---------------HHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333 222221 1111 122233556778888888877654
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.13 E-value=1.8 Score=31.87 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.-+..+-++.+...+..|++.+..+.++++-+-+++..|.++|+-++.+ +.....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3467777888888888899999999999999999999999999888765 2233445666554
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.08 E-value=7.4 Score=30.97 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+++.+-..+..++.+..+ ..+++.+++.+...+........-.+..++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444445544442 23455555555543322233333445556666666666666666666654
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.83 E-value=14 Score=35.55 Aligned_cols=118 Identities=9% Similarity=0.041 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCCHHHH
Q 006614 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-----PSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 179 (638)
.+..+..++|+...+..-.....=.-++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++
T Consensus 79 ~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 79 VQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 3566788899976542111111223678899999999999999988877522212 24566677788888999998
Q ss_pred HHHHHHhhhC--CCCCCHHHHH----HHHHHHH-hcCCHhHHHHHHHHHH
Q 006614 180 LSIFYQIKSR--KCKPTANTYN----SMILMLM-QEGYYEKIHELYNEMC 222 (638)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~~~~----~l~~~~~-~~g~~~~A~~~~~~~~ 222 (638)
...+....+. .+.+++.... .-...++ ..++|.+|...|-+..
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8888777543 1112332221 2223455 6788888888777664
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.26 E-value=3.6 Score=32.28 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006614 545 PDINSHNIILNGLAKSGGP---KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
|+..+--.+..++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444444444432 2344455444432210112333334445555555555555555555
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.96 E-value=2.6 Score=44.62 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHhhhC---
Q 006614 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG---------GPKRAMEIFTKMQHS--- 576 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~~~--- 576 (638)
+.+..=|..|.....+.+.+++|.+.|+..+.. +-+...+..|+..|.+.+ +.+..+...-++..-
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 345556888888888888888888888888875 467888888888888776 666666666665421
Q ss_pred -CCCCCHHHHHHHHHHHHccC
Q 006614 577 -EIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 577 -~~~p~~~~~~~l~~~~~~~g 596 (638)
-...+......+...+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 11233444445555444444
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.14 E-value=4.2 Score=39.50 Aligned_cols=55 Identities=4% Similarity=-0.029 Sum_probs=26.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006614 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
++..+...|++++|...+..+.... +.+...|..++.+|.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444555555554444444331 224445555555555555555555555443
No 256
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.82 E-value=3.7 Score=32.08 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-++.+...+..|++.+..+.++++-+-+++..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 56677777778888899999999999999999999999999888765 2334455666654
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.13 E-value=11 Score=27.68 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34566665555555432 11222222345666777777776666553 56776666653 356677777766666
Q ss_pred HHHhCC
Q 006614 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.04 E-value=10 Score=27.70 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006614 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|++++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 34566666665555432 22222223345667777777776665543 57777776653 456777777777776
Q ss_pred HHHhCC
Q 006614 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.46 E-value=11 Score=30.85 Aligned_cols=121 Identities=12% Similarity=0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC---H----HHHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCCCH
Q 006614 126 TTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMG---P----SVLSEIVNILGKAKMVNKALSIFYQIKSR--KCKPTA 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 195 (638)
.++-.-++.+...|.|+.|+-+..-++... ..++ + .++..+.+++...|++..|...|++..+. ...-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788889999999988877754431 1222 1 35677888899999999999999986432 111011
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006614 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.++.++. . ...... .... ..+...--.+...+.+.|+.++|+.+++.+..+
T Consensus 101 s~~~~~~---~-~ss~p~---------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG---N-SASTPQ---------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc---c-cCCCcc---------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111110 0 000000 0011 134445555777788888888888888876543
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.38 E-value=43 Score=32.24 Aligned_cols=92 Identities=12% Similarity=-0.039 Sum_probs=50.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHH---
Q 006614 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPC-----PAAYCSLINGYGKAKRYEAANELFLELKEY--CGCSSARVYA--- 481 (638)
Q Consensus 412 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~--- 481 (638)
.++..|...|++.+|.+++.++.+.--..| ...+..-++.|...+++.++...+...... .+.+++.+-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777788888888777777765311111 224555566666777777777777665432 1212222211
Q ss_pred -HHHHHHH-ccCCHHHHHHHHHHH
Q 006614 482 -VMIKHFG-KCGRLSDAVDLFNEM 503 (638)
Q Consensus 482 -~li~~~~-~~g~~~~A~~~~~~m 503 (638)
.-...+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 1122234 566666666665544
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.24 E-value=33 Score=30.79 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCC
Q 006614 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~ 386 (638)
....+.|++++|+.....-++..+. |...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 4466788888888888888887655 777778888888888888888888888766441 1223344444443
Q ss_pred hHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 006614 387 PASEASAWFEKMKANGVLP-----SPFTYSILIDGF--CKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 387 ~~~~~~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~ 436 (638)
+..-..+-..+-.| ...-...++.+. ...|+.++|..+-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233222222 122333444443 3458888888887777553
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=79.09 E-value=77 Score=34.44 Aligned_cols=260 Identities=12% Similarity=0.032 Sum_probs=137.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-------CCChhhHHHHHH
Q 006614 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDI--VLINNLINVLGRAGRLEDALKLFNKMEALQC-------KPNVVTYNTVIK 379 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~p~~~~~~~ll~ 379 (638)
-+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466778888888877766542111222 2333344445555655567777766554221 011111222222
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHcc
Q 006614 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYS--ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN--GYGKA 455 (638)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~ 455 (638)
++...|...+.+...+..+....- +...... .+...++-.|+-+....++..+.+.. +......+.. ++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 333334333333444444443211 1111122 23334556778777777887776542 3333333333 44467
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 006614 456 KRYEAANELFLELKEYCGCSSARVYA--VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYS 533 (638)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (638)
|+.+.+..+.+.+... ..|....-. .+.-+|+..|+......++..+.+.. ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888888887763 222222222 33456778888777777888887642 2223323333334555677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHhhh
Q 006614 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGP-KRAMEIFTKMQH 575 (638)
Q Consensus 534 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 575 (638)
+++.+.+.+ .|....-..+.-+....|.. .+|...+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 776666543 34444334444455555554 578888888875
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.32 E-value=24 Score=34.60 Aligned_cols=61 Identities=5% Similarity=-0.075 Sum_probs=35.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 006614 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP--DVYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (638)
+...+...|.+.|++++|.+.+.++......+ -...+-.++..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556666666677777776666665532222 23445555566666666666666666554
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.24 E-value=47 Score=30.98 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 439 PPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNAL 518 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 518 (638)
.-++.....+...|.+.+++.+|...|- .|..++...+..++.-+...+...+ +|...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3567778888889999999988887763 1233334555444433333322111 122222333
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 006614 519 MSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
+ -|...++...|..+++...+
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHHH
Confidence 3 45667888888887766654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.43 E-value=28 Score=29.63 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
..++.++|..|...+....-...|..+...+...|++.+|.++|+.-++++-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 456666666666555544455556666666666666666666666666655444
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.31 E-value=49 Score=30.62 Aligned_cols=82 Identities=11% Similarity=-0.089 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006614 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC---GRLSDAVDLFNEMKKLRCKPDVYTYN 516 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 516 (638)
-++.....+...|.+.|++.+|...|-.- ...+...+..++.-+... |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 47788888889999999999888766521 111233444444333332 33333211 1112
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 006614 517 ALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~m~~ 540 (638)
++ -.|...|+...|..+++...+
T Consensus 194 aV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred HH-HHHHHhcCHHHHHHHHHHHHH
Confidence 22 235567888888888887653
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.30 E-value=15 Score=36.09 Aligned_cols=61 Identities=5% Similarity=-0.074 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006614 162 VLSEIVNILGKAKMVNKALSIFYQIKSR--KCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+...+...|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...++++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5566677777777777777777777543 333345566677777777777777777777764
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.15 E-value=37 Score=26.98 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChh
Q 006614 298 ALTVYTYTELIKGLGRAGR---VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV 372 (638)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 372 (638)
.|+..+--.+.-++.+... ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.+..+.+.+. .|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcH
Confidence 3455555555555555554 3456666766666543323344445666777777777777777777663 35443
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.74 E-value=30 Score=25.40 Aligned_cols=78 Identities=4% Similarity=-0.066 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006614 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
...++|.-+-+|....++ ...+-..-+..+...|+|++|..+.+.. +.||...|.++- -.+.|.-+++...
T Consensus 21 H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHH
Confidence 345666666666665553 3333334445556666666666555432 455555554442 2355555555555
Q ss_pred HHHhhhC
Q 006614 183 FYQIKSR 189 (638)
Q Consensus 183 ~~~~~~~ 189 (638)
+..+...
T Consensus 92 L~~la~s 98 (116)
T 2p58_C 92 LNRLARS 98 (116)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 5555544
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=69.39 E-value=41 Score=28.58 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=33.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006614 244 LGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
.+...++.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445566777777766655433 3345556666666666666666666666655554
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.96 E-value=29 Score=25.43 Aligned_cols=77 Identities=5% Similarity=-0.098 Sum_probs=39.3
Q ss_pred chHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 006614 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIF 183 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 183 (638)
..++|.-+-+|....++ ...+-..-+..+...|+|++|..+.+.. +.||...|.++- -.+.|.-+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 34566666666665552 3333333444555666666665544422 445555444432 23555555555555
Q ss_pred HHhhhC
Q 006614 184 YQIKSR 189 (638)
Q Consensus 184 ~~~~~~ 189 (638)
..+...
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 555544
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.38 E-value=1.3e+02 Score=31.05 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006614 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..-...+..+++.+++...+.++.. .+.+...-.....+....|+..+|......+-..+.. .......++..
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~--~p~~c~~l~~~ 145 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKLFSV 145 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CcHHHHHHHHH
Confidence 3345555666667776666654432 1335555555667777777777777777776665542 23333444444
Q ss_pred HHccC
Q 006614 241 FGKLG 245 (638)
Q Consensus 241 ~~~~g 245 (638)
+.+.|
T Consensus 146 ~~~~g 150 (618)
T 1qsa_A 146 WRASG 150 (618)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 44333
No 273
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.10 E-value=67 Score=27.29 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHccCC
Q 006614 229 PDTVTYSALISAFGKLGR 246 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~ 246 (638)
++...-...+.++.+.|+
T Consensus 93 ~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444444
No 274
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.28 E-value=78 Score=30.96 Aligned_cols=94 Identities=9% Similarity=0.109 Sum_probs=63.0
Q ss_pred hHHHHHHhccccchHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 92 HRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG 171 (638)
Q Consensus 92 ~~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (638)
..++.++.....+++.|+++-. +.|++=....|..-.+.+...|+|++|.++.-...+ |.-.++.+.+.+-.+=.
T Consensus 332 ~~ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~ 406 (494)
T 1bpo_A 332 ENIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPA 406 (494)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCC
T ss_pred ccchhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCC
Confidence 4677888887888998877665 566666677888889999999999999888776543 34556666554433333
Q ss_pred cCCCHHHHHHHHHHhhhCC
Q 006614 172 KAKMVNKALSIFYQIKSRK 190 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~ 190 (638)
..|+..--+..|..+.+.|
T Consensus 407 ~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 407 QPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp CTTSCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 3444444455555554443
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.79 E-value=90 Score=26.42 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-...+..+.+.|.. .+...+..++. .+++.+-...+.++++.|+.+. ...+..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHH
Confidence 455555566666666663 34444444444 3567777777777777776433 333444433 357777777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
++.+.|..+ +...+.++... ++...-...+.++.+.|.. ++...+..+.+ .++..+-...+.++.+.+. .
T Consensus 104 aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALKD----EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHhCcHH-HHHHHHHHHhC----CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 777777643 44445555432 6666666677777777654 34455555543 2566666666666666665 3
Q ss_pred HHHHHHHHHHh
Q 006614 284 KALGLVQEMKG 294 (638)
Q Consensus 284 ~A~~~~~~m~~ 294 (638)
++...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 44444444444
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=56.01 E-value=83 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
+.++|..|...+....-...|......+-..|++.+|.++|..-++++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444555555444443444445555555555555555555555555544444
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.54 E-value=1.2e+02 Score=27.18 Aligned_cols=52 Identities=19% Similarity=0.107 Sum_probs=24.1
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006614 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.+.|++++|++....-++..+ .|......++..+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P--~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344444454444444444443 3444444444444444444444444444443
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.51 E-value=92 Score=29.43 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHHhCCCCC
Q 006614 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM--FEEAARLMKDMNAKGFEY 615 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p 615 (638)
.+.++.-|...|+.++|.+.++++....+.+ ......+..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3455666666677777777777664211111 2223344444444332 334555666665555433
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.20 E-value=48 Score=26.73 Aligned_cols=75 Identities=4% Similarity=0.005 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
..++.|+......+.---. .+++.++|..|.+.|+.... ..|......+-..|++++|.++|..-.+.+-.|-..
T Consensus 62 ~~YknD~RyLklWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 62 KKYHNDPRFISYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp GGGTTCHHHHHHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccccCCHHHHHHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4445565443333332222 23367777777777665544 456667777777888888888888888776666443
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.60 E-value=1e+02 Score=27.01 Aligned_cols=24 Identities=8% Similarity=-0.083 Sum_probs=18.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 006614 130 ALIRCLDETRMIGVMWKSIQDMVR 153 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~ 153 (638)
--++.+...++|++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457788888999999888877543
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.43 E-value=32 Score=30.94 Aligned_cols=17 Identities=0% Similarity=-0.013 Sum_probs=7.9
Q ss_pred HHHHHhcCChHHHHHHH
Q 006614 132 IRCLDETRMIGVMWKSI 148 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~ 148 (638)
+...++.|+.+.+..++
T Consensus 9 L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33445556654443333
No 282
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.08 E-value=34 Score=30.73 Aligned_cols=51 Identities=6% Similarity=-0.020 Sum_probs=27.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 006614 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINS--HNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
..+..|+.....++.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 188 ~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33455665555667777777776554321 1123444556677765555544
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.03 E-value=1.4e+02 Score=25.23 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=20.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
-.+.+.|+-.+.+|++.| .|.-..-..++.+.-.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 356666666777777666 544444444444444433
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.73 E-value=54 Score=26.86 Aligned_cols=77 Identities=8% Similarity=-0.014 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 118 RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
...+..|+......+.---.. ++..++|..|.+.++.... ..|......+-..|++.+|.++|..-.+.+..|...
T Consensus 56 ~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 56 EKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 344556665444444322222 3356678888777666554 456667777788889999999998888887776554
Q ss_pred H
Q 006614 197 T 197 (638)
Q Consensus 197 ~ 197 (638)
.
T Consensus 133 L 133 (164)
T 2wvi_A 133 L 133 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.44 E-value=42 Score=29.05 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 006614 213 KIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ 263 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 263 (638)
.+.++|..|...+....-...|..+...+-..|++.+|.++|+.-++++-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 344444444444443334444555555555555555555555554444333
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.04 E-value=1.7e+02 Score=27.53 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006614 304 YTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
...+|.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4455666666777777777666654
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.80 E-value=1.6e+02 Score=24.56 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006614 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
++...-...+.++.+.|+.+ +...+..+.+ .++..+-...+.++.+.++
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 44444444455555544432 2233333332 2344444444444444443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.54 E-value=1.7e+02 Score=25.69 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKL--RCKP----DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 556 (638)
-++.+....++++|..++++..+. +.++ +.......+..-+....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 366777788888888888776542 1121 1111122222222322333333444444 22 3455555566677
Q ss_pred HHhcCChHHHHHHHHHhhh
Q 006614 557 LAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~ 575 (638)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777766653
No 289
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.41 E-value=1.5e+02 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH
Q 006614 245 GRDISAIRLFDEMKENGLQPTAK 267 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~ 267 (638)
.+.|.|+-.+.+|++.|-.|.-.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~I 43 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYV 43 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 45555555555555555443333
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.33 E-value=43 Score=29.11 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=8.3
Q ss_pred HccCChHHHHHHHHHHHHCC
Q 006614 242 GKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g 261 (638)
+..|+.+....+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 33444444444444433333
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.61 E-value=68 Score=27.79 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=13.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 202 ILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...++.|+.+-+..+++.+.+.+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344455666666666655554433
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.42 E-value=79 Score=27.38 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=50.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 118 RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
...+..|+......+.-- . ..++..++|..|.+.|+.... ..|......+-..|++.+|..+|..-.+.+-.|-..
T Consensus 110 ~~rYknD~RyLklWl~Ya-~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 110 NPLYKDDVRYLRIWMQYV-N--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp CGGGTTCHHHHHHHHHHH-T--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred cccccCCHHHHHHHHHHH-H--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 344556664443333222 1 124667788888888766554 456777778888999999999999988887666443
No 293
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.13 E-value=1.3e+02 Score=24.90 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=28.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH-HccCCHHHHHHHHHHHHHCCCCCCh
Q 006614 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV---LINNLINVL-GRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
.+...+..|+.+.-.++.+.+++.|..++.. -.+.|..++ ....+.....++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence 3444445555554455555555555544322 111121111 1122334445556666666655443
No 294
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.75 E-value=3.9e+02 Score=27.70 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=13.4
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 006614 345 VLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~ 363 (638)
-+...|++++|..+|....
T Consensus 452 ~ae~~G~~~dAi~LY~La~ 470 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE 470 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHhc
Confidence 4556778888887777654
No 295
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.83 E-value=2e+02 Score=23.82 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006614 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-...+..+.+.+..+ +...+.+++. .+++.+-...+.++++.|..+.. ..+..+.. .++...-...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 98 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAV 98 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 4444444555555555432 3333333333 34666666666777776654333 33333333 346667677777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006614 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
++.+.|..+ +...+..+... ++...-...+.++.+.|+. ++...+..+.+. ++..+-...+.++.+.|..
T Consensus 99 aL~~~~~~~-~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 99 ALGQIGDER-AVEPLIKALKD----EDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---EDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHCCGG-GHHHHHHHTTC----SSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHhCcHH-HHHHHHHHHcC----CCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-
Confidence 777777643 44444444432 6666666667777776653 344555555442 4666666666666666653
Q ss_pred HHHHHHHHHHh
Q 006614 284 KALGLVQEMKG 294 (638)
Q Consensus 284 ~A~~~~~~m~~ 294 (638)
++...+..+.+
T Consensus 169 ~~~~~L~~~l~ 179 (201)
T 3ltj_A 169 RVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
No 296
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.74 E-value=2.2e+02 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006614 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
.+.+.|+-.+.+|++.|-.|.-..-..++.+.-.
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 4556666666666666544444444444444333
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.13 E-value=95 Score=25.86 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=31.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCC
Q 006614 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKI---YTTLVSIYF-KLGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.+...+..|+.+.-.++.+.+.+.|..++... ++.|..++. ...+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 44445555665555666666677766555322 112221111 12233444556666666665544
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.90 E-value=1.7e+02 Score=23.30 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
+.+.|..+ ...-..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 18 l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44555543 233334455555555566677777777666655566555555555555543
No 299
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.76 E-value=5.3e+02 Score=28.27 Aligned_cols=131 Identities=13% Similarity=0.004 Sum_probs=62.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 131 LIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
++..|...|.++-+.++. . -++.++..-..+.++|...|++++|...|++... |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc----------
Confidence 455555666655443322 2 2444555555566667777777777777766542 21111000000
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 006614 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFKLG 280 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 280 (638)
.+....++... ........-|..++..+-+.+.++-+.++-+..++.--+.|. ..|+.+..+.+..|
T Consensus 880 ~~~~~~ll~~~---e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY---HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT---TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc---cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00000011000 000012235677777777777777777777777654222232 24556666655443
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.60 E-value=2.1e+02 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006614 271 TLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
.++.-|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34555555555555555555553
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.85 E-value=4.5e+02 Score=28.81 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHhccC
Q 006614 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI----TYSSILEAVGKVD 631 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g 631 (638)
..|..++..|-+.|-++-+.++.+...+.--.-|.. .|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 367889999999999999999999888642222332 4566666655443
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.12 E-value=2.3e+02 Score=22.71 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006614 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
+.++|..|...+....-...|......+-..|++.+|.++|+.-++++-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444444444433334444444444445555555555555544444333
No 303
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.09 E-value=3.2e+02 Score=24.20 Aligned_cols=168 Identities=15% Similarity=0.020 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH----HHHHHHHHH-hhhCCCCCCHHHHHHHHHHH
Q 006614 131 LIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV----NKALSIFYQ-IKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+.++++.|. .++...+..++. .+++.+-...+.++++.|.. .....++.. +.. .++...-...+.++
T Consensus 43 A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~---d~~~~vr~~a~~aL 115 (280)
T 1oyz_A 43 SARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN---DKSACVRATAIEST 115 (280)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH---CSCHHHHHHHHHHH
T ss_pred HHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 3344444442 234444444443 34555555555566555532 222233332 122 23555555555555
Q ss_pred HhcCC-----HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006614 206 MQEGY-----YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 206 ~~~g~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
.+.|. ...+...+..+... ++...-...+.++...|+. .+...+..+.+. ++..+-...+.++...|
T Consensus 116 ~~l~~~~~~~~~~~~~~L~~~l~d----~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 116 AQRCKKNPIYSPKIVEQSQITAFD----KSTNVRRATAFAISVINDK-ATIPLLINLLKD---PNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHTTC----SCHHHHHHHHHHHHTC----CCHHHHHHHHTC---SSHHHHHHHHHHHHHHT
T ss_pred HHHhccCCcccHHHHHHHHHHhhC----CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHhhc
Confidence 55442 33444544444432 5666666666666666653 244444444432 45444444444444443
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006614 281 -EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 281 -~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
....+...+..+... ++...-...+.++.+.|+
T Consensus 188 ~~~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 188 YDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CCCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCC
Confidence 123344444444332 344444455555555554
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.08 E-value=1e+02 Score=25.05 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCC
Q 006614 164 SEIVNILGKAKMVNKALSIFYQIKSR--KCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 210 (638)
..++..+...+..-.|.++++.+.+. ++..+..|--.-+..+.+.|-
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 44445555555555566666665554 444455444444455555443
No 305
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.79 E-value=1.6e+02 Score=23.27 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.++..+..|....+..+...|
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455443332 22333344444445556666666665555555555444444444444
No 306
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.72 E-value=2e+02 Score=26.54 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCCH
Q 006614 534 LLRRMEEDGCVPDI 547 (638)
Q Consensus 534 ~~~~m~~~~~~p~~ 547 (638)
+.+-+++.|-.||.
T Consensus 316 iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHHTTCCC--
T ss_pred HHHHHHHCcCCCCC
Confidence 34445556655543
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.32 E-value=2.2e+02 Score=22.05 Aligned_cols=99 Identities=10% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006614 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV--EDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 347 (638)
..++.-|...|+.++|.+.++++..-... .......+..++-+.++- +....++..+...|+-+.......+...+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~ 89 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 89 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHh
Q ss_pred ccCC--------HHHHHHHHHHHHHCCCCC
Q 006614 348 RAGR--------LEDALKLFNKMEALQCKP 369 (638)
Q Consensus 348 ~~g~--------~~~A~~~~~~~~~~~~~p 369 (638)
...| ++...+++..+...|+-|
T Consensus 90 ~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 90 EIPDINLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred hChHhhcCccchHHHHHHHHHHHHHCCCCC
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.97 E-value=1.7e+02 Score=27.39 Aligned_cols=147 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 006614 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFES 384 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 384 (638)
..++.-|...|+.++|.+.++++......+..+........-.+....+.+..++..+.+ ....+-..+..++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~----~~~is~~~~~~Gf--- 87 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLC----AGHLSTAQYYQGL--- 87 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----TTSSCHHHHHHHH---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----CCCCCHHHHHHHH---
Q ss_pred CChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 006614 385 KAPASEASAWFEKMKANGV-LPSPFTYSILIDGFCKTNRV----EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 385 ~~~~~~~~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
..+++.+.+..+ .|....+-.-+-+.+-.... +-...+.+.+...| ........++..+++....+
T Consensus 88 -------~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g--~~~~fl~~vl~~l~~~~g~~ 158 (339)
T 1ug3_A 88 -------YEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLG--KAASLLLEILGLLCKSMGPK 158 (339)
T ss_dssp -------HHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHT--CHHHHHHHHHHHHHHHHCHH
T ss_pred -------HHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHcCHH
Q ss_pred HHHHHHHH
Q 006614 460 AANELFLE 467 (638)
Q Consensus 460 ~A~~~~~~ 467 (638)
.+.++|.+
T Consensus 159 ~l~~~~~~ 166 (339)
T 1ug3_A 159 KVGTLWRE 166 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.25 E-value=1.4e+02 Score=24.34 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=5.6
Q ss_pred CHHHHHHHHHHHHh
Q 006614 281 EVEKALGLVQEMKG 294 (638)
Q Consensus 281 ~~~~A~~~~~~m~~ 294 (638)
..-.|.++++.+.+
T Consensus 47 ~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 47 THYTPESLYMEIKQ 60 (162)
T ss_dssp SCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 33334444444433
No 310
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=24.92 E-value=5.8e+02 Score=26.21 Aligned_cols=347 Identities=8% Similarity=-0.049 Sum_probs=167.8
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCHH
Q 006614 117 RRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTAN 196 (638)
Q Consensus 117 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (638)
+.++.+.....-+..+..+.+.+++......+.. .+.+...--....+....|+.++|......+-..|. ..+.
T Consensus 64 ~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~ 137 (618)
T 1qsa_A 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPN 137 (618)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCT
T ss_pred HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcH
Confidence 4455444444555666667777776655543321 233444444455566667777667666666655442 2455
Q ss_pred HHHHHHHHHHhcCCH--hHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----------Hcc-CChHHHHHHHHHHHHCCC
Q 006614 197 TYNSMILMLMQEGYY--EKIHELYNEMCNEGNCFPDTVTYSALISAF-----------GKL-GRDISAIRLFDEMKENGL 262 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~-g~~~~A~~~~~~m~~~g~ 262 (638)
.+..++..+.+.|.+ +....-++.+...+. ...-..++..+ ... .+...+..... . +
T Consensus 138 ~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~----~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~---~--~ 208 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQDPLAYLERIRLAMKAGN----TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFAR---T--T 208 (618)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHH---H--S
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHh---c--c
Confidence 566666666665543 234444444444332 11111111111 000 01111111111 1 1
Q ss_pred CCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006614 263 QPTAKI---YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT----ELIKGLGRAGRVEDAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 263 ~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 335 (638)
.++... +...+.-+.+ .+.+.|...+....+... .+..... .+...+...+...++...+....... .+
T Consensus 209 ~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~ 284 (618)
T 1qsa_A 209 GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CC
Confidence 222221 1222333333 378899999988865432 2333222 23333344453556666776655442 34
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006614 336 IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILID 415 (638)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~ 415 (638)
.....-.+....+.|+++.|...|+.|..... .......-+-+++...|+..++ ..+|..+... .+ -|..+.
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a-~~~~~~~a~~---~~--fYg~lA- 356 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEA-KEILHQLMQQ---RG--FYPMVA- 356 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHH-HHHHHHHHTS---CS--HHHHHH-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHH-HHHHHHHhcC---CC--hHHHHH-
Confidence 44444455555677999999999988865221 1222233344455666776666 7777777642 12 233221
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---CHH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 006614 416 GFCKTNRVEKAHLLLEEMEEKGFPP---CPA---AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK 489 (638)
Q Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 489 (638)
..+.|..... ....+.+ ... .-...+..+...|....|...+..+.+. . +..-...+......
T Consensus 357 -a~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~ 425 (618)
T 1qsa_A 357 -AQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFN 425 (618)
T ss_dssp -HHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHH
T ss_pred -HHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHH
Confidence 1222221000 0000001 000 1122345567788888888888877764 2 22333344444556
Q ss_pred cCCHHHHHHHHH
Q 006614 490 CGRLSDAVDLFN 501 (638)
Q Consensus 490 ~g~~~~A~~~~~ 501 (638)
.|.++.++....
T Consensus 426 ~~~~~~~v~~~~ 437 (618)
T 1qsa_A 426 NQWWDLSVQATI 437 (618)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCChHHHHHHHH
Confidence 677776665544
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.78 E-value=70 Score=27.58 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=24.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHh
Q 006614 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY--NTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+...+..|+.+-+..+++. |..++.... .+.+....+.|+.+-+.-+++...+
T Consensus 181 L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 4444566776654444443 333321110 1233444566776666555554433
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.61 E-value=1.8e+02 Score=23.08 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
+-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444444444433344444444444444443
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.24 E-value=5.4e+02 Score=25.66 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-CCCH--HHH-HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006614 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTA--NTY-NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+|.+++.|...+.++.|..+..+..--.. .++. ..| -.+...+.-.+++.+|.+.+....+.-
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 45678888888888888888888887742110 1111 222 234566777888888888888877654
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.14 E-value=53 Score=29.05 Aligned_cols=20 Identities=10% Similarity=-0.075 Sum_probs=9.0
Q ss_pred HccCChHHHHHHHHHHHHCC
Q 006614 242 GKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g 261 (638)
++.|+.+....+++.+.+.|
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 34444444444444444433
No 315
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.03 E-value=3.3e+02 Score=23.04 Aligned_cols=32 Identities=6% Similarity=0.096 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006614 491 GRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
.+++.|+-.+-+|.+.| .|.-..-..++.+..
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE 59 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYE 59 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 44555555555555555 443333333333333
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.85 E-value=1.7e+02 Score=22.80 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAG-RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
+.+.|..++.. -..++..+...+ ..-.|.++++.+.+.++..+..|...-++.+.+.|
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445543332 223334444444 45556666666666555555555444444444443
No 317
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.68 E-value=1.8e+02 Score=19.95 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHhccC
Q 006614 599 EEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344445555544433334444444444444433
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.66 E-value=1.1e+02 Score=27.70 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 006614 270 TTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+.+...+..|+.+-+.-+++.
T Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 162 LSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHcChHHHHHHHHHc
Confidence 3444455556666555444443
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.39 E-value=1e+02 Score=27.77 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 006614 414 IDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~~~ 432 (638)
+...+..|+.+-+..+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3334455555544444443
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.26 E-value=2.9e+02 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH
Q 006614 200 SMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
.++.=|...|+.++|...++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444455555555555554
No 321
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=22.65 E-value=4.6e+02 Score=24.20 Aligned_cols=131 Identities=14% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh
Q 006614 487 FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS---GGP 563 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~ 563 (638)
+...|++++|+..|+.+. +...+.......+.+++.+++....+ .....-+..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHhccCCcc
Q 006614 564 KRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI-TYSSILEAVGKVDEDR 634 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~ 634 (638)
.+..++---+..-++.|. .-+....+..+.+.+++..|..+.+++++.+-.|+.. .-..++..|-+.+...
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da 260 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDA 260 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
No 322
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.54 E-value=3.1e+02 Score=22.24 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=37.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHccCCHHHHHHHHHHHHH
Q 006614 312 GRAGRVEDAYGLFMNMLKEGCKP--DIVLINNLIN------VLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 312 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~------~~~~~g~~~~A~~~~~~~~~ 364 (638)
...|++-+|-++++..-.....+ +...|..||. ...+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34488888888888888775555 4455666666 23457888888888888754
No 323
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=22.48 E-value=2.6e+02 Score=28.16 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006614 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
.+.......++..+-+--+...-.-++..|.+.|-.+.|.++++.+-..-. .+...+ ..+..|++.|+++..
T Consensus 497 ~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l--~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 497 RSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML--SAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred hhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH--HCccHH-HHHHHHHHcCChhhc
Confidence 334444455554443333555666677777777777777777777765433 333444 555566777776654
No 324
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.26 E-value=96 Score=26.66 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=7.8
Q ss_pred HHHHHhcCCHHHHHHHH
Q 006614 414 IDGFCKTNRVEKAHLLL 430 (638)
Q Consensus 414 i~~~~~~g~~~~A~~~~ 430 (638)
+...+..|+.+-+..++
T Consensus 181 L~~A~~~~~~~~v~~Ll 197 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLL 197 (240)
T ss_dssp HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444555555443333
No 325
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.19 E-value=1.5e+02 Score=23.46 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=27.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 350 (638)
+.+.|..++.. -..++..+...+ .-.|.++++.+.+.++..+..|...-++.+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34455554332 222333333444 4456666666666655555555544445554444
No 326
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.14 E-value=5e+02 Score=24.47 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006614 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK-RYEAANELFLELKEYCGCSSARVYAVMIKHF 487 (638)
Q Consensus 409 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 487 (638)
....++.-|...|+.++|...++++.....-.....+..+..++-+.. ..+.+..++..+...+.-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HccCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 006614 488 GKCGRLS----DAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG-- 561 (638)
Q Consensus 488 ~~~g~~~----~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 561 (638)
....+.. .|..++.++...-+.-+..+...+...+...+...-...++..+.+..-. ..+...+.+.|
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~G~------~~l~~l~~~sgl~ 167 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDR------EWLTELFQQSKVN 167 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHSCH------HHHHHHHHHHTCC
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhcCH------HHHHHHHHHcCCC
Q ss_pred ----------ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhcc
Q 006614 562 ----------GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 562 ----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
..+.-.++++.---..+.|-...-..|.+.+...-..++...+++.-.+....++....++|+.++++.
T Consensus 168 l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~L~t~v~~~ 246 (364)
T 3l6a_A 168 MQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQY 246 (364)
T ss_dssp SGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHH
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.08 E-value=3.2e+02 Score=22.18 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHHcCChHHHHHHHHHHHH
Q 006614 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKP--DVYTYNALMS-G-----MVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~m~~ 540 (638)
-+..|.. |++-+|-++|+..=+..-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 39 ~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333433 88888888888876554344 4555666666 2 2246788888888877765
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.77 E-value=1.9e+02 Score=23.02 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006614 292 MKGKGCALTVYTYTELIKGLGRAG-RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 351 (638)
+.+.|..++..= ..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555544322 23334444444 455566666666666555555555555555555443
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.66 E-value=3.7e+02 Score=22.71 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 006614 491 GRLSDAVDLFNEMKKLRCKPD 511 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~ 511 (638)
.+++.|+-.+-+|.+.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 444555555555554443333
No 330
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.39 E-value=5.7e+02 Score=24.87 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006614 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
..+.+.|+..+..|.+.|..|....-..++.+...-|
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 4566666666666666665554444444444444433
No 331
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=21.36 E-value=4.7e+02 Score=23.90 Aligned_cols=238 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCChh------hHHHHH
Q 006614 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV------TYNTVI 378 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~ll 378 (638)
..++.-|...|+.++|...++++......|..+....-...=.+...-+.+..++..+...-+.++.. ....+=
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~ld 86 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLP 86 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHH
Q 006614 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME---------------EKGFPPCPA 443 (638)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~ 443 (638)
.......+..+..-.++......++-|-.+.....-..-...|. +++..-+.+. ..+..+...
T Consensus 87 Dl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~--~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 87 ELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR--AALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHH--HHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred HhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHH--HHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Q ss_pred ---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccCCH--HHHHHHHHHHHhCCCCCCHHHHHHH
Q 006614 444 ---AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRL--SDAVDLFNEMKKLRCKPDVYTYNAL 518 (638)
Q Consensus 444 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~l 518 (638)
....++.-|...|+.++|.+.++++... ......+...+..++-+.++. +....++..+.+.|+-+.......+
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf 243 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGY 243 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHHHcCC--------hHHHHHHHHHHHHCCCCC
Q 006614 519 MSGMVRAGM--------IDDAYSLLRRMEEDGCVP 545 (638)
Q Consensus 519 ~~~~~~~g~--------~~~A~~~~~~m~~~~~~p 545 (638)
...+....+ ++-.-+++..+...|+-|
T Consensus 244 ~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 244 ERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCC
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.33 E-value=1.3e+02 Score=23.22 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=18.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 006614 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
++.+...+.+-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333333344444444444444443444444444444444444
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.25 E-value=3.8e+02 Score=24.44 Aligned_cols=19 Identities=5% Similarity=0.088 Sum_probs=10.4
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 006614 131 LIRCLDETRMIGVMWKSIQ 149 (638)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~ 149 (638)
.+..-++.|+.+-+..+++
T Consensus 28 ~L~~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 28 LLIKAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3444456777765554443
Done!